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Active monitoring of EBLV infection in natural colonies of the mouse-eared Bat (Myotis myotis). 鼠耳蝠(Myotis Myotis)自然菌落中EBLV感染的主动监测。
Pub Date : 2008-01-01
B Amengual, H Bourhy, M López-Roig, J Serra-Cobo

Bats are important reservoir hosts of RNA viruses, including lyssaviruses, which can cross the species barrier to infect humans and other domestic and wild non-flying mammals. Six of the seven Lyssavirus genotypes described to date infect bats. In Europe, two genotypes of Lyssavirus, European bat Lyssavirus types 1 and 2 (EBLV-1 and EBLV-2), circulate among several bat species and numerous bats are found infected every year. To provide epidemiologists and public health officials with data to effectively implement public health measures, we have undertaken field studies to identify the temporal dynamics of virus infection in bat colonies by combining multidisciplinary approaches. We have focused our work on a long-term longitudinal survey of different bat colonies in the Balearic Islands. The prevalence of virus RNA and neutralizing antibodies were analysed in captured bats. The bats were banded to allow for individual monitoring of infection and movements between colonies. The results show different lyssavirus infection episodes across the twelve years of study and provide the first evidence that mortality of the mouse-eared bat (Myotis myotis) in their natural environment does not increase significantly after episodes of EBLV-1 infection.

蝙蝠是RNA病毒(包括溶血病毒)的重要宿主,这种病毒可以跨越物种屏障感染人类和其他家养和野生非飞行哺乳动物。迄今所描述的7种溶血病毒基因型中有6种感染蝙蝠。在欧洲,两种基因型的溶血病毒,即欧洲蝙蝠溶血病毒1型和2型(EBLV-1和EBLV-2),在几种蝙蝠中传播,每年发现许多蝙蝠受到感染。为了向流行病学家和公共卫生官员提供有效实施公共卫生措施的数据,我们进行了实地研究,通过结合多学科方法确定蝙蝠群体中病毒感染的时间动态。我们的工作重点是对巴利阿里群岛不同蝙蝠群落的长期纵向调查。在捕获的蝙蝠中分析了病毒RNA和中和抗体的流行情况。这些蝙蝠被绑在一起,以便对感染情况和种群之间的移动进行单独监测。结果显示,在12年的研究中,不同的溶血病毒感染发作,并提供了第一个证据,证明小鼠耳蝠(Myotis Myotis)在自然环境中的死亡率在EBLV-1感染发作后没有显著增加。
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引用次数: 0
Diagnostic markers for diseases: SELDI-TOF profiling of pig sera for PRRS. 疾病诊断标记:猪血清PRRS的SELDI-TOF分析。
Pub Date : 2008-01-01 DOI: 10.1159/000317191
S Genini, M Cantu, S Botti, R Malinverni, A Costa, D Marras, E Giuffra
Porcine reproductive and respiratory syndrome (PRRS) is a highly infectious viral disease causing severe losses to the pig industry. Most weaning piglets are likely to be exposed to the infection and show at least asymptomatic PRRS viremia strongly related to productive performance. The aims of this study were to set up experimental conditions for pig sera proteomic profiling and to identify biomarkers that differentiate weaning asymptomatic piglets positive to PRRS viremia from negative controls (PCR tested) with potential predictive value for the subsequent occurrence of clinical PRRS. Protein profiles were generated by SELDI-TOF MS using the Bio-Rad Chips WCX, IMAC30 and H50. The discovery phase revealed that a consistent number of highly significant protein peaks can be detected by the WCX and IMAC30 surfaces; however none of these peaks were statistically confirmed by the subsequent validation phase, highlighting that serum concentration of the contaminant and most abundant proteins is a crucial parameterfor SELDI-TOF MS studies. Current protocols are being furtheroptimized and adapted to pig sera to reduce the unfavourable effects of the most abundant proteins and to increase the number of potential detectable biomarkers. Furthermore, proteomic fingerprint profiling has been shown to be a promising diagnostic tool that, in the future, may be useful to provide also insights into the mechanisms of early viral infection in vivo.
猪繁殖与呼吸综合征(PRRS)是一种高度传染性的病毒性疾病,对养猪业造成严重损失。大多数断奶仔猪可能暴露于感染,并表现出与生产性能密切相关的至少无症状的PRRS病毒血症。本研究的目的是建立猪血清蛋白质组学分析的实验条件,并确定区分无症状断奶仔猪PRRS病毒血症阳性与阴性对照(PCR检测)的生物标志物,对随后临床PRRS的发生具有潜在的预测价值。采用Bio-Rad芯片WCX、IMAC30和H50进行SELDI-TOF质谱分析。发现阶段表明,WCX和IMAC30表面可以检测到一致数量的高度显著的蛋白峰;然而,这些峰值都没有在随后的验证阶段得到统计证实,这表明污染物和最丰富蛋白质的血清浓度是SELDI-TOF质谱研究的关键参数。目前的方案正在进一步优化和适应猪血清,以减少最丰富的蛋白质的不利影响,并增加潜在可检测的生物标志物的数量。此外,蛋白质组学指纹图谱已被证明是一种很有前途的诊断工具,在未来,它可能有助于深入了解体内早期病毒感染的机制。
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引用次数: 2
Dynamic differential regulation of innate immune transcripts during the infection of alveolar macrophages by the porcine reproductive and respiratory syndrome virus. 猪繁殖与呼吸综合征病毒感染肺泡巨噬细胞时先天免疫转录物的动态差异调控
Pub Date : 2008-01-01 DOI: 10.1159/000317166
T Ait-Ali, A D Wilson, D G Westcott, J P Frossard, M A Mellencamp, T W Drew, S C Bishop, A L Archibald
Porcine reproductive and respiratory syndrome virus (PRRSV), an arterivirus, is the etiologic agent of an infectious disease of that name, characterized by respiratory disorders, abortion in pregnant sows and high mortality in piglets, resulting in significant economic losses in the pig industry worldwide. In order to identify whether genetic differences in PRRSV response may exist in pigs, alveolar macrophages were used to assess the progression of the type-I interferon (IFN) transcript response in porcine alveolar macrophages infected by PRRSV. Our results suggest that a dynamic differential regulation of the type-I IFN and chemokine transcripts may operate during the first hours of infection with and entry of the virus in alveolar macrophages, and provide a compelling mechanism for the establishment of PRRSV replication in susceptible cells.
猪繁殖与呼吸综合征病毒(PRRSV)是一种动脉病毒,是猪繁殖与呼吸综合征传染病的病原,其特征是呼吸系统疾病、怀孕母猪流产和仔猪高死亡率,给全世界的养猪业造成重大经济损失。为了确定猪的PRRSV应答是否存在遗传差异,我们利用肺泡巨噬细胞来评估感染PRRSV的猪肺泡巨噬细胞中i型干扰素(IFN)转录物应答的进展情况。我们的研究结果表明,在病毒感染和进入肺泡巨噬细胞的最初几个小时内,i型IFN和趋化因子转录物的动态差异调控可能起作用,并为PRRSV在易感细胞中建立复制提供了令人信服的机制。
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引用次数: 8
Associations between polymorphisms in the porcine haptoglobin gene and baseline levels of serum haptoglobin. 猪触珠蛋白基因多态性与血清触珠蛋白基线水平之间的关系。
Pub Date : 2008-01-01 DOI: 10.1159/000317168
A B Diack, C D Gladney, M A Mellencamp, M J Stear, P D Eckersall

Haptoglobin (Hp) is an acute phase protein that is a marker in blood for clinical and subclinical disease in the pig. The aim of this study was to identify single nucleotide polymorphisms (SNPs) in the Hp gene and analyse their influence on baseline serum levels. DNA samples and serum were collected from 345 boars. Of 13 SNPs identified, 5 were genotyped using PCR-RFLP and Pyrosequencing. Serum Hp levels were measured using a biochemical assay. A general linear model was fitted with line and genotype as fixed effects. In addition, linkage disequilibrium (LD) was estimated between the 5 SNPs using r-square and D prime. Serum Hp concentrations in the population showed a skewed distribution with a mean of 0.34 g/L (range 0-2.65 g/L). Three SNPs were found to be associated with baseline Hp levels (p-value = 0.0093, 0.0051 and 0.0094). These 3 SNPs were also found to be in high LD with each other. This is the first study to find associations between polymorphisms in the porcine Hp gene and baseline Hp serum levels. The results have implications for breeding for resistance to infection.

触珠蛋白(Hp)是一种急性期蛋白,是猪临床和亚临床疾病的血液标志物。本研究的目的是鉴定Hp基因的单核苷酸多态性(snp)并分析其对基线血清水平的影响。采集了345头公猪的DNA和血清样本。鉴定的13个snp中,有5个通过PCR-RFLP和焦磷酸测序进行了基因分型。采用生化法测定血清Hp水平。以系型和基因型为固定效应,拟合一般线性模型。此外,利用r-平方和D '估计了5个snp之间的连锁不平衡(LD)。人群血清Hp浓度呈偏态分布,平均为0.34 g/L(范围0 ~ 2.65 g/L)。发现3个snp与基线Hp水平相关(p值分别为0.0093、0.0051和0.0094)。这3个snp也被发现彼此具有高LD。这是首次发现猪Hp基因多态性与Hp基线血清水平之间存在关联的研究。研究结果对抗感染育种具有启示意义。
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引用次数: 3
Detection and confirmation of a major QTL affecting resistance to infectious pancreatic necrosis (IPN) in Atlantic salmon (Salmo salar). 影响大西洋鲑鱼(Salmo salar)传染性胰腺坏死(IPN)抗性的一个主要QTL的检测和确认。
Pub Date : 2008-01-01 DOI: 10.1159/000317160
R D Houston, A Gheyas, A Hamilton, D R Guy, A E Tinch, J B Taggart, B J McAndrew, C S Haley, S C Bishop
Infectious pancreatic necrosis (IPN) is a viral disease currently presenting a major problem to the aquaculture of Atlantic salmon (Salmon salar), during both the freshwater and seawater stages of production. Genetic variation in resistance to IPN has previously been demonstrated and the purpose of this study was to determine whether this variation includes loci of major effect. The initial QTL detection methodology utilized the limited recombination seen in male salmon to detect QTL in ten large full-sib families, using a genome-wide scan of two to three markers per linkage group. QTL were then positioned by adding additional markers to the significant linkage groups in a female-based analysis. The most significant QTL was mapped to LG 21, and further confirmation of the LG 21 QTL is provided in an analysis of the QTL flanking markers in an additional nine full-sib families from the same population. The size of QTL effect is such that the QTL flanking markers can be immediately applied in marker-assisted selection programmes to improve the resistance of salmon populations to IPN, thus reducing mortality due to the disease.
感染性胰腺坏死(IPN)是一种病毒性疾病,目前在淡水和海水生产阶段对大西洋鲑鱼(salmon salar)的水产养殖都是一个主要问题。对IPN抗性的遗传变异先前已被证实,本研究的目的是确定这种变异是否包括主要影响的位点。最初的QTL检测方法利用在雄性鲑鱼中发现的有限重组来检测10个大型全同胞家族的QTL,每个连锁组使用2到3个标记的全基因组扫描。然后在基于女性的分析中,通过向显著连锁组添加额外标记来定位QTL。最显著的QTL定位于LG 21,并通过对来自同一群体的另外9个全同胞家族的QTL侧翼标记的分析进一步证实了LG 21 QTL。QTL效应如此之大,以至于QTL侧翼标记可以立即应用于标记辅助选择计划,以提高鲑鱼种群对IPN的抵抗力,从而降低该疾病造成的死亡率。
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引用次数: 49
Stray dogs in Bangkok, Thailand: rabies virus infection and rabies antibody prevalence. 泰国曼谷流浪狗:狂犬病毒感染和狂犬抗体流行。
Pub Date : 2008-01-01
S Kasempimolporn, B Sichanasai, W Saengseesom, S Puempumpanich, V Sitprija

In Thailand, the animal most reported rabid is the stray dog. Dog bite related rabies cases in humans account for 70-95% of rabies related deaths. The reported incidence of dog bites is highest in the central part of the country, especially in Bangkok. This epidemiological survey shows that at least five different canine rabies virus types are present in Bangkok. Rabies antigen and antibody prevalence in stray dogs in Bangkok was also investigated. Saliva and serum samples were taken from 3,314 stray dogs, captured between December 2003 and June 2004. One two year-old female was antigen positive by latex agglutination test and the result was confirmed by reverse transcription-polymerase chain reaction (RT-PCR). The overall antibody seroprevalence by enzyme-linked immunosorbent assay was 62% (95% CI: 54, 70%). Antibody seroprevalence was higherfor dogs captured within central Bangkok (86% of 1,208 dogs captured) than in the dogs captured on the outskirts of the greater metropolitan area (49% of 2,106 dogs captured). If our sample of stray dogs is representative, then the seroprevalence achieved from previous vaccination campaigns is insufficient in order to break the rabies transmission cycle among stray and feral dogs.

在泰国,据报道患狂犬病最多的动物是流浪狗。与狗咬伤有关的人类狂犬病病例占狂犬病相关死亡的70-95%。据报道,狗咬伤的发生率在该国中部地区最高,特别是在曼谷。这项流行病学调查显示,曼谷至少存在五种不同的犬狂犬病毒类型。调查了曼谷流浪狗狂犬病抗原和抗体的流行情况。本署在2003年12月至2004年6月期间,抽取了3314只流浪狗的唾液及血清样本。1例2岁雌兔乳胶凝集试验抗原阳性,逆转录聚合酶链反应(RT-PCR)证实阳性。酶联免疫吸附试验的总抗体血清阳性率为62% (95% CI: 54,70%)。在曼谷市中心捕获的犬(1,208只捕获的犬中有86%)的抗体血清阳性率高于在大都市区郊区捕获的犬(2,106只捕获的犬中有49%)。如果我们的流浪狗样本具有代表性,那么从以前的疫苗接种运动中获得的血清流行率不足以打破流浪狗和野狗之间的狂犬病传播周期。
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引用次数: 0
The application of genetic markers for EBLV surveillance in European bat species. 遗传标记在欧洲蝙蝠EBLV监测中的应用。
Pub Date : 2008-01-01
S L Harris, N Johnson, S M Brookes, A M Hutson, A R Fooks, G Jones

The United Kingdom has performed passive surveillance for European bat lyssaviruses (EBLVs) since 1987, and species-targeted surveillance since 2003. One critical component of these studies is the accurate identification of bats either submitted for testing or sampled in the field. Identification is dependent on numerous morphological characteristics. Whilst this is an effective means of bat identification, a number of problems remain with this approach. It relies on the experience of bat specialists and can lead to problems in differentiating members of the Myotis genus, particularly between Myotis mystacinus (whiskered bat) and Myotis brandtii (Brandt's bat), and between the most common species of the genus Pipistrellus. Furthermore, degradation of bats submitted for testing can also lead to problems in making an accurate species identification. Comparison of genetic sequence data could offer an alternative approach to differentiating bat species when morphological characterisation is not possible. Using tissue samples from UK resident bat species, sequence analysis of the mitochondrial DNA cytochrome b gene, and the beta-actin gene allowed for identification of many of the most common bat species in the UK, and genetic separation of two morphologically cryptic species. Application of this approach identified the species of a bat infected with EBLV-2 in Surrey as Myotis daubentoni (Daubenton's bat).

自1987年以来,英国一直对欧洲蝙蝠溶血病毒(eblv)进行被动监测,并自2003年以来进行了针对物种的监测。这些研究的一个关键组成部分是准确识别提交测试或在实地取样的蝙蝠。鉴定依赖于许多形态特征。虽然这是一种有效的蝙蝠识别手段,但这种方法仍然存在一些问题。它依赖于蝙蝠专家的经验,并可能导致在区分Myotis mystacinus(须蝠)和Myotis brandtii(勃兰特蝙蝠)之间以及Pipistrellus属中最常见的物种之间的问题。此外,提交测试的蝙蝠的退化也可能导致准确的物种识别问题。比较基因序列数据可以提供另一种方法来区分蝙蝠物种时,形态特征是不可能的。利用来自英国蝙蝠物种的组织样本,对线粒体DNA细胞色素b基因和β -肌动蛋白基因进行序列分析,可以识别英国许多最常见的蝙蝠物种,并对两个形态隐秘的物种进行遗传分离。应用该方法在萨里鉴定了感染EBLV-2的一种蝙蝠为道本顿蝙蝠(Myotis daubentoni)。
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引用次数: 0
Improving pig health through genomics: a view from the industry. 通过基因组学改善猪的健康:来自业界的观点。
Pub Date : 2008-01-01 DOI: 10.1159/000317142
M A Mellencamp, L Galina-Pantoja, C D Gladney, M Torremorell

Health is one of the most important contributors to animal welfare, productivity and profitability in pig production today. For the past 30 years, pig breeders have focused on genetic improvement of lean growth, feed efficiency, meat quality and reproduction. However, in recent years, selection objectives have been broadened to include livability, robustness and disease resistance. A DNA marker for selection of resistance to F18+ E. coli has been available for several years. This marker decreases mortality and improves growth on farms experiencing post-weaning scours and/or oedema disease. However, for most diseases affecting intensive production systems such as porcine reproductive and respiratory syndrome (PRRS), porcine circovirus type 2-associated diseases (PCVAD), Haemophilus parasuis, and swine influenza virus, resistance is a complex and polygenic trait. Selection for improved resistance to these diseases will be incremental and require use of multiple markers in complex breeding schemes. Novel technologies such as pig gene microarrays, single nucleotide polymorphism (SNP) panels and advanced bioinformatics are being used to identify new health candidate genes for these economically important diseases. Lagging behind, however, is availability of large DNAdatasets from pedigreed populations with accurately measured health phenotypes that are needed to identify associations between SNPs and health traits. Increased focus on datasets with health traits will be the key to finding useable discoveries with new genomics technologies. Currently, the industry uses dozens of SNP markers to increase the accuracy of selection for complex breeding objectives, including disease resistance. As the pig genome is sequenced and barriers to genotyping thousand of markers are eliminated, genomic selection for health traits will receive increasing attention from commercial breeders.

在今天的养猪生产中,健康是动物福利、生产力和盈利能力的最重要因素之一。在过去的30年里,养猪者一直专注于瘦肉生长、饲料效率、肉质和繁殖的遗传改良。然而,近年来,选择目标已经扩大到包括宜居性、健壮性和抗病性。一种用于选择对F18+大肠杆菌耐药的DNA标记物已经存在好几年了。该标记物可降低断奶后猪场的死亡率,并改善猪场的生长。然而,对于大多数影响集约化生产系统的疾病,如猪繁殖与呼吸综合征(PRRS)、猪圆环病毒2型相关疾病(PCVAD)、副猪嗜血杆菌和猪流感病毒,耐药性是一种复杂的多基因特征。提高对这些疾病的抗性的选择将是渐进的,并且需要在复杂的育种计划中使用多种标记。诸如猪基因微阵列、单核苷酸多态性(SNP)面板和先进的生物信息学等新技术正被用于识别这些经济上重要疾病的新的健康候选基因。然而,落后的是来自具有精确测量健康表型的谱系人群的大型dna数据集的可用性,这些数据集需要识别snp与健康特征之间的关联。增加对健康特征数据集的关注将是利用新的基因组学技术找到可用发现的关键。目前,该行业使用数十种SNP标记来提高复杂育种目标(包括抗病性)选择的准确性。随着猪基因组的测序和数千个标记的基因分型障碍的消除,健康性状的基因组选择将受到商业育种者越来越多的关注。
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引用次数: 19
Integrated immunogenomics in the chicken: deciphering the immune response to identify disease resistance genes. 鸡的综合免疫基因组学:破译免疫反应以鉴定抗病基因。
Pub Date : 2008-01-01 DOI: 10.1159/000317144
P Kaiser, J Howell, M Fife, J-R Sadeyen, N Salmon, L Rothwell, J Young, P van Diemen, M Stevens, T-Y Poh, M Jones, P Barrow, P Wigley, H He, C Swaggerty, M Kogut, J Smith, D Burt

Resistance to infection takes place at many levels, and involves both non-specific and specific immune mechanisms. The chicken has a different repertoire of immune genes, molecules, cells and organs compared to mammals. To understand the role of any disease resistance gene(s), it is therefore important to understand these different repertoires, and the bird's response to a particular pathogen. Our studies focus on the innate immune response, as responses of macrophages from inbred lines of chickens, and heterophils from commercial birds, correlate with resistance or susceptibility to Salmonella infection with a variety of Salmonella serovars and infection models. To map disease resistance genes, we are using a combination of expression quantitative trait loci (eQTLs) from microarray studies, allied with whole genome SNP arrays (WGA) and a candidate gene approach. There are over 500 human genes with the Gene Ontology term "innate immunity". We have identified over 400 of these genes in the chicken genome, and are actively identifying informative SNPs in them. The segregation of 6000 WGA SNPs across all of our inbred lines was also assessed, which should yield approximately 900 informative SNPs for a cross between any two lines. The initial focus of these studies is on mapping resistance genes in our inbred lines, but the studies will be extended to commercial flocks.

对感染的抵抗发生在许多层面,涉及非特异性和特异性免疫机制。与哺乳动物相比,鸡拥有不同的免疫基因、分子、细胞和器官。因此,为了了解任何抗病基因的作用,了解这些不同的基因库以及鸟类对特定病原体的反应是很重要的。我们的研究重点是先天性免疫反应,即鸡自交系巨噬细胞的反应,以及商业鸟类的嗜杂性细胞的反应,与各种沙门氏菌血清型和感染模型的沙门氏菌感染抗性或易感性相关。为了绘制抗病基因,我们结合了来自微阵列研究的表达数量性状位点(eQTLs)、全基因组SNP阵列(WGA)和候选基因方法。基因本体术语“先天免疫”包含了500多个人类基因。我们已经在鸡的基因组中发现了400多个这样的基因,并正在积极地识别其中的信息snp。我们还评估了所有自交系中6000个WGA snp的分离,任何两个系之间的杂交应该产生大约900个信息snp。这些研究的最初重点是在我们的自交系中定位抗性基因,但研究将扩展到商业禽群。
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引用次数: 31
Quantitative genetic and functional genomics approaches to investigating parasite disease resistance and protective immune mechanisms in avian coccidiosis. 定量遗传和功能基因组学方法研究禽球虫病的寄生虫病抗性和保护性免疫机制。
Pub Date : 2008-01-01 DOI: 10.1159/000317145
H S Lillehoj, Y Hong, C Kim

A major challenge for the commercial poultry production is controlling enteric disease-causing pathogens in the absence of prophylactic drugs. Although traditional genetic approaches have contributed to enhanced efficiency of poultry production and increased the ability of the industry to provide safe, high quality, and low cost meat products to consumers, economic losses due to enteric diseases remains a significant problem. Therefore, there is a need to develop alternative control strategies against poultry enteric pathogens of economic importance. Recent advances in molecular genetics and functional genomics are now allowing for rapid progress in understanding the molecular mechanisms of disease resistance against major infectious agents of poultry. It is anticipated that identifying the nature of host-pathogen interactions will facilitate the development of novel vaccines and therapeutics. In this paper, recent progress in identifying genes that influence resistance to avian coccidiosis, the most economically important disease of poultry, will be discussed. This work provides an excellent example of how the integration of new molecular genetic and functional genomics tools increases our knowledge of the mechanism of genetic resistance to complex diseases.

在缺乏预防药物的情况下,控制肠道致病菌是商业家禽生产面临的主要挑战。尽管传统的遗传方法有助于提高家禽生产的效率,并提高了该行业向消费者提供安全、高质量和低成本肉制品的能力,但肠道疾病造成的经济损失仍然是一个重大问题。因此,有必要开发具有经济重要性的家禽肠道病原体的替代控制策略。分子遗传学和功能基因组学的最新进展使人们在了解家禽对主要感染原的抗病分子机制方面取得了快速进展。预计确定宿主-病原体相互作用的性质将有助于开发新的疫苗和治疗方法。本文将讨论影响禽球虫病(家禽最重要的经济疾病)抗性的基因鉴定的最新进展。这项工作提供了一个很好的例子,说明如何整合新的分子遗传学和功能基因组学工具,增加我们对复杂疾病遗传抗性机制的认识。
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引用次数: 12
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