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StainStyleSampler: clustering-based sampling of whole slide image appearances. StainStyleSampler:对整个幻灯片图像外观进行基于聚类的采样。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-02-05 DOI: 10.1186/s13000-026-01752-4
Maya Maya Barbosa Silva, Sabine Leh, Hrafn Weishaupt

The appearance of whole slide biopsy images is greatly affected by various factors such as laboratory procedures or the choice of digital slide scanners. The resulting variations in image styles within and across batches of histological images represent one of the major obstacles to the development of generalizable machine learning algorithms. To overcome this challenge, a lot of research has focused on stain normalization and stain augmentation techniques. While such approaches provide effective strategies to reduce stain variation or increase stain invariance, respectively, they typically involve only limited modelling or sampling of the underlying stain style distribution. Tools for a streamlined sampling of different aspects of such a distribution, which would be crucial e.g. for explicitly evaluating machine learning robustness across or with respect to major stain styles, remain largely missing. Here, we present the StainStyleSampler, a toolkit for (i) the exploration and modelling of stain style variations, and (ii) the automated sampling of images or styles capturing the core components of this variation. The tool enables the extraction of various colour features and deconvolved stain components, visualization of such features directly or after dimensionality reduction, modelling of style distributions using binning, clustering, and density mapping, and automated sampling of the most representative reference images. We believe that this software will equip pathologists and computer-scientists with a more versatile set of tools that can substantially aid in both the exploration and sampling of stain variation across whole slide images.

整个切片活检图像的外观很大程度上受到各种因素的影响,如实验室程序或数字切片扫描仪的选择。由此产生的组织学图像内部和跨批次图像风格的变化代表了可泛化机器学习算法发展的主要障碍之一。为了克服这一挑战,许多研究都集中在染色归一化和染色增强技术上。虽然这些方法分别提供了减少染色变异或增加染色不变性的有效策略,但它们通常只涉及对潜在染色风格分布的有限建模或采样。对于这种分布的不同方面进行流线型采样的工具,这将是至关重要的,例如明确评估机器学习跨主要染色风格的鲁棒性,但在很大程度上仍然缺失。在这里,我们展示了StainStyleSampler,这是一个用于(i)探索和建模污渍风格变化的工具包,以及(ii)捕获这种变化的核心组件的图像或风格的自动采样。该工具可以提取各种颜色特征和反卷积染色成分,直接或在降维之后对这些特征进行可视化,使用分类、聚类和密度映射对风格分布进行建模,并对最具代表性的参考图像进行自动采样。我们相信,该软件将为病理学家和计算机科学家提供一套更通用的工具,可以在整个幻灯片图像的染色变化的探索和取样方面提供实质性的帮助。
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引用次数: 0
Quantification of interstitial fibrosis in digitized kidney biopsies using deep neural networks. 利用深度神经网络量化数字化肾活检的间质纤维化。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-02-04 DOI: 10.1186/s13000-026-01763-1
Neda Soleimani, Zahra Hajizadeh, Maryam Mohammadi, Sahand Mohammadzadeh
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引用次数: 0
Guidelines for the adoption of digital pathology in clinical pathology units recommended by the polish society of pathologists. 指导方针采用数字病理在临床病理单位推荐的波兰社会病理学家。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-30 DOI: 10.1186/s13000-026-01762-2
Łukasz Szylberg, Justyna Durślewicz, Łukasz Chmura, Witold Rezner, Artur Bartczak, Andrzej Marszałek

These guidelines provide a clear and practical framework for the effective implementation of digital pathology (DP) in routine anatomical pathology practice. Digital pathology, defined as the digitization of microscope slide into high-resolution whole slide images, is transforming the diagnostic workflow by enabling remote access, improved image analysis, integration with artificial intelligence (AI), and enhanced data management. While digital systems are becoming increasingly integrated into pathology laboratories, the physical archiving of microscope slides remains a legal and procedural requirement in many countries, particularly for histological and cytological materials. As DP continues to evolve globally, the establishment of clear standards, technical requirements, validation procedures, and interoperability guidelines is essential to maintain diagnostic accuracy, patient safety, and system reliability. These recommendations address key technical, organizational, and legal aspects of DP implementation, with an emphasis on ensuring consistent quality and minimizing variability in diagnostic outcomes. The outlined approach supports the safe and effective adoption of DP as an integral element of modern digital healthcare.

这些指南为在常规解剖病理学实践中有效实施数字病理学(DP)提供了一个清晰而实用的框架。数字病理学被定义为将显微镜载玻片数字化为高分辨率的整张载玻片图像,通过实现远程访问、改进的图像分析、与人工智能(AI)的集成以及增强的数据管理,正在改变诊断工作流程。虽然数字系统越来越多地集成到病理实验室中,但在许多国家,显微镜载玻片的物理存档仍然是一项法律和程序要求,特别是对于组织学和细胞学材料。随着DP在全球范围内的不断发展,建立明确的标准、技术要求、验证程序和互操作性指南对于保持诊断准确性、患者安全性和系统可靠性至关重要。这些建议涉及DP实施的关键技术、组织和法律方面,重点是确保一致的质量和尽量减少诊断结果的可变性。概述的方法支持安全有效地采用DP作为现代数字医疗保健的一个组成部分。
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引用次数: 0
Pathology of peripheral neuroblastic tumors. 周围神经母细胞瘤的病理。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-29 DOI: 10.1186/s13000-026-01758-y
Miriam R Conces, Yuichi Shibui, Hiroyuki Shimada

Neuroblastoma is the most prevalent extracranial solid tumor in pediatric age populations worldwide and the most common neoplastic disease diagnosed in the first year of life. The term neuroblastoma often encompasses all peripheral neuroblastic tumors (pNTs including neuroblastoma, ganglioneuroblastoma, and ganglioneuroma) of neural crest origin. Since pNTs demonstrate a wide range of clinical behaviors, including spontaneous regression, tumor differentiation/maturation, and aggressive progression refractory to even intensive treatment modalities, these tumors are believed to be distinguished into different biological/molecular groups. For the practical purpose, risk classification systems have been developed based on combinations of so-called prognostic factors.In this review of pNTs, we describe a history of pathology, summarize epidemiology and clinical features, and outline International Neuroblastoma Pathology Classification (INPC). Then we discuss advantages and limitations of core needle biopsy and conventional biopsy of neuroblastoma. Besides the INPC, we also describe other prognostic factors, such as age at diagnosis, clinical stage, and molecular/genetic factors, since they are included in widely used Risk Classification Systems. Additionally, we discuss further molecular abnormalities closely associated with highly aggressive neruoblastomas. Towards the end, we touch on rapidly advancing technologies for establishing an artificial intelligence-assisted INPC system.

神经母细胞瘤是全世界儿童年龄人群中最常见的颅外实体瘤,也是出生后第一年诊断出的最常见的肿瘤疾病。神经母细胞瘤这个术语通常包括所有神经嵴起源的周围神经母细胞瘤(pnt包括神经母细胞瘤、神经节神经母细胞瘤和神经节神经瘤)。由于pnt表现出广泛的临床行为,包括自发消退、肿瘤分化/成熟以及即使强化治疗也难以治愈的侵袭性进展,因此这些肿瘤被认为是不同的生物/分子群。为了实际目的,已经根据所谓的预后因素的组合开发了风险分类系统。在这篇综述中,我们描述了神经母细胞瘤的病理史,总结了流行病学和临床特征,并概述了国际神经母细胞瘤病理分类(INPC)。然后讨论了神经母细胞瘤穿刺活检与常规活检的优缺点。除了INPC,我们还描述了其他预后因素,如诊断年龄、临床分期和分子/遗传因素,因为它们被广泛使用的风险分类系统所包含。此外,我们进一步讨论与高度侵袭性神经母细胞瘤密切相关的分子异常。最后,我们谈到了建立人工智能辅助INPC系统的快速发展的技术。
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引用次数: 0
A novel immunohistochemical staining method of frozen sections improves the intraoperative diagnosis of Sclerosing Pneumocytoma and bronchiolar adenoma. 一种新的冷冻切片免疫组织化学染色方法提高了硬化性肺细胞瘤和细支气管腺瘤的术中诊断。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-27 DOI: 10.1186/s13000-026-01757-z
Qingqing Liu, Jiadi Luo, Qingchun Liang
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引用次数: 0
Pediatric malignant testicular germ cell tumors: a developmental and comparative perspective. 小儿睾丸恶性生殖细胞瘤:发展和比较的观点。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-27 DOI: 10.1186/s13000-026-01765-z
Sonja Chen, Andres Matoso

Malignant testicular germ cell tumors exhibit significant histologic diversity, particularly across pediatric age groups. Prepubertal patients more commonly develop yolk sac tumors, whereas postpubertal adolescents are more likely to present with mixed germ cell tumors arising from germ cell neoplasia in situ. Although clinical presentations may vary, histologic evaluation and immunohistochemistry remain the cornerstone of diagnosis. Additionally, molecular findings-especially the presence of isochromosome 12p-play a crucial role in prognosis. This review underscores the developmental origins and heterogeneity of malignant testicular germ cell tumors in pediatric populations and provides some contrast with their development in adults.

恶性睾丸生殖细胞肿瘤表现出显著的组织学多样性,特别是在儿童年龄组中。青春期前的患者更常发展为卵黄囊肿瘤,而青春期后的青少年更有可能出现由原位生殖细胞瘤引起的混合生殖细胞肿瘤。尽管临床表现可能不同,但组织学评估和免疫组织化学仍然是诊断的基石。此外,分子发现-特别是同工染色体12p的存在在预后中起着至关重要的作用。这篇综述强调了儿童人群中恶性睾丸生殖细胞肿瘤的发育起源和异质性,并提供了一些与成人发展的对比。
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引用次数: 0
Pulmonary metastasis of nasal cavity DEK::AFF2 squamous cell carcinoma: case report and diagnostic insights. 鼻腔DEK::AFF2鳞状细胞癌肺转移1例报告及诊断体会。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-26 DOI: 10.1186/s13000-026-01760-4
Yongqi Chen, Mengjie Lu, Zhenkui Sun, Kun Liu, Jiao Meng, Huaru Yan, Bin Chang
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引用次数: 0
TTF-1, CDX-2, PAX-8 and GATA-3 immunoexpression in a large serie of extrapulmonary small cell neuroendocrine carcinomas: a study of 138 cases. 138例肺外小细胞神经内分泌癌中TTF-1、CDX-2、PAX-8和GATA-3免疫表达的研究
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-26 DOI: 10.1186/s13000-026-01753-3
Klára Pavlíčková, Petr Waldauf, Pavel Dundr, Marián Švajdler, Pavel Fabian, Iva Staniczková Zambo, Miroslava Flídrová, Jan Laco, Helena Hornychová, Patricie Delongová, Jozef Škarda, Jan Hrudka, Radoslav Matěj
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引用次数: 0
Clinical and molecular characteristics of constitutional mismatch repair deficiency syndrome: a case series of five children and appraisal of diagnostic guidelines. 体质错配修复缺陷综合征的临床和分子特征:五个儿童的病例系列和诊断指南的评价。
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-22 DOI: 10.1186/s13000-026-01759-x
Jennifer Vazzano Goldstone, Suzanna J Logan, Benjamin J Wilkins, Suzanne P MacFarland, Miriam Conces, Daniel R Boué, Christopher R Pierson, Samir Kahwash, Kathleen M Schieffer, Catherine E Cottrell, Susan Colace, Kristin Zajo, Archana Shenoy

DNA mismatch repair (MMR) is critical for maintaining genome integrity through correction of single-base mismatches and insertion-deletion loops arising from DNA replication. Heterozygous germline alteration of MMR genes (MSH2, MSH6, MLH1, PMS2) cause autosomal dominant Lynch syndrome (LS), most commonly manifesting as colonic or endometrial cancers, although brain, ovarian, and other organ systems may be involved. Neoplasia in LS usually arises after the age of 30 years. Constitutional mismatch repair deficiency (CMMRD) is inherited in an autosomal recessive manner due to biallelic germline alteration in one of the four MMR genes. Individuals with CMMRD typically develop cancer in the first decade of life, although some may present during the second decade. We present a series of five children who developed cancer prior to the age of 20 years (range: 2-12 years) with malignancies including colonic adenocarcinoma (N = 1), T-lymphoblastic lymphoma (N = 3), and high-grade glioma (N = 4). Two patients with MSH6 alterations developed a constellation of three primary tumors: high-grade glioma, T-lymphoblastic lymphoma, and colonic neoplasia including colonic adenocarcinoma in one patient and a tubular adenoma in the other.

DNA错配修复(MMR)通过纠正DNA复制过程中产生的单碱基错配和插入-删除环,对维持基因组完整性至关重要。MMR基因(MSH2, MSH6, MLH1, PMS2)的杂合性种系改变导致常染色体显性Lynch综合征(LS),最常见的表现为结肠癌或子宫内膜癌,尽管脑,卵巢和其他器官系统可能涉及。LS的肿瘤通常发生在30岁以后。体质错配修复缺陷(CMMRD)以常染色体隐性遗传方式遗传,这是由于四个MMR基因之一的双等位种系改变。患有CMMRD的个体通常在生命的第一个十年患上癌症,尽管有些人可能在第二个十年出现。我们报告了5例在20岁之前罹患癌症的儿童(范围:2-12岁),其恶性肿瘤包括结肠腺癌(N = 1)、t淋巴母细胞淋巴瘤(N = 3)和高度胶质瘤(N = 4)。两名MSH6改变的患者发生了三种原发肿瘤:高级别胶质瘤、t淋巴母细胞淋巴瘤和结肠肿瘤,其中一名患者为结肠腺癌,另一名患者为管状腺瘤。
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引用次数: 0
Benign prostatic hyperplasia to HPIN to carcinoma; the impact of mast cells and VEGF. 从良性前列腺增生到HPIN癌;肥大细胞和VEGF的影响
IF 2.3 3区 医学 Q2 PATHOLOGY Pub Date : 2026-01-21 DOI: 10.1186/s13000-026-01749-z
Oya Nermin Sivrikoz, Aşkın Eroğlu, Bilgin Öztürk, İncila Öztop, Salahattin M Sanal
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引用次数: 0
期刊
Diagnostic Pathology
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