Pub Date : 2025-10-14DOI: 10.1186/s13000-025-01703-5
Xiangzhi Li, Guanxin Liu, Mengmeng Sun, Lu Wang, Bingdou He, Kefen Zhang, Shimei Zhao, Kaisheng Xie, Yuwei Jiang, Yajun Ying, Ning Liao, Xiaobo Yang
Background: The global incidence of thyroid cancer has significantly increased, while traditional pathological diagnosis remains time-consuming and expert-dependent. This study develops an auxiliary diagnostic tool designed to reduce the workload of pathologists and improve diagnostic accuracy.
Methods: Our study utilized 543 WSIs from Liuzhou Cancer Hospital for model development, employing a novel multi-feature fusion architecture that combines RetCCL, iBOT, and DINO embeddings. We systematically evaluated stain normalization and multi-scale analysis across four multiple-instance learning (MIL) frameworks: CLAM-SB (single-branch), CLAM-MB (multi-branch), DTFD (double-tier), and LA-MIL (location-aware). The method was rigorously validated on an independent set of 128 WSIs from Taizhou Cancer Hospital.
Results: The results show that stain normalization, multi-scale fusion, and multi-feature fusion significantly improve classification performance. In 10-fold cross-validation on the internal dataset, the system demonstrated significant improvements over the baseline RetCCL model: AUC (0.9900 vs. 0.9629), accuracy (0.9594 vs. 0.8951), with relative improvements of 2.8% in AUC and 7.2% in accuracy. Precision increased by 11.5% (0.9434 vs. 0.8461) and F1-score by 9.8% (0.9511 vs. 0.8665). On the external validation dataset, the model maintained robust performance with an AUC of 0.9584, accuracy of 0.9070, precision of 0.9247, and F1-score of 0.9348, confirming its reliability and applicability.
Conclusions: We propose a weakly supervised MIL framework integrating multi-scale analysis and cross-model feature fusion for thyroid cancer diagnosis. Our method showed promising and consistent results across internal and external datasets. While further clinical validation and workflow integration are needed, the results suggest the potential of this approach to assist pathologists in diagnostic workflows, particularly in resource-constrained settings.
背景:甲状腺癌的全球发病率显著增加,而传统的病理诊断仍然耗时和依赖专家。本研究开发了一种辅助诊断工具,旨在减少病理学家的工作量,提高诊断的准确性。方法:利用柳州肿瘤医院的543个wsi进行模型开发,采用一种结合RetCCL、iBOT和DINO嵌入的新型多特征融合架构。我们系统地评估了四个多实例学习(MIL)框架的染色归一化和多尺度分析:CLAM-SB(单分支),CLAM-MB(多分支),DTFD(双层)和LA-MIL(位置感知)。该方法在台州市肿瘤医院128例独立wsi组中进行了严格验证。结果:结果表明,染色归一化、多尺度融合和多特征融合显著提高了分类性能。在内部数据集的10倍交叉验证中,该系统比基线RetCCL模型显示出显著的改进:AUC (0.9900 vs. 0.9629),准确度(0.9594 vs. 0.8951), AUC和准确度分别相对提高2.8%和7.2%。精密度提高11.5%(0.9434比0.8461),f1评分提高9.8%(0.9511比0.8665)。在外部验证数据集上,模型的AUC为0.9584,准确度为0.9070,精密度为0.9247,f1得分为0.9348,保持了稳健性,验证了模型的可靠性和适用性。结论:我们提出了一个弱监督MIL框架,结合多尺度分析和跨模型特征融合用于甲状腺癌诊断。我们的方法在内部和外部数据集上显示出有希望和一致的结果。虽然需要进一步的临床验证和工作流程整合,但结果表明,这种方法在帮助病理学家诊断工作流程方面具有潜力,特别是在资源受限的情况下。
{"title":"Thyroid pathology image classification via multi-scale feature fusion and multi-instance learning.","authors":"Xiangzhi Li, Guanxin Liu, Mengmeng Sun, Lu Wang, Bingdou He, Kefen Zhang, Shimei Zhao, Kaisheng Xie, Yuwei Jiang, Yajun Ying, Ning Liao, Xiaobo Yang","doi":"10.1186/s13000-025-01703-5","DOIUrl":"10.1186/s13000-025-01703-5","url":null,"abstract":"<p><strong>Background: </strong>The global incidence of thyroid cancer has significantly increased, while traditional pathological diagnosis remains time-consuming and expert-dependent. This study develops an auxiliary diagnostic tool designed to reduce the workload of pathologists and improve diagnostic accuracy.</p><p><strong>Methods: </strong>Our study utilized 543 WSIs from Liuzhou Cancer Hospital for model development, employing a novel multi-feature fusion architecture that combines RetCCL, iBOT, and DINO embeddings. We systematically evaluated stain normalization and multi-scale analysis across four multiple-instance learning (MIL) frameworks: CLAM-SB (single-branch), CLAM-MB (multi-branch), DTFD (double-tier), and LA-MIL (location-aware). The method was rigorously validated on an independent set of 128 WSIs from Taizhou Cancer Hospital.</p><p><strong>Results: </strong>The results show that stain normalization, multi-scale fusion, and multi-feature fusion significantly improve classification performance. In 10-fold cross-validation on the internal dataset, the system demonstrated significant improvements over the baseline RetCCL model: AUC (0.9900 vs. 0.9629), accuracy (0.9594 vs. 0.8951), with relative improvements of 2.8% in AUC and 7.2% in accuracy. Precision increased by 11.5% (0.9434 vs. 0.8461) and F1-score by 9.8% (0.9511 vs. 0.8665). On the external validation dataset, the model maintained robust performance with an AUC of 0.9584, accuracy of 0.9070, precision of 0.9247, and F1-score of 0.9348, confirming its reliability and applicability.</p><p><strong>Conclusions: </strong>We propose a weakly supervised MIL framework integrating multi-scale analysis and cross-model feature fusion for thyroid cancer diagnosis. Our method showed promising and consistent results across internal and external datasets. While further clinical validation and workflow integration are needed, the results suggest the potential of this approach to assist pathologists in diagnostic workflows, particularly in resource-constrained settings.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"112"},"PeriodicalIF":2.3,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12522360/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145291663","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-14DOI: 10.1186/s13000-025-01713-3
Gertruda Evaristo, Namrata Setia, Peng Wang, Peter Pytel, Lindsay Alpert
Background: NTRK-rearranged spindle cell neoplasms constitute a novel, heterogeneous group of mesenchymal neoplasms originally described predominantly in soft tissue locations. They are commonly characterized by co-expression of S100 and CD34 immunostains and presence of NTRK fusions. While exceedingly rare, there are increasing reports of this lesion involving the gastrointestinal tract, presenting predominantly as large masses of the stomach, small bowel and colorectum.
Case presentation: We present a case of a 37-year-old male who on colonoscopy was found to have a one cm polyp of the sigmoid colon which was removed by hot snare polypectomy. Histologic examination revealed haphazardly arranged bland spindle cells with diffuse CD34 and S100 co-expression. A targeted Next-Generation RNA Fusion Assay identified a TPR::NTRK1 fusion, confirming the diagnosis of low-grade NTRK-rearranged spindle cell neoplasm. The mucosal and deep margins were free of tumor. In contrast to the previously reported cases, the patient was managed with polypectomy and active surveillance, and remained disease-free at 14 months follow up.
Conclusion: This case contributes to the limited body of literature on gastrointestinal low-grade NTRK-rearranged spindle cell neoplasms and raises the possibility of endoscopic treatment consideration for carefully selected patients.
{"title":"Low-grade NTRK-rearranged spindle cell neoplasm presenting as a colonic polyp and managed by polypectomy: a rare case report and literature review.","authors":"Gertruda Evaristo, Namrata Setia, Peng Wang, Peter Pytel, Lindsay Alpert","doi":"10.1186/s13000-025-01713-3","DOIUrl":"10.1186/s13000-025-01713-3","url":null,"abstract":"<p><strong>Background: </strong>NTRK-rearranged spindle cell neoplasms constitute a novel, heterogeneous group of mesenchymal neoplasms originally described predominantly in soft tissue locations. They are commonly characterized by co-expression of S100 and CD34 immunostains and presence of NTRK fusions. While exceedingly rare, there are increasing reports of this lesion involving the gastrointestinal tract, presenting predominantly as large masses of the stomach, small bowel and colorectum.</p><p><strong>Case presentation: </strong>We present a case of a 37-year-old male who on colonoscopy was found to have a one cm polyp of the sigmoid colon which was removed by hot snare polypectomy. Histologic examination revealed haphazardly arranged bland spindle cells with diffuse CD34 and S100 co-expression. A targeted Next-Generation RNA Fusion Assay identified a TPR::NTRK1 fusion, confirming the diagnosis of low-grade NTRK-rearranged spindle cell neoplasm. The mucosal and deep margins were free of tumor. In contrast to the previously reported cases, the patient was managed with polypectomy and active surveillance, and remained disease-free at 14 months follow up.</p><p><strong>Conclusion: </strong>This case contributes to the limited body of literature on gastrointestinal low-grade NTRK-rearranged spindle cell neoplasms and raises the possibility of endoscopic treatment consideration for carefully selected patients.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"111"},"PeriodicalIF":2.3,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12522387/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145291660","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Primary pulmonary malignant melanoma (PMML), an exceedingly rare aggressive neoplasm originating from bronchial mucosal melanocytes, is characterized by early metastatic dissemination and high mortality. While over 95% of malignant melanomas are cutaneous in origin, fewer than 80 PMML cases have been documented globally. The molecular pathogenesis of PMML remains poorly defined, with less prior genomic studies utilizing Next-generation sequencing (NGS) reported to date.
Case presentation: A 68-year-old asymptomatic woman was referred to our institution in June 2022 after a routine health screening revealed a solitary pulmonary nodule. Chest CT demonstrated a 1.2 cm × 0.8 cm hypodense nodular opacity nodule in the posterior segment of the left upper lobe. The lesion remained stable during a 2-month observation period. Despite the absence of respiratory symptoms (e.g., cough, hemoptysis) or constitutional signs (e.g., weight loss), the patient elected surgical resection due to persistent malignancy concerns.
Conclusion: Histopathological examination revealed tumor cells exhibiting epithelioid to spindle-shaped morphology, characterized by prominent nucleoli and intracytoplasmic melanin deposition (hematoxylin and eosin staining). Immunohistochemical analysis demonstrated diffuse and strong positivity for S-100, HMB-45, and Melan-A. Based on the histomorphological features and immunohistochemical profile, a diagnosis of malignant melanoma was established. NGS detected a somatic KIT exon 11 mutation (c.1727 T > C, p. Leu576Pro; variant allele frequency: 20.1%) and identified an SRD5A3-KIT gene fusion involving transcript variants NM_024592.4 (SRD5A3) and NM_000222.2 (KIT), with breakpoints in Exon 5 of SRD5A3 and Exon 6 of KIT. The fusion variant showed a somatic mutation frequency of 24.8%. These findings not only expand the molecular landscape of PMML but also suggest therapeutic opportunities through targeted kinase inhibition. This case underscores the critical role of integrated multimodal analysis (radiological-pathological-molecular) in characterizing rare malignancies.
背景:原发性肺恶性黑色素瘤(PMML)是一种起源于支气管粘膜黑色素细胞的极其罕见的侵袭性肿瘤,其特点是早期转移传播和高死亡率。虽然95%以上的恶性黑色素瘤起源于皮肤,但全球记录的PMML病例不到80例。PMML的分子发病机制仍然不明确,迄今为止使用下一代测序(NGS)的基因组研究报告较少。病例介绍:一名68岁无症状女性于2022年6月在常规健康筛查后被转介到我们机构,发现一个孤立的肺结节。胸部CT示左上肺叶后段一1.2 cm × 0.8 cm低密度结节性不透明结节。在2个月的观察期间,病变保持稳定。尽管没有呼吸道症状(如咳嗽、咯血)或体质体征(如体重减轻),但由于持续的恶性肿瘤担忧,患者选择手术切除。结论:组织病理学检查显示肿瘤细胞呈上皮样至梭形形态,核仁突出,胞浆内黑色素沉积(苏木精和伊红染色)。免疫组化分析显示S-100、HMB-45和Melan-A呈弥漫性和强阳性。根据组织形态学特征和免疫组化特征,诊断为恶性黑色素瘤。NGS检测到体细胞KIT外显子11突变(c.1727)T > C, p. Leu576Pro;变异等位基因频率:20.1%),鉴定出SRD5A3-KIT基因融合,涉及转录物变体NM_024592.4 (SRD5A3)和NM_000222.2 (KIT),断点位于SRD5A3的外显子5和KIT的外显子6。融合变异的体细胞突变频率为24.8%。这些发现不仅扩大了PMML的分子格局,而且表明了通过靶向激酶抑制治疗PMML的机会。该病例强调了综合多模式分析(放射-病理-分子)在罕见恶性肿瘤特征中的关键作用。
{"title":"Primary malignant melanoma of the lung with C-KIT mutation and SRD5A3-KIT fusion.","authors":"Lan Shen, Pei Guo, Mingzhen Li, Ting Jiang, Anjia Han, Xiaojuan Pei","doi":"10.1186/s13000-025-01711-5","DOIUrl":"10.1186/s13000-025-01711-5","url":null,"abstract":"<p><strong>Background: </strong>Primary pulmonary malignant melanoma (PMML), an exceedingly rare aggressive neoplasm originating from bronchial mucosal melanocytes, is characterized by early metastatic dissemination and high mortality. While over 95% of malignant melanomas are cutaneous in origin, fewer than 80 PMML cases have been documented globally. The molecular pathogenesis of PMML remains poorly defined, with less prior genomic studies utilizing Next-generation sequencing (NGS) reported to date.</p><p><strong>Case presentation: </strong>A 68-year-old asymptomatic woman was referred to our institution in June 2022 after a routine health screening revealed a solitary pulmonary nodule. Chest CT demonstrated a 1.2 cm × 0.8 cm hypodense nodular opacity nodule in the posterior segment of the left upper lobe. The lesion remained stable during a 2-month observation period. Despite the absence of respiratory symptoms (e.g., cough, hemoptysis) or constitutional signs (e.g., weight loss), the patient elected surgical resection due to persistent malignancy concerns.</p><p><strong>Conclusion: </strong>Histopathological examination revealed tumor cells exhibiting epithelioid to spindle-shaped morphology, characterized by prominent nucleoli and intracytoplasmic melanin deposition (hematoxylin and eosin staining). Immunohistochemical analysis demonstrated diffuse and strong positivity for S-100, HMB-45, and Melan-A. Based on the histomorphological features and immunohistochemical profile, a diagnosis of malignant melanoma was established. NGS detected a somatic KIT exon 11 mutation (c.1727 T > C, p. Leu576Pro; variant allele frequency: 20.1%) and identified an SRD5A3-KIT gene fusion involving transcript variants NM_024592.4 (SRD5A3) and NM_000222.2 (KIT), with breakpoints in Exon 5 of SRD5A3 and Exon 6 of KIT. The fusion variant showed a somatic mutation frequency of 24.8%. These findings not only expand the molecular landscape of PMML but also suggest therapeutic opportunities through targeted kinase inhibition. This case underscores the critical role of integrated multimodal analysis (radiological-pathological-molecular) in characterizing rare malignancies.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"113"},"PeriodicalIF":2.3,"publicationDate":"2025-10-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12522767/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145291637","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-10-02DOI: 10.1186/s13000-025-01712-4
R Gervasi, G L Piazzetta, G Soluri, C Scigliano, C Pelaia, N Lobello, E Allegra, E Chiarella, N Innaro
Introduction: Primary hyperparathyroidism (PHPT) is a prevalent endocrine disorder characterized by elevated parathyroid hormone (PTH) levels and hypercalcemia, most commonly caused by solitary adenomas. Double adenomas, particularly those arising in ectopic and supernumerary glands, represent a rare diagnostic and surgical challenge.
Case presentation: We report the case of a 64-year-old woman presenting with symptomatic PHPT. Preoperative imaging demonstrated uptake consistent with two hyperfunctioning parathyroid adenomas, including a rare supernumerary ectopic adenoma in lesion the right parotid region. Definitive diagnosis and surgical planning were guided by 18 F-fluorocholine PET/CT, which proved superior to conventional modalities.
Discussion: This case underscores the critical role of advanced imaging techniques in the localization of parathyroid adenomas, particularly in anatomically atypical sites. The combination of functional and anatomical imaging with 18 F-fluorocholine PET/CT enabled accurate detection of both lesions and informed a multidisciplinary surgical approach.
Conclusion: Integration of 18 F-fluorocholine PET/CT into the diagnostic workflow enhances the precision of parathyroid adenoma localization, especially in rare ectopic presentations. This contributes to tailored surgical strategies and improved patient outcomes. Histopathological examination confirmed two distinct adenomas, including one embedded in the parotid gland, supporting the diagnosis of a supernumerary ectopic parathyroid adenoma.
原发性甲状旁腺功能亢进(PHPT)是一种常见的内分泌疾病,以甲状旁腺激素(PTH)水平升高和高钙血症为特征,最常由孤立腺瘤引起。双腺瘤,特别是那些发生在异位腺和多余腺,是一种罕见的诊断和手术挑战。病例介绍:我们报告的情况下,64岁的妇女提出症状PHPT。术前影像学显示摄取与两个功能亢进的甲状旁腺瘤一致,包括一个罕见的右侧腮腺区病变的外生异位腺瘤。最终诊断和手术计划由18f -氟胆碱PET/CT指导,证明其优于传统方式。讨论:本病例强调了先进成像技术在甲状旁腺瘤定位中的关键作用,特别是在解剖上不典型的部位。18 f -氟胆碱PET/CT结合功能和解剖成像,能够准确检测这两种病变,并为多学科手术方法提供信息。结论:将18f -氟胆碱PET/CT整合到诊断流程中,可提高甲状旁腺瘤定位的准确性,特别是在罕见的异位表现中。这有助于定制手术策略并改善患者预后。组织病理学检查证实两种不同的腺瘤,包括一种嵌入腮腺,支持多余异位甲状旁腺瘤的诊断。
{"title":"A rare case of supernumerary and ectopic parathyroid adenoma in the parotid gland: diagnostic and surgical challenges.","authors":"R Gervasi, G L Piazzetta, G Soluri, C Scigliano, C Pelaia, N Lobello, E Allegra, E Chiarella, N Innaro","doi":"10.1186/s13000-025-01712-4","DOIUrl":"10.1186/s13000-025-01712-4","url":null,"abstract":"<p><strong>Introduction: </strong>Primary hyperparathyroidism (PHPT) is a prevalent endocrine disorder characterized by elevated parathyroid hormone (PTH) levels and hypercalcemia, most commonly caused by solitary adenomas. Double adenomas, particularly those arising in ectopic and supernumerary glands, represent a rare diagnostic and surgical challenge.</p><p><strong>Case presentation: </strong>We report the case of a 64-year-old woman presenting with symptomatic PHPT. Preoperative imaging demonstrated uptake consistent with two hyperfunctioning parathyroid adenomas, including a rare supernumerary ectopic adenoma in lesion the right parotid region. Definitive diagnosis and surgical planning were guided by 18 F-fluorocholine PET/CT, which proved superior to conventional modalities.</p><p><strong>Discussion: </strong>This case underscores the critical role of advanced imaging techniques in the localization of parathyroid adenomas, particularly in anatomically atypical sites. The combination of functional and anatomical imaging with 18 F-fluorocholine PET/CT enabled accurate detection of both lesions and informed a multidisciplinary surgical approach.</p><p><strong>Conclusion: </strong>Integration of 18 F-fluorocholine PET/CT into the diagnostic workflow enhances the precision of parathyroid adenoma localization, especially in rare ectopic presentations. This contributes to tailored surgical strategies and improved patient outcomes. Histopathological examination confirmed two distinct adenomas, including one embedded in the parotid gland, supporting the diagnosis of a supernumerary ectopic parathyroid adenoma.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"110"},"PeriodicalIF":2.3,"publicationDate":"2025-10-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12492863/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145211961","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Background: Paragangliomas are neuroendocrine tumors that often present as solitary tumors. In this case report, we describe a patient with multiple head and neck paraganglioma associated with a mediastinal paraganglioma.
Case presentation: The patient was a 46-year-old male with a history of surgical removal of a mass from the right side of the neck, who presented with dysphonia lasting two months, hoarseness, vague chest pain, and unilateral ptosis. CT angiography of the carotid arteries and thoracic aorta revealed multiple findings, including a well-defined enhancing mass measuring 33 × 39 mm in the aorto-pulmonary prevascular space, a grade I carotid body tumor on the left side of the neck, vagal paragangliomas on the right side of the neck, and a glomus jugulare tumor on the right side. These findings were collectively suggestive of multiple paragangliomas. The patient subsequently underwent surgical resection of the mediastinal tumor, and pathological examination confirmed the diagnosis of paraganglioma.
Conclusion: This report details a rare case of paraganglioma with multiple head, neck, and mediastinal involvement, emphasizing the need for thorough evaluation and genetic assessment in atypical presentations.
{"title":"Multiple paragangliomas diagnosed in head, neck, and mediastinum: a case report.","authors":"Shahab Rafieian, Hesam Amini, Omid Rezaei, Aysan Nozheh, Niloofar Ayoobi Yazdi","doi":"10.1186/s13000-025-01710-6","DOIUrl":"10.1186/s13000-025-01710-6","url":null,"abstract":"<p><strong>Background: </strong>Paragangliomas are neuroendocrine tumors that often present as solitary tumors. In this case report, we describe a patient with multiple head and neck paraganglioma associated with a mediastinal paraganglioma.</p><p><strong>Case presentation: </strong>The patient was a 46-year-old male with a history of surgical removal of a mass from the right side of the neck, who presented with dysphonia lasting two months, hoarseness, vague chest pain, and unilateral ptosis. CT angiography of the carotid arteries and thoracic aorta revealed multiple findings, including a well-defined enhancing mass measuring 33 × 39 mm in the aorto-pulmonary prevascular space, a grade I carotid body tumor on the left side of the neck, vagal paragangliomas on the right side of the neck, and a glomus jugulare tumor on the right side. These findings were collectively suggestive of multiple paragangliomas. The patient subsequently underwent surgical resection of the mediastinal tumor, and pathological examination confirmed the diagnosis of paraganglioma.</p><p><strong>Conclusion: </strong>This report details a rare case of paraganglioma with multiple head, neck, and mediastinal involvement, emphasizing the need for thorough evaluation and genetic assessment in atypical presentations.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"109"},"PeriodicalIF":2.3,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12486719/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145198775","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-30DOI: 10.1186/s13000-025-01697-0
Kui Jiang, Zhihong Dai, Jiaqiang Chen, Ziping Gao, Heyao Tong, Hongruo Liu, Gena Huang, Fang Liu, Ya Ma, Evanki Pan, Jiani Yin, Lulu Yao, Liang Wang
Background: Prostate cancer (PCa) is one of the most common malignancies affecting men, with primary treatments involving surgery, radiotherapy, and hormonal therapy. The introduction of precision medicine and next-generation sequencing (NGS) has profoundly influenced the clinical management of PCa, particularly by enabling the assessment of genetic alterations that guide treatment decisions. Liquid biopsy using diverse sample types, including plasma, urine, and semen, offers non-invasive alternatives to tissue biopsies. This study sought to compare the performance of NGS-based mutation detection across various sample types in PCa patients.
Methods: Thirty-seven PCa patients, diagnosed with intermediate to advanced stages (II-IV), were enrolled. All collected samples, including tissues (n = 34), plasma (n = 37), urine (n = 32), and seminal fluids (n = 9), underwent targeted NGS of 437 cancer-related genes. The detection sensitivity, mutational landscape, and maximum variant allele frequencies (MVAFs) were compared across different sample types.
Results: Tissue samples, serving as the gold standard, achieved a 100% mutation detection rate. Plasma and urine samples demonstrated high detection sensitivities, reaching 67.6% and 65.6%, respectively, while semen samples showed a lower detection rate of 33.3%. Mutations in FOXA1, SPOP, and TP53 were commonly detected across most sample types with comparable prevalence. AR mutations were observed with similar frequencies in plasma and semen samples, but were absent in tissue and urine samples. The average MVAFs were at similar levels among tissue, plasma, urine, and semen, although urine sediment samples exhibited the lowest MVAFs. Advanced disease stages correlated with increased circulating tumor DNA (ctDNA) detection in both plasma and urine samples. No significant survival advantage associated with ctDNA negativity was observed, likely due to the small sample size.
Conclusions: This study validates the utility of urine and plasma samples as non-invasive and sensitive liquid biopsy options for PCa, showing comparable ctDNA detection rates. Seminal fluid samples also demonstrate potential, despite current sampling challenges. These findings offer insights into the advantages of different sampling methods for PCa detection and reinforce the clinical utility of liquid biopsies in PCa management.
{"title":"Evaluating sensitivity of NGS-based mutation detection across diverse sample types in prostate cancer.","authors":"Kui Jiang, Zhihong Dai, Jiaqiang Chen, Ziping Gao, Heyao Tong, Hongruo Liu, Gena Huang, Fang Liu, Ya Ma, Evanki Pan, Jiani Yin, Lulu Yao, Liang Wang","doi":"10.1186/s13000-025-01697-0","DOIUrl":"10.1186/s13000-025-01697-0","url":null,"abstract":"<p><strong>Background: </strong>Prostate cancer (PCa) is one of the most common malignancies affecting men, with primary treatments involving surgery, radiotherapy, and hormonal therapy. The introduction of precision medicine and next-generation sequencing (NGS) has profoundly influenced the clinical management of PCa, particularly by enabling the assessment of genetic alterations that guide treatment decisions. Liquid biopsy using diverse sample types, including plasma, urine, and semen, offers non-invasive alternatives to tissue biopsies. This study sought to compare the performance of NGS-based mutation detection across various sample types in PCa patients.</p><p><strong>Methods: </strong>Thirty-seven PCa patients, diagnosed with intermediate to advanced stages (II-IV), were enrolled. All collected samples, including tissues (n = 34), plasma (n = 37), urine (n = 32), and seminal fluids (n = 9), underwent targeted NGS of 437 cancer-related genes. The detection sensitivity, mutational landscape, and maximum variant allele frequencies (MVAFs) were compared across different sample types.</p><p><strong>Results: </strong>Tissue samples, serving as the gold standard, achieved a 100% mutation detection rate. Plasma and urine samples demonstrated high detection sensitivities, reaching 67.6% and 65.6%, respectively, while semen samples showed a lower detection rate of 33.3%. Mutations in FOXA1, SPOP, and TP53 were commonly detected across most sample types with comparable prevalence. AR mutations were observed with similar frequencies in plasma and semen samples, but were absent in tissue and urine samples. The average MVAFs were at similar levels among tissue, plasma, urine, and semen, although urine sediment samples exhibited the lowest MVAFs. Advanced disease stages correlated with increased circulating tumor DNA (ctDNA) detection in both plasma and urine samples. No significant survival advantage associated with ctDNA negativity was observed, likely due to the small sample size.</p><p><strong>Conclusions: </strong>This study validates the utility of urine and plasma samples as non-invasive and sensitive liquid biopsy options for PCa, showing comparable ctDNA detection rates. Seminal fluid samples also demonstrate potential, despite current sampling challenges. These findings offer insights into the advantages of different sampling methods for PCa detection and reinforce the clinical utility of liquid biopsies in PCa management.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"108"},"PeriodicalIF":2.3,"publicationDate":"2025-09-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12486888/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145198789","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-29DOI: 10.1186/s13000-025-01709-z
Shengwei Ji, Weijie Chen, Beiwei Zhu, Maowei Pei
Objectives: To report a rare case of adult gastroduodenal intussusception caused by a gastric gastrointestinal stromal tumor (GIST) and review its diagnostic and therapeutic approaches. METHODS: We present a 68-year-old female with gastroduodenal intussusception secondary to a gastric GIST, diagnosed through combined endoscopy and computed tomography (CT). A systematic PubMed review identified 28 published cases, which were analysis for clinical presentation, imaging findings, and management strategies.
Results: The patient initially underwent laparoscopic-endoscopic cooperative surgery, which was unsuccessful and required conversion to open partial gastrectomy. Intraoperative findings confirmed a fundus mass extending into the duodenum, with histopathology confirming a low-risk GIST. Among the reviewed cases, all involved GISTs of gastric origin. Diagnostic evaluation consistently relied on CT and endoscopy, with surgical approaches varying based on tumor characteristics.
Conclusions: Gastric GISTs are a rare but clinically significant cause of adult gastroduodenal intussusception, typically necessitating surgical intervention. Multimodal imaging, particularly CT, plays a crucial role in preoperative diagnosis, while histopathological examination remains essential for definitive diagnosis and risk stratification. Treatment should be individualized based on tumor size, location, and patient factors.
{"title":"Gastric endophytic gastrointestinal stromal tumor (GIST) as a rare cause of gastroduodenal intussusception: case report and literature review.","authors":"Shengwei Ji, Weijie Chen, Beiwei Zhu, Maowei Pei","doi":"10.1186/s13000-025-01709-z","DOIUrl":"10.1186/s13000-025-01709-z","url":null,"abstract":"<p><strong>Objectives: </strong>To report a rare case of adult gastroduodenal intussusception caused by a gastric gastrointestinal stromal tumor (GIST) and review its diagnostic and therapeutic approaches. METHODS: We present a 68-year-old female with gastroduodenal intussusception secondary to a gastric GIST, diagnosed through combined endoscopy and computed tomography (CT). A systematic PubMed review identified 28 published cases, which were analysis for clinical presentation, imaging findings, and management strategies.</p><p><strong>Results: </strong>The patient initially underwent laparoscopic-endoscopic cooperative surgery, which was unsuccessful and required conversion to open partial gastrectomy. Intraoperative findings confirmed a fundus mass extending into the duodenum, with histopathology confirming a low-risk GIST. Among the reviewed cases, all involved GISTs of gastric origin. Diagnostic evaluation consistently relied on CT and endoscopy, with surgical approaches varying based on tumor characteristics.</p><p><strong>Conclusions: </strong>Gastric GISTs are a rare but clinically significant cause of adult gastroduodenal intussusception, typically necessitating surgical intervention. Multimodal imaging, particularly CT, plays a crucial role in preoperative diagnosis, while histopathological examination remains essential for definitive diagnosis and risk stratification. Treatment should be individualized based on tumor size, location, and patient factors.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"107"},"PeriodicalIF":2.3,"publicationDate":"2025-09-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12482829/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145191352","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-26DOI: 10.1186/s13000-025-01707-1
Chong Ge, Yi Shi, Wei Wang, Anli Zhang, Mengqi Huang, Fang Zhao, Ao Li, Zhenzhong Feng, Minghui Wang, Haibo Wu
Background: Accurate assessment of programmed death-ligand 1 (PD-L1) immunohistochemical (IHC) expression is critical for immunotherapy in patients with non-small cell lung cancer (NSCLC). Yet, interpreting its staining is challenging, time-consuming, and causes inter-observer variability, potentially mis-stratifying patients. This necessitates the development of an artificial intelligence (AI) model to effectively quantify PD-L1 expression. Hence, we developed an AI-based deep-learning approach to automatically assess PD-L1 expression in NSCLC using IHC 22C3 assay-stained whole slide images (WSIs).
Methods: A total of 706 patients with NSCLC were included in this study and 1212 WSIs were collected from three distinct study cohorts. We accurately matched the hematoxylin and eosin-stained images of the internal dataset with the IHC WSIs. Foreground regions containing tumor tissue were extracted from WSIs, and a multi-granular multiple-instance learning approach employing instance embeddings with coarse and fine granularities was implemented to extract patch-level morphological features. A multi-grained expression interpreter-based model aggregated these features to stratify PD-L1 expression status.
Results: The model showed strong interpretive ability in all three cohorts and wide applicability to different specimen types. The macro-average area under the receiver operating characteristic curve (AUC) were 0.940/0.915/0.944 for surgical specimens, 0.955/0.844/0.865 for biopsy specimens, and 0.901/0.958/0.883 for metastases.
Conclusion: This study emphasizes the potential benefits of deep learning in automatically, rapidly, and accurately inferring PD-L1 expression from complex IHC images. It also showcases how AI frameworks can improve routine digital pathology workflows in current PD-L1 detection methods.
{"title":"Artificial Intelligence-driven image analysis for standardised programmed death-ligand 1 expression evaluation in non-small cell lung cancer.","authors":"Chong Ge, Yi Shi, Wei Wang, Anli Zhang, Mengqi Huang, Fang Zhao, Ao Li, Zhenzhong Feng, Minghui Wang, Haibo Wu","doi":"10.1186/s13000-025-01707-1","DOIUrl":"10.1186/s13000-025-01707-1","url":null,"abstract":"<p><strong>Background: </strong>Accurate assessment of programmed death-ligand 1 (PD-L1) immunohistochemical (IHC) expression is critical for immunotherapy in patients with non-small cell lung cancer (NSCLC). Yet, interpreting its staining is challenging, time-consuming, and causes inter-observer variability, potentially mis-stratifying patients. This necessitates the development of an artificial intelligence (AI) model to effectively quantify PD-L1 expression. Hence, we developed an AI-based deep-learning approach to automatically assess PD-L1 expression in NSCLC using IHC 22C3 assay-stained whole slide images (WSIs).</p><p><strong>Methods: </strong>A total of 706 patients with NSCLC were included in this study and 1212 WSIs were collected from three distinct study cohorts. We accurately matched the hematoxylin and eosin-stained images of the internal dataset with the IHC WSIs. Foreground regions containing tumor tissue were extracted from WSIs, and a multi-granular multiple-instance learning approach employing instance embeddings with coarse and fine granularities was implemented to extract patch-level morphological features. A multi-grained expression interpreter-based model aggregated these features to stratify PD-L1 expression status.</p><p><strong>Results: </strong>The model showed strong interpretive ability in all three cohorts and wide applicability to different specimen types. The macro-average area under the receiver operating characteristic curve (AUC) were 0.940/0.915/0.944 for surgical specimens, 0.955/0.844/0.865 for biopsy specimens, and 0.901/0.958/0.883 for metastases.</p><p><strong>Conclusion: </strong>This study emphasizes the potential benefits of deep learning in automatically, rapidly, and accurately inferring PD-L1 expression from complex IHC images. It also showcases how AI frameworks can improve routine digital pathology workflows in current PD-L1 detection methods.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"106"},"PeriodicalIF":2.3,"publicationDate":"2025-09-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465877/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145174078","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Medical healthcare has advanced substantially due to advancements in Artificial Intelligence (AI) techniques for early disease detection alongside support for clinical decisions. However, a gap exists in widespread adoption of results of these algorithms by public due to black box nature of models. The undisclosed nature of these systems creates fundamental obstacles within medical sectors that handle crucial cases because medical practitioners needs to understand the reasoning behind the outcome of a particular disease. A hybrid Machine Learning (ML) framework integrating Explainable AI (XAI) strategies that will improve both predictive performance and interpretability is explored in proposed work. The system leverages Decision Trees, Naive Bayes, Random Forests and XGBoost algorithms to predict the medical condition risks of Diabetes, Anaemia, Thalassemia, Heart Disease, Thrombocytopenia within its framework. SHAP (SHapley Additive exPlanations) together with LIME (Local Interpretable Model-agnostic Explanations) adds functionality to the proposed system by displaying important features contributing to each prediction. The framework upholds an accuracy of 99.2% besides the ability to provide understandable explanations for interpretation of model outputs. The performance combined with interpretability from the framework enables clinical practitioners to make decisions through an understanding of AI-generated outputs thereby reducing distrust in AI-driven healthcare.
{"title":"Fostering trust and interpretability: integrating explainable AI (XAI) with machine learning for enhanced disease prediction and decision transparency.","authors":"Renuka Agrawal, Tawishi Gupta, Shaurya Gupta, Sakshi Chauhan, Prisha Patel, Safa Hamdare","doi":"10.1186/s13000-025-01686-3","DOIUrl":"10.1186/s13000-025-01686-3","url":null,"abstract":"<p><p>Medical healthcare has advanced substantially due to advancements in Artificial Intelligence (AI) techniques for early disease detection alongside support for clinical decisions. However, a gap exists in widespread adoption of results of these algorithms by public due to black box nature of models. The undisclosed nature of these systems creates fundamental obstacles within medical sectors that handle crucial cases because medical practitioners needs to understand the reasoning behind the outcome of a particular disease. A hybrid Machine Learning (ML) framework integrating Explainable AI (XAI) strategies that will improve both predictive performance and interpretability is explored in proposed work. The system leverages Decision Trees, Naive Bayes, Random Forests and XGBoost algorithms to predict the medical condition risks of Diabetes, Anaemia, Thalassemia, Heart Disease, Thrombocytopenia within its framework. SHAP (SHapley Additive exPlanations) together with LIME (Local Interpretable Model-agnostic Explanations) adds functionality to the proposed system by displaying important features contributing to each prediction. The framework upholds an accuracy of 99.2% besides the ability to provide understandable explanations for interpretation of model outputs. The performance combined with interpretability from the framework enables clinical practitioners to make decisions through an understanding of AI-generated outputs thereby reducing distrust in AI-driven healthcare.</p>","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"105"},"PeriodicalIF":2.3,"publicationDate":"2025-09-25","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12465982/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145148285","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-09-16DOI: 10.1186/s13000-025-01684-5
Fiona R Kolbinger, Omar S M El Nahhas, Maja Carina Nackenhorst, Christine Brostjan, Wolf Eilenberg, Albert Busch, Jakob Nikolas Kather
{"title":"Histopathological evaluation of abdominal aortic aneurysms with deep learning.","authors":"Fiona R Kolbinger, Omar S M El Nahhas, Maja Carina Nackenhorst, Christine Brostjan, Wolf Eilenberg, Albert Busch, Jakob Nikolas Kather","doi":"10.1186/s13000-025-01684-5","DOIUrl":"10.1186/s13000-025-01684-5","url":null,"abstract":"","PeriodicalId":11237,"journal":{"name":"Diagnostic Pathology","volume":"20 1","pages":"104"},"PeriodicalIF":2.3,"publicationDate":"2025-09-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12439358/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145069231","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}