Pub Date : 2023-06-20DOI: 10.1080/09670262.2023.2216259
Aditee Mitra, K. Flynn, D. Stoecker, J. Raven
Analysis of trait trade-offs, through which physiological traits requiring common resources are ‘traded’ to optimize competitive advantage, provides a route to simplify and more readily understand the complexities of ecology. The concept of trait trade-offs has found favour in plankton research, especially directed at phytoplankton, defined here as phototrophs incapable of phagotrophy. Mixoplankton, defined as protists that combine phototrophy and phagotrophy, are now recognized as being widespread and significant members of the protist plankton community; many photoflagellate ‘phytoplankton’ are actually mixoplankton, as are many ‘(microbial) zooplankton’. Mixoplankton might be expected to be dominant, being able to exploit different trophic strategies while simultaneously eliminating competitors. That mixoplankton are not dominant suggests that physiological trait trade-offs erode their apparent competitive edge. We present a systematic analysis of potential trait trade-offs in phototrophic protists focused on mixoplankton. We find no clear evidence to support trait trade-off arguments in plankton research, except perhaps for acquired phototrophy in mixoplanktonic ciliates versus zooplanktonic ciliates. Our findings suggest that the presence of various mixoplankton throughout the surface ocean waters is most likely explained by factors other than trait trade-offs. Diversities in mixoplankton form and function thus reflect that evolution of these organisms from very different lineages, provide them with advantages to function competitively in mature ecosystems with complex trophic interplay. Indeed, the complexity of those lineages is inconsistent with core trait trade-off definitions; there is no single ancestral mixoplankton nor a common environment supporting trait-trade-off-directed evolution. HIGHLIGHTS ● Trait trade-offs do not explain the breadth of mixoplankton ecophysiological capabilities. ● Diversity of mixoplankton form and function reflects phylogenetic diversity. ● Only one potential trait trade-off was identified which was for ciliates that steal chloroplasts.
{"title":"Trait trade-offs in phagotrophic microalgae: the mixoplankton conundrum","authors":"Aditee Mitra, K. Flynn, D. Stoecker, J. Raven","doi":"10.1080/09670262.2023.2216259","DOIUrl":"https://doi.org/10.1080/09670262.2023.2216259","url":null,"abstract":"Analysis of trait trade-offs, through which physiological traits requiring common resources are ‘traded’ to optimize competitive advantage, provides a route to simplify and more readily understand the complexities of ecology. The concept of trait trade-offs has found favour in plankton research, especially directed at phytoplankton, defined here as phototrophs incapable of phagotrophy. Mixoplankton, defined as protists that combine phototrophy and phagotrophy, are now recognized as being widespread and significant members of the protist plankton community; many photoflagellate ‘phytoplankton’ are actually mixoplankton, as are many ‘(microbial) zooplankton’. Mixoplankton might be expected to be dominant, being able to exploit different trophic strategies while simultaneously eliminating competitors. That mixoplankton are not dominant suggests that physiological trait trade-offs erode their apparent competitive edge. We present a systematic analysis of potential trait trade-offs in phototrophic protists focused on mixoplankton. We find no clear evidence to support trait trade-off arguments in plankton research, except perhaps for acquired phototrophy in mixoplanktonic ciliates versus zooplanktonic ciliates. Our findings suggest that the presence of various mixoplankton throughout the surface ocean waters is most likely explained by factors other than trait trade-offs. Diversities in mixoplankton form and function thus reflect that evolution of these organisms from very different lineages, provide them with advantages to function competitively in mature ecosystems with complex trophic interplay. Indeed, the complexity of those lineages is inconsistent with core trait trade-off definitions; there is no single ancestral mixoplankton nor a common environment supporting trait-trade-off-directed evolution. HIGHLIGHTS ● Trait trade-offs do not explain the breadth of mixoplankton ecophysiological capabilities. ● Diversity of mixoplankton form and function reflects phylogenetic diversity. ● Only one potential trait trade-off was identified which was for ciliates that steal chloroplasts.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45934653","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-06-15DOI: 10.1080/09670262.2023.2216257
Thomas Bacchetta, P. López‐García, A. Gutiérrez-Preciado, Neha Mehta, F. Skouri-Panet, K. Benzerara, M. Ciobanu, N. Yubuki, R. Tavera, D. Moreira
{"title":"Description of Gloeomargarita ahousahtiae sp. nov. (Gloeomargaritales), a thermophilic cyanobacterium with intracellular carbonate inclusions","authors":"Thomas Bacchetta, P. López‐García, A. Gutiérrez-Preciado, Neha Mehta, F. Skouri-Panet, K. Benzerara, M. Ciobanu, N. Yubuki, R. Tavera, D. Moreira","doi":"10.1080/09670262.2023.2216257","DOIUrl":"https://doi.org/10.1080/09670262.2023.2216257","url":null,"abstract":"","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42641099","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-06-05DOI: 10.1080/09670262.2023.2212030
P. Cresson, S. Ruitton, F. Noisette, M. Harmelin-Vivien
{"title":"Isotopic and biochemical composition of Western Mediterranean macroalgae","authors":"P. Cresson, S. Ruitton, F. Noisette, M. Harmelin-Vivien","doi":"10.1080/09670262.2023.2212030","DOIUrl":"https://doi.org/10.1080/09670262.2023.2212030","url":null,"abstract":"","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-06-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41551139","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
{"title":"Temporal model of photosynthesis by measuring the instantaneous photosynthetic rate of cyanobacteria under pulsed light","authors":"Xiaolin Zhang, Jiaohong Zhao, Wenqi Li, Jiali Yang, Weimin Ma, Muqing Liu","doi":"10.1080/09670262.2023.2193598","DOIUrl":"https://doi.org/10.1080/09670262.2023.2193598","url":null,"abstract":"","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41977306","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-04-03DOI: 10.1080/09670262.2023.2183990
Thoriq Teja Samudra, Hiroaki Takahashi, Y. Amano, M. Machida
ABSTRACT Cyanobacterial blooms are widely known to cause problems in the aquatic environment, and their appearance has become more frequent due to global warming. Microcystis is one of the most widespread and dominant bloom-forming cyanobacterial genera, largely because Microcystis has the ability to control its buoyancy. A buoyancy experiment conducted on Microcystis sp. isolated from cyanobacterial blooms in Lake Senba, Japan, showed that buoyancy could be controlled using a combination of preculture under the dark conditions and the addition of powdered tightly bound extracellular polysaccharides (TB-EPS) and metal cations (Ca2+ and Mg2+). Preculture under the dark conditions, 96 h in length were the most effective treatment to reduce the cellular carbohydrate content of Microcystis and simultaneously increase its buoyancy. The addition of TB-EPS, Ca2+ and Mg2+ ions increased the colony size of Microcystis and enhanced buoyancy in precultures under both dark and light conditions. Thus, the buoyancy of Microcystis can be controlled by reducing its cellular carbohydrate content by preculturing it in dark conditions for 96 h and increasing the colony size with the addition of 100 mg l−1 EPS, 80 mg l−1 Ca2+ and 80 mg l−1 Mg2+. This study contributes to establishing a novel removal method for cyanobacterial blooms dominated by Microcystis, especially in water treatment facilities. HIGHLIGHTS • Microcystis buoyancy was controlled by decreasing cellular carbohydrate content using preculture under dark conditions. • The addition of TB-EPS, Ca2+ and Mg2+ ions increased the colony size of Microcystis and enhanced the buoyancy in precultures under both dark and light conditions. • This represents a novel removal method for cyanobacterial blooms in water treatment facilities.
{"title":"Buoyancy control of Microcystis using different light regimes combined with extracellular polysaccharides and cationic ions","authors":"Thoriq Teja Samudra, Hiroaki Takahashi, Y. Amano, M. Machida","doi":"10.1080/09670262.2023.2183990","DOIUrl":"https://doi.org/10.1080/09670262.2023.2183990","url":null,"abstract":"ABSTRACT Cyanobacterial blooms are widely known to cause problems in the aquatic environment, and their appearance has become more frequent due to global warming. Microcystis is one of the most widespread and dominant bloom-forming cyanobacterial genera, largely because Microcystis has the ability to control its buoyancy. A buoyancy experiment conducted on Microcystis sp. isolated from cyanobacterial blooms in Lake Senba, Japan, showed that buoyancy could be controlled using a combination of preculture under the dark conditions and the addition of powdered tightly bound extracellular polysaccharides (TB-EPS) and metal cations (Ca2+ and Mg2+). Preculture under the dark conditions, 96 h in length were the most effective treatment to reduce the cellular carbohydrate content of Microcystis and simultaneously increase its buoyancy. The addition of TB-EPS, Ca2+ and Mg2+ ions increased the colony size of Microcystis and enhanced buoyancy in precultures under both dark and light conditions. Thus, the buoyancy of Microcystis can be controlled by reducing its cellular carbohydrate content by preculturing it in dark conditions for 96 h and increasing the colony size with the addition of 100 mg l−1 EPS, 80 mg l−1 Ca2+ and 80 mg l−1 Mg2+. This study contributes to establishing a novel removal method for cyanobacterial blooms dominated by Microcystis, especially in water treatment facilities. HIGHLIGHTS • Microcystis buoyancy was controlled by decreasing cellular carbohydrate content using preculture under dark conditions. • The addition of TB-EPS, Ca2+ and Mg2+ ions increased the colony size of Microcystis and enhanced the buoyancy in precultures under both dark and light conditions. • This represents a novel removal method for cyanobacterial blooms in water treatment facilities.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-04-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"45450290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-03-28DOI: 10.1080/09670262.2023.2183265
H. Kawai, Kazusa Takeuchi, T. Hanyuda, J. Brodie, Robert J. Mrowicki, K. Miller, W. Nelson
ABSTRACT A molecular phylogeny of Tinocladia and Eudesme based on specimens covering a large proportion of the known species was done using mitochondrial cox1 and cox3, chloroplast atpB, psaA, psbA and rbcL genes and 5.8S rDNA and its ITS2 region sequences. The phylogeny revealed a close phylogenetic relationship between the two genera and the occurrence of a cryptic species within the generitype T. crassa. Eudesme species (E. borealis, E. shandongensis and the generitype E. virescens) showed a sister relationship with the northern hemisphere Tinocladia (T. crassa, including a cryptic sister species T. pseudocrassa sp. nov., and T. sanrikuensis), whereas southern hemisphere Tinocladia (T. australis, T. falklandica, T. novae-zelandiae, and a cryptic species from New Zealand) nested in the Eudesme clade. Morphologically, Tinocladia species have been distinguished from Eudesme by their denser medullary filaments and more extensive subcortical layer, but our molecular phylogenetic analyses suggest that these features do not correlate with genetic differences. The cox3 sequence divergence between northern hemisphere Tinocladia and the lineage that includes Eudesme and southern hemisphere Tinocladia was comparable to or smaller than those within selected ectocarpalean genera. We therefore propose to merge Tinocladia with Eudesme and resurrect Eudesme crassa (Suringar) Okamura for T. crassa. Although the two independent lineages of T. crassa do not show marked morphological differences, they are genetically isolated even in sympatric populations. We therefore propose to treat them as independent species. In this paper we neotypify Tinocladia crassa (=Eudesme crassa), describe E. pseudocrassa sp. nov., and determine that the Californian population of E. crassa is an introduction from Northeast Asia. HIGHLIGHTS •A taxonomic revision of Eudesme and Tinocladia, based on genetic and morpho-anatomy, provides evidence to merge Tinocladia with Eudesme. •The finding of cryptic species in New Zealand highlights the need for further taxonomic studies in this region. •The genetic data have revealed the occurrence of a cryptic species within T. crassa in Japan.
{"title":"Taxonomic revision of Tinocladia (Ectocarpales s.l., Phaeophyceae): merger of Tinocladia with Eudesme and description of E. pseudocrassa sp. nov","authors":"H. Kawai, Kazusa Takeuchi, T. Hanyuda, J. Brodie, Robert J. Mrowicki, K. Miller, W. Nelson","doi":"10.1080/09670262.2023.2183265","DOIUrl":"https://doi.org/10.1080/09670262.2023.2183265","url":null,"abstract":"ABSTRACT A molecular phylogeny of Tinocladia and Eudesme based on specimens covering a large proportion of the known species was done using mitochondrial cox1 and cox3, chloroplast atpB, psaA, psbA and rbcL genes and 5.8S rDNA and its ITS2 region sequences. The phylogeny revealed a close phylogenetic relationship between the two genera and the occurrence of a cryptic species within the generitype T. crassa. Eudesme species (E. borealis, E. shandongensis and the generitype E. virescens) showed a sister relationship with the northern hemisphere Tinocladia (T. crassa, including a cryptic sister species T. pseudocrassa sp. nov., and T. sanrikuensis), whereas southern hemisphere Tinocladia (T. australis, T. falklandica, T. novae-zelandiae, and a cryptic species from New Zealand) nested in the Eudesme clade. Morphologically, Tinocladia species have been distinguished from Eudesme by their denser medullary filaments and more extensive subcortical layer, but our molecular phylogenetic analyses suggest that these features do not correlate with genetic differences. The cox3 sequence divergence between northern hemisphere Tinocladia and the lineage that includes Eudesme and southern hemisphere Tinocladia was comparable to or smaller than those within selected ectocarpalean genera. We therefore propose to merge Tinocladia with Eudesme and resurrect Eudesme crassa (Suringar) Okamura for T. crassa. Although the two independent lineages of T. crassa do not show marked morphological differences, they are genetically isolated even in sympatric populations. We therefore propose to treat them as independent species. In this paper we neotypify Tinocladia crassa (=Eudesme crassa), describe E. pseudocrassa sp. nov., and determine that the Californian population of E. crassa is an introduction from Northeast Asia. HIGHLIGHTS •A taxonomic revision of Eudesme and Tinocladia, based on genetic and morpho-anatomy, provides evidence to merge Tinocladia with Eudesme. •The finding of cryptic species in New Zealand highlights the need for further taxonomic studies in this region. •The genetic data have revealed the occurrence of a cryptic species within T. crassa in Japan.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-03-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"46247463","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-03-22DOI: 10.1080/09670262.2023.2169767
A. Skriptsova, S. Shibneva, A. Semenchenko
ABSTRACT Traditional morphology-based investigations of the red algal genera Devaleraea and Palmaria (Palmariaceae, Rhodophyta) fail to provide accurate accounts of diversity and distribution for species from the Russian coast of the north-western Pacific. Consequently, there is much disagreement and taxonomic uncertainty regarding several species. To resolve these issues we conducted a molecular-assisted investigation that included a DNA barcode survey (COI-5’) and multilocus (COI-5’, cob, psaA, ITS) phylogenetic analyses. Our analyses indicate that diversity was previously underestimated for the Devaleraea/Palmaria complex. We describe three additional species of Devaleraea: D. sakhalinensis sp. nov., D. kussakinii sp. nov. and D. urupiana sp. nov. We consider D. titlyanoviorum to be an alga with abundant proliferations from the margins, branching to several orders, that is known only from Kunashir Island. Algae from Sakhalin Island and the mainland coast of the Sea of Japan previously identified as D. titlyanoviorum are described here as D. sakhalinensis. We confirmed that the genus Palmaria is not monotypic. It includes at least two species: P. palmata in the North Atlantic and P. moniliformis in the north-western Pacific. We expand the known ranges of D. callophylloides, D. mollis and P. hecatensis in the north-western Pacific southwards and find that D. stenogona is confined to the northern part of the Sea of Japan. The distribution patterns of species of the genera Devaleraea and Palmaria are discussed in relation to the oceanography of the north-western Pacific. HIGHLIGHTS Three new species of the genus Devaleraea are proposed. The genus Palmaria is not monotypic and includes at least two species, P. moniliformis and P. palmata.
{"title":"Morphological and molecular investigations shed light on diversity and distribution of Palmariaceae in the north-western Pacific","authors":"A. Skriptsova, S. Shibneva, A. Semenchenko","doi":"10.1080/09670262.2023.2169767","DOIUrl":"https://doi.org/10.1080/09670262.2023.2169767","url":null,"abstract":"ABSTRACT Traditional morphology-based investigations of the red algal genera Devaleraea and Palmaria (Palmariaceae, Rhodophyta) fail to provide accurate accounts of diversity and distribution for species from the Russian coast of the north-western Pacific. Consequently, there is much disagreement and taxonomic uncertainty regarding several species. To resolve these issues we conducted a molecular-assisted investigation that included a DNA barcode survey (COI-5’) and multilocus (COI-5’, cob, psaA, ITS) phylogenetic analyses. Our analyses indicate that diversity was previously underestimated for the Devaleraea/Palmaria complex. We describe three additional species of Devaleraea: D. sakhalinensis sp. nov., D. kussakinii sp. nov. and D. urupiana sp. nov. We consider D. titlyanoviorum to be an alga with abundant proliferations from the margins, branching to several orders, that is known only from Kunashir Island. Algae from Sakhalin Island and the mainland coast of the Sea of Japan previously identified as D. titlyanoviorum are described here as D. sakhalinensis. We confirmed that the genus Palmaria is not monotypic. It includes at least two species: P. palmata in the North Atlantic and P. moniliformis in the north-western Pacific. We expand the known ranges of D. callophylloides, D. mollis and P. hecatensis in the north-western Pacific southwards and find that D. stenogona is confined to the northern part of the Sea of Japan. The distribution patterns of species of the genera Devaleraea and Palmaria are discussed in relation to the oceanography of the north-western Pacific. HIGHLIGHTS Three new species of the genus Devaleraea are proposed. The genus Palmaria is not monotypic and includes at least two species, P. moniliformis and P. palmata.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-03-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"42974793","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-03-03DOI: 10.1080/09670262.2023.2169768
Valter Loureiro de Araújo, Márcio Ferreira dos Santos, Alessandra Selbach Schnadelbach, José Marcos de Castro Nunes, Taiara Aguiar Caires
ABSTRACT Brazil’s Atlantic Ocean coast is approximately 7500 km long, with several coastal and oceanic islands. The cyanoflora of this area is not commonly included in published studies, resulting in an underestimated diversity. Here, we isolated and analysed through a polyphasic approach three strains of marine benthic homocyted cyanobacteria from Brazilian coastal islands with two distinct climates: ALCB 132761 and ALCB 132774 are from the tropics, and ALCB 132760 from the subtropics. These strains presented differences in their cell morphometry and presence/absence of sheath, but were similar in apical cell shape, colour, and form of the trichome. In the 16S rRNA phylogeny, Maximum likelihood (ML) and Bayesian posterior probability (PP) analyses placed our strains in two robust clades. We propose that Microlinema tropicalium gen. et sp. nov. (ALCB 132774) is placed in the Leptolyngbyaceae, and Insularia amadoi gen. et sp. nov. (ALCB 132761) and Salileptolyngbya insularis sp. nov. (ALCB 132760) in Pseudanabaenaceae. The 16S-23S Internal Transcribed Spacer (ITS) was used to reconstruct Box B and D1-D1’ secondary structures, which were treated as autapomorphic characters. The new thin homocyted benthic cyanobacterial taxa described here from marine coastal islands of Brazil help to disentangle the Leptolyngbyaceae and Pseudanabaenaceae. HIGHLIGHTS •Polyphasic description of two new Brazilian genera Insularia and Microlinema. •Expansion of Salileptolyngbya: recognition of one species for the Atlantic Ocean. •Elucidation of benthic genera in the Leptolyngbyaceae and Pseudanabaenaceae.
{"title":"New genera of thin homocyted cyanobacteria from Brazilian tropical and subtropical marine islands","authors":"Valter Loureiro de Araújo, Márcio Ferreira dos Santos, Alessandra Selbach Schnadelbach, José Marcos de Castro Nunes, Taiara Aguiar Caires","doi":"10.1080/09670262.2023.2169768","DOIUrl":"https://doi.org/10.1080/09670262.2023.2169768","url":null,"abstract":"ABSTRACT Brazil’s Atlantic Ocean coast is approximately 7500 km long, with several coastal and oceanic islands. The cyanoflora of this area is not commonly included in published studies, resulting in an underestimated diversity. Here, we isolated and analysed through a polyphasic approach three strains of marine benthic homocyted cyanobacteria from Brazilian coastal islands with two distinct climates: ALCB 132761 and ALCB 132774 are from the tropics, and ALCB 132760 from the subtropics. These strains presented differences in their cell morphometry and presence/absence of sheath, but were similar in apical cell shape, colour, and form of the trichome. In the 16S rRNA phylogeny, Maximum likelihood (ML) and Bayesian posterior probability (PP) analyses placed our strains in two robust clades. We propose that Microlinema tropicalium gen. et sp. nov. (ALCB 132774) is placed in the Leptolyngbyaceae, and Insularia amadoi gen. et sp. nov. (ALCB 132761) and Salileptolyngbya insularis sp. nov. (ALCB 132760) in Pseudanabaenaceae. The 16S-23S Internal Transcribed Spacer (ITS) was used to reconstruct Box B and D1-D1’ secondary structures, which were treated as autapomorphic characters. The new thin homocyted benthic cyanobacterial taxa described here from marine coastal islands of Brazil help to disentangle the Leptolyngbyaceae and Pseudanabaenaceae. HIGHLIGHTS •Polyphasic description of two new Brazilian genera Insularia and Microlinema. •Expansion of Salileptolyngbya: recognition of one species for the Atlantic Ocean. •Elucidation of benthic genera in the Leptolyngbyaceae and Pseudanabaenaceae.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-03-03","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44683861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-02-24DOI: 10.1080/09670262.2023.2164907
Laura Lagourgue, F. Rousseau, M. Zubia, C. Payri
ABSTRACT Avrainvillea is a green macroalgal genus of the family Dichotomosiphonaceae (order Bryopsidales). Many species have been morphologically described, but few studies have addressed the genetic diversity of this genus. Based on a rich collection of specimens from the tropical Western Atlantic, Indian and Pacific Oceans, we aimed to (1) reassess Avrainvillea species diversity through species delimitation analyses, (2) update their distribution ranges, (3) reconstruct the species phylogenetic relationships, based on a concatenated multilocus matrix (tufA, rbcL and 18S rDNA) and (4) revise their taxonomy and describe new species where necessary. Our species delimitation approach highlighted 23 secondary species hypotheses in our collection, including nine known and currently accepted species, four species complexes (A. amadelpha, A. lacerata, A. erecta-obscura and A. mazei-nigricans), and eight new species for which we provide descriptions: A. laciniata (Papua New Guinea), A. minima and A. pyrochroma (Madagascar), A. mollis and A. kanakiensis (New Caledonia), A. pavonina (Fiji), A. spongiosa (Pacific) and A. corticata (Indo-Pacific). We also propose the resurrection of A. gracillima Børgesen, the reinstatement of Avrainvillea lacerata var. robustior A.Gepp & E.S.Gepp, and the synonymy of A. rotumensis A.D.R.N’Yeurt, D.S.Littler & Littler with A. pacifica A.Gepp & E.S.Gepp. We complemented the taxonomic work by providing a contemporary dichotomous key for morphological identification of all extant species. Our multilocus phylogeny included 25 species of Dichotomosiphonaceae and recovered Avrainvillea as a polyphyletic group, divided into three distinct clades, with Cladocephalus luteofuscus positioned within the group. The species determined using the species delimitation approach were all monophyletic and 19 of them were highly supported. For the first time, this study also provided genetic sequences for A. asarifolia, A. clavatiramea, A. digitata, A. elliottii, A. fulva, A. gracillima, A. geppiorum, A. pacifica and A. obscura. HIGHLIGHTS • Avrainvillea is not monophyletic. • Reassessment of Avrainvillea species diversity delimited 23 secondary species hypotheses. • Eight new species of Avrainvillea were discovered in the Indo-Pacific.
{"title":"Diversity of the genus Avrainvillea (Dichotomosiphonaceae, Chlorophyta): new insights and eight new species","authors":"Laura Lagourgue, F. Rousseau, M. Zubia, C. Payri","doi":"10.1080/09670262.2023.2164907","DOIUrl":"https://doi.org/10.1080/09670262.2023.2164907","url":null,"abstract":"ABSTRACT Avrainvillea is a green macroalgal genus of the family Dichotomosiphonaceae (order Bryopsidales). Many species have been morphologically described, but few studies have addressed the genetic diversity of this genus. Based on a rich collection of specimens from the tropical Western Atlantic, Indian and Pacific Oceans, we aimed to (1) reassess Avrainvillea species diversity through species delimitation analyses, (2) update their distribution ranges, (3) reconstruct the species phylogenetic relationships, based on a concatenated multilocus matrix (tufA, rbcL and 18S rDNA) and (4) revise their taxonomy and describe new species where necessary. Our species delimitation approach highlighted 23 secondary species hypotheses in our collection, including nine known and currently accepted species, four species complexes (A. amadelpha, A. lacerata, A. erecta-obscura and A. mazei-nigricans), and eight new species for which we provide descriptions: A. laciniata (Papua New Guinea), A. minima and A. pyrochroma (Madagascar), A. mollis and A. kanakiensis (New Caledonia), A. pavonina (Fiji), A. spongiosa (Pacific) and A. corticata (Indo-Pacific). We also propose the resurrection of A. gracillima Børgesen, the reinstatement of Avrainvillea lacerata var. robustior A.Gepp & E.S.Gepp, and the synonymy of A. rotumensis A.D.R.N’Yeurt, D.S.Littler & Littler with A. pacifica A.Gepp & E.S.Gepp. We complemented the taxonomic work by providing a contemporary dichotomous key for morphological identification of all extant species. Our multilocus phylogeny included 25 species of Dichotomosiphonaceae and recovered Avrainvillea as a polyphyletic group, divided into three distinct clades, with Cladocephalus luteofuscus positioned within the group. The species determined using the species delimitation approach were all monophyletic and 19 of them were highly supported. For the first time, this study also provided genetic sequences for A. asarifolia, A. clavatiramea, A. digitata, A. elliottii, A. fulva, A. gracillima, A. geppiorum, A. pacifica and A. obscura. HIGHLIGHTS • Avrainvillea is not monophyletic. • Reassessment of Avrainvillea species diversity delimited 23 secondary species hypotheses. • Eight new species of Avrainvillea were discovered in the Indo-Pacific.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-02-24","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"43399447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2023-02-21DOI: 10.1080/09670262.2023.2165711
C. Gueidan, Oliver L. Mead, Hadi Nazem-Bokaee, Sarah Mathews
ABSTRACT Although genome sequences of lichenized fungi are increasingly becoming available, genome sequences of microalgae involved in the lichen symbiosis are still scarce. For lichenized eukaryotic algae, genome sequencing has focused mostly on Trebouxia and Asterochloris, with little genomic data available for Stichococcus-like algae, such as Diplosphaera. The genus Diplosphaera is a common component of biological soil crusts, and often occurs associated with lichens of the family Verrucariaceae. It is characterized by cylindrical to spherical cells containing a plate-like chloroplast, and more specifically by a vegetative cell division that leads to the formation of typical two- to four-celled clusters. Here, we present a draft genome sequence for the algal partner of an Australian lichen specimen of Endocarpon pusillum. The genome was sequenced with Pac Bio long read and Illumina short read technologies, and transcriptome data were generated to inform the structural annotations. This algal strain is here identified as Diplosphaera chodatii based on nuSSU and ITS data. Compared with closely related lichenized and non-lichenized algae, the genome of D. chodatii stands out for its large size (85.6 Mb) and gene content (21,261 protein-encoding regions), as well as its high rate of duplicated genes (60% of the BUSCO genes are duplicated). These results suggest that whole genome duplication or large-scale segmental duplications may have occurred in the evolutionary history of this algal species. HIGHLIGHTS Little genome data are available for lichenized algae. We generated the first genome for a lichenized Diplosphaera chodatii. Results suggest a possible whole genome duplication in this species.
{"title":"First draft of an annotated genome for a lichenised strain of the green alga Diplosphaera chodatii (Prasiolales, Trebouxiophyceae)","authors":"C. Gueidan, Oliver L. Mead, Hadi Nazem-Bokaee, Sarah Mathews","doi":"10.1080/09670262.2023.2165711","DOIUrl":"https://doi.org/10.1080/09670262.2023.2165711","url":null,"abstract":"ABSTRACT Although genome sequences of lichenized fungi are increasingly becoming available, genome sequences of microalgae involved in the lichen symbiosis are still scarce. For lichenized eukaryotic algae, genome sequencing has focused mostly on Trebouxia and Asterochloris, with little genomic data available for Stichococcus-like algae, such as Diplosphaera. The genus Diplosphaera is a common component of biological soil crusts, and often occurs associated with lichens of the family Verrucariaceae. It is characterized by cylindrical to spherical cells containing a plate-like chloroplast, and more specifically by a vegetative cell division that leads to the formation of typical two- to four-celled clusters. Here, we present a draft genome sequence for the algal partner of an Australian lichen specimen of Endocarpon pusillum. The genome was sequenced with Pac Bio long read and Illumina short read technologies, and transcriptome data were generated to inform the structural annotations. This algal strain is here identified as Diplosphaera chodatii based on nuSSU and ITS data. Compared with closely related lichenized and non-lichenized algae, the genome of D. chodatii stands out for its large size (85.6 Mb) and gene content (21,261 protein-encoding regions), as well as its high rate of duplicated genes (60% of the BUSCO genes are duplicated). These results suggest that whole genome duplication or large-scale segmental duplications may have occurred in the evolutionary history of this algal species. HIGHLIGHTS Little genome data are available for lichenized algae. We generated the first genome for a lichenized Diplosphaera chodatii. Results suggest a possible whole genome duplication in this species.","PeriodicalId":12032,"journal":{"name":"European Journal of Phycology","volume":null,"pages":null},"PeriodicalIF":2.4,"publicationDate":"2023-02-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"44137924","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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