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Astaxanthin Induces Apoptosis in Human Osteosarcoma MG-63 Cells. 虾青素诱导人骨肉瘤 MG-63 细胞凋亡
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069050186
Guangyu Wang, Xu Tian, Lintao Liu, Jingming Dong

We explored the mechanism of human osteosarcoma MG-63 cell apoptosis induced by asta-xanthin. The MTT assay was used to detect the effect of astaxanthin on cell viability. Morphological changes associated with apoptosis were observed after DAPI staining. Early and late stages of apoptosis were detected by flow cytometry with annexin V-FITC/PI staining. Activation of caspases-8, -9 and -3 was detected by enzyme activity in vitro. Changes in the mitochondrial membrane potential were detected by MitoCapture staining. Western blot was used to detect the cleavage of PARP, which is a caspase-3 substrate, the release of cytochrome c and Smac into the cytosol, the translocation of pro-apoptotic proteins Bax and Bak, and the expression of mitochondrial pathway-related proteins. The translocation of Bax was also detected by immunofluorescence assay. Astaxanthin significantly inhibited the viability of human osteosarcoma MG-63 cells with an IC50 value of 12.36 μg/ml. The DAPI-stained cells showed characteristic apoptotic morphological changes - cell shrinkage, cell membrane blebbing, nuclear condensation, and apoptotic body formation. Cytochrome c and Smac were released from mitochondria to the cytosol. Pro-apoptotic proteins Bax and Bak were rapidly translocated to mitochondria after six hours of astaxanthin action. Caspases-9 and -3 were activated and PARP was cleaved. The expression of anti-apoptotic proteins Bcl-2, Bcl-xL and XIAP was significantly decreased. Astaxanthin induced human osteosarcoma MG-63 cell apoptosis through the mitochondria-mediated endogenous apoptosis pathway.

我们探讨了虾青素诱导人骨肉瘤MG-63细胞凋亡的机制。MTT试验用于检测虾青素对细胞活力的影响。DAPI染色后观察到与细胞凋亡相关的形态变化。用流式细胞仪和附件素 V-FITC/PI 染色法检测细胞凋亡的早期和晚期阶段。体外酶活性检测了 caspases-8、-9 和-3 的活化。线粒体膜电位的变化通过 MitoCapture 染色法检测。用 Western 印迹法检测了作为 caspase-3 底物的 PARP 的裂解、细胞色素 c 和 Smac 向细胞质的释放、促凋亡蛋白 Bax 和 Bak 的转位以及线粒体通路相关蛋白的表达。免疫荧光试验也检测到了 Bax 的转位。虾青素能明显抑制人骨肉瘤 MG-63 细胞的活力,IC50 值为 12.36 μg/ml。DAPI染色的细胞表现出特征性的凋亡形态学变化--细胞萎缩、细胞膜出血、核凝聚和凋亡体形成。细胞色素 c 和 Smac 从线粒体释放到细胞膜。在虾青素作用六小时后,促凋亡蛋白 Bax 和 Bak 被迅速转运到线粒体。Caspases-9和-3被激活,PARP被裂解。抗凋亡蛋白 Bcl-2、Bcl-xL 和 XIAP 的表达明显减少。虾青素通过线粒体介导的内源性凋亡途径诱导人骨肉瘤MG-63细胞凋亡。
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引用次数: 0
Many Ways to the Cell Cycle Exit after Inhibition of CDK4/6. CDK4/6 抑制后细胞周期退出的多种途径
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069050194
Libor Macůrek

Cyclin-dependent kinases (CDKs) are master regulators of proliferation, and therefore they represent attractive targets for cancer therapy. Deve-lopment of selective CDK4/6 inhibitors including palbociclib revolutionized the treatment of advanced HR+/HER2- breast cancer. Inhibition of CDK4/6 leads to cell cycle arrest in G0/G1 phase and eventually to a permanent cell cycle exit called senescence. One of the main features of the senescence is an increased cell size. For many years, it was believed that the non-dividing cells simply continue to grow and as a result, they become excessively large. There is now emerging evidence that the increased cell size is a cause rather than consequence of the cell cycle arrest. This review aims to summarize recent advances in our understanding of senescence induction, in particular that resulting from treatment with CDK4/6 inhibitors.

细胞周期蛋白依赖性激酶(CDKs)是增殖的主要调节因子,因此是癌症治疗的诱人靶点。包括帕博西尼(palbociclib)在内的选择性CDK4/6抑制剂的开发彻底改变了晚期HR+/HER2-乳腺癌的治疗。CDK4/6抑制剂会导致细胞周期停滞在G0/G1期,最终导致细胞周期永久退出,即衰老。衰老的主要特征之一是细胞体积增大。多年来,人们一直认为不分裂的细胞只是继续生长,结果变得过大。现在有证据表明,细胞体积增大是细胞周期停滞的原因而非结果。这篇综述旨在总结我们对衰老诱导的最新理解进展,特别是CDK4/6抑制剂治疗导致的衰老诱导。
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引用次数: 0
Germline Pathogenic Variants in Squamous Cell Carcinoma of the Head and Neck. 头颈部鳞状细胞癌的基因致病变异
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069040107
Tereza Drbohlavová, Soňa Argalácsová, Jana Soukupová, Michal Vočka

Head and neck squamous cell carcinoma (HNSCC) presents a significant global health problem with variable geographic distribution and risk factors, including tobacco and alcohol abuse, human papillomavirus infections, and genetic predisposition. While the majority of cases are sporadic, several well-defined hereditary syndromes have been associated with a higher risk of developing HNSCC including Li-Fraumeni syndrome, Fanconi anaemia, Bloom syndrome, familial atypical multiple mole melanoma, and dyskeratosis congenita. There is also evidence of familial clusters of HNSCC, suggesting a genetic component in the development of the disease. Germ-line genetic testing in HNSCC using next-generation sequencing has revealed a wide range of germline variants, some of which were not anticipated based on standard guidelines. These variants may influence treatment decisions and have the potential to be targeted with precision medicine in the future. Despite these advances, routine germline genetic testing for HNSCC is not currently recommended and remains reserved for HNSCC cases with early onset or strong family cancer history. However, the increasing availability of germline genetic testing warrants development of more comprehensive and standardized testing protocols. Germline genetic testing also has the potential to influence precision-guided treatment in HNSCC patients carrying germline pathogenic variants.

头颈部鳞状细胞癌(HNSCC)是一个严重的全球性健康问题,其地理分布和风险因素各不相同,包括吸烟和酗酒、人类乳头瘤病毒感染和遗传易感性。虽然大多数病例都是散发性的,但有几种明确的遗传综合征与罹患 HNSCC 的风险较高有关,其中包括李-弗劳米尼综合征、范可尼贫血症、布鲁姆综合征、家族性非典型多痣黑色素瘤和先天性角化不良。也有证据表明 HNSCC 存在家族聚集现象,这表明该疾病的发生与遗传因素有关。使用下一代测序技术对 HNSCC 进行种系基因检测,发现了多种种系变异,其中一些变异是标准指南未曾预料到的。这些变异可能会影响治疗决策,并有可能在未来成为精准医疗的目标。尽管取得了这些进展,但目前并不推荐对 HNSCC 进行常规种系基因检测,而且仍然只针对早期发病或有强烈家族癌症史的 HNSCC 病例。然而,随着种系基因检测的日益普及,有必要制定更全面、更标准化的检测方案。种系基因检测还有可能对携带种系致病变异的 HNSCC 患者的精准指导治疗产生影响。
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引用次数: 0
Autotaxin and Lysophosphatidic Acid Signalling: the Pleiotropic Regulatory Network in Cancer. Autotaxin 和溶血磷脂酸信号:癌症中的多向调控网络
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069050149
Ondřej Vít, Jiří Petrák

Autotaxin, also known as ecto-nucleotide pyrophosphatase/phosphodiesterase family member 2, is a secreted glycoprotein that plays multiple roles in human physiology and cancer pathology. This protein, by converting lysophosphatidylcholine into lysophosphatidic acid, initiates a complex signalling cascade with significant biological implications. The article outlines the autotaxin gene and protein structure, expression regulation and physiological functions, but focuses mainly on the role of autotaxin in cancer development and progression. Autotaxin and lysophosphatidic acid signalling influence several aspects of cancer, including cell proliferation, migration, metastasis, therapy resistance, and interactions with the immune system. The potential of autotaxin as a diagnostic biomarker and promising drug target is also examined.

Autotaxin 又称外核苷酸焦磷酸酶/磷酸二酯酶家族成员 2,是一种分泌型糖蛋白,在人体生理和癌症病理中发挥着多种作用。该蛋白通过将溶血磷脂酰胆碱转化为溶血磷脂酸,启动了一个具有重要生物学意义的复杂信号级联。文章概述了自体表皮生长因子基因和蛋白质的结构、表达调控和生理功能,但主要侧重于自体表皮生长因子在癌症发生和发展中的作用。自体表皮生长因子和溶血磷脂酸信号影响癌症的多个方面,包括细胞增殖、迁移、转移、抗药性以及与免疫系统的相互作用。研究还探讨了自体表皮生长因子作为诊断生物标志物和有前途的药物靶点的潜力。
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引用次数: 0
Homeobox Protein PROX1 Expression is Negatively Regulated by Histone Deacetylase 1 and c-JUN Complex in MDA-MB-231 Human Breast Cancer Cells. 组蛋白去乙酰化酶 1 和 c-JUN 复合物对 MDA-MB-231 人乳腺癌细胞中同源框蛋白 PROX1 的表达具有负调控作用。
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069030081
Munki Jeong, Euitaek Jung, Sukjin Oh, Soon Young Shin

Prospero homeobox 1 (PROX1) is a member of the homeobox transcription factor family that plays a critical role in the development of multiple tissues and specification of cell fate. PROX1 expression is differentially regulated based on the cellular context and plays an antagonistic role as a tumour promoter or suppressor in different tumour types. In human breast cancer, PROX1 expression is suppress-ed; however, the molecular mechanism by which it is down-regulated remains poorly understood. Here, we show that ectopic expression of PROX1 reduces the motility and invasiveness of MDA-MB-231 human breast cancer cells, suggesting that PROX1 functions as a negative regulator of tumour invasion in MDA-MB-231 cells. Treatment with histone deacetylase (HDAC) inhibitors up-regulates PROX1 mRNA and protein expression levels. Knockdown of HDAC1 using short hairpin RNA also up-regulates PROX1 mRNA and protein expression levels. We found that HDAC1 interacted with c-JUN at the activator protein (AP)-1-binding site located at -734 to -710 in the PROX1 promoter region to suppress PROX1 expression. In addition, c-JUN N-terminal kinase-mediated c-JUN phosphorylation was found to be crucial for silencing PROX1 expression. In conclusion, PROX1 expression can be silenced by the epigenetic mechanism involved in the complex formation of HDAC1 and c-JUN at the AP-1 site in the PROX1 promoter region in MDA-MB-231 human breast cancer cells. Therefore, this study revealed the epigenetic regulatory mechanism involved in the suppression of PROX1 expression in breast cancer cells.

Prospero homeobox 1(PROX1)是homeobox转录因子家族的成员,在多种组织的发育和细胞命运的规范中发挥着关键作用。PROX1 的表达受细胞环境的不同调控,在不同类型的肿瘤中扮演着肿瘤启动子或抑制因子的拮抗角色。在人类乳腺癌中,PROX1 的表达受到抑制;然而,人们对其下调的分子机制仍然知之甚少。在这里,我们发现异位表达 PROX1 会降低 MDA-MB-231 人乳腺癌细胞的运动性和侵袭性,这表明 PROX1 在 MDA-MB-231 细胞中发挥着肿瘤侵袭负调控因子的作用。组蛋白去乙酰化酶(HDAC)抑制剂能上调 PROX1 mRNA 和蛋白质的表达水平。使用短发夹RNA敲除HDAC1也能上调PROX1 mRNA和蛋白表达水平。我们发现,HDAC1与c-JUN在位于PROX1启动子区-734至-710处的激活蛋白(AP)-1结合位点相互作用,抑制了PROX1的表达。此外,研究还发现 c-JUN N 端激酶介导的 c-JUN 磷酸化是抑制 PROX1 表达的关键。总之,在 MDA-MB-231 人乳腺癌细胞中,PROX1 启动子区 AP-1 位点上的 HDAC1 和 c-JUN 形成的复合物可通过表观遗传学机制抑制 PROX1 的表达。因此,本研究揭示了抑制乳腺癌细胞中 PROX1 表达的表观遗传调控机制。
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引用次数: 0
Radiation-Induced Lymphopoenia and Treatment Outcome in Hereditary Breast Cancer Patients. 遗传性乳腺癌患者的放射诱导淋巴细胞减少症与治疗结果
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069030091
Soňa Argalácsová, Ľudmila Křížová, Martin Matějů, Dominika Svobodová, Michal Vočka

Many breast cancer (BC) predisposition genes encode proteins involved in DNA damage repair (DDR). Identification of germline pathogenic va-riants (PV) in DDR genes raises the question whether their presence can influence the treatment outcomes and potential radiation-induced toxicity in their carriers treated by adjuvant radiotherapy, which has not yet been answered conclusively. We retrospectively examined records of 213 BC patients treated by adjuvant radiotherapy, including 39 (18.3 %) BRCA1/2 PV carriers, 25 carriers (11.7 %) of PV in other breast cancer-predisposing genes, and 149 (70 %) non-carriers. Our goal was to examine 5-year disease-free survival (5y DFS) rates among the study groups and determine the impact of radiotherapy-induced lymphopoenia (RIL) on this outcome. While we found no significant difference in 5y DFS between non-carriers and carriers of BRCA mutations (86.4 % vs 78.4 % P = 0.24) or between non-carriers and other studied mutations (86.4 % vs 93.3 %; P = 0.27), respectively, we observed that the entire group of PV carriers had a significantly lower proportion of patients without RIL (P = 0.04) than the non-carriers. In contrast, subsequent analyses indicated a non-significant trend toward an increased 5y DFS in PV carriers with RIL. Our single-centre study indicated that the presence of PV in BC patients has an insignificant impact on DFS but can reduce the risk of RIL associated with adjuvant radiotherapy. It remains unclear whether this may result from the paradoxical activation of anti-tumour immunity in PV carriers with higher lymphocyte consumption resulting from higher immune effectiveness.

许多乳腺癌(BC)易感基因编码参与 DNA 损伤修复(DDR)的蛋白质。DDR基因中致病性种系基因(PV)的发现提出了一个问题:PV的存在是否会影响接受辅助放疗的PV携带者的治疗效果和潜在的放疗毒性?我们回顾性研究了接受辅助放疗的 213 例 BC 患者的记录,其中包括 39 例(18.3%)BRCA1/2 PV 携带者、25 例(11.7%)其他乳腺癌易感基因 PV 携带者和 149 例(70%)非携带者。我们的目标是检查各研究组的 5 年无病生存率(DFS),并确定放疗诱导淋巴细胞减少症(RIL)对这一结果的影响。虽然我们发现非 BRCA 基因突变携带者与 BRCA 基因突变携带者(86.4% vs 78.4% P = 0.24)或非 BRCA 基因突变携带者与其他研究基因突变携带者(86.4% vs 93.3%; P = 0.27)之间的 5 年无病生存率无明显差异,但我们观察到整个 PV 携带者群体中无 RIL 的患者比例明显低于非携带者(P = 0.04)。相比之下,随后的分析表明,有 RIL 的 PV 携带者的 5y DFS 有增加的趋势,但不显著。我们的单中心研究表明,BC 癌症患者体内存在 PV 对 DFS 影响不大,但可降低辅助放疗相关的 RIL 风险。目前还不清楚这是否可能是由于PV携带者体内的抗肿瘤免疫功能被激活,免疫效力提高导致淋巴细胞消耗增加。
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引用次数: 0
Study of the Methylation of Bovine GSTP1 Gene under the Influence of Pesticide Mospilan 20SP Alone and in Combination with Pesticide Orius 25EW. 农药Mospilan 20SP单独及与农药Orius 25EW联合作用下牛GSTP1基因甲基化的研究
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069010006
Jana Halušková, Beáta Holečková, Lenka Luptáková, Ján Košuth, Viera Schwarzbacherová, Martina Galdíková, Simona Koleničová

DNA methylation, one of the most studied epigenetic mechanisms, when present in the promoter region of genes, causes inhibition of gene expression, and conversely, hypomethylation of these regions enables gene expression. DNA methylation is susceptible to nutritional and environmental influences, and undesirable alterations in methylation patterns manifested in changes in the expression of relevant genes can lead to pathological consequences. In the present work, we studied the methylation status of the bovine GSTP1 gene under the influence of pesticide Mospilan 20SP alone and in combination with pesticide Orius 25EW in in vitro proliferating bovine lymphocytes. We employed methylation-specific PCR, and when studying the effect of pesticide combinations, we also used its real-time version followed by a melting procedure. Our results showed that Mospilan 20SP alone at 5, 25, 50, and 100 µg.ml-1 and 5, 10, 25, and 50 µg.ml-1 for the last 4 and 24 hours of culture with in vitro proliferating bovine lymphocytes, respectively, did not induce methylation of the bovine GSTP1 gene. The same results were revealed when studying the effect of the combination of the pesticides added to the lymphocyte cultures for the last 24 hours of cultivation in the following amounts: 1.25, 2.5, 5, 10, and 25 µg.ml-1 of Mospilan 20SP and 1.5, 3, 6, 15, and 30 µg.ml-1 of Orius 25EW. We have also revealed that the less laborious real-time MSP followed by a melting procedure may replace MSP for studying the methylation status of the GSTP1 gene.

DNA甲基化是研究最多的表观遗传机制之一,当存在于基因的启动子区域时,会导致基因表达的抑制,相反,这些区域的低甲基化使基因表达。DNA甲基化易受营养和环境影响,甲基化模式的不良改变表现为相关基因表达的变化,可导致病理后果。在本研究中,我们研究了农药Mospilan 20SP单独和与农药Orius 25EW联合作用下牛GSTP1基因在体外增殖的牛淋巴细胞中的甲基化状态。我们采用了甲基化特异性PCR,在研究农药组合的影响时,我们也使用了实时版本,然后进行了融化程序。我们的结果表明,在5、25、50和100µg时,单独使用Mospilan 20SP。Ml-1和5、10、25和50µg。ml-1分别与体外增殖的牛淋巴细胞培养的最后4和24小时,没有诱导牛GSTP1基因的甲基化。在淋巴细胞培养的最后24小时中,分别添加1.25、2.5、5、10和25µg的农药,对淋巴细胞的影响也得到了同样的结果。Mospilan 20SP的ml-1和1.5、3、6、15、30µg。Orius 25EW的ml-1。我们还发现,不那么费力的实时MSP随后的熔化过程可能取代MSP来研究GSTP1基因的甲基化状态。
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引用次数: 0
A Pilot Study on the Uptake of Propidium Iodide and YO-PRO-1 Iodide through the Pannexin Channels in Wallachian Frozen-Thawed Ram Spermatozoa. 关于瓦拉几亚冷冻解冻公羊精子通过 Pannexin 通道摄取碘化丙啶和 YO-PRO-1 碘化物的试验性研究
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069040127
Filipp Georgijevič Savvulidi, Martin Ptáček, Anežka Málková, Elena Golovina, Jan Pytlík, Martina Janošíková, Szabolcs Nagy, Joăo Pedro Barbas, Luděk Stádník, Karina Savvulidi Vargová

Propidium iodide (PI) and YO-PRO-1 (YPI) dyes are routinely used to determine sperm viability in many livestock species. It is commonly accepted that these dyes penetrate only sperm cells with damaged plasma membranes. Recently, however, the mechanism of dye uptake unrelated to damaged plasma membranes, but instead related to pannexin channels in dog and stallion sperm cells was demonstrated. This pilot study aimed to evaluate the role of pannexins in the uptake of PI and YPI dyes on Wallachian frozen-thawed ram spermatozoa by flow cytometry using probenecid, a specific inhibitor of pannexin channels. Additionally, the expression of pannexins in Wallachian sperm was evaluated directly (by qRT-PCR). The results demonstrate the active role of pannexin channels in the uptake of PI and YPI dyes on frozen-thawed Wallachian ram sperm. In conclusion, when using the PI or YPI exclusion assay to determine Wallachian frozen-thawed ram sperm viability, the danger of overestimating the number of spermatozoa with the damaged plasma membrane must be considered. The observed breed-specific, and more importantly, individual differences in gene expression as well as in dye uptake indicate the need for further studies.

碘化丙啶(PI)和 YO-PRO-1 (YPI)染料通常用于测定许多家畜物种的精子活力。一般认为,这些染料只能穿透质膜受损的精子细胞。然而,最近在狗和种马的精子细胞中发现,染料的吸收机制与受损的质膜无关,而是与pannexin通道有关。本试验研究旨在通过流式细胞术,使用泛奈素通道的特异性抑制剂丙磺舒,评估泛奈素在瓦拉几亚冷冻解冻公羊精子摄取 PI 和 YPI 染料中的作用。此外,还直接(通过 qRT-PCR)评估了泛联蛋白在瓦拉几亚精子中的表达。结果表明,在冷冻解冻的瓦拉几亚公羊精子吸收 PI 和 YPI 染料的过程中,泛联素通道发挥了积极作用。总之,在使用 PI 或 YPI 排除法测定瓦拉几亚冷冻解冻公羊精子的存活率时,必须考虑到高估质膜受损精子数量的危险。在基因表达和染料吸收方面观察到的品种特异性,更重要的是个体差异表明需要进一步研究。
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引用次数: 0
Delivery-Associated Changes in the Levels of Inflammatory Molecules in Newborns. 新生儿炎症分子水平与分娩相关的变化
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069010001
Marek Mojžíšek, Michaela Šibíková, Martin Pánek, Petr Janec, Martin Haluzík, Jan Živný, Jan Janota

Inflammation is considered a fundamental process accompanying physiological human birth, also playing a role in perinatal pathologies. The goal of the study was to assess the concentrations of inflammatory molecules with respect to the mode of delivery and dynamics of inflammatory molecules in neonatal samples in the first 48-72 hours of life. The concentrations of inflammatory cytokines were measured using the Luminex®xMAP multi-analyte profiling platform in cord blood and peripheral neonatal blood. Study groups included newborns delivered spontaneously (spontaneous group) and via elective caesarean section (elective group). Cord blood concentrations of interleukin 6 (IL-6) and procalcitonin were significantly higher (P < 0.0001) in the spontaneous group compared to the elective group. Neonatal blood concentrations of tumour necrosis factor (TNF) from the elective group were significantly higher com-pared to the spontaneous group (P = 0.0077). The concentrations of procalcitonin and TNF significantly increased within the first 48 to 72 hours following either mode of delivery. IL-6 and IL-18 were significantly higher in neonatal compared to umbilical cord blood in the elective group only, while the increase in the spontaneous group did not reach statistical significance. The concentrations of IL-1α, IL-1β, IL-17A and IL-22 did not show significant differen-ces between the spontaneous and elective groups as well as between umbilical cord and neonatal blood. Our findings show physiological differences in the levels of inflammatory molecules following spontaneous vaginal delivery and elective caesarean section. The results can be used as baseline values for the research of various pathologies in newborns.

炎症被认为是伴随人类生理出生的一个基本过程,也在围产期病理中发挥作用。该研究的目的是评估在出生后48-72小时内,新生儿样本中炎症分子的浓度与分娩方式和炎症分子的动态有关。使用Luminex®xMAP多分析物分析平台测量脐带血和外周血中的炎症细胞因子浓度。研究组包括自然分娩的新生儿(自发组)和择期剖宫产(择期组)。脐带血白细胞介素6 (IL-6)和降钙素原浓度显著升高(P <0.0001),自发性组与选择性组比较。择期组新生儿血液肿瘤坏死因子(TNF)浓度显著高于自发性组(P = 0.0077)。降钙素原和TNF的浓度在分娩后48 - 72小时内显著升高。新生儿IL-6、IL-18在单纯择期组明显高于脐带血,而自发性组升高无统计学意义。IL-1α、IL-1β、IL-17A和IL-22的浓度在自发性组和择期组之间以及脐血和新生儿血之间均无显著差异。我们的研究结果显示,自然阴道分娩和选择性剖宫产后炎症分子水平的生理差异。该结果可作为新生儿各种病理研究的基线值。
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引用次数: 0
De novo Transcriptome Analysis and Gene Expression Profiling of Corylus Species. 新的 Corylus 树种转录组分析和基因表达谱分析。
IF 0.6 4区 医学 Q3 BIOLOGY Pub Date : 2023-01-01 DOI: 10.14712/fb2023069030099
Salih Ulu, Zehra Omeroglu Ulu, Aysun Akar, Nehir Ozdemir Ozgenturk

Hazelnut (Corylus), which has high commercial and nutritional benefits, is an important tree for producing nuts and nut oil consumed as ingredient especially in chocolate. While Corylus avellana L. (Euro-pean hazelnut, Betulaceae) and Corylus colurna L. (Turkish hazelnut, Betulaceae) are the two common hazelnut species in Europe, C. avellana L. (Tombul hazelnut) is grown as the most widespread hazelnut species in Turkey, and C. colurna L., which is the most important genetic resource for hazelnut breeding, exists naturally in Anatolia. We generated the transcriptome data of these two Corylus species and used these data for gene discovery and gene expression profiling. Total RNA from young leaves, flowers (male and female), buds, and husk shoots of C. avellana and C. colurna were used for two different libraries and were sequenced using Illumina HiSeq4000 with 100 bp paired-end reads. The transcriptome data 10.48 and 10.30 Gb of C. avellana and C. colurna, respectively, were assembled into 70,265 and 88,343 unigenes, respectively. These unigenes were functionally annotated using the TRAPID platform. We identified 25,312 and 27,051 simple sequen-ce repeats (SSRs) for C. avellana and C. colurna, respectively. TL1, GMPM1, N, 2MMP, At1g29670, CHIB1 unigenes were selected for validation with qPCR. The first de novo transcriptome data of C. co-lurna were used to compare data of C. avellana of commercial importance. These data constitute a valuable extension of the publicly available transcriptomic resource aimed at breeding, medicinal, and industrial research studies.

榛子(Corylus)具有很高的商业价值和营养价值,是生产坚果和坚果油的重要树种,特别是在巧克力中用作配料。Corylus avellana L.(欧洲榛子,桦木科)和 Corylus colurna L.(土耳其榛子,桦木科)是欧洲常见的两个榛子品种,C. avellana L.(通布图榛子)是土耳其种植最广泛的榛子品种,而 C. colurna L.是榛子育种最重要的遗传资源,天然存在于安纳托利亚。我们生成了这两种榛子的转录组数据,并利用这些数据进行了基因发现和基因表达谱分析。来自 C. avellana 和 C. colurna 的嫩叶、花(雄花和雌花)、花蕾和果壳嫩枝的总 RNA 被用于两个不同的文库,并使用 Illumina HiSeq4000 进行了 100 bp 成对端读数测序。C. avellana 和 C. colurna 的转录组数据分别为 10.48 和 10.30 Gb,并分别组装成 70,265 和 88,343 个单基因。使用 TRAPID 平台对这些单基因进行了功能注释。我们分别为 C. avellana 和 C. colurna 鉴定了 25,312 和 27,051 个简单序列重复(SSR)。我们选择了 TL1、GMPM1、N、2MMP、At1g29670 和 CHIB1 单基因进行 qPCR 验证。第一份 C. co-lurna 的全新转录组数据被用来比较具有重要商业价值的 C. avellana 的数据。这些数据为育种、药用和工业研究提供了宝贵的公开转录组资源。
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Folia Biologica
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