首页 > 最新文献

General physiology and biophysics最新文献

英文 中文
Co-expression and interaction network analysis identifies neutrophil-related genes as the core mediator of atrial fibrillation. 共表达和相互作用网络分析确定中性粒细胞相关基因是心房颤动的核心介质。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 DOI: 10.4149/gpb_2024004
Shaolan Liang, Xiaoxue Zhang, Jia Chen, Yongcong He, Jun Lai

Atrial fibrillation (AF) is the most common cardiac arrhythmia and can cause serious complications. Several studies have shown that neutrophils may influence AF progression. However, the key genes related to neutrophils in AF have not been fully elucidated. Here, we downloaded microarray expression data of AF, and screened differentially expressed genes. Key immune cells in AF were identified by immune cell infiltration analysis. Weighted gene co-expression network analysis (WGCNA) and protein-protein interaction (PPI) analysis were used to construct gene co-expression modules and identify hub genes. The association between key genes and neutrophils was then verified. Our results showed that 303 differentially expressed genes (DEGs) were screened in AF and sinus rhythm (SR), of which 194 were up-regulated and 109 were down-regulated. DEGs were mainly enriched in functions and pathways of neutrophil activation and biological functions of neutrophil activation-mediated immune response. Immune infiltration analysis revealed elevated levels of neutrophil infiltration in AF. WGCNA analysis revealed that the modules in dark red were associated with neutrophils. PPI analysis of these modules yielded 10 hub genes. S100A12, FCGR3B and S100A8 are 3 potential key genes related to neutrophils in AF, which are significantly positively correlated with neutrophils. These genes deserve further investigation and may be potential therapeutic targets for AF.

心房颤动(房颤)是最常见的心律失常,可引起严重的并发症。多项研究表明,中性粒细胞可能会影响心房颤动的进展。然而,房颤中与中性粒细胞相关的关键基因尚未完全阐明。在此,我们下载了心房颤动的芯片表达数据,并筛选了差异表达基因。通过免疫细胞浸润分析确定了房颤中的关键免疫细胞。利用加权基因共表达网络分析(WGCNA)和蛋白-蛋白相互作用分析(PPI)构建基因共表达模块并识别枢纽基因。然后验证了关键基因与中性粒细胞之间的关联。结果显示,在房颤和窦性心律(SR)中筛选出了 303 个差异表达基因(DEGs),其中 194 个上调,109 个下调。DEGs主要富集于中性粒细胞活化的功能和通路以及中性粒细胞活化介导的免疫反应的生物学功能。免疫浸润分析显示,房颤患者的中性粒细胞浸润水平升高。WGCNA 分析显示,暗红色的模块与中性粒细胞有关。对这些模块的 PPI 分析得出了 10 个中心基因。S100A12、FCGR3B 和 S100A8 是心房颤动中与中性粒细胞相关的 3 个潜在关键基因,它们与中性粒细胞呈显著正相关。这些基因值得进一步研究,并可能成为心房颤动的潜在治疗靶点。
{"title":"Co-expression and interaction network analysis identifies neutrophil-related genes as the core mediator of atrial fibrillation.","authors":"Shaolan Liang, Xiaoxue Zhang, Jia Chen, Yongcong He, Jun Lai","doi":"10.4149/gpb_2024004","DOIUrl":"https://doi.org/10.4149/gpb_2024004","url":null,"abstract":"<p><p>Atrial fibrillation (AF) is the most common cardiac arrhythmia and can cause serious complications. Several studies have shown that neutrophils may influence AF progression. However, the key genes related to neutrophils in AF have not been fully elucidated. Here, we downloaded microarray expression data of AF, and screened differentially expressed genes. Key immune cells in AF were identified by immune cell infiltration analysis. Weighted gene co-expression network analysis (WGCNA) and protein-protein interaction (PPI) analysis were used to construct gene co-expression modules and identify hub genes. The association between key genes and neutrophils was then verified. Our results showed that 303 differentially expressed genes (DEGs) were screened in AF and sinus rhythm (SR), of which 194 were up-regulated and 109 were down-regulated. DEGs were mainly enriched in functions and pathways of neutrophil activation and biological functions of neutrophil activation-mediated immune response. Immune infiltration analysis revealed elevated levels of neutrophil infiltration in AF. WGCNA analysis revealed that the modules in dark red were associated with neutrophils. PPI analysis of these modules yielded 10 hub genes. S100A12, FCGR3B and S100A8 are 3 potential key genes related to neutrophils in AF, which are significantly positively correlated with neutrophils. These genes deserve further investigation and may be potential therapeutic targets for AF.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141075030","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Quercetin decreases fructose drinking in model of fructose-induced insulin resistance. Unexpected uric acid and TBARS lowering effect of methyl cellulose vehicle and fructose combination. 槲皮素能降低果糖诱导的胰岛素抵抗模型中的果糖饮用量甲基纤维素载体和果糖组合具有意想不到的降低尿酸和 TBARS 的效果。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 DOI: 10.4149/gpb_2024003
Goran Koricanac, Jana Hricoviniova, Snjezana Romic, Viktoria Dobrocsyova, Mojca Stojiljkovic, Katarina Krskova, Tamara Ivkovic, Stefan Zorad

The aim of this study was to improve insulin sensitivity in fructose-treated animals by ingestion of flavonoid quercetin. Several signs of insulin resistance have been developed in rats by drinking 10% fructose solution for 9 weeks. The effect of 6-week-gavage-administrated quercetin (20 mg/kg/day in 1% methyl cellulose solution) was monitored. Rats of the control groups received methyl cellulose vehicle as well. The most striking result of the quercetin treatment was the normalization of the fructose solution drinking to the level of drinking water intake. In addition, quercetin supplementation considerably decreased the plasma glucose and Homeostatic Model Assessment for Insulin Resistance (HOMA-IR) index in rats consuming fructose. Surprisingly, fructose ingestion did not elevate plasma uric acid, thiobarbituric acid reactive substances, nitrotyrosine, or advanced glycation end products fluorescence. Instead, a reduction of the above parameters was observed. In summary, these results indicate that quercetin supplementation reduces fructose drinking and decreases plasma glucose and the HOMA-IR index. Furthermore, methyl cellulose, in combination with fructose, causes uric acid - lowering, antioxidant and anti-glycation effects. Thus, methyl cellulose possibly shifts fructose metabolism in favor of the utilization of antioxidant features of fructose. Our results call for using methyl cellulose in sweetened beverages and other sweetened food.

本研究的目的是通过摄入黄酮类化合物槲皮素来改善果糖处理动物的胰岛素敏感性。饮用10%果糖溶液9周的大鼠出现了多种胰岛素抵抗症状。研究人员对灌胃 6 周的槲皮素(20 毫克/千克/天,1%甲基纤维素溶液)的效果进行了监测。对照组大鼠也接受了甲基纤维素载体。槲皮素处理最显著的结果是,果糖溶液的饮用量与饮用水的摄入量持平。此外,补充槲皮素还大大降低了摄入果糖的大鼠的血浆葡萄糖和胰岛素抵抗自稳态模型评估(HOMA-IR)指数。令人惊讶的是,摄入果糖并不会升高血浆尿酸、硫代巴比妥酸活性物质、硝基酪氨酸或高级糖化终产物荧光。相反,上述参数都有所降低。总之,这些结果表明,补充槲皮素可减少果糖摄入量,降低血糖和 HOMA-IR 指数。此外,甲基纤维素与果糖结合还具有降低尿酸、抗氧化和抗糖化的作用。因此,甲基纤维素可能会改变果糖代谢,有利于利用果糖的抗氧化功能。我们的研究结果呼吁在甜味饮料和其他甜味食品中使用甲基纤维素。
{"title":"Quercetin decreases fructose drinking in model of fructose-induced insulin resistance. Unexpected uric acid and TBARS lowering effect of methyl cellulose vehicle and fructose combination.","authors":"Goran Koricanac, Jana Hricoviniova, Snjezana Romic, Viktoria Dobrocsyova, Mojca Stojiljkovic, Katarina Krskova, Tamara Ivkovic, Stefan Zorad","doi":"10.4149/gpb_2024003","DOIUrl":"https://doi.org/10.4149/gpb_2024003","url":null,"abstract":"<p><p>The aim of this study was to improve insulin sensitivity in fructose-treated animals by ingestion of flavonoid quercetin. Several signs of insulin resistance have been developed in rats by drinking 10% fructose solution for 9 weeks. The effect of 6-week-gavage-administrated quercetin (20 mg/kg/day in 1% methyl cellulose solution) was monitored. Rats of the control groups received methyl cellulose vehicle as well. The most striking result of the quercetin treatment was the normalization of the fructose solution drinking to the level of drinking water intake. In addition, quercetin supplementation considerably decreased the plasma glucose and Homeostatic Model Assessment for Insulin Resistance (HOMA-IR) index in rats consuming fructose. Surprisingly, fructose ingestion did not elevate plasma uric acid, thiobarbituric acid reactive substances, nitrotyrosine, or advanced glycation end products fluorescence. Instead, a reduction of the above parameters was observed. In summary, these results indicate that quercetin supplementation reduces fructose drinking and decreases plasma glucose and the HOMA-IR index. Furthermore, methyl cellulose, in combination with fructose, causes uric acid - lowering, antioxidant and anti-glycation effects. Thus, methyl cellulose possibly shifts fructose metabolism in favor of the utilization of antioxidant features of fructose. Our results call for using methyl cellulose in sweetened beverages and other sweetened food.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141075046","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Putative identification of proopiomelanocortin and neuropeptide-Y neurons of the arcuate nucleus by their response to leptin: in vivo electrophysiology study in male and female rats. 通过弓状核神经元对瘦素的反应推测识别前绒毛膜促皮质素和神经肽-Y神经元:雌雄大鼠体内电生理学研究。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 Epub Date: 2024-02-22 DOI: 10.4149/gpb_2024002
Daniil Grinchii, Viera Kominkova, Eliyahu Dremencov

The arcuate nucleus (ARN) of the hypothalamus is involved in multiple biological functions, such as feeding, sexual activity, and the regulation of the cardiovascular system. It was reported that leptin increased c-Fos expression in the proopiomelanocortin (POMC)- and decreased it in the neuropeptide-Y (NPY)-positive neurons of the ARN, suggesting that it stimulates the former, and inhibits the later. This study aimed at the direct electrophysiological examination of the effect of leptin on ARN neurons and to investigate potential sex-dimorphic changes. Wistar rats were anesthetized with urethane and the electrodes were inserted into the ARN. After a spontaneous active neuron was recorded for at least one minute, leptin was administered intravenously, and the firing activity of the same neuron was recorded for two additional minutes. It was found that approximately half of the ARN neurons had an excitatory, and another half an inhibitory response to the leptin administration. The excitability of the neurons with excitatory response to leptin was not different between the sexes. The average firing rate of the neurons with inhibitory response to leptin in females was, however, significantly lower comparing to the males. The obtained results demonstrate that the ARN neurons with stimulatory response to leptin are POMC and those with inhibitory response are NPY neurons. NPY Y1 receptor be might responsible, at least in part, for the sex differences in the excitability of the neurons putatively identified as NPY neurons.

下丘脑弓状核(ARN)参与多种生物功能,如进食、性活动和心血管系统的调节。有报道称,瘦素可增加下丘脑弓状核(ARN)中促髓鞘皮质素(POMC)神经元的c-Fos表达,而降低神经肽-Y(NPY)阳性神经元的c-Fos表达,表明瘦素可刺激前者,抑制后者。本研究旨在直接电生理检测瘦素对ARN神经元的影响,并研究潜在的性别二态性变化。用尿烷麻醉 Wistar 大鼠,将电极插入 ARN。在记录一个自发活跃神经元至少一分钟后,静脉注射瘦素,再记录同一神经元的发射活动两分钟。结果发现,大约一半的 ARN 神经元对注射瘦素有兴奋反应,另一半有抑制反应。对瘦素有兴奋反应的神经元的兴奋性在性别上没有差异。然而,女性神经元对瘦素的抑制性反应的平均发射率明显低于男性。研究结果表明,对瘦素有刺激性反应的 ARN 神经元是 POMC 神经元,而对瘦素有抑制性反应的神经元是 NPY 神经元。NPY Y1受体可能至少是造成被认为是NPY神经元的神经元兴奋性性别差异的部分原因。
{"title":"Putative identification of proopiomelanocortin and neuropeptide-Y neurons of the arcuate nucleus by their response to leptin: in vivo electrophysiology study in male and female rats.","authors":"Daniil Grinchii, Viera Kominkova, Eliyahu Dremencov","doi":"10.4149/gpb_2024002","DOIUrl":"10.4149/gpb_2024002","url":null,"abstract":"<p><p>The arcuate nucleus (ARN) of the hypothalamus is involved in multiple biological functions, such as feeding, sexual activity, and the regulation of the cardiovascular system. It was reported that leptin increased c-Fos expression in the proopiomelanocortin (POMC)- and decreased it in the neuropeptide-Y (NPY)-positive neurons of the ARN, suggesting that it stimulates the former, and inhibits the later. This study aimed at the direct electrophysiological examination of the effect of leptin on ARN neurons and to investigate potential sex-dimorphic changes. Wistar rats were anesthetized with urethane and the electrodes were inserted into the ARN. After a spontaneous active neuron was recorded for at least one minute, leptin was administered intravenously, and the firing activity of the same neuron was recorded for two additional minutes. It was found that approximately half of the ARN neurons had an excitatory, and another half an inhibitory response to the leptin administration. The excitability of the neurons with excitatory response to leptin was not different between the sexes. The average firing rate of the neurons with inhibitory response to leptin in females was, however, significantly lower comparing to the males. The obtained results demonstrate that the ARN neurons with stimulatory response to leptin are POMC and those with inhibitory response are NPY neurons. NPY Y1 receptor be might responsible, at least in part, for the sex differences in the excitability of the neurons putatively identified as NPY neurons.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139930786","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Ampelopsin facilitates diabetic wound healing and keratinocyte cell progression by inhibiting the NLRP3 inflammasome pathway in macrophages. 安泼辣素通过抑制巨噬细胞中的 NLRP3 炎性体通路,促进糖尿病伤口愈合和角质细胞进展。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 DOI: 10.4149/gpb_2023039
Qiong Zhou, Geng Cheng

Ampelopsin (AMP) had a wound-healing effect in rat skin wounds with or without purulent infection. However, the role of AMP in diabetic wound healing remains poorly defined. Wounds were created on the dorsal skin of type 2 diabetic mouse model, and the histological features of wounds were examined by hematoxylin and eosin (HE) staining. Caspase-1 activity and the secretion of inflammatory cytokines were detected by enzyme-linked immunosorbent assay (ELISA). Cell viability and migration were examined through cell counting kit-8 (CCK-8) and wound healing assays, respectively. AMP facilitated wound healing in vivo. AMP notably facilitated platelet endothelial cell adhesion molecule-31 (CD31), collagen type I alpha 1 chain (COL1A1), and alpha-smooth muscle actin (α-SMA), and inhibited matrix metallopeptidase 9 (MMP9) and cyclooxygenase 2 (Cox2) expression in diabetic wounds. The inflammasome pathway was implicated in skin injury. AMP inhibited pro-inflammatory factor secretions and NLR family pyrin domain containing 3 (NLRP3) inflammasome pathway in diabetic wounds and high glucose-treated THP-1 macrophages. AMP-mediated NLRP3 inflammasome inhibition in THP-1 macrophages increased cell viability and migratory capacity in HaCaT cells. AMP facilitated diabetic wound healing and increased keratinocyte cell viability and migratory ability by inhibiting the NLRP3 inflammasome pathway in macrophages.

安泼辣素(AMP)对有或没有化脓感染的大鼠皮肤伤口有愈合作用。然而,AMP 在糖尿病伤口愈合中的作用仍未明确。研究人员在 2 型糖尿病小鼠模型的背部皮肤上制造伤口,并用苏木精和伊红(HE)染色法检查伤口的组织学特征。用酶联免疫吸附试验(ELISA)检测 Caspase-1 活性和炎性细胞因子的分泌。细胞活力和迁移分别通过细胞计数试剂盒-8(CCK-8)和伤口愈合试验进行检测。AMP 可促进体内伤口愈合。在糖尿病伤口中,AMP明显促进了血小板内皮细胞粘附分子-31(CD31)、胶原蛋白I型α1链(COL1A1)和α-平滑肌肌动蛋白(α-SMA)的表达,并抑制了基质金属肽酶9(MMP9)和环氧化酶2(Cox2)的表达。炎症小体通路与皮肤损伤有关。在糖尿病伤口和高糖处理的 THP-1 巨噬细胞中,AMP 可抑制促炎因子分泌和 NLR 家族含吡咯啉结构域 3(NLRP3)炎性组通路。在 THP-1 巨噬细胞中,AMP 介导的 NLRP3 炎症体抑制提高了 HaCaT 细胞的细胞活力和迁移能力。通过抑制巨噬细胞中的 NLRP3 炎性体途径,AMP 促进了糖尿病伤口的愈合,并提高了角质细胞的活力和迁移能力。
{"title":"Ampelopsin facilitates diabetic wound healing and keratinocyte cell progression by inhibiting the NLRP3 inflammasome pathway in macrophages.","authors":"Qiong Zhou, Geng Cheng","doi":"10.4149/gpb_2023039","DOIUrl":"10.4149/gpb_2023039","url":null,"abstract":"<p><p>Ampelopsin (AMP) had a wound-healing effect in rat skin wounds with or without purulent infection. However, the role of AMP in diabetic wound healing remains poorly defined. Wounds were created on the dorsal skin of type 2 diabetic mouse model, and the histological features of wounds were examined by hematoxylin and eosin (HE) staining. Caspase-1 activity and the secretion of inflammatory cytokines were detected by enzyme-linked immunosorbent assay (ELISA). Cell viability and migration were examined through cell counting kit-8 (CCK-8) and wound healing assays, respectively. AMP facilitated wound healing in vivo. AMP notably facilitated platelet endothelial cell adhesion molecule-31 (CD31), collagen type I alpha 1 chain (COL1A1), and alpha-smooth muscle actin (α-SMA), and inhibited matrix metallopeptidase 9 (MMP9) and cyclooxygenase 2 (Cox2) expression in diabetic wounds. The inflammasome pathway was implicated in skin injury. AMP inhibited pro-inflammatory factor secretions and NLR family pyrin domain containing 3 (NLRP3) inflammasome pathway in diabetic wounds and high glucose-treated THP-1 macrophages. AMP-mediated NLRP3 inflammasome inhibition in THP-1 macrophages increased cell viability and migratory capacity in HaCaT cells. AMP facilitated diabetic wound healing and increased keratinocyte cell viability and migratory ability by inhibiting the NLRP3 inflammasome pathway in macrophages.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141074939","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
CCCTC-binding factor suppresses alpha-2-macroglobulin transcription to improve vascular endothelial cell functions in lower extremity arteriosclerosis obliterans. CCCTC结合因子可抑制α-2-巨球蛋白转录,从而改善下肢动脉硬化闭塞症的血管内皮细胞功能。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 DOI: 10.4149/gpb_2024005
Tianmin He, Mengqiang You, Huixin Zhu, Peng Chen, Shanhong Fang

Vascular endothelial cell functions affect lower extremity arteriosclerosis obliterans (LEASO), while alpha-2-macroglobulin (A2M) and CCCTC-binding factor (CTCF) are closely related to the function of such cells. This paper aims to identify the influences of CTCF on vascular endothelial cells in LEASO by regulating A2M. A rat model of LEASO was established to measure intima-media ratio, blood lipid, and inflammatory factor levels. By constructing LEASO cell models, cell viability and apoptosis were assayed, while autophagy-related proteins, CTCF and A2M levels in femoral artery tissues and HUVECs were determined. The transcriptional regulation of CTCF on A2M was verified. In LEASO rat models, femoral artery lumen was narrowed and endothelial cells were disordered; levels of total cholesterol, IL-1, and TNF-α enhanced, and HDL-C decreased, with strong expression of A2M and low expression of CTCF. The viability of ox-LDL-treated HUVECs was decreased, together with higher apoptosis, lower LC3II/I expression, and higher p62 expression, which were reversed by sh-A2M transfection. Overexpression of CTCF inhibited A2M transcription, promoted the viability and autophagy of HUVECs, and decreased apoptosis. Collectively, CTCF improves the function of vascular endothelial cells in LEASO by inhibiting A2M transcription.

血管内皮细胞的功能会影响下肢动脉硬化闭塞症(LEASO),而α-2-巨球蛋白(A2M)和四氯化碳结合因子(CTCF)与此类细胞的功能密切相关。本文旨在确定 CTCF 通过调节 A2M 对 LEASO 中血管内皮细胞的影响。通过建立大鼠 LEASO 模型,测量血管内中膜比率、血脂和炎症因子水平。通过构建LEASO细胞模型,检测了股动脉组织和HUVEC细胞中的自噬相关蛋白、CTCF和A2M水平。验证了 CTCF 对 A2M 的转录调控作用。在LEASO大鼠模型中,股动脉管腔狭窄,内皮细胞功能紊乱;总胆固醇、IL-1和TNF-α水平升高,HDL-C水平降低,A2M强表达,CTCF低表达。经 ox-LDL 处理的 HUVEC 的存活率降低,凋亡率升高,LC3II/I 表达降低,p62 表达升高。过表达 CTCF 可抑制 A2M 的转录,促进 HUVECs 的活力和自噬,减少细胞凋亡。总之,CTCF通过抑制A2M转录改善了LEASO中血管内皮细胞的功能。
{"title":"CCCTC-binding factor suppresses alpha-2-macroglobulin transcription to improve vascular endothelial cell functions in lower extremity arteriosclerosis obliterans.","authors":"Tianmin He, Mengqiang You, Huixin Zhu, Peng Chen, Shanhong Fang","doi":"10.4149/gpb_2024005","DOIUrl":"10.4149/gpb_2024005","url":null,"abstract":"<p><p>Vascular endothelial cell functions affect lower extremity arteriosclerosis obliterans (LEASO), while alpha-2-macroglobulin (A2M) and CCCTC-binding factor (CTCF) are closely related to the function of such cells. This paper aims to identify the influences of CTCF on vascular endothelial cells in LEASO by regulating A2M. A rat model of LEASO was established to measure intima-media ratio, blood lipid, and inflammatory factor levels. By constructing LEASO cell models, cell viability and apoptosis were assayed, while autophagy-related proteins, CTCF and A2M levels in femoral artery tissues and HUVECs were determined. The transcriptional regulation of CTCF on A2M was verified. In LEASO rat models, femoral artery lumen was narrowed and endothelial cells were disordered; levels of total cholesterol, IL-1, and TNF-α enhanced, and HDL-C decreased, with strong expression of A2M and low expression of CTCF. The viability of ox-LDL-treated HUVECs was decreased, together with higher apoptosis, lower LC3II/I expression, and higher p62 expression, which were reversed by sh-A2M transfection. Overexpression of CTCF inhibited A2M transcription, promoted the viability and autophagy of HUVECs, and decreased apoptosis. Collectively, CTCF improves the function of vascular endothelial cells in LEASO by inhibiting A2M transcription.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141075012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
KRAS depletion suppresses ferroptosis and affects Hippo pathway in cataract. 抑制 KRAS 可抑制白内障中的铁蛋白沉积并影响 Hippo 通路。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-05-01 DOI: 10.4149/gpb_2024009
Hongda Jiang, Yinggui Yu, Yu Yan

Cataract, a painless and progressive disorder is manifested as the opacification of the lens that represents the most significant cause of blindness worldwide. The objective of this study is to unveil the function of Kirsten rat sarcoma (KRAS) and potential action mechanisms against cataract. The ferroptosis-associated differentially expressed genes (DEGs) and pivot genes were extracted through the comprehensive bioinformatics methods. Erastin was applied for inducing ferroptosis in hydrogen peroxide (H2O2)-treated SRA01/04 cells, and validated by detecting content of intracellular iron, glutathione (GSH), malondialdehyde (MDA). Additionally, the effects of KRAS deficiency on ferroptosis were determined by functional assays. The proteins expression related to ferroptosis and Hippo pathway were determined by Western blotting. A total of 73 ferroptosis-related DEGs were discovered, and 6 critical core genes were confirmed upregulation in cataract cell model. The H2O2-treated SRA01/04 cells exhibited decrease of cell viability and proliferation, iron accumulation, MDA increase, GSH consumption, rise of COX2 and decline of GPX4, with further aggravated under erastin treatment, while the phenomena were improved by KRAS knockdown. Additionally, KRAS deficiency was involved in the Hippo signalling pathway activation. Downregulation of KRAS might restrain ferroptosis and affect Hippo pathway in cataract.

白内障是一种无痛性渐进性疾病,表现为晶状体的不透明,是全球失明的最主要原因。本研究的目的是揭示 Kirsten 大鼠肉瘤(KRAS)的功能以及对抗白内障的潜在作用机制。通过综合生物信息学方法提取了与铁突变相关的差异表达基因(DEGs)和枢轴基因。应用Erastin诱导过氧化氢(H2O2)处理的SRA01/04细胞发生铁变态反应,并通过检测细胞内铁、谷胱甘肽(GSH)和丙二醛(MDA)的含量进行验证。此外,还通过功能测定确定了 KRAS 缺乏对铁氧化的影响。通过 Western 印迹法测定了与铁突变和 Hippo 通路相关的蛋白质表达。共发现了 73 个与铁突变相关的 DEGs,其中 6 个关键核心基因在白内障细胞模型中被证实上调。H2O2处理的SRA01/04细胞表现出细胞活力和增殖下降、铁积累、MDA升高、GSH消耗、COX2升高和GPX4下降,在厄拉斯汀处理下进一步加重,而KRAS敲除则改善了这些现象。此外,KRAS的缺失还参与了Hippo信号通路的激活。下调KRAS可能会抑制白内障中的铁突变并影响Hippo通路。
{"title":"KRAS depletion suppresses ferroptosis and affects Hippo pathway in cataract.","authors":"Hongda Jiang, Yinggui Yu, Yu Yan","doi":"10.4149/gpb_2024009","DOIUrl":"10.4149/gpb_2024009","url":null,"abstract":"<p><p>Cataract, a painless and progressive disorder is manifested as the opacification of the lens that represents the most significant cause of blindness worldwide. The objective of this study is to unveil the function of Kirsten rat sarcoma (KRAS) and potential action mechanisms against cataract. The ferroptosis-associated differentially expressed genes (DEGs) and pivot genes were extracted through the comprehensive bioinformatics methods. Erastin was applied for inducing ferroptosis in hydrogen peroxide (H2O2)-treated SRA01/04 cells, and validated by detecting content of intracellular iron, glutathione (GSH), malondialdehyde (MDA). Additionally, the effects of KRAS deficiency on ferroptosis were determined by functional assays. The proteins expression related to ferroptosis and Hippo pathway were determined by Western blotting. A total of 73 ferroptosis-related DEGs were discovered, and 6 critical core genes were confirmed upregulation in cataract cell model. The H2O2-treated SRA01/04 cells exhibited decrease of cell viability and proliferation, iron accumulation, MDA increase, GSH consumption, rise of COX2 and decline of GPX4, with further aggravated under erastin treatment, while the phenomena were improved by KRAS knockdown. Additionally, KRAS deficiency was involved in the Hippo signalling pathway activation. Downregulation of KRAS might restrain ferroptosis and affect Hippo pathway in cataract.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141075022","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Trivalent anions as probes of the CFTR channel pore. 作为 CFTR 通道孔探针的三价阴离子。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-01 DOI: 10.4149/gpb_2024007
Paul Linsdell

The cystic fibrosis transmembrane conductance regulator (CFTR) Cl- channel uses positively charged amino-acid side-chains to form binding sites for permeating anions. These binding sites have been investigated experimentally using a number of anionic probes. Mutations that alter the distribution of positive and negative charges within the pore have differential effects on the binding of monovalent versus divalent anions. This study uses patch clamp recording from wild-type and pore-mutant forms of CFTR to investigate small trivalent anions (Co(NO2)63-, Co(CN)3- and IrCl63-) as potential probes of anion binding sites. These anions caused weak block of Cl- permeation in wild-type CFTR (Kd ≥ 700 μM) when applied to the intracellular side of the membrane. Mutations that increase the density of positive charge within the pore (E92Q, I344K, S1141K) increased the binding affinity of these anions 80-280-fold, and also greatly increased the voltage-dependence of block, consistent with fixed charges in the pore affecting monovalent : multivalent anion selectivity. However, high-affinity pore block by Co(NO2)63-apparently did not alter channel gating, a hallmark of high-affinity binding of divalent Pt(NO2)42- ions within the pore. This work increases the arsenal of probes available to investigate anion binding sites within Cl- channel pores.

囊性纤维化跨膜传导调节器(CFTR)Cl- 通道利用带正电荷的氨基酸侧链形成阴离子渗透的结合位点。已使用多种阴离子探针对这些结合位点进行了实验研究。改变孔内正负电荷分布的突变对一价阴离子和二价阴离子的结合有不同的影响。本研究利用野生型和孔突变型 CFTR 的膜片钳记录来研究小的三价阴离子(Co(NO2)63-、Co(CN)3- 和 IrCl63-)作为阴离子结合位点的潜在探针。当这些阴离子作用于膜的细胞内侧时,会对野生型 CFTR 的 Cl- 通透产生微弱的阻滞作用(Kd ≥ 700 μM)。增加孔内正电荷密度的突变(E92Q、I344K、S1141K)使这些阴离子的结合亲和力增加了 80-280 倍,也大大增加了阻滞的电压依赖性,这与孔内固定电荷影响单价:多价阴离子选择性是一致的。然而,Co(NO2)63 对通道的高亲和性阻断显然没有改变通道门控,而这正是二价 Pt(NO2)42- 离子在通道内高亲和性结合的特征。这项工作增加了用于研究 Cl- 通道孔内阴离子结合位点的探针种类。
{"title":"Trivalent anions as probes of the CFTR channel pore.","authors":"Paul Linsdell","doi":"10.4149/gpb_2024007","DOIUrl":"10.4149/gpb_2024007","url":null,"abstract":"<p><p>The cystic fibrosis transmembrane conductance regulator (CFTR) Cl<sup>-</sup> channel uses positively charged amino-acid side-chains to form binding sites for permeating anions. These binding sites have been investigated experimentally using a number of anionic probes. Mutations that alter the distribution of positive and negative charges within the pore have differential effects on the binding of monovalent versus divalent anions. This study uses patch clamp recording from wild-type and pore-mutant forms of CFTR to investigate small trivalent anions (Co(NO2)6<sup>3-</sup>, Co(CN)<sup>3-</sup> and IrCl6<sup>3-</sup>) as potential probes of anion binding sites. These anions caused weak block of Cl<sup>-</sup> permeation in wild-type CFTR (Kd ≥ 700 μM) when applied to the intracellular side of the membrane. Mutations that increase the density of positive charge within the pore (E92Q, I344K, S1141K) increased the binding affinity of these anions 80-280-fold, and also greatly increased the voltage-dependence of block, consistent with fixed charges in the pore affecting monovalent : multivalent anion selectivity. However, high-affinity pore block by Co(NO2)6<sup>3-</sup>apparently did not alter channel gating, a hallmark of high-affinity binding of divalent Pt(NO2)4<sup>2-</sup> ions within the pore. This work increases the arsenal of probes available to investigate anion binding sites within Cl<sup>-</sup> channel pores.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.3,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141075140","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Daidzein protects endothelial cells against high glucose-induced injury through the dual-activation of PPARα and PPARγ. 通过 PPARα 和 PPARγ 的双重激活,Daidzein 可保护内皮细胞免受高血糖诱导的损伤。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-01 DOI: 10.4149/gpb_2023041
Xuemei Yang, Xinhui Jiang, Changqing Liu, Chuang Yang, Sheng Yao, Hongmei Qiu, Junxia Yang, Ke Wu, Hong Liao, Qingsong Jiang

Endothelial damage caused by persistent glucose and lipid metabolism disorders is the main reason of diabetic vascular diseases. Daidzein exerts positive effects on vascular dysfunction. Peroxisome proliferator-activated receptors (PPARs) regulate critically glucose and lipid metabolism. However, the interaction of daidzein to PPARs is still insufficiently explored. In this study, the cell proliferation was detected by EdU. The intrinsic activity and binding affinity of daidzein for human PPARs (hPPARs) were estimated by transactivation reporter gene test and HPLC-UV method, respectively. Daidzein significantly reversed high glucose (HG, at 30 mmol/l)-induced injury in HUVECs, which was inhibited by both PPARα and PPARγ antagonist, but no PPARβ antagonist. Daidzein selectively activated hPPARα and hPPARγ1, but weakly hPPARβ. Additionally, daidzein also bound to both hPPARα and hPPARγ1. The findings suggested that daidzein may be a PPARα and PPARγ dual-agonist. The amelioration of daidzein on HUVECs from hyperglycemia may be mediated by the activation of PPARα and PPARγ receptors.

持续的糖脂代谢紊乱导致的内皮损伤是糖尿病血管疾病的主要原因。大豆异黄酮对血管功能障碍有积极作用。过氧化物酶体增殖激活受体(PPARs)对葡萄糖和脂质代谢具有重要调节作用。然而,人们对戴德辛与 PPARs 的相互作用仍缺乏足够的研究。本研究采用 EdU 检测细胞增殖。通过转录活化报告基因测试和HPLC-UV方法分别测定了大青叶苷的内在活性和与人PPARs(hPPARs)的结合亲和力。台冬酰胺能明显逆转高糖(HG,30 mmol/l)诱导的HUVECs损伤,PPARα和PPARγ拮抗剂均能抑制这种损伤,但PPARβ拮抗剂不能抑制这种损伤。Daidzein能选择性地激活hPPARα和hPPARγ1,但对hPPARβ的激活作用较弱。此外,地丁还能与 hPPARα 和 hPPARγ1 结合。研究结果表明,地丁可能是 PPARα 和 PPARγ 的双重受体激动剂。地丁对HUVECs高血糖的改善作用可能是通过激活PPARα和PPARγ受体介导的。
{"title":"Daidzein protects endothelial cells against high glucose-induced injury through the dual-activation of PPARα and PPARγ.","authors":"Xuemei Yang, Xinhui Jiang, Changqing Liu, Chuang Yang, Sheng Yao, Hongmei Qiu, Junxia Yang, Ke Wu, Hong Liao, Qingsong Jiang","doi":"10.4149/gpb_2023041","DOIUrl":"10.4149/gpb_2023041","url":null,"abstract":"<p><p>Endothelial damage caused by persistent glucose and lipid metabolism disorders is the main reason of diabetic vascular diseases. Daidzein exerts positive effects on vascular dysfunction. Peroxisome proliferator-activated receptors (PPARs) regulate critically glucose and lipid metabolism. However, the interaction of daidzein to PPARs is still insufficiently explored. In this study, the cell proliferation was detected by EdU. The intrinsic activity and binding affinity of daidzein for human PPARs (hPPARs) were estimated by transactivation reporter gene test and HPLC-UV method, respectively. Daidzein significantly reversed high glucose (HG, at 30 mmol/l)-induced injury in HUVECs, which was inhibited by both PPARα and PPARγ antagonist, but no PPARβ antagonist. Daidzein selectively activated hPPARα and hPPARγ1, but weakly hPPARβ. Additionally, daidzein also bound to both hPPARα and hPPARγ1. The findings suggested that daidzein may be a PPARα and PPARγ dual-agonist. The amelioration of daidzein on HUVECs from hyperglycemia may be mediated by the activation of PPARα and PPARγ receptors.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140109819","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
TRIM67 interacts with ENAH to regulate the apoptosis and autophagy of lung cancer cells. TRIM67 与ENAH相互作用,调节肺癌细胞的凋亡和自噬。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-01 DOI: 10.4149/gpb_2023037
Rui Liu, Kun Miao, Ling Gao, Ling He

The aim of this study was to further clarify the functional mechanism of the triangular 67 (TRIM67) gene in lung cancer cells. We detected the expression of TRIM67 in lung cancer cells by RT-qPCR and Western blot, transfected si-NC, si-TRIM67, and pcDNA-ENAH into the cells. The expression of TRIM67 and ENAH was detected by Western blot and immunofluorescence localization, and CO-IP and GST pull-down experiments verified the interaction. Flow cytometry, Western blot, and transmission electron microscopy (TEM) evaluated the apoptosis and autophagy levels. TRIM67 was highly expressed in lung cancer cell lines. Knockdown of TRIM67 promoted apoptosis and autophagy of A549 and NCI-H1299 cells. TRIM67 interacted with the ENAH protein. ENAH restored the effect of knocking down TRIM67 and further inhibited apoptosis and autophagy of A549 and NCI-H1299 cells. TRIM67 inhibits apoptosis and autophagy of lung cancer cells by interacting with ENAH.

本研究旨在进一步阐明三角形 67(TRIM67)基因在肺癌细胞中的功能机制。我们通过 RT-qPCR 和 Western 印迹检测了 TRIM67 在肺癌细胞中的表达,并将 si-NC、si-TRIM67 和 pcDNA-ENAH 转染到细胞中。通过 Western blot 和免疫荧光定位检测了 TRIM67 和 ENAH 的表达,CO-IP 和 GST pull-down 实验验证了其相互作用。流式细胞术、Western印迹和透射电子显微镜(TEM)评估了细胞凋亡和自噬水平。TRIM67在肺癌细胞系中高表达。敲除TRIM67可促进A549和NCI-H1299细胞的凋亡和自噬。TRIM67与ENAH蛋白相互作用。ENAH恢复了敲除TRIM67的效果,并进一步抑制了A549和NCI-H1299细胞的凋亡和自噬。TRIM67通过与ENAH相互作用抑制肺癌细胞的凋亡和自噬。
{"title":"TRIM67 interacts with ENAH to regulate the apoptosis and autophagy of lung cancer cells.","authors":"Rui Liu, Kun Miao, Ling Gao, Ling He","doi":"10.4149/gpb_2023037","DOIUrl":"10.4149/gpb_2023037","url":null,"abstract":"<p><p>The aim of this study was to further clarify the functional mechanism of the triangular 67 (TRIM67) gene in lung cancer cells. We detected the expression of TRIM67 in lung cancer cells by RT-qPCR and Western blot, transfected si-NC, si-TRIM67, and pcDNA-ENAH into the cells. The expression of TRIM67 and ENAH was detected by Western blot and immunofluorescence localization, and CO-IP and GST pull-down experiments verified the interaction. Flow cytometry, Western blot, and transmission electron microscopy (TEM) evaluated the apoptosis and autophagy levels. TRIM67 was highly expressed in lung cancer cell lines. Knockdown of TRIM67 promoted apoptosis and autophagy of A549 and NCI-H1299 cells. TRIM67 interacted with the ENAH protein. ENAH restored the effect of knocking down TRIM67 and further inhibited apoptosis and autophagy of A549 and NCI-H1299 cells. TRIM67 inhibits apoptosis and autophagy of lung cancer cells by interacting with ENAH.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140109823","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of endoplasmic reticulum stress-related genes in the diagnosis and subtyping of non-alcoholic fatty liver disease. 内质网应激相关基因在非酒精性脂肪肝的诊断和亚型分类中的作用。
IF 1.5 4区 生物学 Q3 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-03-01 DOI: 10.4149/gpb_2023042
Zihao Guo, Xiaoxiao Yu, Zhihao Fang, Kai Yang, Changxu Liu, Zhichao Dong, Chang Liu

Non-alcoholic fatty liver disease (NAFLD) is the most prevalent liver disease worldwide. Chronic activation of endoplasmic reticulum stress (ERS) in hepatocytes may promote the development of NAFLD, yet endoplasmic reticulum stress-related genes (ERSGs) have not been studied in NAFLD. Our aim is to study the relationship between ERSGs and the immune microenvironment of NAFLD patients and to construct predictive models. We screened 48 endoplasmic reticulum stress-related differentially expressed genes (ERSR-DEGs) using data from two GEO datasets and the GeneCards database. Enrichment analysis revealed that ERSR-DEGs are closely associated with immune-related pathways and functions. The immune infiltration profile of NAFLD was obtained by single sample gene set enrichment analysis (ssGSEA). There were significant differences in immune cell infiltration and immune function between NAFLD group and control group. Using 113 NAFLD samples, we explored two molecular clusters based on ERSR-DEGs. A five-gene SVM model was selected as the best machine learning model, and a nomogram based on five-gene SVM model showed good predictive efficiency. The mRNA expression levels of POR, PPP1R15A, FOS and FAS were significantly different between NAFLD mice and healthy mice. In conclusion, ERS is closely associated with the development of NAFLD. We established a promising and SVM-based predictive model to assess the risk of disease in patients with ERS subtypes and NAFLD.

非酒精性脂肪肝(NAFLD)是全球发病率最高的肝病。肝细胞中内质网应激(ERS)的慢性激活可能会促进非酒精性脂肪肝的发生,但尚未对非酒精性脂肪肝中的内质网应激相关基因(ERSGs)进行研究。我们的目的是研究ERSGs与非酒精性脂肪肝患者免疫微环境之间的关系,并构建预测模型。我们利用两个 GEO 数据集和 GeneCards 数据库的数据筛选了 48 个内质网应激相关差异表达基因(ERSR-DEGs)。富集分析表明,ERSR-DEGs与免疫相关通路和功能密切相关。通过单样本基因组富集分析(ssGSEA)获得了非酒精性脂肪肝的免疫浸润特征。非酒精性脂肪肝组与对照组在免疫细胞浸润和免疫功能方面存在明显差异。利用 113 个非酒精性脂肪肝样本,我们探索了基于 ERSR-DEGs 的两个分子集群。五基因 SVM 模型被选为最佳机器学习模型,基于五基因 SVM 模型的提名图显示了良好的预测效率。POR、PPP1R15A、FOS和FAS的mRNA表达水平在非酒精性脂肪肝小鼠和健康小鼠之间存在显著差异。总之,ERS与非酒精性脂肪肝的发生密切相关。我们建立了一个基于 SVM 的预测模型,用于评估 ERS 亚型和非酒精性脂肪肝患者的患病风险。
{"title":"The role of endoplasmic reticulum stress-related genes in the diagnosis and subtyping of non-alcoholic fatty liver disease.","authors":"Zihao Guo, Xiaoxiao Yu, Zhihao Fang, Kai Yang, Changxu Liu, Zhichao Dong, Chang Liu","doi":"10.4149/gpb_2023042","DOIUrl":"10.4149/gpb_2023042","url":null,"abstract":"<p><p>Non-alcoholic fatty liver disease (NAFLD) is the most prevalent liver disease worldwide. Chronic activation of endoplasmic reticulum stress (ERS) in hepatocytes may promote the development of NAFLD, yet endoplasmic reticulum stress-related genes (ERSGs) have not been studied in NAFLD. Our aim is to study the relationship between ERSGs and the immune microenvironment of NAFLD patients and to construct predictive models. We screened 48 endoplasmic reticulum stress-related differentially expressed genes (ERSR-DEGs) using data from two GEO datasets and the GeneCards database. Enrichment analysis revealed that ERSR-DEGs are closely associated with immune-related pathways and functions. The immune infiltration profile of NAFLD was obtained by single sample gene set enrichment analysis (ssGSEA). There were significant differences in immune cell infiltration and immune function between NAFLD group and control group. Using 113 NAFLD samples, we explored two molecular clusters based on ERSR-DEGs. A five-gene SVM model was selected as the best machine learning model, and a nomogram based on five-gene SVM model showed good predictive efficiency. The mRNA expression levels of POR, PPP1R15A, FOS and FAS were significantly different between NAFLD mice and healthy mice. In conclusion, ERS is closely associated with the development of NAFLD. We established a promising and SVM-based predictive model to assess the risk of disease in patients with ERS subtypes and NAFLD.</p>","PeriodicalId":12514,"journal":{"name":"General physiology and biophysics","volume":null,"pages":null},"PeriodicalIF":1.5,"publicationDate":"2024-03-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140109822","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
General physiology and biophysics
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1