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The Brain Imaging for Global Health (BRIGHT) Project: Longitudinal cohort study protocol. 大脑成像促进全球健康(BRIGHT)项目:纵向队列研究协议。
Pub Date : 2024-09-05 eCollection Date: 2023-01-01 DOI: 10.12688/gatesopenres.14795.2
Sarah Lloyd-Fox, Sam McCann, Bosiljka Milosavljevic, Laura Katus, Anna Blasi, Chiara Bulgarelli, Maria Crespo-Llado, Giulia Ghillia, Tijan Fadera, Ebrima Mbye, Luke Mason, Fabakary Njai, Omar Njie, Marta Perapoch-Amado, Maria Rozhko, Fatima Sosseh, Mariama Saidykhan, Ebou Touray, Sophie E Moore, Clare E Elwell

There is a scarcity of prospective longitudinal research targeted at early postnatal life which maps developmental pathways of early-stage processing and brain specialisation in the context of early adversity. Follow up from infancy into the one-five year age range is key, as it constitutes a critical gap between infant and early childhood studies. Availability of portable neuroimaging (functional near infrared spectroscopy (fNIRS) and electroencephalography (EEG)) has enabled access to rural settings increasing the diversity of our sampling and broadening developmental research to include previously underrepresented ethnic-racial and geographical groups in low- and middle- income countries (LMICs). The primary objective of the Brain Imaging for Global Health (BRIGHT) project was to establish brain function - using longitudinal data from mother - for-age reference curves infant dyads living in the UK and rural Gambia and investigate the association between context-associated moderators and developmental trajectories across the first two years of life in The Gambia. In total, 265 participating families were seen during pregnancy, at 7-14 days, 1-, 5-, 8-, 12-, 18- and 24-months post-partum. An additional visit is now underway at 3-5 years to assess pre-school outcomes. The majority of our Gambian cohort live in poverty, but while resource-poor in many factors they commonly experience a rich and beneficial family and caregiving context with multigenerational care and a close-knit supportive community. Understanding the impact of different factors at play in such an environment ( i.e., detrimental undernutrition versus beneficial multigenerational family support) will (i) improve the representativeness of models of general cognitive developmental pathways from birth, (ii) identify causal pathways of altered trajectories associated with early adversity at both individual and group level, and (iii) identify the context-associated moderators ( i.e. social context) that protect development despite the presence of poverty-associated challenges. This will in turn contribute to the development of targeted interventions.

目前,针对出生后早期生活的前瞻性纵向研究还很匮乏,这些研究描绘了早期逆境背景下早期处理和大脑特化的发展路径。从婴儿期到一至五岁的跟踪研究非常关键,因为这是婴儿期研究与幼儿期研究之间的关键空白。便携式神经成像(功能性近红外光谱(fNIRS)和脑电图(EEG))的出现使我们能够进入农村环境,增加了取样的多样性,并将发育研究扩大到了中低收入国家(LMICs)以前代表性不足的种族和地域群体。全球健康脑成像(BRIGHT)项目的主要目标是利用生活在英国和冈比亚农村地区的母亲-年龄参考曲线婴儿二元组的纵向数据建立脑功能,并调查冈比亚婴儿出生后头两年的环境相关调节因素与发育轨迹之间的关联。共有 265 个参与家庭在孕期、产后 7-14 天、1-、5-、8-、12-、18-和 24 个月时接受了访问。目前正在进行 3-5 岁的额外访问,以评估学前教育成果。我们的大多数冈比亚同龄人都生活在贫困中,虽然在很多因素上资源贫乏,但他们通常都经历了一个丰富而有益的家庭和照顾环境,拥有多代人的照顾和一个紧密团结的支持性社区。了解在这种环境中不同因素(即有害的营养不良与有益的多代家庭支持)的影响将(i)提高从出生开始的一般认知发展途径模型的代表性,(ii)确定在个人和群体层面与早期逆境相关的轨迹改变的因果途径,以及(iii)确定与环境相关的调节因素(即社会环境),尽管存在与贫困相关的挑战,这些因素仍能保护儿童的发展。这将有助于制定有针对性的干预措施。
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引用次数: 0
Characterization of longitudinal nasopharyngeal microbiome patterns in maternally HIV-exposed Zambian infants. 对母体感染艾滋病毒的赞比亚婴儿鼻咽部微生物组纵向模式的描述。
Pub Date : 2024-08-30 eCollection Date: 2022-01-01 DOI: 10.12688/gatesopenres.14041.2
Aubrey R Odom, Christopher J Gill, Rachel Pieciak, Arshad Ismail, Donald Thea, William B MacLeod, W Evan Johnson, Rotem Lapidot

Background: Previous studies of infants born to HIV-positive mothers have linked HIV exposure to poor outcomes from gastrointestinal and respiratory illnesses, and to overall increased mortality rates. The mechanism behind this is unknown, but it is possible that differences in the nasopharyngeal (NP) microbiome between infants who are HIV-unexposed or HIV-exposed could play a role in perpetuating some outcomes.

Methods: We conducted a longitudinal analysis of 170 NP swabs of healthy infants who are HIV-exposed (n=10) infants and their HIV(+) mothers, and infants who are HIV-unexposed, uninfected (HUU; n=10) .and their HIV(-) mothers. These swabs were identified from a sample library collected in Lusaka, Zambia between 2015 and 2016. Using 16S rRNA gene sequencing, we characterized the maturation of the microbiome over the first 14 weeks of life to determine what quantifiable differences exist between HIV-exposed and HUU infants, and what patterns are reflected in the mothers' NP microbiomes.

Results: In both HIV-exposed and HUU infants, Staphylococcus and Corynebacterium began as primary colonizers of the NP microbiome but were in time replaced by Dolosigranulum, Streptococcus, Moraxella and Haemophilus. When evaluating the interaction between HIV exposure status and time of sampling among infants, the microbe Staphylococcus haemolyticus showed a distinctive high association with HIV exposure at birth. When comparing infants to their mothers with paired analyses, HIV-exposed infants' NP microbiome composition was only slightly different from their HIV(+) mothers at birth or 14 weeks, including in their carriage of S. pneumoniae, H. influenzae, and S. haemolyticus.

Conclusions: Our analyses indicate that the HIV-exposed infants in our study exhibit subtle differences in the NP microbial composition throughout the sampling interval. Given our results and the sampling limitations of our study, we believe that further research must be conducted in order to confidently understand the relationship between HIV exposure and infants' NP microbiomes.

背景:以前对艾滋病毒阳性母亲所生婴儿进行的研究表明,接触艾滋病毒与婴儿患胃肠道和呼吸道疾病的不良后果以及总体死亡率增加有关。其背后的机制尚不清楚,但未暴露于艾滋病病毒或暴露于艾滋病病毒的婴儿鼻咽部(NP)微生物群的差异有可能在某些结果的延续中发挥作用:我们对170个NP拭子进行了纵向分析,这些拭子分别来自HIV暴露的健康婴儿(n=10)及其HIV(+)母亲,以及HIV未暴露、未感染的婴儿(HUU;n=10).及其HIV(-)母亲。这些拭子是从 2015 年至 2016 年在赞比亚卢萨卡收集的样本库中鉴定出来的。利用 16S rRNA 基因测序,我们描述了婴儿出生后 14 周内微生物组的成熟情况,以确定受 HIV 感染的婴儿和 HUU 婴儿之间存在哪些可量化的差异,以及母亲的 NP 微生物组反映了哪些模式:结果:在暴露于艾滋病毒的婴儿和艾滋病毒感染者婴儿中,葡萄球菌和棒状杆菌都是NP微生物群的主要定植者,但随后被多洛西球菌、链球菌、摩拉氏菌和嗜血杆菌所取代。在评估婴儿的艾滋病病毒感染状况与采样时间之间的相互作用时,溶血性葡萄球菌与出生时的艾滋病病毒感染有明显的高度关联。在将婴儿与母亲进行配对分析比较时,HIV暴露婴儿的NP微生物组组成与出生时或14周时的HIV(+)母亲仅略有不同,包括肺炎双球菌、流感嗜血杆菌和溶血性葡萄球菌的携带:我们的分析表明,在我们的研究中,受 HIV 感染的婴儿在整个采样间隔期间的 NP 微生物组成存在细微差别。鉴于我们的研究结果和取样的局限性,我们认为必须开展进一步的研究,以便有把握地了解 HIV 感染与婴儿 NP 微生物组之间的关系。
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引用次数: 0
Feasibility of increasing calcium content of drinking tap water following quality regulations to improve calcium intake at population level. 根据质量法规增加自来水钙含量以提高人口钙摄入量的可行性。
Pub Date : 2024-08-29 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15184.2
Natalia Matamoros, María Bernardita Puchulu, Jorge E Colman Lerner, Eduard Maury-Sintjago, Jorge L López, Verónica Sosio, José M Belizán, Andrés Porta, Gabriela Cormick

Background: Calcium intake is below recommendations in several parts of the world. Improving calcium intake has benefits not only for bone health but also helps to prevent pregnancy hypertension disorders. Calcium concentration of tap water is usually low The aim of the present study was to determine the maximum amount of calcium that can be added to tap water while complying with drinking water Argentine regulations.

Methods: Tap water samples were collected from the Province of Buenos Aires (Argentina). Physicochemical properties and saturation index were measured. Different incremental concentrations of calcium chloride were added to the experimental aliquots.

Results: Baseline water had a mean calcium concentration of 22.00 ± 2.54 mg/L, water hardness of 89.9 ± 6.4 mg/L CaCO 3, and a saturation index of -1.50 ± 0.11. After the addition of 0.4554 ± 0.0071 g of salt, water hard-ness reached 355.0 ± 7.1 mg/L CaCO 3, a calcium concentration of 140.50 ± 2.12 mg/L, and a saturation index -0.53 ± 0.02.

Conclusions: This study shows that at laboratory level it is feasible to increase calcium concentration of drinking water by adding calcium chloride while complying with national standards. Calcium concentration of drinking tap water could be evaluated and minimum calcium concentration of tap water regulated so as to improve calcium intake in populations with low calcium intake.

背景:在世界多个地区,钙的摄入量都低于推荐值。提高钙的摄入量不仅有利于骨骼健康,还有助于预防妊娠高血压疾病。自来水中的钙浓度通常较低。本研究的目的是确定在符合阿根廷饮用水法规的前提下,自来水中可添加的最大钙量:方法:从布宜诺斯艾利斯省(阿根廷)采集自来水样本。测量了水的理化性质和饱和指数。在实验等分中加入不同浓度的氯化钙:基准水的平均钙浓度为 22.00 ± 2.54 mg/L,水硬度为 89.9 ± 6.4 mg/L CaCO 3,饱和指数为 -1.50 ± 0.11。添加 0.4554 ± 0.0071 克食盐后,水硬度达到 355.0 ± 7.1 mg/L CaCO 3,钙浓度为 140.50 ± 2.12 mg/L,饱和指数为 -0.53 ± 0.02:这项研究表明,在实验室水平上,通过添加氯化钙来提高饮用水的钙浓度是可行的,同时也符合国家标准。可以对饮用自来水的钙浓度进行评估,并对自来水的最低钙浓度进行调节,以提高低钙摄入人群的钙摄入量。
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引用次数: 0
Estimating dengue disease and economic burden to inform municipal-level policymakers: Method for a pragmatic city-level observational cohort study. 估算登革热疾病和经济负担,为市级决策者提供信息:务实的城市观测队列研究方法。
Pub Date : 2024-08-08 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15015.3
Nandyan N Wilastonegoro, Sri Andriani, Perigrinus H Sebong, Priya Agarwal-Harding, Donald S Shepard

Background: Recent trials have confirmed the effectiveness of promising dengue control technologies - two vaccines and Wolbachia. These would generally be applied at the municipal level. To help local officials decide which, if any, control strategy to implement, they need affordable, timely, and accurate data on dengue burden. Building on our previous work in Mexico, Indonesia, and Thailand, we developed a streamlined prospective method to estimate dengue burden at the municipal level quickly, accurately, and efficiently.

Methods: The method entails enrolling and repeatedly interviewing 100 patients with laboratory-confirmed dengue. They will be selected after screening and testing about 1,000 patients with clinical dengue. The method will capture both acute and chronic effects relating to disease, economic burden, and psychological impacts (presenteeism). The total time requirements are 1.5 years, comprised of 0.25 years for planning and approvals, 1 year for data collection (a full dengue cycle), and 0 .25 years for data cleaning and analysis. A collaboration with municipal and academic colleagues in the city of Semarang, Central Java, Indonesia shows how the method could be readily applied in Indonesia's eighth largest city (population 1.8 million).

Conclusions: Many surveillance studies gather only information on numbers of cases. This proposed method will provide a comprehensive picture of the dengue burden to the health system, payers, and households at the local level.

背景:最近的试验证实了两种疫苗和 Wolbachia 等有前景的登革热控制技术的有效性。这些技术一般会在市一级应用。为了帮助地方官员决定实施哪种控制策略(如果有的话),他们需要经济实惠、及时准确的登革热负担数据。基于我们之前在墨西哥、印度尼西亚和泰国所做的工作,我们开发了一种简化的前瞻性方法,用于快速、准确、高效地估算市一级的登革热负担:方法:该方法需要招募并反复访问 100 名经实验室确诊的登革热患者。他们将在筛选和检测约 1,000 名临床登革热患者后选出。该方法将收集与疾病、经济负担和心理影响(缺勤)有关的急性和慢性影响。所需时间共计 1.5 年,其中 0.25 年用于规划和审批,1 年用于数据收集(一个完整的登革热周期),0.25 年用于数据清理和分析。与印尼中爪哇省三宝垄市的市政和学术界同行合作,展示了如何在印尼第八大城市(人口 180 万)应用该方法:结论:许多监测研究只收集病例数量的信息。结论:许多监测研究只收集病例数的信息,而这一建议方法将为地方一级的卫生系统、支付者和家庭提供登革热负担的全面情况。
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引用次数: 0
Development of a core outcome set for maternal and perinatal health research and surveillance in light of emerging and ongoing epidemic threats. 根据新出现的和正在发生的流行病威胁,为孕产妇和围产期健康研究和监测制定一套核心成果。
Pub Date : 2024-08-01 eCollection Date: 2024-01-01 DOI: 10.12688/gatesopenres.15136.2
Veronica Pingray, Karen Klein, Juan Pedro Alonso, María Belizan, Gabriella Radice, Magdalena Babinska, Mabel Berrueta, Mercedes Bonet

Background: Maternal and perinatal health is often directly and indirectly affected during infectious disease epidemics. Yet, a lack of evidence on epidemics' impact on women and their offspring delays informed decision-making for healthcare providers, pregnant women, women in the post-pregnancy period and policy-makers. To rapidly generate evidence in these circumstances, we aim to develop a Core Outcome Set (COS) for maternal and perinatal health research and surveillance in light of emerging and ongoing epidemic threats.

Methods: We will conduct a Systematic Review and a four-stage modified Delphi expert consensus. The systematic literature will aim to inform experts on outcomes reported in maternal and perinatal research and surveillance during previous epidemics. The expert consensus will involve two individual, anonymous online surveys to rate outcomes' importance and suggest new ones, one virtual meeting to discuss disagreements, and one in-person meeting to agree on the final COS, outcomes definitions and measurement methods. Four panels will be established to participate in the modified Delphi with expertise in (a) maternal and perinatal health, (b) neonatal health, (c) public health and emergency response, and (d) representation of civil society. We will recruit at least 20 international experts for each stakeholder group, with diverse backgrounds and gender, professional, and geographic balance. Only highly-rated outcomes (with at least 80% of ratings being 7-9 on a 9-point Likert scale) and no more than 10% of low ratings (1-3) will be included in the final COS.

Conclusions: Implementing this COS in future maternal and perinatal research and surveillance, especially in the context of emerging and ongoing epidemic threats, will facilitate the rapid and systematic generation of evidence. It will also enhance the ability of policy-makers, healthcare providers, pregnant women and women in the post-pregnancy period and their families to make well-informed choices in challenging circumstances.

背景:在传染病流行期间,孕产妇和围产期健康往往会受到直接或间接的影响。然而,由于缺乏流行病对妇女及其后代影响的证据,医疗服务提供者、孕妇、孕产妇和政策制定者无法做出明智的决策。为了在这种情况下快速生成证据,我们旨在根据新出现的和正在发生的流行病威胁,为孕产妇和围产期健康研究和监测开发一套核心结果集(COS):方法:我们将进行系统性回顾和四阶段改良德尔菲专家共识。系统性文献旨在向专家们介绍以往流行病期间孕产妇和围产期研究与监测所报告的结果。专家共识将包括两次个人匿名在线调查,以评定结果的重要性并提出新的建议;一次虚拟会议,以讨论分歧;一次现场会议,以商定最终的 COS、结果定义和测量方法。我们将成立四个小组来参与修改后的德尔菲法,这些小组的专业领域包括:(a) 孕产妇和围产期保健;(b) 新生儿保健;(c) 公共卫生和应急响应;(d) 民间社会代表。我们将为每个利益相关者小组招募至少 20 名国际专家,这些专家应具有不同的背景,并在性别、专业和地域方面保持平衡。最终的 COS 将只包括高分结果(在 9 分的李克特量表中,至少 80% 的评分为 7-9 分)和不超过 10% 的低分结果(1-3 分):结论:在今后的孕产妇和围产期研究与监测工作中,尤其是在新出现的和正在发生的流行病威胁背景下,采用这种 COS 将有助于快速、系统地生成证据。它还将提高政策制定者、医疗服务提供者、孕妇和孕后妇女及其家人在具有挑战性的情况下做出明智选择的能力。
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引用次数: 0
The effect of women's bargaining power within couples on contraceptive use in Cameroon. 喀麦隆妇女在夫妻间的讨价还价能力对避孕药具使用的影响。
Pub Date : 2024-07-29 eCollection Date: 2020-01-01 DOI: 10.12688/gatesopenres.13100.2
Dimitri Tchakounté Tchuimi, Benjamin Fomba Kamga

Background: The prevalence of contraception among married women, evaluated at 23%, is low in Cameroon. Maternal death rates, estimated at 782 deaths per 100,000 live births, are very worrying. The National Strategic Plan for Reproductive, Maternal, Newborn and Child Health (2015-2020) and the Health Sector Strategy (2016-2027) focuses on increasing modern contraceptive prevalence as a means to reduce maternal death. This paper identifies women's bargaining power as a factor that may stimulate contraceptive use. The objective of this study is to analyze the association between women's bargaining power within couples and modern contraceptive use.

Methods: The data used come from the fifth Demographic and Health Survey (DHS) conducted in 2018. Women's bargaining power within couple is measured by a Woman Bargaining Power Composite Index (WBPCI) built through a multiple correspondence analysis. The logistic regression model was used to analyze the relationship between WBPCI and modern contraceptive use.

Results: The results of the descriptive statistics show that women's bargaining power is higher among women who use contraception than for those who do not. The results of the logistic regression model show that an increase of WBPCI was significantly associated with higher chances of using a modern contraceptive method (OR = 1.352; 95% CI: 1.257, 1.454; p <0.01). The education of women is also a key determinant since educated women were at least two times more likely to use a modern contraceptive method than uneducated women.

Conclusions: To reduce high maternal death rates in Cameroon, public health policies should not only focus on the health system itself, but should also focus on social policies to empower women in the household.

背景: 喀麦隆已婚妇女的避孕率很低,估计为 23%。孕产妇死亡率估计为每 10 万活产 782 例死亡,令人十分担忧。国家生殖、孕产妇、新生儿和儿童健康战略计划(2015-2020 年)和卫生部门战略(2016-2027 年)将重点放在提高现代避孕普及率上,以此降低孕产妇死亡率。本文认为,妇女的议价能力是可能刺激避孕药具使用的一个因素。本研究的目的是分析妇女在夫妻中的议价能力与现代避孕药具使用之间的关联。研究方法 所用数据来自 2018 年进行的第五次人口与健康调查(DHS)。通过多重对应分析建立的妇女议价能力综合指数(WBPCI)来衡量妇女在夫妻间的议价能力。采用逻辑回归模型分析 WBPCI 与现代避孕药具使用之间的关系。结果 描述性统计结果显示,使用避孕药具的妇女的议价能力高于未使用避孕药具的妇女。逻辑回归模型的结果表明,WBPCI 的增加与使用现代避孕方法的几率增加显著相关(OR = 1.352;95% CI:1.257, 1.454;p 结论: 为了降低喀麦隆较高的孕产妇死亡率,公共卫生政策不仅应关注卫生系统本身,还应关注赋予家庭妇女权力的社会政策。
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引用次数: 0
Contraceptive access and use before and during the COVID-19 pandemic: a mixed-methods study in South Africa and Zambia. 新冠肺炎大流行对妇女避孕药具使用的影响:南非和赞比亚的混合方法研究
Pub Date : 2024-07-18 eCollection Date: 2023-01-01 DOI: 10.12688/gatesopenres.14590.1
Rebecca L Callahan, Alice F Cartwright, Mags Beksinska, Margaret Kasaro, Jennifer H Tang, Cecilia Milford, Christina Wong, Marissa Velarde, Virginia Maphumulo, Maria Fawzy, Manze Chinyama, Esther Chabu, Mayaba Mudenda, Jennifer Smit

Background: The COVID-19 pandemic affected global access to health services, including contraception We sought to explore effects of the pandemic on family planning (FP) service provision and use in South Africa and Zambia, including on implant and intrauterine device (IUD) users' desire and ability to obtain removal.

Methods: Between August 2020 and April 2021, we conducted surveys with 537 women participating in an ongoing longitudinal contraceptive continuation study. We also carried out in-depth interviews with 39 of the survey participants and 36 key informants involved in FP provision. We conducted descriptive analysis of survey responses and thematic analysis of interviews.

Results: Contraceptive use changed minimally in this sample with the emergence of COVID-19. Fewer than half of women (n=220) reported that they tried to access FP since the start of the pandemic. The vast majority of those seeking services were using short-acting methods and 95% were able to obtain their preferred method. The proportion of women not using a method before and after the start of the pandemic did not change in Zambia (31%), and increased from 8% to 10% in South Africa. Less than 7% of implant or IUD users in either country reported wanting removal. Among the 22 who sought removal, 10 in Zambia and 6 in South Africa successfully obtained removal. In qualitative interviews, those reporting challenges to service access specifically mentioned long queues, deprioritization of contraceptive services, lack of transportation, stock-outs, and fear of contracting COVID-19 at a facility. Key informants reported stock-outs, especially of injectables, and staff shortages as barriers.

Conclusions: We did not find a substantial impact of COVID-19 on contraceptive access and use among this sample; however, providers and others involved in service provision identified risks to continuity of care. As the COVID-19 pandemic wanes, it continues to be important to monitor people's ability to access their preferred contraceptive methods.

背景:新冠肺炎大流行影响了全球获得包括避孕在内的卫生服务的机会。我们试图探讨大流行对南非和赞比亚计划生育(FP)服务的提供和使用的影响,包括对植入物和宫内节育器(IUD)使用者获得移除的愿望和能力的影响。方法:在2020年8月至2021年4月期间,我们对537名参与正在进行的纵向避孕继续研究的女性进行了调查。我们还对39名调查参与者和36名参与FP提供的关键线人进行了深入采访。我们对调查回复进行了描述性分析,并对访谈进行了主题分析。结果:随着新冠肺炎的出现,该样本中避孕药具的使用变化最小。自疫情开始以来,不到一半的女性(n=220)报告称试图获得FP,绝大多数使用短期方法。在那些寻求服务的人中,95%的人获得了他们喜欢的方法。赞比亚在新冠疫情开始前后未使用该方法的妇女比例没有变化(31%);在南非,这一比例从8%上升到10%。在这两个国家中,只有不到7%的植入物或宫内节育器使用者表示希望摘除。在寻求遣返的人中(n=22),赞比亚91%(n=10)和南非55%(n=6)成功遣返。在定性采访中,在获得计划生育服务方面面临挑战的妇女提到了排长队、避孕服务的优先地位降低、缺乏交通、缺货以及担心在设施感染新冠肺炎。关键线人报告说,库存不足,尤其是注射剂,以及员工短缺是障碍。结论:在该样本中,我们没有发现新冠肺炎对避孕途径的实质性影响;然而,提供者和其他参与服务提供的人发现了护理连续性的风险。随着新冠肺炎疫情的减弱,监测人们获得首选避孕方法的能力仍然很重要。
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引用次数: 0
TitrationAnalysis: a tool for high throughput binding kinetics data analysis for multiple label-free platforms. 滴定分析:用于多个无标记平台的高通量结合动力学数据分析的工具
Pub Date : 2024-06-28 eCollection Date: 2023-01-01 DOI: 10.12688/gatesopenres.14743.1
Kan Li, Richard H C Huntwork, Gillian Q Horn, S Munir Alam, Georgia D Tomaras, S Moses Dennison

Label-free techniques including Surface Plasmon Resonance (SPR) and Biolayer Interferometry (BLI) are biophysical tools widely used to collect binding kinetics data of bimolecular interactions. To efficiently analyze SPR and BLI binding kinetics data, we have built a new high throughput analysis tool named the TitrationAnalysis. It can be used as a package in the Mathematica scripting environment and ultilize the non-linear curve-fitting module of Mathematica for its core function. This tool can fit the binding time course data and estimate association and dissociation rate constants ( k a and k d respectively) for determining apparent dissociation constant ( K D ) values. The high throughput fitting process is automatic, requires minimal knowledge on Mathematica scripting and can be applied to data from multiple label-free platforms. We demonstrate that the TitrationAnalysis is optimal to analyze antibody-antigen binding data acquired on Biacore T200 (SPR), Carterra LSA (SPR imaging) and ForteBio Octet Red384 (BLI) platforms. The k a , k d and K D values derived using TitrationAnalysis very closely matched the results from the commercial analysis software provided specifically for these instruments. Additionally, the TitrationAnalysis tool generates user-directed customizable results output that can be readily used in downstream Data Quality Control associated with Good Clinical Laboratory Practice operations. With the versatility in source of data input source and options of analysis result output, the TitrationAnalysis high throughput analysis tool offers investigators a powerful alternative in biomolecular interaction characterization.

包括表面等离子体共振(SPR)和生物层干涉术(BLI)在内的无标记技术是广泛用于收集双分子相互作用的结合动力学数据的生物物理工具。为了有效地分析SPR和BLI结合动力学数据,我们建立了一个新的高通量分析工具,名为滴定分析。它可以作为一个包在Mathematica脚本环境中使用,并将Mathematica的非线性曲线拟合模块用于其核心功能。该工具可以拟合结合时程数据,并估计缔合和离解速率常数(分别为ka和kd),以确定表观离解常数(kd)值。高通量拟合过程是自动的,只需要最少的Mathematica脚本知识,并且可以应用于来自多个无标签平台的数据。我们证明,滴定分析是分析在Biacore T200(SPR)、Carterra LSA(SPR成像)和ForteBio Octet Red384(BLI)平台上获得的抗体-抗原结合数据的最佳方法。使用滴定分析得出的ka、kd和kd值与专门为这些仪器提供的商业分析软件的结果非常吻合。此外,滴定分析工具生成用户导向的可定制结果输出,可在与良好临床实验室操作相关的下游数据质量控制中轻松使用。滴定分析高通量分析工具具有数据输入源和分析结果输出选项的多功能性,为研究人员提供了生物分子相互作用表征的强大替代方案。
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引用次数: 0
Burden, causes, and risk factors of perinatal mortality in Eastern Africa: a protocol for systematic review and meta-analysis. 东非围产期死亡的负担、原因和风险因素:系统回顾和荟萃分析协议。
Pub Date : 2024-05-08 eCollection Date: 2022-01-01 DOI: 10.12688/gatesopenres.13915.2
Yohanis Alemeshet Asefa, Lars Åke Persson, Anna C Seale, Nega Assefa

Background: Although global mortality rates in children under 5 years have decreased substantially in the last 30 years, there remain around 2.6 million stillbirths and 2.9 million neonatal deaths each year. The majority of these deaths occur in Africa and South Asia. To reduce perinatal deaths in East Africa, knowledge of the burden, but also the risk factors and causes of perinatal deaths are crucial. To the best of our knowledge, reviews have previously focused on the burden of perinatal deaths; here we aim to synthesize evidence on the burden, causes, and risk factors for perinatal mortality in East Africa.

Methods: We will conduct a systematic literature search in Medline, Web of Science, EMBASE, Global Health, SCOPUS, Cochrane Library, CINAHL, HINARI, African Index Medicus, African Journals Online (AJOL), and WHO African Regional Office (AFRO) Library. The study population includes all fetuses and newborns from ≥22 weeks of gestation (birth weight ≥500gm) to 7 days after birth, with reported causes or/and determinants as exposure, and perinatal mortality (stillbirths and/or early neonatal deaths) as an outcome. We will include studies from 2010 to 2022, and to facilitate the inclusion of up-to-date data, we will request recent data from ongoing surveillance in the region. To assess the quality of included studies, we will use the Joanna Briggs Institute quality assessment tool for observational and trial studies. We will analyze the data using STATA version 17 statistical software and assess heterogeneity and publication bias by Higgins' I 2 and funnel plot, respectively.

Conclusions: This systematic review will search for published studies, and seek unpublished data, on the burden, causes, and risk factors of perinatal mortality in East Africa. Findings will be reported, and gaps in the evidence base identified, with recommendations, with the ultimate aim of reducing perinatal deaths.

Protocol registration: PROSPERO-CRD42021291719.

背景:尽管全球 5 岁以下儿童死亡率在过去 30 年中大幅下降,但每年仍有约 260 万死胎和 290 万新生儿死亡。这些死亡大多发生在非洲和南亚。要减少东非的围产期死亡,了解围产期死亡的负担、风险因素和原因至关重要。据我们所知,以前的综述主要集中在围产期死亡的负担方面;在此,我们旨在综合东非围产期死亡的负担、原因和风险因素方面的证据:我们将在 Medline、Web of Science、EMBASE、Global Health、SCOPUS、Cochrane Library、CINAHL、HINARI、African Index Medicus、African Journals Online (AJOL) 和 WHO African Regional Office (AFRO) Library 中进行系统的文献检索。研究对象包括妊娠≥22周(出生体重≥500gm)至出生后7天的所有胎儿和新生儿,以报告的原因或/和决定因素作为暴露,围产期死亡率(死胎和/或新生儿早期死亡)作为结果。我们将纳入 2010 年至 2022 年的研究,为便于纳入最新数据,我们将要求提供该地区持续监测的最新数据。为了评估所纳入研究的质量,我们将使用乔安娜-布里格斯研究所(Joanna Briggs Institute)的观察性和试验性研究质量评估工具。我们将使用 STATA 17 版统计软件分析数据,并分别通过 Higgins' I 2 和漏斗图评估异质性和发表偏倚:本系统综述将搜索有关东非围产期死亡率的负担、原因和风险因素的已发表研究,并寻求未发表的数据。将报告研究结果,找出证据基础中的差距,并提出建议,最终目的是减少围产期死亡:PROSPERO-CRD42021291719.
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引用次数: 0
Strengths and weaknesses of the South-South Learning Exchange: a qualitative analysis of experts' perspectives. 南南学习交流的优缺点:对专家观点的定性分析。
Pub Date : 2024-03-27 eCollection Date: 2023-01-01 DOI: 10.12688/gatesopenres.14699.2
Isotta Triulzi, Rita Kabra, Komal Preet Allagh, James Kiarie

Background: South-South learning exchange (SSLE) refers to an interactive learning process where peers exchange knowledge and experience to work towards a beneficial change. Despite organizations having recently increased the opportunity to run SSLEs, the SSLE support mechanisms and processes are not well documented in the scientific literature. This study explored experts' perspectives on SSLEs, strengths, weaknesses and mechanisms leading to sustainable outcomes.

Methods: We conducted a qualitative study using semi-structured interviews on experiences of participants and organizers of SSLEs. Data were collected between 1st September 2021 to 26th November 2021. All data were digitally recorded, transcribed verbatim, and analysed. In the analysis, we adopted an inductive approach derived from thematic analysis.

Results: Sixteen experts, who have participated in or facilitated one or more SSLE, were interviewed. The experts' accounts demonstrated an appreciation of participants' empowerment, positive peer-to-peer "mind change" and convincing and powerful hands-on learning of this approach as strengths in the implementation of the SSLE. Being resource heavy, participant and donor reluctance and absence of a validated methodology emerged as main weaknesses of the South-South learning approach, which could impair the effectiveness of this scheme.

Conclusions: The strengths of SSLEs are anchored in the theories of experiential and social learning, highlighting SSLE's potential to create an environment that enhances knowledge exchange. the study highlights the challenges SSLE initiatives face. In particular, these include limited commitment and funds, limited evidence of impact, disparate approaches, and the absence of standardized guidelines and evaluation practices.

背景:南南学习交流(SSLE)指的是一种互动学习过程,在这一过程中,同伴们交流知识和经验,努力实现有益的改变。尽管各组织最近增加了开展南南学习交流的机会,但科学文献中对南南学习交流的支持机制和过程却没有很好的记载。本研究探讨了专家们对 SSLE 的看法、优势、劣势以及可持续成果的实现机制:我们采用半结构化访谈的方式,对 SSLE 的参与者和组织者的经验进行了定性研究。数据收集时间为 2021 年 9 月 1 日至 2021 年 11 月 26 日。所有数据都进行了数字录音、逐字记录和分析。在分析过程中,我们采用了主题分析法中的归纳法:16 位专家接受了访谈,他们参与或推动了一次或多次 SSLE。专家们的叙述表明,在 SSLE 的实施过程中,参与者的赋权、同伴间积极的 "思想转变 "以及令人信服和有力的实践学习是其优势所在。南南学习方法的主要缺点是资源繁重、参与者和捐助者不情愿以及缺乏经过验证的方 法,这可能会损害该计划的有效性:结论:南南学习方法的优势在于经验学习和社会学习理论,突出了南南学习方法在创造 一个促进知识交流的环境方面的潜力。特别是,这些挑战包括承诺和资金有限、影响证据有限、方法各异以及缺乏标准化准则和评估实践。
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引用次数: 0
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Gates Open Research
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