Pub Date : 2019-02-15DOI: 10.1158/1538-7445.SABCS18-GS1-05
Daniel P. Hollern, Nuo Xu, Kevin R. Mott, Xiaping He, Kelly Carey-Ewend, Ds Marron, James B. Ford, J. Parker, B. Vincent, J. Serody, C. Perou
Immune checkpoint inhibitor (ICI) therapies have led to remarkable clinical responses in cancers such as melanoma and non-small cell lung cancer. In breast cancer, current immunotherapy trials have placed an emphasis on triple negative breast cancers (TNBC), where early results suggest response rates of 10-20%. Thus, it is critical to identify predictive biomarkers to enhance patient selection for immunotherapy. With this goal in mind, we simulated a clinical trial employing anti-PD1 and anti-CTLA therapies in immune-intact genetically engineered mouse models (GEMMs) of TNBC. Testing of ICI therapies on 8 different GEMMs demonstrated that each model was resistant. Whole exome sequencing showed that each model also harbored a low mutation burden. Given that mutation load is predictive of immunotherapy response in other cancer types, and that Apobec3B activity is associated with higher tumor mutation burden (TMB) in breast cancer, we created two different tumor lines with overexpression of murine Apobec3. In contrast to the parental lines, the Apobec3 overexpressing lines showed an elevated tumor mutation burden and new mutations were consistent with the Apobec mutation signature. These TNBC lines with new mutations resulting from Apobec3 activity were exquisitely sensitive to anti-PD1/anti-CTLA4 combination therapy; as assessed by reduction in tumor volume and extended overall survival. To identify features that predict response, we examined resistant and sensitive tumors at pretreatment, at 1 week of treatment, and at end stage by flow cytometry and mRNA-seq. Gene expression profiling identified multiple immune signatures as predictive of response to ICI therapy; specifically CD8+ T-effector memory cells, CD4+ T-cells, and activated B-Cells. Similarly, gene expression analysis showed that these cell types increased at 1 week of therapy in sensitive models but not in resistant models. Flow cytometry confirmed these predictions. Next, we used an antibody based approach to separately deplete CD4+ T-Cells, CD8+ T-cells, or B-cells in Apobec3 mutagenized murine tumors receiving aPD1/aCTLA4 combination therapy. In each case, depletion of these populations significantly reduced the therapeutic response. However, mice receiving combination immunotherapy and depleted for CD8+ T-cells still exhibited a significant extension in overall survival compared to non-treated controls. In contrast, the CD4+ T-cell depleted mice and B-cell depleted mice exhibited no ICI therapeutic benefit. Together, these data point to key immune biomarkers of response to anti-PD1/anti-CTLA4 therapy; we have further developed a genomic predictor of ICI response using our murine models and will test this on a human TNBC data set. Lastly, this GEMM system provides a rich RNA-seq resource, and new immune-activated models for TNBC, which uncovered a key role for B-cells and CD4+ T-cells in response to ICI therapies. Citation Format: Hollern DP, Xu N, Mott KR, He X, Carey-Ewend K, Marro
免疫检查点抑制剂(ICI)疗法在黑色素瘤和非小细胞肺癌等癌症中导致了显着的临床反应。在乳腺癌方面,目前的免疫治疗试验侧重于三阴性乳腺癌(TNBC),早期结果表明应答率为10-20%。因此,确定预测性生物标志物以增强患者对免疫治疗的选择是至关重要的。考虑到这一目标,我们在免疫完整的TNBC基因工程小鼠模型(GEMMs)中模拟了一项使用抗pd1和抗ctla疗法的临床试验。在8种不同的GEMMs上进行的ICI治疗测试表明,每种模型都具有耐药性。全外显子组测序表明,每种模型也具有较低的突变负担。鉴于突变负荷可以预测其他癌症类型的免疫治疗反应,并且Apobec3B活性与乳腺癌较高的肿瘤突变负荷(TMB)相关,我们创建了两种不同的小鼠Apobec3过表达的肿瘤系。与亲本系相比,Apobec3过表达系表现出更高的肿瘤突变负担,新的突变与Apobec3突变特征一致。这些由Apobec3活性引起的新突变的TNBC细胞系对抗pd1 /抗ctla4联合治疗非常敏感;通过减少肿瘤体积和延长总生存期来评估。为了确定预测反应的特征,我们通过流式细胞术和mRNA-seq检测了预处理、治疗1周和终末期的耐药和敏感肿瘤。基因表达谱确定了多种免疫特征,可预测对ICI治疗的反应;特别是CD8+ t效应记忆细胞,CD4+ t细胞和活化的b细胞。同样,基因表达分析显示,在敏感模型中,这些细胞类型在治疗1周时增加,而在耐药模型中没有增加。流式细胞术证实了这些预测。接下来,我们使用基于抗体的方法分别在接受aPD1/aCTLA4联合治疗的Apobec3突变小鼠肿瘤中消耗CD4+ t细胞、CD8+ t细胞或b细胞。在每种情况下,这些群体的减少显著降低了治疗反应。然而,与未接受治疗的对照组相比,接受联合免疫治疗和CD8+ t细胞缺失的小鼠的总生存期仍显着延长。相比之下,CD4+ t细胞缺失小鼠和b细胞缺失小鼠没有表现出ICI治疗效果。总之,这些数据指出了抗pd1 /抗ctla4治疗反应的关键免疫生物标志物;我们利用小鼠模型进一步开发了ICI反应的基因组预测因子,并将在人类TNBC数据集上进行测试。最后,该GEMM系统为TNBC提供了丰富的RNA-seq资源和新的免疫激活模型,揭示了b细胞和CD4+ t细胞在ICI治疗应答中的关键作用。引用格式:Hollern DP, Xu N, Mott KR, He X, Carey-Ewend K, Marron DS, Ford J, Parker JS, Vincent BG, serdy JS, Perou CM。Apobec3诱变通过激活b细胞和CD4+ t细胞使三阴性乳腺癌小鼠模型对免疫治疗敏感[摘要]。2018年圣安东尼奥乳腺癌研讨会论文集;2018年12月4-8日;费城(PA): AACR;癌症杂志2019;79(4增刊):摘要nr GS1-05。
{"title":"Abstract GS1-05: Apobec3 induced mutagenesis sensitizes murine models of triple negative breast cancer to immunotherapy by activating B-cells and CD4+ T-cells","authors":"Daniel P. Hollern, Nuo Xu, Kevin R. Mott, Xiaping He, Kelly Carey-Ewend, Ds Marron, James B. Ford, J. Parker, B. Vincent, J. Serody, C. Perou","doi":"10.1158/1538-7445.SABCS18-GS1-05","DOIUrl":"https://doi.org/10.1158/1538-7445.SABCS18-GS1-05","url":null,"abstract":"Immune checkpoint inhibitor (ICI) therapies have led to remarkable clinical responses in cancers such as melanoma and non-small cell lung cancer. In breast cancer, current immunotherapy trials have placed an emphasis on triple negative breast cancers (TNBC), where early results suggest response rates of 10-20%. Thus, it is critical to identify predictive biomarkers to enhance patient selection for immunotherapy. With this goal in mind, we simulated a clinical trial employing anti-PD1 and anti-CTLA therapies in immune-intact genetically engineered mouse models (GEMMs) of TNBC. Testing of ICI therapies on 8 different GEMMs demonstrated that each model was resistant. Whole exome sequencing showed that each model also harbored a low mutation burden. Given that mutation load is predictive of immunotherapy response in other cancer types, and that Apobec3B activity is associated with higher tumor mutation burden (TMB) in breast cancer, we created two different tumor lines with overexpression of murine Apobec3. In contrast to the parental lines, the Apobec3 overexpressing lines showed an elevated tumor mutation burden and new mutations were consistent with the Apobec mutation signature. These TNBC lines with new mutations resulting from Apobec3 activity were exquisitely sensitive to anti-PD1/anti-CTLA4 combination therapy; as assessed by reduction in tumor volume and extended overall survival. To identify features that predict response, we examined resistant and sensitive tumors at pretreatment, at 1 week of treatment, and at end stage by flow cytometry and mRNA-seq. Gene expression profiling identified multiple immune signatures as predictive of response to ICI therapy; specifically CD8+ T-effector memory cells, CD4+ T-cells, and activated B-Cells. Similarly, gene expression analysis showed that these cell types increased at 1 week of therapy in sensitive models but not in resistant models. Flow cytometry confirmed these predictions. Next, we used an antibody based approach to separately deplete CD4+ T-Cells, CD8+ T-cells, or B-cells in Apobec3 mutagenized murine tumors receiving aPD1/aCTLA4 combination therapy. In each case, depletion of these populations significantly reduced the therapeutic response. However, mice receiving combination immunotherapy and depleted for CD8+ T-cells still exhibited a significant extension in overall survival compared to non-treated controls. In contrast, the CD4+ T-cell depleted mice and B-cell depleted mice exhibited no ICI therapeutic benefit. Together, these data point to key immune biomarkers of response to anti-PD1/anti-CTLA4 therapy; we have further developed a genomic predictor of ICI response using our murine models and will test this on a human TNBC data set. Lastly, this GEMM system provides a rich RNA-seq resource, and new immune-activated models for TNBC, which uncovered a key role for B-cells and CD4+ T-cells in response to ICI therapies. Citation Format: Hollern DP, Xu N, Mott KR, He X, Carey-Ewend K, Marro","PeriodicalId":12697,"journal":{"name":"General Session Abstracts","volume":"1 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2019-02-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"88417407","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}