{"title":"Annals of Neurology: Volume 99, Number 2, February 2026","authors":"","doi":"10.1002/ana.78178","DOIUrl":"https://doi.org/10.1002/ana.78178","url":null,"abstract":"","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":"99 2","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-02-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/ana.78178","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146176310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Maurizio Grassano, Francesca Palumbo, Gabriele Mora, Salvatore Gallone, Giovanni De Marco, Ilaria Merulla, Claudia Paolantonio, Alessandra Maccabeo, Antonio Canosa, Umberto Manera, Rosario Vasta, Barbara Iazzolino, Marcella Testa, Giuseppe Fuda, Paolina Salamone, Giulia Marchese, Federico Casale, Cristina Moglia, Andrea Calvo, Giuseppe Borghero, Adriano Chiò
Background: Amyotrophic lateral sclerosis (ALS) shows sex differences in incidence and age of onset, yet the underlying biological mechanisms remain poorly understood.
Methods: We investigated sex-specific genetic architecture in an Italian ALS cohort with whole-genome sequencing (1,333 ALS cases, 755 controls). We performed a sex-stratified burden analysis of rare variants in ALS-associated genes and compared the proportions of male and female ALS patients carrying pathogenic or rare damaging variants. Key findings were replicated in the AnswerALS cohort (n = 723). Gene-specific sex ratios and familial history for C9ORF72, SOD1, and TARDBP were examined in an expanded dataset of 2,301 Italian ALS patients.
Results: Sex-stratified burden testing revealed that rare variants in ALS genes were enriched in female cases versus controls (odds ratio [OR] 5.47, 95% confidence interval [CI] 1.60-34.29) but not in male cases. Female ALS patients more frequently carried rare damaging variants compared to males (23.2% vs 18.3%; OR 1.38, 95% CI 1.05-1.81), a finding that was replicated in the AnswerALS cohort (18.9% vs 12.4%; OR 1.58, 95% CI 1.10-2.26). Gene-level analyses of TARDBP carriers revealed a male predominance (2.1:1), yet a higher rate of familial history among females (40.4% vs 24.5%; OR 2.13, 95% CI 1.03-4.39).
Interpretation: Females with ALS exhibited a higher overall burden of rare damaging variants, suggesting sex-related differences in genetic liability. Gene-level analyses indicate that the influence of sex varies across ALS genes, particularly TARDBP. These findings help explain epidemiological patterns and have implications for the identification of sex-linked protective mechanisms. ANN NEUROL 2026.
背景:肌萎缩性侧索硬化症(ALS)在发病率和发病年龄上存在性别差异,但其潜在的生物学机制尚不清楚。方法:我们用全基因组测序研究了意大利ALS队列的性别特异性遗传结构(1333例ALS病例,755例对照)。我们对ALS相关基因的罕见变异进行了性别分层负担分析,并比较了男性和女性ALS患者携带致病性或罕见破坏性变异的比例。关键发现在AnswerALS队列(n = 723)中得到了重复。在2301名意大利ALS患者的扩展数据集中,研究了C9ORF72、SOD1和TARDBP的基因特异性性别比例和家族史。结果:性别分层负担测试显示,女性患者与对照组相比,ALS基因的罕见变异更为丰富(优势比[OR] 5.47, 95%可信区间[CI] 1.60-34.29),但男性患者则不然。与男性相比,女性ALS患者更频繁地携带罕见的破坏性变异(23.2% vs 18.3%; OR 1.38, 95% CI 1.05-1.81),这一发现在AnswerALS队列中也得到了重复(18.9% vs 12.4%; OR 1.58, 95% CI 1.10-2.26)。TARDBP携带者的基因水平分析显示男性占优势(2.1:1),但女性的家族史比例更高(40.4% vs 24.5%; OR 2.13, 95% CI 1.03-4.39)。解释:患有ALS的女性表现出更高的罕见破坏性变异的总体负担,表明遗传倾向性存在性别相关差异。基因水平分析表明,性别对ALS基因的影响各不相同,尤其是TARDBP。这些发现有助于解释流行病学模式,并对确定与性别相关的保护机制具有启示意义。Ann neurol 2026。
{"title":"Sex-Specific Genetic Architecture of ALS: Evidence of a Female Protective Effect?","authors":"Maurizio Grassano, Francesca Palumbo, Gabriele Mora, Salvatore Gallone, Giovanni De Marco, Ilaria Merulla, Claudia Paolantonio, Alessandra Maccabeo, Antonio Canosa, Umberto Manera, Rosario Vasta, Barbara Iazzolino, Marcella Testa, Giuseppe Fuda, Paolina Salamone, Giulia Marchese, Federico Casale, Cristina Moglia, Andrea Calvo, Giuseppe Borghero, Adriano Chiò","doi":"10.1002/ana.78172","DOIUrl":"10.1002/ana.78172","url":null,"abstract":"<p><strong>Background: </strong>Amyotrophic lateral sclerosis (ALS) shows sex differences in incidence and age of onset, yet the underlying biological mechanisms remain poorly understood.</p><p><strong>Methods: </strong>We investigated sex-specific genetic architecture in an Italian ALS cohort with whole-genome sequencing (1,333 ALS cases, 755 controls). We performed a sex-stratified burden analysis of rare variants in ALS-associated genes and compared the proportions of male and female ALS patients carrying pathogenic or rare damaging variants. Key findings were replicated in the AnswerALS cohort (n = 723). Gene-specific sex ratios and familial history for C9ORF72, SOD1, and TARDBP were examined in an expanded dataset of 2,301 Italian ALS patients.</p><p><strong>Results: </strong>Sex-stratified burden testing revealed that rare variants in ALS genes were enriched in female cases versus controls (odds ratio [OR] 5.47, 95% confidence interval [CI] 1.60-34.29) but not in male cases. Female ALS patients more frequently carried rare damaging variants compared to males (23.2% vs 18.3%; OR 1.38, 95% CI 1.05-1.81), a finding that was replicated in the AnswerALS cohort (18.9% vs 12.4%; OR 1.58, 95% CI 1.10-2.26). Gene-level analyses of TARDBP carriers revealed a male predominance (2.1:1), yet a higher rate of familial history among females (40.4% vs 24.5%; OR 2.13, 95% CI 1.03-4.39).</p><p><strong>Interpretation: </strong>Females with ALS exhibited a higher overall burden of rare damaging variants, suggesting sex-related differences in genetic liability. Gene-level analyses indicate that the influence of sex varies across ALS genes, particularly TARDBP. These findings help explain epidemiological patterns and have implications for the identification of sex-linked protective mechanisms. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-02-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146148571","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Alice Saparov, Ivana Dzinovic, Theresa Brunet, Vicente A Yépez, Florian Hölzlwimmer, Elisabetta Indelicato, Birgit Assmann, Susann Badmann, Diana Ballhausen, Steffen Berweck, Felix Brechtmann, Melanie Brugger, Kevork Derderian, Felix Distelmaier, Philip Harrer, Denisa Harvanova, Petra Havrankova, Ann-Kathrin Jaroszynski, Miriam Kolnikova, Robert Kopajtich, Anne Koy, Magdalena Krygier, Lukas Kunc, Katarina Kusikova, Oliver Maier, Maria Mazurkiewicz-Bełdzińska, Christian Mertes, Ava Oberlack, Timo Roser, Alexandra Sitzberger, Ugo Sorrentino, Antonia M Stehr, Katharina Vill, Matias Wagner, Holger Prokisch, Sylvia Boesch, Jan Necpal, Robert Jech, Juliane Winkelmann, Elisabeth Graf, Julien Gagneur, Matej Skorvanek, Michael Zech
Objective: Genomic sequencing leaves >50% of dystonia-affected individuals without a diagnosis. Where DNA-oriented approaches remain insufficient, integrating multiomics is essential to advance genome interpretation. Herein, we incorporated RNA sequencing (RNA-seq) data from 167 patients with dystonia across a range of ages and presentations.
Methods: We leveraged an RNA-seq analysis pipeline, focused on the identification of expression and splicing aberrations, on RNA-seq from skin biopsies. The recruited patients had early-onset dystonia in 85.0%, non-focal dystonia in 92.2%, and coexisting features in 76.0%. Thirty-six patient samples with pre-identified variants (36/167, 21.6%) and 131 samples with no previously prioritized diagnostic candidates from genomic sequencing (131/167, 78.4%) were evaluated.
Results: We found that >80% of dystonia-associated genes were detected by fibroblast RNA-seq. Expression and splicing aberration analyses produced a manageable number of significant RNA defects affecting dystonia-associated genes. The approach was especially successful in validating pathogenic effects of loss-of-function variants, with disease-relevant RNA-underexpression detected for 66.7% (10/15). Studying aberrant expression and splicing in the context of other pre-identified variant types yielded relevant results in 28.6% (6/21 samples). We obtained a 6.9% (9/131) diagnostic uplift for patients without prior candidates, all of whom exhibited combined dystonia with autosomal recessive inheritance. The new diagnoses from RNA-seq and genomic reanalysis were based on previously neglected splice-region (3/9) and deep(er) intronic (6/9) variants. For the observed events, integration of new machine-learning scores predicted corresponding aberrant gene expression in the brain.
Interpretation: Fibroblast-based RNA-seq in our selected cohort improved variant interpretation and offered a modest yield in patients without prior candidate variants. ANN NEUROL 2026.
{"title":"Fibroblast Transcriptomics in Molecular Diagnostics of a Comprehensive Dystonia Cohort.","authors":"Alice Saparov, Ivana Dzinovic, Theresa Brunet, Vicente A Yépez, Florian Hölzlwimmer, Elisabetta Indelicato, Birgit Assmann, Susann Badmann, Diana Ballhausen, Steffen Berweck, Felix Brechtmann, Melanie Brugger, Kevork Derderian, Felix Distelmaier, Philip Harrer, Denisa Harvanova, Petra Havrankova, Ann-Kathrin Jaroszynski, Miriam Kolnikova, Robert Kopajtich, Anne Koy, Magdalena Krygier, Lukas Kunc, Katarina Kusikova, Oliver Maier, Maria Mazurkiewicz-Bełdzińska, Christian Mertes, Ava Oberlack, Timo Roser, Alexandra Sitzberger, Ugo Sorrentino, Antonia M Stehr, Katharina Vill, Matias Wagner, Holger Prokisch, Sylvia Boesch, Jan Necpal, Robert Jech, Juliane Winkelmann, Elisabeth Graf, Julien Gagneur, Matej Skorvanek, Michael Zech","doi":"10.1002/ana.78171","DOIUrl":"https://doi.org/10.1002/ana.78171","url":null,"abstract":"<p><strong>Objective: </strong>Genomic sequencing leaves >50% of dystonia-affected individuals without a diagnosis. Where DNA-oriented approaches remain insufficient, integrating multiomics is essential to advance genome interpretation. Herein, we incorporated RNA sequencing (RNA-seq) data from 167 patients with dystonia across a range of ages and presentations.</p><p><strong>Methods: </strong>We leveraged an RNA-seq analysis pipeline, focused on the identification of expression and splicing aberrations, on RNA-seq from skin biopsies. The recruited patients had early-onset dystonia in 85.0%, non-focal dystonia in 92.2%, and coexisting features in 76.0%. Thirty-six patient samples with pre-identified variants (36/167, 21.6%) and 131 samples with no previously prioritized diagnostic candidates from genomic sequencing (131/167, 78.4%) were evaluated.</p><p><strong>Results: </strong>We found that >80% of dystonia-associated genes were detected by fibroblast RNA-seq. Expression and splicing aberration analyses produced a manageable number of significant RNA defects affecting dystonia-associated genes. The approach was especially successful in validating pathogenic effects of loss-of-function variants, with disease-relevant RNA-underexpression detected for 66.7% (10/15). Studying aberrant expression and splicing in the context of other pre-identified variant types yielded relevant results in 28.6% (6/21 samples). We obtained a 6.9% (9/131) diagnostic uplift for patients without prior candidates, all of whom exhibited combined dystonia with autosomal recessive inheritance. The new diagnoses from RNA-seq and genomic reanalysis were based on previously neglected splice-region (3/9) and deep(er) intronic (6/9) variants. For the observed events, integration of new machine-learning scores predicted corresponding aberrant gene expression in the brain.</p><p><strong>Interpretation: </strong>Fibroblast-based RNA-seq in our selected cohort improved variant interpretation and offered a modest yield in patients without prior candidate variants. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146099922","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Christina Steffke MD, David Brenner MD, Alberto Catanese PhD
<p>With much appreciation, we read the letter to the editor by Khan and Khan<span><sup>1</sup></span> with respect to our manuscript describing the identification of therapy-responsive biomarkers in patients with SOD1-amyotrophic lateral sclerosis (ALS) treated with tofersen.<span><sup>2</sup></span> The authors surely highlight interesting aspects regarding the interpretation of our study.</p><p>First, the true origin of the pro-inflammatory proteins detected in the cerebrospinal fluid (CSF) samples 12 months after treatment initiation cannot be determined with ultimate certainty. As mentioned by Khan and Khan, the intrathecal application of the antisense oligonucleotide repetitively every 4 weeks is indeed leading to inflammatory signatures in the CSF, which in most cases remain clinically silent.<span><sup>3</sup></span> In fact, the patients and samples used for our study were partly included in the 12-month observation study from Wiesenfarth et al, hence basic CSF reports about cell count, protein, and oligoclonal bands were already investigated and described.<span><sup>3</sup></span> Although the involvement of microglia and neuronal inflammation is suggested to play an important role in the ALS pathogenesis,<span><sup>4, 5</sup></span> there is still no direct evidence of tofersen exerting a direct effect on the inflammatory response of patients. Thus, a combination of inflammatory reaction, due to the invasive treatment, and of disease progression (although slowed down by the treatment) is probably responsible for the increased pro-inflammatory response.</p><p>Second, the influence of sex hormones on the gender-dependent response of Aβ-peptides to the treatment with tofersen is a very important aspect. Unfortunately, at least for our patient cohort, we did not have information about hormone levels at the timepoint of sampling. Just by filtering the epidemiological data with regard to age at lumbar puncture, we could speculate whether the female patients were rather pre- or post-menopausal. There, we did not see any pattern of responder or non-responder female patients depending on the hypothetical menopausal state. Collecting anamnestic as well as analytical data in follow-up studies would definitely help gain more insight into the physiological sex-dependent response of Aβ-peptides to the treatment with tofersen.</p><p>Third, the role of neuronal pentraxins (NPTX1, NPTX2, and NPTXR) in neurodegenerative diseases has been significantly growing in the latest time. Not only are the proteins altered between patients with Alzheimer's disease and healthy controls,<span><sup>6</sup></span> but also seem to represent a proxy for neuroprotection in patients suffering from spinal muscular atrophy and treated with the antisense oligonucleotide Nusinersen.<span><sup>7</sup></span> In ALS, serum neuronal pentraxin 2 levels have been found to be associated with shorter survival.<span><sup>8</sup></span> Nevertheless, we have to point out that, in our
{"title":"Reply to “Extending the Interpretation of Biomarker Dynamics in SOD1-ALS Proteomics”","authors":"Christina Steffke MD, David Brenner MD, Alberto Catanese PhD","doi":"10.1002/ana.78090","DOIUrl":"10.1002/ana.78090","url":null,"abstract":"<p>With much appreciation, we read the letter to the editor by Khan and Khan<span><sup>1</sup></span> with respect to our manuscript describing the identification of therapy-responsive biomarkers in patients with SOD1-amyotrophic lateral sclerosis (ALS) treated with tofersen.<span><sup>2</sup></span> The authors surely highlight interesting aspects regarding the interpretation of our study.</p><p>First, the true origin of the pro-inflammatory proteins detected in the cerebrospinal fluid (CSF) samples 12 months after treatment initiation cannot be determined with ultimate certainty. As mentioned by Khan and Khan, the intrathecal application of the antisense oligonucleotide repetitively every 4 weeks is indeed leading to inflammatory signatures in the CSF, which in most cases remain clinically silent.<span><sup>3</sup></span> In fact, the patients and samples used for our study were partly included in the 12-month observation study from Wiesenfarth et al, hence basic CSF reports about cell count, protein, and oligoclonal bands were already investigated and described.<span><sup>3</sup></span> Although the involvement of microglia and neuronal inflammation is suggested to play an important role in the ALS pathogenesis,<span><sup>4, 5</sup></span> there is still no direct evidence of tofersen exerting a direct effect on the inflammatory response of patients. Thus, a combination of inflammatory reaction, due to the invasive treatment, and of disease progression (although slowed down by the treatment) is probably responsible for the increased pro-inflammatory response.</p><p>Second, the influence of sex hormones on the gender-dependent response of Aβ-peptides to the treatment with tofersen is a very important aspect. Unfortunately, at least for our patient cohort, we did not have information about hormone levels at the timepoint of sampling. Just by filtering the epidemiological data with regard to age at lumbar puncture, we could speculate whether the female patients were rather pre- or post-menopausal. There, we did not see any pattern of responder or non-responder female patients depending on the hypothetical menopausal state. Collecting anamnestic as well as analytical data in follow-up studies would definitely help gain more insight into the physiological sex-dependent response of Aβ-peptides to the treatment with tofersen.</p><p>Third, the role of neuronal pentraxins (NPTX1, NPTX2, and NPTXR) in neurodegenerative diseases has been significantly growing in the latest time. Not only are the proteins altered between patients with Alzheimer's disease and healthy controls,<span><sup>6</sup></span> but also seem to represent a proxy for neuroprotection in patients suffering from spinal muscular atrophy and treated with the antisense oligonucleotide Nusinersen.<span><sup>7</sup></span> In ALS, serum neuronal pentraxin 2 levels have been found to be associated with shorter survival.<span><sup>8</sup></span> Nevertheless, we have to point out that, in our ","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":"99 2","pages":"546-547"},"PeriodicalIF":7.7,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/ana.78090","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146091581","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Shubir Dutt, Dana Leichter, Yann Cobigo, Amy Wolf, John Kornak, Annie Clark, Lucy L Russell, Arabella Bouzigues, David M Cash, Martina Bocchetta, Molly Olzinski, Brian Appleby, Ece Bayram, Barbara Borroni, Andrea Bozoki, Chris R Butler, David Clark, Rhian S Convery, R Ryan Darby, Alexandre de Mendonça, Bradford Dickerson, Kimiko Domoto-Reilly, Simon Ducharme, Eve Ferry-Bolder, Elizabeth Finger, Phoebe H Foster, Douglas R Galasko, Daniela Galimberti, Alexander Gerhard, Nupur Ghoshal, Caroline Graff, Neill Graff-Radford, Ian M Grant, Chadwick M Hales, Lawrence S Honig, Ging-Yuek Hsiung, Edward D Huey, David Irwin, Lize C Jiskoot, Walter Kremers, Justin Y Kwan, Robert Laforce, Isabelle Le Ber, Gabriel C Léger, Johannes Levin, Irene Litvan, Ian R Mackenzie, Mario Masellis, Mario F Mendez, Fermin Moreno, Chiadi Onyike, Markus Otto, Belen Pascual, Peter Pressman, Rosa Rademakers, Eliana Marisa Ramos, Aaron Ritter, Erik D Roberson, James B Rowe, Raquel Sanchez-Valle, Isabel Santana, Harro Seelaar, Allison Snyder, Sandro Sorbi, Matthis Synofzik, Maria Carmela Tartaglia, Pietro Tiraboschi, John C van Swieten, Marijne Vandebergh, Rik Vandenberghe, Hilary W Heuer, Bruce L Miller, William W Seeley, Maria Luisa Gorno-Tempini, Joel H Kramer, Leah Forsberg, Kejal Kantarci, Bradley F Boeve, Adam L Boxer, Jonathan D Rohrer, Howard J Rosen, Adam M Staffaroni
Objective: Age of symptom onset is highly variable in familial frontotemporal lobar degeneration (f-FTLD). Accurate prediction of onset would inform clinical management and trial enrollment. Prior studies indicate that individualized maps of brain atrophy can predict conversion to dementia in f-FTLD. We used a Bayesian linear mixed-effect (BLME) prediction method for identifying accelerated brain volume loss to predict conversion to dementia.
Methods: Participants included 234 asymptomatic or prodromal carriers of C9orf72, GRN, or MAPT mutations (including 21 dementia converters) with ≥3 longitudinal magnetic resonance imaging (MRI) T1-weighted scans. The BLME models established individual voxel-wise gray matter trajectories using the first 2 scans. Person-specific clusters of accelerated volume loss were estimated in subsequent scans and tested as predictors of dementia conversion compared with other approaches in time-varying Cox proportional hazard models covarying for age. Receiver-operating characteristic (ROC) curves estimated utility of cluster volume in discriminating which participants converted to dementia within 24 months.
Results: The BLME cluster volume predicted conversion to dementia in f-FTLD mutation carriers overall and separately in C9orf72, GRN, and MAPT, with comparable hazard ratios observed for atrophy W-maps and regional volumes. Within a 24-month timeframe, BLME cluster volume discriminated dementia converters from non-converters with larger areas under the curve (AUCs) than other approaches.
Interpretation: Bayesian-modeled individualized atrophy scores predict dementia progression among asymptomatic f-FTLD mutation carriers and may have increased utility compared with other structural imaging methods when studying individuals over shorter timeframes that align with clinical trial design. ANN NEUROL 2026.
{"title":"Individualized Atrophy-Based Prediction of Dementia Progression in Familial Frontotemporal Lobar Degeneration With Bayesian Linear Mixed-Effects Modeling.","authors":"Shubir Dutt, Dana Leichter, Yann Cobigo, Amy Wolf, John Kornak, Annie Clark, Lucy L Russell, Arabella Bouzigues, David M Cash, Martina Bocchetta, Molly Olzinski, Brian Appleby, Ece Bayram, Barbara Borroni, Andrea Bozoki, Chris R Butler, David Clark, Rhian S Convery, R Ryan Darby, Alexandre de Mendonça, Bradford Dickerson, Kimiko Domoto-Reilly, Simon Ducharme, Eve Ferry-Bolder, Elizabeth Finger, Phoebe H Foster, Douglas R Galasko, Daniela Galimberti, Alexander Gerhard, Nupur Ghoshal, Caroline Graff, Neill Graff-Radford, Ian M Grant, Chadwick M Hales, Lawrence S Honig, Ging-Yuek Hsiung, Edward D Huey, David Irwin, Lize C Jiskoot, Walter Kremers, Justin Y Kwan, Robert Laforce, Isabelle Le Ber, Gabriel C Léger, Johannes Levin, Irene Litvan, Ian R Mackenzie, Mario Masellis, Mario F Mendez, Fermin Moreno, Chiadi Onyike, Markus Otto, Belen Pascual, Peter Pressman, Rosa Rademakers, Eliana Marisa Ramos, Aaron Ritter, Erik D Roberson, James B Rowe, Raquel Sanchez-Valle, Isabel Santana, Harro Seelaar, Allison Snyder, Sandro Sorbi, Matthis Synofzik, Maria Carmela Tartaglia, Pietro Tiraboschi, John C van Swieten, Marijne Vandebergh, Rik Vandenberghe, Hilary W Heuer, Bruce L Miller, William W Seeley, Maria Luisa Gorno-Tempini, Joel H Kramer, Leah Forsberg, Kejal Kantarci, Bradley F Boeve, Adam L Boxer, Jonathan D Rohrer, Howard J Rosen, Adam M Staffaroni","doi":"10.1002/ana.78167","DOIUrl":"10.1002/ana.78167","url":null,"abstract":"<p><strong>Objective: </strong>Age of symptom onset is highly variable in familial frontotemporal lobar degeneration (f-FTLD). Accurate prediction of onset would inform clinical management and trial enrollment. Prior studies indicate that individualized maps of brain atrophy can predict conversion to dementia in f-FTLD. We used a Bayesian linear mixed-effect (BLME) prediction method for identifying accelerated brain volume loss to predict conversion to dementia.</p><p><strong>Methods: </strong>Participants included 234 asymptomatic or prodromal carriers of C9orf72, GRN, or MAPT mutations (including 21 dementia converters) with ≥3 longitudinal magnetic resonance imaging (MRI) T1-weighted scans. The BLME models established individual voxel-wise gray matter trajectories using the first 2 scans. Person-specific clusters of accelerated volume loss were estimated in subsequent scans and tested as predictors of dementia conversion compared with other approaches in time-varying Cox proportional hazard models covarying for age. Receiver-operating characteristic (ROC) curves estimated utility of cluster volume in discriminating which participants converted to dementia within 24 months.</p><p><strong>Results: </strong>The BLME cluster volume predicted conversion to dementia in f-FTLD mutation carriers overall and separately in C9orf72, GRN, and MAPT, with comparable hazard ratios observed for atrophy W-maps and regional volumes. Within a 24-month timeframe, BLME cluster volume discriminated dementia converters from non-converters with larger areas under the curve (AUCs) than other approaches.</p><p><strong>Interpretation: </strong>Bayesian-modeled individualized atrophy scores predict dementia progression among asymptomatic f-FTLD mutation carriers and may have increased utility compared with other structural imaging methods when studying individuals over shorter timeframes that align with clinical trial design. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-01-29","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12950279/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"147321012","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Mohamed F Doheim, Mahmoud H Mohammaden, Hend Abdelhamid, Marta Olive-Gadea, Marc Rodrigo-Gisbert, Manuel Requena, Johanna T Fifi, James E Siegler, Santiago Ortega-Gutierrez, Mohamad Abdalkader, Ali Alaraj, Wei Hu, Thanh N Nguyen, Diogo C Haussen, Raul G Nogueira
Objective: The optimal treatment for distal medium vessel occlusion (DMVO) stroke remains uncertain, and evidence comparing endovascular therapy (EVT) with medical management (MM) is limited. We aimed to develop and validate a predictive modeling tool to assess individual treatment benefit in DMVO stroke using explainable counterfactual treatment estimation.
Methods: Adults with isolated DMVO stroke (M3-M4, A2-A3, or P1-P2) were retrospectively identified from 7 stroke centers. To estimate individualized probabilities of favorable outcome (modified Rankin Scale [mRS] = 0-2 at 90 days), we developed a Penalized Logistic Regression (Elastic Net) model. This framework was selected a priori over other explored machine learning algorithms (Decision Tree, Support Vector Classifier, and XGBoost) for its superior interpretability and ability to handle multicollinearity among interaction terms. Inverse Probability of Treatment Weighting (IPTW) was implemented to address confounding by indication in the observational data. Internal validation used repeated K-fold cross-validation and bootstrapping; external validation was performed on an independent cohort (n = 86).
Results: Of 321 eligible patients, 179 received EVT (55.8%) and 142 received MM (44.2%). Adjusted models showed no significant overall group differences in favorable outcome (adjusted OR [aOR] = 1.32, 95% confidence interval [CI] = 0.97-1.80), mortality (aOR = 1.20, 95% CI = 0.78-1.85), or symptomatic hemorrhage (aOR = 0.57, 95% CI = 0.21-1.58). However, the model identified significant treatment effect heterogeneity; EVT benefit was amplified in patients with higher National Institutes of Health Stroke Scale (NIHSS) and attenuated with increasing treatment delay. Internal validation demonstrated strong performance (area under the receiver operating characteristic curve [AUC] = 0.77, 95% CI = 0.71-0.82). External validation confirmed generalizability (AUC = 0.74, 95% CI = 0.63-0.84). Individualized treatment estimates showed high concordance with a benchmark causal T-Learner model (Pearson r = 0.97 internal and r = 0.98 external).
Interpretation: Although aggregate outcomes did not differ significantly, the validated Distal and Medium Vessel Occlusion Stroke (DUSK) Tool enables individualized estimation of EVT benefit in DMVO stroke. This explainable counterfactual treatment estimation framework supports precision decision making by identifying specific patient subgroups most likely to benefit from EVT over MM. ANN NEUROL 2026.
目的:远端中血管闭塞(DMVO)卒中的最佳治疗方法尚不确定,并且比较血管内治疗(EVT)与医学治疗(MM)的证据有限。我们的目的是开发和验证一种预测建模工具,使用可解释的反事实治疗估计来评估DMVO卒中的个体治疗效果。方法:回顾性分析来自7个卒中中心的孤立性DMVO卒中成人(M3-M4、A2-A3或P1-P2)。为了估计个体化有利结果的概率(修改Rankin量表[mRS]在90天= 0-2),我们开发了一个惩罚逻辑回归(Elastic Net)模型。该框架在其他探索的机器学习算法(决策树、支持向量分类器和XGBoost)中被先验地选择,因为它具有优越的可解释性和处理交互项之间多重共线性的能力。采用治疗加权逆概率(IPTW)来解决观测数据中指征引起的混淆。内部验证采用重复K-fold交叉验证和自举;在独立队列(n = 86)中进行外部验证。结果:321例患者中,EVT治疗179例(55.8%),MM治疗142例(44.2%)。调整后的模型显示,在有利结局(调整后的OR [aOR] = 1.32, 95%可信区间[CI] = 0.97-1.80)、死亡率(aOR = 1.20, 95% CI = 0.78-1.85)或症状性出血(aOR = 0.57, 95% CI = 0.21-1.58)方面,组间无显著差异。然而,该模型发现了显著的治疗效果异质性;EVT的益处在美国国立卫生研究院卒中量表(NIHSS)较高的患者中被放大,并随着治疗延迟的增加而减弱。内部验证显示了良好的性能(受试者工作特征曲线下面积[AUC] = 0.77, 95% CI = 0.71-0.82)。外部验证证实了可推广性(AUC = 0.74, 95% CI = 0.63-0.84)。个性化治疗估计与基准因果t -学习者模型高度一致(内部Pearson r = 0.97,外部r = 0.98)。解释:虽然总体结果没有显著差异,但经过验证的远端和中端血管闭塞卒中(DUSK)工具可以对DMVO卒中中EVT的益处进行个性化估计。这种可解释的反事实治疗评估框架通过识别最有可能从EVT中受益的特定患者亚组来支持精确决策。
{"title":"Individualized Treatment in Distal and Medium Vessel Occlusion Stroke Using a Validated Explainable Counterfactual Treatment Estimation Model.","authors":"Mohamed F Doheim, Mahmoud H Mohammaden, Hend Abdelhamid, Marta Olive-Gadea, Marc Rodrigo-Gisbert, Manuel Requena, Johanna T Fifi, James E Siegler, Santiago Ortega-Gutierrez, Mohamad Abdalkader, Ali Alaraj, Wei Hu, Thanh N Nguyen, Diogo C Haussen, Raul G Nogueira","doi":"10.1002/ana.78168","DOIUrl":"https://doi.org/10.1002/ana.78168","url":null,"abstract":"<p><strong>Objective: </strong>The optimal treatment for distal medium vessel occlusion (DMVO) stroke remains uncertain, and evidence comparing endovascular therapy (EVT) with medical management (MM) is limited. We aimed to develop and validate a predictive modeling tool to assess individual treatment benefit in DMVO stroke using explainable counterfactual treatment estimation.</p><p><strong>Methods: </strong>Adults with isolated DMVO stroke (M3-M4, A2-A3, or P1-P2) were retrospectively identified from 7 stroke centers. To estimate individualized probabilities of favorable outcome (modified Rankin Scale [mRS] = 0-2 at 90 days), we developed a Penalized Logistic Regression (Elastic Net) model. This framework was selected a priori over other explored machine learning algorithms (Decision Tree, Support Vector Classifier, and XGBoost) for its superior interpretability and ability to handle multicollinearity among interaction terms. Inverse Probability of Treatment Weighting (IPTW) was implemented to address confounding by indication in the observational data. Internal validation used repeated K-fold cross-validation and bootstrapping; external validation was performed on an independent cohort (n = 86).</p><p><strong>Results: </strong>Of 321 eligible patients, 179 received EVT (55.8%) and 142 received MM (44.2%). Adjusted models showed no significant overall group differences in favorable outcome (adjusted OR [aOR] = 1.32, 95% confidence interval [CI] = 0.97-1.80), mortality (aOR = 1.20, 95% CI = 0.78-1.85), or symptomatic hemorrhage (aOR = 0.57, 95% CI = 0.21-1.58). However, the model identified significant treatment effect heterogeneity; EVT benefit was amplified in patients with higher National Institutes of Health Stroke Scale (NIHSS) and attenuated with increasing treatment delay. Internal validation demonstrated strong performance (area under the receiver operating characteristic curve [AUC] = 0.77, 95% CI = 0.71-0.82). External validation confirmed generalizability (AUC = 0.74, 95% CI = 0.63-0.84). Individualized treatment estimates showed high concordance with a benchmark causal T-Learner model (Pearson r = 0.97 internal and r = 0.98 external).</p><p><strong>Interpretation: </strong>Although aggregate outcomes did not differ significantly, the validated Distal and Medium Vessel Occlusion Stroke (DUSK) Tool enables individualized estimation of EVT benefit in DMVO stroke. This explainable counterfactual treatment estimation framework supports precision decision making by identifying specific patient subgroups most likely to benefit from EVT over MM. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-01-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146058357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Haley E Pysick, Rup K Sainju, Roshni Nair, Deidre N Dragon, Eduardo Bravo, Laura Vilella, Xiaojin Li, Samden D Lhatoo, George B Richerson, Brian K Gehlbach
Objective: Sudden unexpected death in epilepsy (SUDEP) is a devastating consequence of some generalized convulsive seizures (GCS). Recent work has focused on seizure related apnea as a biomarker of SUDEP risk, frequently without characterizing the adequacy of non-apneic ventilation or identifying other dysfunctional breathing patterns. We hypothesized that GCS frequently induce immediate, severe, non-apneic respiratory dysfunction that can induce critical hypoxia and bradycardia and sought to characterize breathing patterns after GCS.
Methods: Adult patients admitted to an epilepsy monitoring unit were studied. The effects of GCS on breathing and heart rate were analyzed using nasal pressure transducers, chest and abdominal respiratory inductance plethysmography, capillary oxygen saturation, transcutaneous CO2, electrocardiogram, electroencephalogram, and expert audiovisual analysis. Correlation analyses, the Mann-Whitney test, and an unpaired t test were used to analyze relationships between dysfunctional breathing patterns and both the severity of postictal hypoxemia and the heart rate.
Results: Thirty-two GCS from 22 patients were analyzed and 31 exhibited 1 or more of the following breathing patterns: disordered rhythmicity (n = 28/32, 87.5%), shallow breathing (n = 12/32, 37.5%), thoracoabdominal asynchrony (n = 24/30, 80.0%), and upper airway obstruction (n = 30/32, 93.8%). Oxygen desaturation was more severe when postictal breathing was shallow or irregular in amplitude. The latter was associated with absolute or relative bradycardia.
Interpretation: Nonfatal GCS frequently induce immediate, severe, non-apneic respiratory dysfunction temporally associated with severe hypoxia and bradycardia. Our study suggests that postictal respiratory and cardiac function are tightly coupled and highlights the importance of including all the relevant pathologic variables in studies of SUDEP pathogenesis. ANN NEUROL 2026.
{"title":"Severe, Non-apneic Respiratory Dysfunction and Hypoxia following Generalized Convulsive Seizures.","authors":"Haley E Pysick, Rup K Sainju, Roshni Nair, Deidre N Dragon, Eduardo Bravo, Laura Vilella, Xiaojin Li, Samden D Lhatoo, George B Richerson, Brian K Gehlbach","doi":"10.1002/ana.78164","DOIUrl":"10.1002/ana.78164","url":null,"abstract":"<p><strong>Objective: </strong>Sudden unexpected death in epilepsy (SUDEP) is a devastating consequence of some generalized convulsive seizures (GCS). Recent work has focused on seizure related apnea as a biomarker of SUDEP risk, frequently without characterizing the adequacy of non-apneic ventilation or identifying other dysfunctional breathing patterns. We hypothesized that GCS frequently induce immediate, severe, non-apneic respiratory dysfunction that can induce critical hypoxia and bradycardia and sought to characterize breathing patterns after GCS.</p><p><strong>Methods: </strong>Adult patients admitted to an epilepsy monitoring unit were studied. The effects of GCS on breathing and heart rate were analyzed using nasal pressure transducers, chest and abdominal respiratory inductance plethysmography, capillary oxygen saturation, transcutaneous CO<sub>2</sub>, electrocardiogram, electroencephalogram, and expert audiovisual analysis. Correlation analyses, the Mann-Whitney test, and an unpaired t test were used to analyze relationships between dysfunctional breathing patterns and both the severity of postictal hypoxemia and the heart rate.</p><p><strong>Results: </strong>Thirty-two GCS from 22 patients were analyzed and 31 exhibited 1 or more of the following breathing patterns: disordered rhythmicity (n = 28/32, 87.5%), shallow breathing (n = 12/32, 37.5%), thoracoabdominal asynchrony (n = 24/30, 80.0%), and upper airway obstruction (n = 30/32, 93.8%). Oxygen desaturation was more severe when postictal breathing was shallow or irregular in amplitude. The latter was associated with absolute or relative bradycardia.</p><p><strong>Interpretation: </strong>Nonfatal GCS frequently induce immediate, severe, non-apneic respiratory dysfunction temporally associated with severe hypoxia and bradycardia. Our study suggests that postictal respiratory and cardiac function are tightly coupled and highlights the importance of including all the relevant pathologic variables in studies of SUDEP pathogenesis. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-01-27","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12885573/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146049614","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Jennifer Myskiw, Rebecca Fox, Dominic M S Kielich, Lise Lamoureux, Melanie Leonhardt, Olivia Nykvist, Jessy A Slota, Kristen Avery, Clark Phillipson, Kathy Frost, Sharon Simon, Brian S Appleby, Ben A Bailey-Elkin, Stephanie A Booth
Objective: Quaking-induced conversion (QuIC) tests, which detect prion-seeding activity in cerebrospinal fluid (CSF), have markedly advanced the antemortem diagnosis of prion diseases such as Creutzfeldt-Jakob disease (CJD). These tests provide high diagnostic accuracy and enable timely differentiation from other rapidly progressive neurodegenerative disorders. However, a key limitation of current QuIC tests are the reduced sensitivity in detecting inherited prion diseases and rare sporadic subtypes, including variably protease-sensitive prionopathy (VPSPr). To address this gap, we evaluated a simplified QuIC test, end-point QuIC (EP-QuIC), incorporating a novel recombinant prion protein substrate derived from the North American deer mouse (Peromyscus maniculatus).
Methods: The diagnostic performance of the modified QuIC test was evaluated using CSF samples from 61 sporadic CJD, 50 inherited prion disease, and 5 VPSPr cases.
Results: EP-QuIC with the deer mouse substrate achieved 96.6% sensitivity (111/116) and 100% specificity (35/35), outperforming both standard EP-QuIC (87.1%) and next-generation (IQ-CSF) real-time-QuIC (72.4%) across the same cohort. Notably, this enhanced assay detected inherited mutations, such as D178N, that were previously undetectable with existing diagnostic tests.
Interpretation: These findings demonstrate that adapting EP-QuIC with an optimized substrate, termed enhanced sensitivity QuIC (ES-QuIC), significantly improves diagnostic performance for inherited and atypical prion diseases. By expanding the diagnostic reach of QuIC tests, this study strengthens antemortem surveillance, reduces reliance on postmortem confirmation, and improves opportunities for early intervention and clinical trial enrollment, particularly for genetic cases most likely to benefit from emerging therapeutic strategies. ANN NEUROL 2026.
{"title":"Enhanced Sensitivity of a Modified Quaking-Induced Conversion Diagnostic Test for the Broad Detection of Sporadic and Inherited Prion Diseases: A Retrospective Study.","authors":"Jennifer Myskiw, Rebecca Fox, Dominic M S Kielich, Lise Lamoureux, Melanie Leonhardt, Olivia Nykvist, Jessy A Slota, Kristen Avery, Clark Phillipson, Kathy Frost, Sharon Simon, Brian S Appleby, Ben A Bailey-Elkin, Stephanie A Booth","doi":"10.1002/ana.78162","DOIUrl":"https://doi.org/10.1002/ana.78162","url":null,"abstract":"<p><strong>Objective: </strong>Quaking-induced conversion (QuIC) tests, which detect prion-seeding activity in cerebrospinal fluid (CSF), have markedly advanced the antemortem diagnosis of prion diseases such as Creutzfeldt-Jakob disease (CJD). These tests provide high diagnostic accuracy and enable timely differentiation from other rapidly progressive neurodegenerative disorders. However, a key limitation of current QuIC tests are the reduced sensitivity in detecting inherited prion diseases and rare sporadic subtypes, including variably protease-sensitive prionopathy (VPSPr). To address this gap, we evaluated a simplified QuIC test, end-point QuIC (EP-QuIC), incorporating a novel recombinant prion protein substrate derived from the North American deer mouse (Peromyscus maniculatus).</p><p><strong>Methods: </strong>The diagnostic performance of the modified QuIC test was evaluated using CSF samples from 61 sporadic CJD, 50 inherited prion disease, and 5 VPSPr cases.</p><p><strong>Results: </strong>EP-QuIC with the deer mouse substrate achieved 96.6% sensitivity (111/116) and 100% specificity (35/35), outperforming both standard EP-QuIC (87.1%) and next-generation (IQ-CSF) real-time-QuIC (72.4%) across the same cohort. Notably, this enhanced assay detected inherited mutations, such as D178N, that were previously undetectable with existing diagnostic tests.</p><p><strong>Interpretation: </strong>These findings demonstrate that adapting EP-QuIC with an optimized substrate, termed enhanced sensitivity QuIC (ES-QuIC), significantly improves diagnostic performance for inherited and atypical prion diseases. By expanding the diagnostic reach of QuIC tests, this study strengthens antemortem surveillance, reduces reliance on postmortem confirmation, and improves opportunities for early intervention and clinical trial enrollment, particularly for genetic cases most likely to benefit from emerging therapeutic strategies. ANN NEUROL 2026.</p>","PeriodicalId":127,"journal":{"name":"Annals of Neurology","volume":" ","pages":""},"PeriodicalIF":7.7,"publicationDate":"2026-01-26","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146045772","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}