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Beta Globin Gene Cluster Haplotypes in Beta Thalassemia in the Kurdistan Region of Iraq. 伊拉克库尔德斯坦地区β -地中海贫血的β -珠蛋白基因簇单倍型研究
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-05-01 DOI: 10.1080/03630269.2023.2235278
Shaima Al-Zebari, Nasir As Al-Allawi, Farida Nerweyi

β-thalassemia is a prevalent inherited red cell disorder in the Kurdistan region of Iraq. To determine the chromosomal background of the frequent β-thalassemia mutations in the latter region, we investigated the β-globin gene cluster haplotypes in 202 β-thalassemia chromosomes. Haplotypes analysis utilized restriction fragment length polymorphism-PCR of seven restriction sites through the β-globin gene cluster. It was observed that IVS-II-1 (G > A) was mainly associated with haplotype III (68.8%), IVS-1-110 (G > A), codon 8/9 (+G) and codon 44 (-C) with haplotype I (in 90.0%, 100%, and 62.5% respectively), IVS-1-6 (T > C) with haplotype VI (97.4%), codon 8 (-AA) with haplotype IV (75%), codon 5(-CT) and IVS1.1 (G > A) with haplotype V (55.6% and 58.3% respectively), while codon 39 (C > T) and IVS1.5 (G > C) were mainly associated with haplotype VII (85.7% and 75% respectively). These observations support the notion that while some mutations may have originated in the Kurdistan region, others were more likely brought in by gene flow from neighboring countries or the Indian subcontinent. The association of some β-thalassemia defects with more than one haplotype may be due to mutations or recombination events.

β-地中海贫血是伊拉克库尔德斯坦地区普遍存在的遗传性红细胞疾病。为了确定后一区域β-地中海贫血频繁突变的染色体背景,我们对202条β-地中海贫血染色体的β-珠蛋白基因簇单倍型进行了研究。单倍型分析采用限制性内切片段长度多态性- pcr,通过β-珠蛋白基因簇对7个限制性内切位点进行分析。是观察IVS-II-1 (G >)主要是与单体型第三(68.8%),静脉注射- 1 - 110 (G >),密码子8/9 (+ G)和密码子44 (- C)和单体型我(分别为90.0%,100%,和62.5%),IVS-1-6 (T > C)和单体型VI(97.4%)、密码子8 (aa)和单体型静脉(75%)、密码子5 (- ct)和IVS1.1 V (G >)和单体型(分别为55.6%和58.3%),而密码子39 (C > T)和IVS1.5 (G > C)主要是与单体型七世(分别为85.7%和75%)。这些观察结果支持了这样一种观点,即虽然一些突变可能起源于库尔德斯坦地区,但其他突变更有可能是由邻国或印度次大陆的基因流带来的。一些β-地中海贫血缺陷与一个以上单倍型的关联可能是由于突变或重组事件。
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引用次数: 0
Mutation Spectrum of β-Thalassemia in Some Ethnic Groups of North Maharashtra, India. 印度马哈拉施特拉邦北部某些族群β-地中海贫血的突变谱
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-05-01 DOI: 10.1080/03630269.2023.2212911
Ranjeet Kumar, Syed Abrar Ahmad, Mustafa Ozdemir, Sakthivel Sadayappan, Varsha Wankhade

Beta-thalassemia is the most common inherited single-gene disorder in the world, caused by more than 200 known mutations in the HBB gene. In India, the average prevalence of β-thalassemia carriers is 3-4%. Several ethnic groups have a much higher prevalence, about 8% in the tribal groups, according to the 2011 census. The study's main goal is to identify common β-thalassemia mutations and the frequencies of different haplotypes in various communities in North Maharashtra. Nashik district had the highest prevalence of β-thalassemia (34%), followed by Ahmednagar (29%), Jalgaon (16%), Dhule (14%), and Nandurbar (7.0%). Prevalence of β-thalassemia was highest in the schedule caste community (SC) (48%), followed by (17%) in Muslims, (14%) in other backward classes (OBC), (13%) in Schedule Tribe (ST), and (8.0%) in the general population The six most common β-thalassemia mutations detected in this study are IVS 1 > 5 (G→C), Cd 15(G→A), Cd 41/41 (-TCTT), Cd 8/9(+G), IVS 1 > 1(G→T) and Cap + 1(A > G). Among these mutations, IVS 1 > 5 (G > C) was the most common type of mutation found in β-thalassemia patients in the North Maharashtra population. Type-I haplotype was the most prevalent among all communities. Nashik and Ahmednagar districts were highly affected by β-thalassemia. Among different ethnic groups, the SC and Muslim communities were the worst affected with a higher proportion of β-thalassemia and increased frequency of mutations.

地中海贫血是世界上最常见的遗传性单基因疾病,由200多种已知的HBB基因突变引起。在印度,β-地中海贫血携带者的平均患病率为3-4%。根据2011年的人口普查,一些少数民族的患病率要高得多,在部落群体中约占8%。该研究的主要目标是确定北马哈拉施特拉邦不同社区中常见的β-地中海贫血突变和不同单倍型的频率。纳西克区β-地中海贫血患病率最高(34%),其次是艾哈迈德纳格尔(29%)、贾尔冈(16%)、杜勒(14%)和楠都巴尔(7.0%)。β-地中海贫血患病率最高的是表种姓社区(SC)(48%),其次是穆斯林(17%),其他落后阶层(OBC)(14%),表部落(ST)(13%),一般人群(8.0%)。本研究中检测到的6种最常见的β-地中海贫血突变为IVS 1 > 5(G→C), Cd 15(G→A), Cd 41/41 (-TCTT), Cd 8/9(+G), IVS 1 > 1(G→T)和Cap + 1(A > G)。在这些突变中,IVS 1 > 5 (G > C)是北马哈拉施特拉邦人群中β-地中海贫血患者中最常见的突变类型。1型单倍型在各群落中最普遍。纳西克和艾哈迈德纳加尔地区受到β-地中海贫血的严重影响。在不同的种族群体中,SC和穆斯林社区受影响最严重,β-地中海贫血比例更高,突变频率更高。
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引用次数: 0
Detection of a Rare Mutation in the Initiation Codon of the β-Globin Gene (HBB:C.2T > C; P.Met1Thr). β-珠蛋白基因起始密码子罕见突变(HBB:C. 2t > C)的检测P.Met1Thr)。
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-05-01 DOI: 10.1080/03630269.2023.2240708
Rawand Shamoon, Ahmed Yassin, Amir Charkaneh
Abstract β-thalassemia is one of the most common inherited autosomal disorders in the northern Iraqi Kurdistan region. This study reports a rare mutation in the initiation codon of the β-globin gene (HBB: c.2T > C; p.Met1Thr) in an 11-year-old male with severe transfusion-dependent β-thalassemia. Molecular testing to uncover the mutations of the β-globin gene in the proband and his parents was performed by amplification and reverse hybridization. Sanger sequencing was conducted for further identification. A severe β-globin gene mutation in codon 8/9 [+G] was initially identified in the proband and his mother’s DNA samples. However, the detection of only one β-globin gene mutation was not enough to elucidate the patient’s severe phenotype. Thus, a rare mutation in the initiation codon was identified later in the proband and his father by Sanger sequencing. In thalassemias, the presence of a rare mutation should be suspected when the patient’s genotype does not correlate with the phenotype.
β-地中海贫血是伊拉克北部库尔德斯坦地区最常见的遗传性常染色体疾病之一。本研究报道了一种罕见的β-珠蛋白基因起始密码子突变(HBB: C . 2t > C;1例患有严重输血依赖性β-地中海贫血的11岁男性。先证者及其父母β-珠蛋白基因突变的分子检测方法为扩增和反向杂交。进行Sanger测序进一步鉴定。首先在先证者及其母亲的DNA样本中发现密码子8/9 [+G]严重的β-珠蛋白基因突变。然而,仅检测一个β-珠蛋白基因突变不足以阐明患者的严重表型。因此,后来在先证者和他的父亲通过桑格测序鉴定了一个罕见的起始密码子突变。在地中海贫血中,当患者的基因型与表型不相关时,应怀疑存在罕见突变。
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引用次数: 0
α- and β-Globin Gene Mutations in Individuals with Hemoglobinopathies in the Chattogram and Sylhet Regions of Bangladesh. 孟加拉国Chattogram和Sylhet地区血红蛋白病患者的α-和β-珠蛋白基因突变
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/03630269.2023.2166526
Tamanna Kabir, Saeed Anwar, Jarin Taslem Mourosi, Shanjida Akter, Mohammad Jakir Hosen

Hemoglobinopathies, including α- and β-thalassemias and sickle cell disease, are among the most widely disseminated hereditary blood disorders worldwide. Bangladesh is considered a hotspot for hemoglobinopathies, and these diseases cause a significant health concern in the country. However, the country has a dearth of knowledge on the molecular etiology and carrier frequency of thalassemias, primarily due to a lack of diagnostic facilities, limited access to information, and the absence of efficient screening programs. This study sought to investigate the spectrum of mutations underlying hemoglobinopathies in Bangladesh. We developed a set of polymerase chain reaction (PCR)-based techniques to detect mutations in α- and β-globin genes. We recruited 63 index subjects with previously diagnosed thalassemia. Along with age- and sex-matched control subjects, we assessed several hematological and serum indices and genotyped them using our PCR-based methods. We identified that parental consanguinity was associated with the occurrence of these hemoglobinopathies. Our PCR-based genotyping assays identified 23 HBB genotypes, with the codons 41/42 (-TTCT) (HBB: c.126_129delCTTT) mutation leading the spectrum. We also observed the presence of cooccurring HBA conditions, of which the participants were not aware. All index participants in this study were on iron chelation therapies, yet we found they had very high serum ferritin (SF) levels, indicating inefficient management of the individuals undergoing such treatments. Overall, this study provides essential information on the hemoglobinopathy mutation spectrum in Bangladesh and highlights the need for nationwide screening programs and an integrated policy for diagnosing and managing individuals with hemoglobinopathies.

血红蛋白病,包括α-和β-地中海贫血和镰状细胞病,是全世界传播最广泛的遗传性血液疾病之一。孟加拉国被认为是血红蛋白病的热点地区,这些疾病在该国引起了重大的健康问题。然而,该国缺乏关于地中海贫血分子病因学和携带者频率的知识,这主要是由于缺乏诊断设施、获取信息的机会有限以及缺乏有效的筛查规划。本研究旨在调查孟加拉国血红蛋白病的突变谱。我们开发了一套基于聚合酶链反应(PCR)的技术来检测α-和β-珠蛋白基因的突变。我们招募了63名先前诊断为地中海贫血的指标受试者。与年龄和性别匹配的对照受试者一起,我们评估了几种血液学和血清指标,并使用基于pcr的方法对他们进行了基因分型。我们发现亲本血缘关系与这些血红蛋白病的发生有关。我们基于pcr的基因分型分析鉴定出23种HBB基因型,以密码子41/42 (-TTCT) (HBB: c.126_129delCTTT)突变为主要基因型。我们还观察到存在共同发生的HBA条件,其中参与者不知道。本研究的所有指数参与者均接受铁螯合治疗,但我们发现他们的血清铁蛋白(SF)水平非常高,表明接受此类治疗的个体管理效率低下。总的来说,这项研究提供了关于孟加拉国血红蛋白病突变谱的基本信息,并强调了在全国范围内开展筛查计划和制定诊断和管理血红蛋白病患者的综合政策的必要性。
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引用次数: 0
Editorial. 社论。
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/03630269.2023.2179795
Adekunle D Adekile
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引用次数: 0
Novel Promoter Mutation (HBB:C.-139_-138del) Associated with β-Thalassemia Trait Detected by Next-Generation Sequencing in Southern China. 新一代测序检测中国南方地区β-地中海贫血相关启动子突变(HBB: c - 139_138del)
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/03630269.2023.2182215
Lei Pan, Peirun Tian, Shiping Chen, Rui Zhang

Here we report a novel β-globin gene mutation in the promoter (HBB:c.-139_-138delAC) detected by next-generation sequencing (NGS). The proband was a 28-year-old Chinese male, living in Shenzhen City, Guangdong Province, who originates from Hunan Province. The red cell indices were almost normal, with a slightly decreased Red Cell volume Distribution Width(RDW). Capillary electrophoresis (CE) showed the Hb A (93.1%) value was below normal, while the Hb A2 (4.2%) and Hb F (2.7%) values were both beyond normal. A set of genetic tests of the α and β-globin genes were then performed to determine whether the subject carried any causative mutations. The results of NGS revealed a two-base pair deletion at position -89 to -88(HBB:c.-139_-138delAC)in the heterozygous state, which was subsequently confirmed by Sanger sequencing.

在这里,我们报告了通过下一代测序(NGS)检测到的启动子(HBB:c - 139_138delac)中新的β-珠蛋白基因突变。先证者是一名28岁的中国男性,居住在广东省深圳市,原籍湖南省。红细胞指数基本正常,红细胞体积分布宽度(RDW)略有下降。毛细管电泳(CE)显示Hb A(93.1%)值低于正常,Hb A2(4.2%)和Hb F(2.7%)值均高于正常。然后进行α和β珠蛋白基因的一组基因测试,以确定受试者是否携带任何致病突变。NGS结果显示,在杂合状态下-89 ~ -88位有两个碱基对缺失(HBB:c - 139_138delac),随后通过Sanger测序证实了这一点。
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引用次数: 0
Effect of α+ Thalassemia on the Severity of Plasmodium falciparum Malaria in Different Sickle Cell Genotypes in Indian Adults: A Hospital-Based Study. α+地中海贫血对印度成人不同镰状细胞基因型恶性疟原虫疟疾严重程度的影响:一项基于医院的研究
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/03630269.2023.2168201
Prasanta Purohit, Pradeep Kumar Mohanty, Jogeswar Panigrahi, Kishalaya Das, Siris Patel

There is a paucity of literature on the association of α+-thalassemia, sickle-cell hemoglobin disorders, and malaria in India. This study aimed to understand the effect of α+-thalassemia on the severity of Plasmodium falciparum malaria in adults with respect to sickle-cell genotypes. The study subjects were categorized into 'severe-malaria' and 'uncomplicated-malaria' and age-gender matched 'control' groups. Sickle-cell and α+-thalassemia were investigated in all the recruited subjects. The effect of α+-thalassemia on the severity of malaria was analyzed in HbAA and sickle-cell genotypes (HbAS and HbSS) separately. The prevalence of α+-thalassemia in various groups ranged from 41.5% to 81.8%. The prevalence of α+-thalassemia was lower (OR = 1.64; p = 0.0013) in severe malaria (41.5%) as compared to healthy controls (53.8%) with HbAA genotype. In contrast, in HbAS genotype, the prevalence of α+-thalassemia was higher (OR = 4.11; p = 0.0002) in severe malaria (81.8%) compared to controls (52.2%). In severe malaria with HbAA genotype, there was a significantly higher hemoglobin level and low MCV and MCH level in patients with α+-thalassemia compared to the normal α-globin genotype. Further, the incidence of cerebral malaria, hepatopathy, and mortality was lower in patients (HbAA) with α+-thalassemia as compared to normal α-globin genotype (HbAA). In severe malaria with either HbAS or HbSS genotype, only a few parameters showed statistical differences with respect to α+-thalassemia. Low prevalence of α+-thalassemia in severe malaria with HbAA genotype compared to healthy controls with HbAA genotype indicates the protective effect of α+-thalassemia against severe malaria. However, the high prevalence of α+-thalassemia in patients with HbAS genotype depicts its interference in the protective effect of sickle-cell against severe malaria.

在印度,关于α+-地中海贫血、镰状细胞血红蛋白疾病和疟疾的文献很少。本研究旨在了解α+-地中海贫血对镰状细胞基因型成人恶性疟原虫疟疾严重程度的影响。研究对象被分为“严重疟疾”和“简单疟疾”两组,以及年龄性别匹配的“对照组”。在所有招募的受试者中调查镰状细胞和α+-地中海贫血。在HbAA基因型和镰状细胞基因型(HbAS和HbSS)中分别分析α+-地中海贫血对疟疾严重程度的影响。α+-地中海贫血在不同人群中的患病率为41.5% ~ 81.8%。α+-地中海贫血患病率较低(OR = 1.64;p = 0.0013),与HbAA基因型的健康对照(53.8%)相比,严重疟疾(41.5%)。相反,在HbAS基因型中,α+-地中海贫血的患病率更高(OR = 4.11;P = 0.0002),重症疟疾患病率为81.8%,而对照组为52.2%。在HbAA基因型重症疟疾患者中,α+-地中海贫血患者血红蛋白水平明显高于α-珠蛋白正常基因型患者,MCV和MCH水平明显低于α+-珠蛋白正常基因型患者。此外,与正常α-珠蛋白基因型(HbAA)相比,α+-地中海贫血患者(HbAA)的脑型疟疾、肝病和死亡率较低。在HbAS或HbSS基因型的严重疟疾中,只有少数参数与α+-地中海贫血有统计学差异。与HbAA基因型的健康对照相比,HbAA基因型的严重疟疾患者α+-地中海贫血的患病率较低,这表明α+-地中海贫血对严重疟疾有保护作用。然而,HbAS基因型患者中α+-地中海贫血的高患病率表明其干扰了镰状细胞对严重疟疾的保护作用。
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引用次数: 1
Editorial 社论
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1007/s11654-023-00491-y
A. Adekile
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引用次数: 0
Fist Detection of Hb Suqian[β42(CD1) Phe→Leu, HBB:c.129T > A] in Han Chinese. 首次检测宿迁Hb [β42(CD1) Phe→Leu, HBB:c。[9t] [A]。
IF 1 4区 医学 Q3 Medicine Pub Date : 2023-01-01 DOI: 10.1080/03630269.2023.2167658
Wenjuan Wang, Zixuan Ding, Airui Jiang, Suning Chen, Huanju Han

We have identified a variant on the β-globin gene in a Chinese female. Sequencing of the HBB gene revealed a Phe→Leu substitution at codon 42[β42(CD1) Phe→Leu, HBB:c.129T > A] which has been named Hb Suqian for where the proband was born.

我们在一名中国女性身上发现了β-珠蛋白基因的变异。HBB基因测序结果显示,在密码子42[β42(CD1)]处出现了Phe→Leu的替换,HBB:c。[9t]由于先证者的出生地,它被命名为Hb宿迁。
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引用次数: 0
Genotype-Phenotype Study of β-Thalassemia Patients in Sabah. 沙巴州β-地中海贫血患者基因型-表型研究。
IF 1 4区 医学 Q3 Medicine Pub Date : 2022-11-01 DOI: 10.1080/03630269.2023.2169154
Latifah Suali, Falah Abass Mohammad Salih, Mohammad Yusof Ibrahim, Mohammad Saffree Bin Jeffree, Fiona Macniesia Thomas, Fong Siew Moy, Yap Shook Fe, Emma Suali, Suhaini Sudi, Caroline Sunggip

β-thalassemia is a serious public health problem in Sabah due to its high prevalence. This study aimed to investigate the effects of different types of β-globin gene mutations, coinheritance with α-globin gene mutations, XmnI-Gγ, and rs368698783 polymorphisms on the β-thalassemia phenotypes in Sabahan patients. A total of 111 patients were included in this study. The sociodemographic profile of the patients was collected using a semi-structured questionnaire, while clinical data were obtained from their medical records. Gap-PCR, ARMS-PCR, RFLP-PCR, and multiplex PCR were performed to detect β- and α-globin gene mutations, as well as XmnI-Gγ and rs368698783 polymorphisms. Our data show that the high prevalence of β-thalassemia in Sabah is not due to consanguineous marriages (5.4%). A total of six different β-globin gene mutations were detected, with Filipino β°-deletion being the most dominant (87.4%). There were 77.5% homozygous β-thalassemia patients, 16.2% compound heterozygous β-thalassemia patients, and 6.3% β-thalassemia/Hb E patients. Further evaluation on compound heterozygous β-thalassemia and β-thalassemia/Hb E patients found no concomitant α-globin gene mutations and the rs368698783 polymorphism. Furthermore, the XmnI-Gγ (-/+) genotype did not demonstrate a strong impact on the disease phenotype, as only two of five patients in the compound heterozygous β-thalassemia group and two of three patients in the β-thalassemia/Hb E group had a moderate phenotype. Our findings indicate that the severity of the β-thalassemia phenotypes is closely related to the type of β-globin gene mutations but not to the XmnI-Gγ and rs368698783 polymorphisms.

β-地中海贫血发病率高,是沙巴州一个严重的公共卫生问题。本研究旨在探讨不同类型β-珠蛋白基因突变、与α-珠蛋白基因突变共遗传、XmnI-Gγ和rs368698783多态性对Sabahan患者β-地中海贫血表型的影响。本研究共纳入111例患者。使用半结构化问卷收集患者的社会人口统计资料,同时从他们的医疗记录中获得临床数据。采用Gap-PCR、ARMS-PCR、RFLP-PCR和多重PCR检测β-和α-珠蛋白基因突变,以及XmnI-Gγ和rs368698783基因多态性。我们的数据显示,沙巴州β-地中海贫血的高患病率并非由于近亲婚姻(5.4%)。共检测到6种不同的β-珠蛋白基因突变,其中以菲氏β°缺失最为显著(87.4%)。纯合型β-地中海贫血患者占77.5%,复合杂合型β-地中海贫血患者占16.2%,β-地中海贫血/Hb E患者占6.3%。进一步评价复合杂合型β-地中海贫血和β-地中海贫血/Hb E患者未发现合并α-珠蛋白基因突变和rs368698783多态性。此外,XmnI-Gγ(-/+)基因型并未显示出对疾病表型的强烈影响,因为复合杂合β-地中海贫血组中只有5名患者中的2名和β-地中海贫血/Hb E组中3名患者中的2名具有中等表型。我们的研究结果表明,β-地中海贫血表型的严重程度与β-珠蛋白基因突变的类型密切相关,而与XmnI-Gγ和rs368698783多态性无关。
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引用次数: 0
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Hemoglobin
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