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AKR1B10 accelerates glycolysis through binding HK2 to promote the malignant progression of oral squamous cell carcinoma AKR1B10 通过结合 HK2 加速糖酵解,促进口腔鳞状细胞癌的恶性发展
Pub Date : 2024-04-26 DOI: 10.1007/s12672-024-00996-0
Ye Cai, Huiling Li, Diya Xie, Yanan Zhu

Background

Oral squamous cell carcinoma (OSCC) remains a rampant oral cavity neoplasm with high degree of aggressiveness. Aldo–keto reductase 1B10 (AKR1B10) that is an oxidoreductase dependent on nicotinamide adenine dinucleotide phosphate (NADPH) has been introduced to possess prognostic potential in OSCC. The present work was focused on specifying the involvement of AKR1B10 in the process of OSCC and its latent functional mechanism.

Methods

AKR1B10 expression in OSCC tissues and cells were detected by RT-qPCR and Western blot analysis. CCK-8 method, EdU staining, wound healing and transwell assays respectively assayed cell viability, proliferation, migration and invasion. Immunofluorescence staining and Western blot evaluated epithelial mesenchymal transition (EMT). Adenosine triphosphate (ATP) contents, glucose consumption and extracellular acidification rate (ECAR) were measured by relevant commercially available kits and Seahorse XF96 Glycolysis Analyzer, severally. The expressions of proteins associated with metastasis and glycolysis were examined with Western blot. Co-IP assay confirmed the binding between AKR1B10 and hexokinase 2 (HK2).

Results

It was observed that AKR1B10 expression was increased in OSCC tissues and cells. After AKR1B10 was knocked down, the proliferation, migration, invasion and EMT of OSCC cells were all hampered. Additionally, AKR1B10 silencing suppressed glycolysis and bound to HK2 in OSCC cells. Up-regulation of HK2 partially abolished the hampered glycolysis, proliferation, migration, invasion and EMT of AKR1B10-silenced OSCC cells.

Conclusion

To sum up, AKR1B10 could bind to HK2 to accelerate glycolysis, thereby facilitating the proliferation, migration, invasion and EMT of OSCC cells.

背景口腔鳞状细胞癌(OSCC)仍然是一种猖獗的口腔肿瘤,具有高度侵袭性。醛酮还原酶 1B10 (AKR1B10) 是一种依赖于烟酰胺腺嘌呤二核苷酸磷酸(NADPH)的氧化还原酶,被认为在 OSCC 中具有预后潜力。本研究的重点是明确 AKR1B10 在 OSCC 过程中的参与及其潜伏的功能机制。CCK-8法、EdU染色法、伤口愈合法和转孔法分别检测细胞活力、增殖、迁移和侵袭。免疫荧光染色和 Western 印迹分析评估了上皮间质转化(EMT)。三磷酸腺苷(ATP)含量、葡萄糖消耗量和细胞外酸化率(ECAR)分别由相关的市售试剂盒和海马 XF96 糖酵解分析仪测定。用 Western 印迹法检测了转移和糖酵解相关蛋白的表达。结果 观察到 AKR1B10 在 OSCC 组织和细胞中的表达增加。结果表明,AKR1B10 在 OSCC 组织和细胞中的表达增加,敲除 AKR1B10 后,OSCC 细胞的增殖、迁移、侵袭和 EMT 均受到阻碍。此外,沉默 AKR1B10 会抑制 OSCC 细胞中的糖酵解并与 HK2 结合。综上所述,AKR1B10 可与 HK2 结合,加速糖酵解,从而促进 OSCC 细胞的增殖、迁移、侵袭和 EMT。
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引用次数: 0
Comprehensive analysis and prognostic assessment of senescence-associated genes in bladder cancer 膀胱癌衰老相关基因的综合分析和预后评估
Pub Date : 2024-04-26 DOI: 10.1007/s12672-024-00987-1
Ruilin Yang, Jieling He, Wenfeng Luo, Renyang Xiang, Ge Zou, Xintao Zhang, Huang Liu, Junhong Deng

Background

The prevalence and mortality of bladder cancer (BLCA) present a significant medical challenge. While the function of senescence-related genes in tumor development is recognized, their prognostic significance in BLCA has not been thoroughly explored.

Methods

BLCA transcriptome datasets were sourced from the TCGA and GEO repositories. Gene groupings were determined through differential gene expression and non-negative matrix factorization (NMF) methodologies. Key senescence-linked genes were isolated using singular and multivariate Cox regression analyses, combined with lasso regression. Validation was undertaken with GEO database information. Predictive models, or nomograms, were developed by merging risk metrics with clinical records, and their efficacy was gauged using ROC curve methodologies. The immune response’s dependency on the risk metric was assessed through the immune phenomenon score (IPS). Additionally, we estimated IC50 metrics for potential chemotherapeutic agents.

Results

Reviewing 406 neoplastic and 19 standard tissue specimens from the TCGA repository facilitated the bifurcation of subjects into two unique clusters (C1 and C2) according to senescence-related gene expression. After a stringent statistical evaluation, a set of ten pivotal genes was discerned and applied for risk stratification. Validity tests for the devised nomograms in forecasting 1, 3, and 5-year survival probabilities for BLCA patients were executed via ROC and calibration plots. IC50 estimations highlighted a heightened responsiveness in the low-risk category to agents like cisplatin, cyclopamine, and sorafenib.

Conclusions

In summation, our research emphasizes the prospective utility of risk assessments rooted in senescence-related gene signatures for enhancing BLCA clinical oversight.

背景膀胱癌(BLCA)的发病率和死亡率是一项重大的医学挑战。虽然衰老相关基因在肿瘤发生中的功能已得到认可,但它们在膀胱癌中的预后意义尚未得到深入探讨。通过差异基因表达和非负矩阵因式分解(NMF)方法确定基因分组。通过单变量和多变量 Cox 回归分析,并结合 lasso 回归,分离出与衰老相关的关键基因。利用 GEO 数据库信息进行了验证。通过将风险指标与临床记录合并,建立了预测模型或提名图,并使用 ROC 曲线方法来衡量其有效性。免疫反应对风险指标的依赖性通过免疫现象评分(IPS)进行评估。此外,我们还估算了潜在化疗药物的 IC50 指标。结果回顾了 TCGA 储存库中的 406 份肿瘤组织标本和 19 份标准组织标本,根据衰老相关基因的表达情况,将受试者分为两个独特的群组(C1 和 C2)。经过严格的统计评估,确定了一组十个关键基因,并将其应用于风险分层。通过 ROC 图和校准图,对所设计的提名图在预测 BLCA 患者 1 年、3 年和 5 年生存概率方面的有效性进行了检验。IC50估计结果表明,低风险类别的患者对顺铂、环丙胺和索拉非尼等药物的反应性更高。结论总之,我们的研究强调了基于衰老相关基因特征的风险评估对加强BLCA临床监督的前瞻性作用。
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引用次数: 0
An endothelial-related prognostic index for bladder cancer patients 膀胱癌患者的内皮相关预后指数
Pub Date : 2024-04-25 DOI: 10.1007/s12672-024-00992-4
Deng-xiong Li, Rui-cheng Wu, Jie Wang, Qing-xin Yu, Zhou-ting Tuo, Lu-xia Ye, De-chao Feng, Shi Deng

Background

Within the tumor microenvironment, endothelial cells hold substantial sway over bladder cancer (BC) prognosis. Herein, we aim to elucidate the impact of endothelial cells on BC patient outcomes by employing an integration of single-cell and bulk RNA sequencing data.

Methods

All data utilized in this study were procured from online databases. R version 3.6.3 and relevant packages were harnessed for the development and validation of an endothelial-associated prognostic index (EPI).

Results

EPI was formulated, incorporating six genes (CYTL1, FAM43A, GSN, HSPG2, RBP7, and SLC2A3). EPI demonstrated significant prognostic value in both The Cancer Genome Atlas (TCGA) and externally validated dataset. Functional results revealed a profound association between EPI and endothelial cell functionality, as well as immune-related processes. Our findings suggest that patients with low-risk EPI scores are more likely to respond positively to immunotherapy, as indicated by immune checkpoint activity, immune infiltration, tumor mutational burden, stemness index, TIDE, and IMvigor210 analyses. Conversely, individuals with high-risk EPI scores exhibited heightened sensitivity to cisplatin, docetaxel, and gemcitabine treatment regimens.

Conclusion

We have effectively discerned pivotal genes from the endothelial cell perspective and constructed an EPI for BC patients, thereby offering promising prospects for precision medicine.

背景在肿瘤微环境中,内皮细胞对膀胱癌(BC)的预后有很大影响。在此,我们旨在通过整合单细胞和大容量 RNA 测序数据,阐明内皮细胞对膀胱癌患者预后的影响。结果EPI的制定包含了6个基因(CYTL1、FAM43A、GSN、HSPG2、RBP7和SLC2A3)。EPI 在癌症基因组图谱(TCGA)和外部验证数据集中都显示出了重要的预后价值。功能结果表明,EPI与内皮细胞功能以及免疫相关过程有密切联系。我们的研究结果表明,从免疫检查点活性、免疫浸润、肿瘤突变负荷、干细胞指数、TIDE和IMvigor210分析来看,EPI评分低风险的患者更有可能对免疫疗法产生积极反应。结论 我们从内皮细胞的角度有效地识别了关键基因,并为 BC 患者构建了 EPI,从而为精准医疗提供了广阔的前景。
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引用次数: 0
Case report: Mutation evolution in a patient with TdT positive high grade B cell lymphoma with MYC and BCL2 rearrangements following the treatment of concurrent follicular lymphoma and diffuse large B-cell lymphoma 病例报告:一名同时患有滤泡淋巴瘤和弥漫大B细胞淋巴瘤并伴有MYC和BCL2重排的TdT阳性高级别B细胞淋巴瘤患者在治疗后发生的突变演变
Pub Date : 2024-04-25 DOI: 10.1007/s12672-024-00991-5
Fen Zhang, Yu Chen, Qian Cui, Yan Ge, Yanhui Liu

Background

Concurrent follicular lymphoma (FL) and diffuse large B-cell lymphoma (DLBCL)was reported in some studies, while the diagnosis of TdT (terminal deoxynucleotydil transferase) positive high grade B cell lymphoma (HGBL) with MYC and BCL2 rearrangements (“double hit”) transformed from FL/DLBCL has been rarely reported. Herein, we described the clinical features and mutation profiles of a case diagnosed with TdT positive “double hit” HGBL following the treatment of FL/DLBCL.

Case presentation

This is a 43-year-old Chinese man who was diagnosed with low grade FL (account for 80%) combined with DLBCL (20%) at a stage of IVB. The patient presented with BCL2/IGH translocation without MYC rearrangement, as well as the expressions of CD20, CD19, CD10 and BCL2 at the initial diagnosis of FL/DLBCL. MYC rearrangement and TdT expression occurred after the treatment. The targeted sequencing revealed mutations in KMT2D, FOXO1, CREBBP, ATM, STAT6, BCL7A, DDX3X, MUC4, FGFR3, ARID5B, DDX11 and PRKCSH genes were the co-mutations shared by the FL/DLBCL and TdT positive “double hit” HGBL, while CCND3, BIRC6, ROBO1 and CHEK2 mutations specifically occurred after the treatment. The overall survival time was 37.8 and 17.8 months after the initial diagnosis of FL/DLBCL and TdT positive “double hit” HGBL, respectively.

Conclusion

This study reports a rare case of TdT positive “double hit” HGBL following the treatment of concurrent FL/DLBCL and highlights the mutation characteristics. Collectively, this study will help enrich the knowledge of TdT positive “double hit” HGBL transformed from FL/DLBCL.

背景一些研究报道了并发滤泡性淋巴瘤(FL)和弥漫大B细胞淋巴瘤(DLBCL),而由FL/DLBCL转化而来的TdT(末端脱氧核苷酸转移酶)阳性伴MYC和BCL2重排("双击")的高级别B细胞淋巴瘤(HGBL)却鲜有报道。在此,我们描述了一例在治疗 FL/DLBCL 后确诊为 TdT 阳性 "双击 "HGBL 的病例的临床特征和基因突变情况。病例介绍这是一名 43 岁的中国男性,被诊断为低分化 FL(占 80%)合并 DLBCL(占 20%),分期为 IVB。患者在初诊 FL/DLBCL 时出现 BCL2/IGH 易位,无 MYC 重排,CD20、CD19、CD10 和 BCL2 均有表达。治疗后出现了MYC重排和TdT表达。靶向测序发现,FL/DLBCL和TdT阳性 "双击 "HGBL共有的突变基因包括KMT2D、FOXO1、CREBBP、ATM、STAT6、BCL7A、DDX3X、MUC4、FGFR3、ARID5B、DDX11和PRKCSH,而CCND3、BIRC6、ROBO1和CHEK2突变则特别发生在治疗后。结论本研究报告了一例罕见的 TdT 阳性 "双击 "HGBL 病例,该病例是在治疗并发的 FL/DLBCL 后发生的,并强调了突变特征。总之,本研究将有助于丰富对由 FL/DLBCL 转化而来的 TdT 阳性 "双击 "HGBL 的认识。
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引用次数: 0
HBO regulates the Warburg effect of hypoxic HCC cells through miR-103a-3p/TRIM35 HBO 通过 miR-103a-3p/TRIM35 调节缺氧性 HCC 细胞的沃伯格效应
Pub Date : 2024-04-20 DOI: 10.1007/s12672-024-00985-3
Yuting Ding, Wenkang Luan, Zhe Wang, Bo Xie, Chengfa Sun

Background

There are a lot of studies on the treatment of tumors with hyperbaric oxygen, while most of them are in breast cancer, prostate cancer and so on. However, there are still few studies on hyperbaric oxygen in treating hepatocellular carcinoma (HCC). According to the current data, hyperbaric oxygen is an effective means to intervene in tumors. The Warburg effect is a unique marker of glucose metabolism in tumors related to hypoxia, making it possible for hyperbaric oxygen to interfere with the tumor through the Warburg effect.

Method

We used the hypoxia/hyperbaric oxygen(HBO)-exposed HCC cells for in vitro studies. Glucose uptake, lactic acid, and adenosine triphosphate (ATP) assessed the Warburg effect. The expression of miR-103a-3p in HCC was detected by using qRT-PCR. The effect of miR-103a-3p/TRIM35 expression level on the cells was measured using the CCK8 method and flow cytometry. The molecular biological mechanism of miR-103a-3p in HCC was examined using the luciferase reporter, MS2-RIP assays.

Result

HBO inhibited the Warburg effect in hypoxic HCC cells. HBO suppressed the expression of miR-103a-3p in hypoxic HCC cells, and miR-103a-3p inhibited the expression of TRIM35 in hypoxic HCC cells. With HBO exposure, miR-103a-3p/TRIM35 regulated the Warburg effect of hypoxic HCC cells.

Conclusion

These findings reveal that HBO regulates the Warburg effect of hypoxic HCC cells through miR-103a-3p/TRIM35 and inhibits tumor growth.

背景关于用高压氧治疗肿瘤的研究很多,但大多数都是针对乳腺癌、前列腺癌等。然而,关于高压氧治疗肝细胞癌(HCC)的研究仍然很少。根据目前的数据,高压氧是干预肿瘤的有效手段。沃伯格效应是肿瘤中葡萄糖代谢与缺氧相关的一种独特标记物,这使得高压氧通过沃伯格效应干预肿瘤成为可能。葡萄糖摄取、乳酸和三磷酸腺苷(ATP)评估了沃伯格效应。通过 qRT-PCR 检测了 miR-103a-3p 在 HCC 中的表达。采用 CCK8 法和流式细胞术测量了 miR-103a-3p/TRIM35 表达水平对细胞的影响。结果HBO抑制了缺氧性HCC细胞的沃伯格效应。HBO抑制了缺氧HCC细胞中miR-103a-3p的表达,而miR-103a-3p抑制了缺氧HCC细胞中TRIM35的表达。这些研究结果表明,HBO 通过 miR-103a-3p/TRIM35 调节缺氧 HCC 细胞的沃伯格效应,从而抑制肿瘤生长。
{"title":"HBO regulates the Warburg effect of hypoxic HCC cells through miR-103a-3p/TRIM35","authors":"Yuting Ding, Wenkang Luan, Zhe Wang, Bo Xie, Chengfa Sun","doi":"10.1007/s12672-024-00985-3","DOIUrl":"https://doi.org/10.1007/s12672-024-00985-3","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background</h3><p>There are a lot of studies on the treatment of tumors with hyperbaric oxygen, while most of them are in breast cancer, prostate cancer and so on. However, there are still few studies on hyperbaric oxygen in treating hepatocellular carcinoma (HCC). According to the current data, hyperbaric oxygen is an effective means to intervene in tumors. The Warburg effect is a unique marker of glucose metabolism in tumors related to hypoxia, making it possible for hyperbaric oxygen to interfere with the tumor through the Warburg effect.</p><h3 data-test=\"abstract-sub-heading\">Method</h3><p>We used the hypoxia/hyperbaric oxygen(HBO)-exposed HCC cells for in vitro studies. Glucose uptake, lactic acid, and adenosine triphosphate (ATP) assessed the Warburg effect. The expression of miR-103a-3p in HCC was detected by using qRT-PCR. The effect of miR-103a-3p/TRIM35 expression level on the cells was measured using the CCK8 method and flow cytometry. The molecular biological mechanism of miR-103a-3p in HCC was examined using the luciferase reporter, MS2-RIP assays.</p><h3 data-test=\"abstract-sub-heading\">Result</h3><p>HBO inhibited the Warburg effect in hypoxic HCC cells. HBO suppressed the expression of miR-103a-3p in hypoxic HCC cells, and miR-103a-3p inhibited the expression of TRIM35 in hypoxic HCC cells. With HBO exposure, miR-103a-3p/TRIM35 regulated the Warburg effect of hypoxic HCC cells.</p><h3 data-test=\"abstract-sub-heading\">Conclusion</h3><p>These findings reveal that HBO regulates the Warburg effect of hypoxic HCC cells through miR-103a-3p/TRIM35 and inhibits tumor growth.</p>","PeriodicalId":13170,"journal":{"name":"Hormones and Cancer","volume":"24 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140627474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
SLC35A2 expression is associated with HER2 expression in breast cancer SLC35A2 的表达与乳腺癌中 HER2 的表达有关
Pub Date : 2024-04-19 DOI: 10.1007/s12672-024-00978-2
Yiran Wang, Xiaobo Peng, Meihong Wu, Bin Wang, Tianran Chen, Xianbao Zhan

The role of SLC35A2 in breast cancer remains poorly understood, with limited available information on its significance. This study aimed to investigate the expression of SLC35A2 and clinicopathological variables in breast cancer patients. Immunohistochemical analysis of SLC35A2 protein was conductedon 40 adjacent non-neoplastic tissues and 320 breast cancer tissues. The study also assesed the association between SLC35A2 expression and breast cancer clinicopathological features of breast cancer, as well as its impact on overall survival. In comparison to adjacent non-neoplastic tissues, a significantly higher expression of SLC35A2 was observed in breast cancer tissues (P = 0.020), and this expression was found to be independently correlated with HER2 positivity (P = 0.001). Survival analysis indicated that patients with low SLC35A2 expression had a more favorable prognosis in HER2-positive subtype breast cancer (P = 0.017). These results suggest that SLC35A2 is overexpressed in breast cancer tissues compared to adjacent non-neoplastic tissues and may serve as a potential prognostic marker for HER2-positive subtype breast cancer. Furthermore, breast cancer patients with the HER2 positive subtype who exhibited decreased levels of SLC35A2 expression demonstrated improved long-term prognostic outcomes.

人们对 SLC35A2 在乳腺癌中的作用仍知之甚少,有关其重要性的信息也很有限。本研究旨在调查乳腺癌患者中 SLC35A2 的表达和临床病理变量。研究人员对 40 例邻近的非肿瘤组织和 320 例乳腺癌组织进行了 SLC35A2 蛋白的免疫组化分析。研究还评估了SLC35A2表达与乳腺癌临床病理特征之间的关系,以及对总生存期的影响。与邻近的非肿瘤组织相比,在乳腺癌组织中观察到 SLC35A2 的表达明显较高(P = 0.020),而且这种表达与 HER2 阳性独立相关(P = 0.001)。生存期分析表明,SLC35A2 低表达的 HER2 阳性亚型乳腺癌患者预后较好(P = 0.017)。这些结果表明,与邻近的非肿瘤组织相比,SLC35A2 在乳腺癌组织中过表达,可作为 HER2 阳性亚型乳腺癌的潜在预后标志物。此外,HER2 阳性亚型乳腺癌患者如果 SLC35A2 表达水平降低,其长期预后会有所改善。
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引用次数: 0
The clinical significance and oncogenic function of LRRFIP1 in pancreatic cancer LRRFIP1 在胰腺癌中的临床意义和致癌功能
Pub Date : 2024-04-18 DOI: 10.1007/s12672-024-00977-3
Jinping Li, Dayun Tuo, Gunan Guo, Yan Gao, Jinfeng Gan

Purpose

Pancreatic cancer is a lethal malignancy with a grim prognosis. Previous studies have proven that Leucine Rich Repeat of Flightless-1 Interacting Protein 1 (LRRFIP1) plays a pivotal role in cell biological processes, while its clinical significance and function in pancreatic cancer remain to be elucidated. Hence, we aimed to explore the roles and mechanisms of LRRFIP1 in pancreatic cancer.

Methods

The expression of LRRFIP1 in pancreatic cancer tissues and its clinical significance for pancreatic cancer were analyzed by immunohistochemistry assay and bioinformatic analysis. The influences of LRRFIP1 on the proliferation and migration of pancreatic cancer cells were assessed in vitro. The underlying mechanisms of LRRFIP1 in pancreatic cancer progression were explored using gene set enrichment analysis (GSEA) and molecular experiments.

Results

The results showed that LRRFIP1 expression was significantly upregulated in pancreatic cancer tissues compared to the normal tissues, and such upregulation was associated with poor prognosis of patients with pancreatic cancer. GSEA revealed that LRRFIP1 upregulation was significantly associated with various cancer-associated signaling pathways, including PI3K/AKT signaling pathway and Wnt pathway. Furthermore, LRRFIP1 was found to be associated with the infiltration of various immune cells. Functionally, LRRFIP1 silencing suppressed cell proliferation somewhat and inhibited migration substantially. Further molecular experiments indicated that LRRFIP1 silencing inactivated the AKT/GSK-3β/β-catenin signaling axis.

Conclusion

Taken together, LRRFIP1 is associated with tumorigenesis, immune cell infiltration, and prognosis in pancreatic cancer, which suggests that LRRFIP1 may be a potential biomarker and therapeutic target for pancreatic cancer.

目的胰腺癌是一种致命的恶性肿瘤,预后十分悲观。以往的研究已经证明,富亮氨酸重复的无翼鸟-1 互作蛋白 1(LRRFIP1)在细胞生物学过程中发挥着关键作用,但其在胰腺癌中的临床意义和功能仍有待阐明。方法通过免疫组化检测和生物信息学分析,分析 LRRFIP1 在胰腺癌组织中的表达及其对胰腺癌的临床意义。在体外评估了 LRRFIP1 对胰腺癌细胞增殖和迁移的影响。结果表明,与正常组织相比,LRRFIP1在胰腺癌组织中表达明显上调,而且这种上调与胰腺癌患者的不良预后有关。GSEA显示,LRRFIP1的上调与多种癌症相关信号通路(包括PI3K/AKT信号通路和Wnt通路)明显相关。此外,研究还发现LRRFIP1与各种免疫细胞的浸润有关。在功能上,沉默 LRRFIP1 在一定程度上抑制了细胞的增殖,并大大抑制了细胞的迁移。结论综上所述,LRRFIP1 与胰腺癌的肿瘤发生、免疫细胞浸润和预后有关,这表明 LRRFIP1 可能是胰腺癌的潜在生物标志物和治疗靶点。
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引用次数: 0
Prediction of prostate cancer aggressiveness using magnetic resonance imaging radiomics: a dual-center study 利用磁共振成像放射组学预测前列腺癌的侵袭性:一项双中心研究
Pub Date : 2024-04-16 DOI: 10.1007/s12672-024-00980-8
Nini Pan, Liuyan Shi, Diliang He, Jianxin Zhao, Lianqiu Xiong, Lili Ma, Jing Li, Kai Ai, Lianping Zhao, Gang Huang

Purpose

The Gleason score (GS) and positive needles are crucial aggressive indicators of prostate cancer (PCa). This study aimed to investigate the usefulness of magnetic resonance imaging (MRI) radiomics models in predicting GS and positive needles of systematic biopsy in PCa.

Material and Methods

A total of 218 patients with pathologically proven PCa were retrospectively recruited from 2 centers. Small-field-of-view high-resolution T2-weighted imaging and post-contrast delayed sequences were selected to extract radiomics features. Then, analysis of variance and recursive feature elimination were applied to remove redundant features. Radiomics models for predicting GS and positive needles were constructed based on MRI and various classifiers, including support vector machine, linear discriminant analysis, logistic regression (LR), and LR using the least absolute shrinkage and selection operator. The models were evaluated with the area under the curve (AUC) of the receiver-operating characteristic.

Results

The 11 features were chosen as the primary feature subset for the GS prediction, whereas the 5 features were chosen for positive needle prediction. LR was chosen as classifier to construct the radiomics models. For GS prediction, the AUC of the radiomics models was 0.811, 0.814, and 0.717 in the training, internal validation, and external validation sets, respectively. For positive needle prediction, the AUC was 0.806, 0.811, and 0.791 in the training, internal validation, and external validation sets, respectively.

Conclusions

MRI radiomics models are suitable for predicting GS and positive needles of systematic biopsy in PCa. The models can be used to identify aggressive PCa using a noninvasive, repeatable, and accurate diagnostic method.

目的 格雷森评分(GS)和阳性针是前列腺癌(PCa)的重要侵袭性指标。本研究旨在探讨磁共振成像(MRI)放射组学模型在预测PCa系统性活检的GS和阳性针方面的实用性。选择小视野高分辨率 T2 加权成像和对比后延迟序列提取放射组学特征。然后,应用方差分析和递归特征消除去除冗余特征。根据核磁共振成像和各种分类器,包括支持向量机、线性判别分析、逻辑回归(LR)和使用最小绝对收缩和选择算子的逻辑回归,构建了预测GS和阳性针的放射组学模型。结果选择 11 个特征作为 GS 预测的主要特征子集,而选择 5 个特征作为阳性针预测的主要特征子集。选择 LR 作为分类器来构建放射组学模型。在 GS 预测中,放射组学模型在训练集、内部验证集和外部验证集的 AUC 分别为 0.811、0.814 和 0.717。结论MRI放射组学模型适用于预测PCa的GS和系统活检阳性针。这些模型可用于使用无创、可重复和准确的诊断方法识别侵袭性 PCa。
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引用次数: 0
T cell-mediated tumor killing sensitivity gene signature-based prognostic score for acute myeloid leukemia 基于 T 细胞介导的肿瘤杀伤敏感性基因特征的急性髓性白血病预后评分
Pub Date : 2024-04-15 DOI: 10.1007/s12672-024-00962-w
Yiyun Pan, FangFang Xie, Wen Zeng, Hailong Chen, Zhengcong Chen, Dechang Xu, Yijian Chen

Background and Objective

Acute myeloid leukemia (AML) is an aggressive, heterogenous hematopoetic malignancies with poor long-term prognosis. T-cell mediated tumor killing plays a key role in tumor immunity. Here, we explored the prognostic performance and functional significance of a T-cell mediated tumor killing sensitivity gene (GSTTK)-based prognostic score (TTKPI).

Methods

Publicly available transcriptomic data for AML were obtained from TCGA and NCBI-GEO. GSTTK were identified from the TISIDB database. Signature GSTTK for AML were identified by differential expression analysis, COX proportional hazards and LASSO regression analysis and a comprehensive TTKPI score was constructed. Prognostic performance of the TTKPI was examined using Kaplan–Meier survival analysis, Receiver operating curves, and nomogram analysis. Association of TTKPI with clinical phenotypes, tumor immune cell infiltration patterns, checkpoint expression patterns were analysed. Drug docking was used to identify important candidate drugs based on the TTKPI-component genes.

Results

From 401 differentially expressed GSTTK in AML, 24 genes were identified as signature genes and used to construct the TTKPI score. High-TTKPI risk score predicted worse survival and good prognostic accuracy with AUC values ranging from 75 to 96%. Higher TTKPI scores were associated with older age and cancer stage, which showed improved prognostic performance when combined with TTKPI. High TTKPI was associated with lower naïve CD4 T cell and follicular helper T cell infiltrates and higher M2 macrophages/monocyte infiltration. Distinct patterns of immune checkpoint expression corresponded with TTKPI score groups. Three agents; DB11791 (Capmatinib), DB12886 (GSK-1521498) and DB14773 (Lifirafenib) were identified as candidates for AML.

Conclusion

A T-cell mediated killing sensitivity gene-based prognostic score TTKPI showed good accuracy in predicting survival in AML. TTKPI corresponded to functional and immunological features of the tumor microenvironment including checkpoint expression patterns and should be investigated for precision medicine approaches.

背景和目的 急性髓性白血病(AML)是一种侵袭性、异质性造血恶性肿瘤,长期预后不良。T细胞介导的肿瘤杀伤在肿瘤免疫中起着关键作用。在此,我们探讨了基于T细胞介导的肿瘤杀伤敏感基因(GSTTK)的预后评分(TTKPI)的预后性能和功能意义。从 TISIDB 数据库中鉴定 GSTTK。通过差异表达分析、COX比例危险度分析和LASSO回归分析确定了AML的标志性GSTTK,并构建了TTKPI综合评分。采用卡普兰-梅耶生存分析、接收者操作曲线和提名图分析对TTKPI的预后性能进行了检验。分析了TTKPI与临床表型、肿瘤免疫细胞浸润模式、检查点表达模式的关联。结果从急性髓细胞性白血病中401个差异表达的GSTTK中,确定了24个基因为特征基因,并用于构建TTKPI评分。高TTKPI风险评分预示着较差的生存率和良好的预后准确性,AUC值在75%到96%之间。较高的TTKPI评分与年龄较大和癌症分期有关,与TTKPI结合使用可改善预后效果。高TTKPI与较低的幼稚CD4 T细胞和滤泡辅助T细胞浸润以及较高的M2巨噬细胞/单核细胞浸润相关。免疫检查点表达的不同模式与 TTKPI 评分组相对应。三种药物:DB11791(卡马替尼)、DB12886(GSK-1521498)和DB14773(利菲尼)被确定为治疗急性髓细胞性白血病的候选药物。TTKPI与肿瘤微环境的功能和免疫学特征(包括检查点表达模式)相对应,应在精准医疗方法中加以研究。
{"title":"T cell-mediated tumor killing sensitivity gene signature-based prognostic score for acute myeloid leukemia","authors":"Yiyun Pan, FangFang Xie, Wen Zeng, Hailong Chen, Zhengcong Chen, Dechang Xu, Yijian Chen","doi":"10.1007/s12672-024-00962-w","DOIUrl":"https://doi.org/10.1007/s12672-024-00962-w","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background and Objective</h3><p>Acute myeloid leukemia (AML) is an aggressive, heterogenous hematopoetic malignancies with poor long-term prognosis. T-cell mediated tumor killing plays a key role in tumor immunity. Here, we explored the prognostic performance and functional significance of a T-cell mediated tumor killing sensitivity gene (GSTTK)-based prognostic score (TTKPI).</p><h3 data-test=\"abstract-sub-heading\">Methods</h3><p>Publicly available transcriptomic data for AML were obtained from TCGA and NCBI-GEO. GSTTK were identified from the TISIDB database. Signature GSTTK for AML were identified by differential expression analysis, COX proportional hazards and LASSO regression analysis and a comprehensive TTKPI score was constructed. Prognostic performance of the TTKPI was examined using Kaplan–Meier survival analysis, Receiver operating curves, and nomogram analysis. Association of TTKPI with clinical phenotypes, tumor immune cell infiltration patterns, checkpoint expression patterns were analysed. Drug docking was used to identify important candidate drugs based on the TTKPI-component genes.</p><h3 data-test=\"abstract-sub-heading\">Results</h3><p>From 401 differentially expressed GSTTK in AML, 24 genes were identified as signature genes and used to construct the TTKPI score. High-TTKPI risk score predicted worse survival and good prognostic accuracy with AUC values ranging from 75 to 96%. Higher TTKPI scores were associated with older age and cancer stage, which showed improved prognostic performance when combined with TTKPI. High TTKPI was associated with lower naïve CD4 T cell and follicular helper T cell infiltrates and higher M2 macrophages/monocyte infiltration. Distinct patterns of immune checkpoint expression corresponded with TTKPI score groups. Three agents; DB11791 (Capmatinib), DB12886 (GSK-1521498) and DB14773 (Lifirafenib) were identified as candidates for AML.</p><h3 data-test=\"abstract-sub-heading\">Conclusion</h3><p>A T-cell mediated killing sensitivity gene-based prognostic score TTKPI showed good accuracy in predicting survival in AML. TTKPI corresponded to functional and immunological features of the tumor microenvironment including checkpoint expression patterns and should be investigated for precision medicine approaches.</p>","PeriodicalId":13170,"journal":{"name":"Hormones and Cancer","volume":"7 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140565143","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Circular RNA COL1A1 promotes Warburg effect and tumor growth in nasopharyngeal carcinoma 环状 RNA COL1A1 促进鼻咽癌的沃伯格效应和肿瘤生长
Pub Date : 2024-04-15 DOI: 10.1007/s12672-024-00941-1
ZeJun Zhou, Fang Xu, Tao Zhang

Objective

Circular RNAs (circRNAs), pivotal in the pathogenesis and progression of nasopharyngeal carcinoma (NPC), remain a significant point of investigation for potential therapeutic interventions. Our research was driven by the objective to decipher the roles and underlying mechanisms of hsa_circ_0044569 (circCOL1A1) in governing the malignant phenotypes and the Warburg effect in NPC.

Methods

We systematically collected samples from NPC tissues and normal nasopharyngeal epithelial counterparts. The expression levels of circCOL1A1, microRNA-370-5p (miR-370-5p), and prothymosin alpha (PTMA) were quantitatively determined using quantitative polymerase chain reaction (qPCR) and Western blotting. Transfections in NPC cell lines were conducted using small interfering RNAs (siRNAs) or vectors carrying the pcDNA 3.1 construct for overexpression studies. We interrogated the circCOL1A1/miR-370-5p/PTMA axis's role in cellular functions through a series of assays: 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide for cell viability, colony formation for growth, Transwell assays for migration and invasion, and Western blotting for protein expression profiling. To elucidate the molecular interactions, we employed luciferase reporter assays and RNA immunoprecipitation techniques.

Results

Our investigations revealed that circCOL1A1 was a stable circRNA, highly expressed in both NPC tissues and derived cell lines. A correlation analysis with clinical pathological features demonstrated a significant association between circCOL1A1 expression, lymph node metastasis, and the tumor node metastasis staging system of NPC. Functionally, silencing circCOL1A1 led to substantial suppression of cell proliferation, migration, invasion, and metabolic alterations characteristic of the Warburg effect in NPC cells. At the molecular level, circCOL1A1 appeared to modulate PTMA expression by acting as a competitive endogenous RNA or 'sponge' for miR-370-5p, which in turn promoted the malignant characteristics of NPC cells.

Conclusion

To conclude, our findings delineate that circCOL1A1 exerts its oncogenic influence in NPC through the modulation of the miR-370-5p/PTMA signaling axis.

目的环状核糖核酸(circRNA)在鼻咽癌(NPC)的发病机制和进展过程中起着关键作用,它仍然是潜在治疗干预的一个重要研究点。我们的研究目标是破译 hsa_circ_0044569(circCOL1A1)在鼻咽癌恶性表型和沃伯格效应中的作用和潜在机制。我们采用定量聚合酶链反应(qPCR)和 Western 印迹法对 circCOL1A1、microRNA-370-5p(miR-370-5p)和原肌球蛋白α(PTMA)的表达水平进行了定量测定。使用小干扰 RNA(siRNA)或携带 pcDNA 3.1 构建的载体对鼻咽癌细胞系进行转染,以进行过表达研究。我们通过一系列检测方法研究了 circCOL1A1/miR-370-5p/PTMA 轴在细胞功能中的作用:3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide 检测细胞活力、菌落形成检测生长、Transwell 检测迁移和侵袭,以及 Western 印迹检测蛋白质表达谱。结果我们的研究发现,circCOL1A1 是一种稳定的 circRNA,在鼻咽癌组织和衍生细胞系中均有高表达。与临床病理特征的相关性分析表明,circCOL1A1的表达、淋巴结转移和鼻咽癌的肿瘤结节转移分期系统之间存在显著关联。从功能上讲,沉默 circCOL1A1 能大大抑制鼻咽癌细胞的增殖、迁移、侵袭和沃伯格效应特征的代谢改变。在分子水平上,circCOL1A1似乎通过充当miR-370-5p的竞争性内源性RNA或 "海绵 "来调节PTMA的表达,而PTMA的表达反过来又促进了鼻咽癌细胞的恶性特征。
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引用次数: 0
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Hormones and Cancer
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