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A programmed cell death-related gene signature to predict prognosis and therapeutic responses in liver hepatocellular carcinoma 预测肝肝细胞癌预后和治疗反应的程序性细胞死亡相关基因特征
Pub Date : 2024-03-11 DOI: 10.1007/s12672-024-00924-2
Xinyu Gu, Jie Pan, Yanle Li, Liushun Feng

Background

Programmed cell death (PCD) functions critically in cancers and PCD-related genes are associated with tumor microenvironment (TME), prognosis and therapeutic responses of cancer patients. This study stratified hepatocellular carcinoma (HCC) patients and develop a prognostic model for predicting prognosis and therapeutic responses.

Methods

Consensus clustering analysis was performed to subtype HCC patients in The Cancer Genome Atlas (TCGA) database. Differentially expressed genes (DEGs) among the subtypes were filtered and subjected to the least absolute shrinkage and selection operator (LASSO) regression analysis and univariate Cox regression analysis to filter prognostic genes. A PCD-related prognostic gene signature in TCGA was constructed and validated in ICGC-LIRI-JP and GSE14520 datasets. TME was analyzed using CIBERSORT, MCP-counter, TIMER and EPIC algorithms. Drug sensitivity was predicted by oncoPredict package. Spearman analysis was used to detect correlation.

Results

Four molecular subtypes were categorized based on PCD-related genes. Subtype C1 showed the poorest prognosis, the most infiltration of Fibroblasts, dentritic cell (DC) and cancer-associated fibroblasts (CAFs), and the highest TIDE score. C4 had a better prognosis survival outcome, and lowest immune cell infiltration. The survival outcomes of C2 and C3 were intermediate. Next, a total of 69 co-DEGs were screened among the four subtypes and subsequently we identified five prognostic genes (MCM2, SPP1, S100A9, MSC and EPO) for developing the prognostic model. High-risk patients not only had unfavorable prognosis, higher clinical stage and grade, and more inflammatory pathway enrichment, but also possessed higher possibility of immune escape and were more sensitive to Cisplatin and 5. Fluorouracil. The robustness of the prognostic model was validated in external datasets.

Conclusion

This study provides new insights into clinical subtyping and the PCD-related prognostic signature may serve as a useful tool to predict prognosis and guide treatments for patients with HCC.

背景程序性细胞死亡(PCD)在癌症中起着至关重要的作用,PCD相关基因与肿瘤微环境(TME)、癌症患者的预后和治疗反应有关。这项研究对肝细胞癌(HCC)患者进行了分层,并建立了一个预测预后和治疗反应的预后模型。筛选出亚型中的差异表达基因(DEGs),并对其进行最小绝对收缩和选择算子(LASSO)回归分析和单变量Cox回归分析,以筛选出预后基因。构建了TCGA中与PCD相关的预后基因特征,并在ICGC-LIRI-JP和GSE14520数据集中进行了验证。使用CIBERSORT、MCP-counter、TIMER和EPIC算法分析了TME。药物敏感性由 oncoPredict 软件包预测。结果根据 PCD 相关基因分为四种分子亚型。C1亚型预后最差,成纤维细胞、豆状细胞(DC)和癌相关成纤维细胞(CAF)浸润最多,TIDE评分最高。C4 的预后生存结果较好,免疫细胞浸润程度最低。C2和C3的生存结果介于两者之间。随后,我们在四个亚型中筛选出了共 69 个共 DEGs,并确定了五个预后基因(MCM2、SPP1、S100A9、MSC 和 EPO),用于建立预后模型。高危患者不仅预后不良、临床分期和分级更高、炎症通路更丰富,而且免疫逃逸的可能性更高,对顺铂和 5.氟尿嘧啶更敏感。该研究为临床亚型分析提供了新的见解,与 PCD 相关的预后特征可作为预测预后和指导 HCC 患者治疗的有用工具。
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引用次数: 0
GABPB1 plays a cancer-promoting role in non-small cell lung cancer GABPB1 在非小细胞肺癌中发挥促癌作用
Pub Date : 2024-03-11 DOI: 10.1007/s12672-024-00914-4
Tuo Wang, Cong Cao, Yu Fan, Jialing Xu, Tao Hua, Jie Ding, Zejie Liu, Beili Wang, Juanwen Lian

Abstract

Background

GABPB1, the gene that encodes two isoforms of the beta subunit of GABP, has been identified as an oncogene in multiple malignant tumors. However, the role and mode of action of GABPB1 in malignant tumors, especially in lung cancer, are not well understood and need further research.

Methods

Our research focused on examining the biological function of GABPB1 in NSCLC (Non-Small Cell Lung Cancer). We analysed tumor data from public databases to assess the expression of GABPB1 in NSCLC and its correlation with patient prognosis and investigated GABPB1 expression and methylation patterns in relation to the tumor microenvironment. In parallel, experiments were conducted using short hairpin RNA (shRNA) to suppress the GABPB1 gene in human lung cancer cells to evaluate the effects on cell proliferation, viability, and apoptosis.

Results

GABPB1 was widely expressed in various tissues of the human body. Compared to that in normal tissues, the expression of this gene was different in multiple tumor tissues. GABPB1 was highly expressed in lung cancer tissues and cell lines. Its expression was associated with molecular subtype and cellular signalling pathways, and a high level of GABPB1 expression was related to a poor prognosis in lung adenocarcinoma patients. The expression and methylation of GABPB1 affect the tumor microenvironment. After suppressing the expression of GABPB1 in both A549 and H1299 cells, we found a decrease in cell growth and expression, the formation of clones and an increase in the apoptosis rate.

Conclusions

Our research verified that GABPB1 promotes the tumorigenesis of NSCLC and has an inhibitory effect on tumor immunity. The specific role of GABPB1 may vary among different pathological types of NSCLC. This molecule can serve as a prognostic indicator for lung adenocarcinoma, and its methylation may represent a potential breakthrough in treatment by altering the tumor immune microenvironment in lung squamous cell carcinoma. The role and mechanism of action of GABPB1 in NSCLC should be further explored.

摘要 背景 GABPB1 基因编码 GABP beta 亚基的两种异构体,已被确定为多种恶性肿瘤的致癌基因。然而,GABPB1 在恶性肿瘤(尤其是肺癌)中的作用和作用模式尚不十分清楚,需要进一步研究。 方法 我们的研究重点是检测 GABPB1 在 NSCLC(非小细胞肺癌)中的生物学功能。我们分析了公共数据库中的肿瘤数据,以评估 GABPB1 在 NSCLC 中的表达及其与患者预后的相关性,并研究了 GABPB1 表达和甲基化模式与肿瘤微环境的关系。同时,实验还使用短发夹RNA(shRNA)抑制人肺癌细胞中的GABPB1基因,以评估其对细胞增殖、活力和凋亡的影响。 结果 GABPB1 广泛表达于人体的各种组织中。与正常组织相比,该基因在多种肿瘤组织中的表达有所不同。GABPB1 在肺癌组织和细胞系中高表达。GABPB1的高表达与肺腺癌患者的预后不良有关。GABPB1 的表达和甲基化会影响肿瘤微环境。抑制 GABPB1 在 A549 和 H1299 细胞中的表达后,我们发现细胞生长和表达减少,克隆形成减少,凋亡率增加。 结论 我们的研究验证了 GABPB1 能促进 NSCLC 的肿瘤发生,并对肿瘤免疫有抑制作用。在不同病理类型的 NSCLC 中,GABPB1 的具体作用可能有所不同。该分子可作为肺腺癌的预后指标,其甲基化可通过改变肺鳞癌的肿瘤免疫微环境而成为治疗的潜在突破口。GABPB1 在 NSCLC 中的作用和作用机制有待进一步探索。
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引用次数: 0
PLCD3 inhibits apoptosis and promotes proliferation, invasion and migration in gastric cancer PLCD3 可抑制胃癌细胞凋亡,促进其增殖、侵袭和迁移
Pub Date : 2024-02-02 DOI: 10.1007/s12672-024-00881-w
Yantao Yu, Shantanu Baral, Qiannan Sun, Jianyue Ding, Qi Zhang, Fanyu Zhao, Shuyang Gao, Qing Yao, Haoyue Yu, Bin Liu, Daorong Wang

Gastric cancer (GC) is a heterogeneous disease whose development is accompanied by alterations in a variety of pathogenic genes. The phospholipase C Delta 3 enzyme is a member of the phospholipase C family, which controls substance transport between cells in the body. However, its role in gastric cancer has not been discovered. The purpose of this study was to investigate the expression and mechanism of action of PLCD3 in connection to gastric cancer. By Western blot analysis and immunohistochemistry, PLCD3 mRNA and protein expression levels were measured, with high PLCD3 expression suggesting poor prognosis. In N87 and HGC-27 cells, the silencing of PLCD3 using small interfering RNA effectively induced apoptosis and inhibited tumor cell proliferation, invasion, and migration. Conversely, overexpression of PLCD3 using overexpressed plasmids inhibited apoptosis in AGS and BGC-823 cells and promoted proliferation, migration, and invasion. In order to investigate the underlying mechanisms, we conducted further analysis of PLCD3, which indicates that this protein is closely related to the cell cycle and EMT. Additionally, we found that overexpression of PLCD3 inhibits apoptosis and promotes the development of GC cells through JAK2/STAT3 signaling. In conclusion, PLCD3 inhibits apoptosis and promotes proliferation, invasion, and migration, which indicated that PLCD3 might serve as a therapeutic target for gastric cancer.

胃癌(GC)是一种异质性疾病,其发展伴随着多种致病基因的改变。磷脂酶 C Delta 3 是磷脂酶 C 家族的成员,控制着体内细胞间的物质运输。然而,它在胃癌中的作用尚未被发现。本研究的目的是调查 PLCD3 的表达及其与胃癌的作用机制。通过Western印迹分析和免疫组化,检测了PLCD3 mRNA和蛋白的表达水平。在 N87 和 HGC-27 细胞中,使用小干扰 RNA 沉默 PLCD3 能有效诱导细胞凋亡,并抑制肿瘤细胞的增殖、侵袭和迁移。相反,利用过表达质粒过表达 PLCD3 可抑制 AGS 和 BGC-823 细胞的凋亡,促进增殖、迁移和侵袭。为了研究其潜在机制,我们对 PLCD3 进行了进一步分析,结果表明该蛋白与细胞周期和 EMT 密切相关。此外,我们还发现过表达 PLCD3 可抑制细胞凋亡,并通过 JAK2/STAT3 信号转导促进 GC 细胞的发展。总之,PLCD3 可抑制细胞凋亡,促进细胞增殖、侵袭和迁移,这表明 PLCD3 可作为胃癌的治疗靶点。
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引用次数: 0
Hypofractionated versus conventional fractionation external beam radiotherapy in intermediate and high risk localized prostate cancer 在中度和高度危险的局部前列腺癌中,低分量与传统分量外照射疗法的比较
Pub Date : 2024-02-02 DOI: 10.1007/s12672-024-00876-7
Eileen Samuel, Saliha Zaman, Muhammad Abu Bakar, Muhammad Mohsin Fareed

Background

Prostate cancer is the second most common malignancy in men, and its incidence is increasing which is attributed to increased screening programs. The treatment options of intermediate and high risk prostate cancer include radical prostatectomy, radiotherapy and androgen deprivation therapy. Hypofractionated radiotherapy is becoming more popular lately due to better understanding of the radiobiology of prostate cancer and favorable logistics.

Objective

To compare the toxicity and efficacy of hypofractionated versus conventional fractionation external beam radiotherapy in patients with intermediate and high risk localized prostate cancer treated in Shaukat Khanum Memorial Hospital and Research Center, Lahore (SKMCH & RC).

Methodology

We retrospectively conducted this study on histopathologically confirmed 114 patients with prostate adenocarcinoma who underwent treatment from January 2013 till December 2018. These patients were treated with radical radiotherapy along with hormonal therapy as per indication. Data was collected from electronic hospital system and analyzed by SPSS version 23.

Results

114 patients were selected according to the inclusion criteria. Mean age was 68 years (61–75). 88% of patients had stage III-IVA disease at the time of diagnosis. Mean PSA and GS was 33 ± 39 SD and 7 ± 0.9 SD respectively. 89% (n = 102) received radiotherapy with 69% of patients receiving dose of 60 Gy in 20 fractions. Among patients who received hypofractionated dose, 86% (n = 61) of them were categorized as high risk and 14% (n = 10) were intermediate risk, whereas among conventional group 90% (n = 28) were high risk patients and 10% (n = 3) were of intermediate risk. In hypofractionated dose group, 14% (n = 10) developed grade 2 proctitis and 8% (n = 6) developed grade 2 cystitis, in contrast to conventional dose group in which only 3 patients (5%) developed grade 2 GI toxicity and 2 patients (2.9%) had grade 2 GU toxicity. However, these toxicities and their grade were clinically insignificant when compared with the dose groups (p = 0.11). 5 year overall survival for hypofractionated radiotherapy versus conventional dose was 100% and 90% respectively with 95% Cl and p value of 0.3 (clinically insignificant), whereas 5 year disease free survival was 100% and 75% for hypofractionation versus conventional EBRT respectively with 95% CI and p value of 0.04 (clinically significant).

Conclusion

Hypofractionated radiotherapy in patients with intermediate and high risk localized prostate cancer has better disease free survival at the expense of higher risk for proctitis and cystitis but no difference in overall survival as compared to conventional dose of radiation.

背景前列腺癌是男性第二大最常见的恶性肿瘤,由于筛查项目的增加,其发病率正在上升。中、高危前列腺癌的治疗方法包括根治性前列腺切除术、放射治疗和雄激素剥夺治疗。目的比较在拉合尔肖卡特卡努姆纪念医院和研究中心(SKMCH & RC)接受治疗的中度和高危局部前列腺癌患者接受低分次与传统分次体外放射治疗的毒性和疗效。方法我们对2013年1月至2018年12月期间接受治疗的114名经组织病理学确诊的前列腺腺癌患者进行了回顾性研究。这些患者根据适应症接受了根治性放疗和激素治疗。数据来自医院电子系统,并通过 SPSS 23 版进行分析。结果根据纳入标准选择了 114 名患者。平均年龄为 68 岁(61-75 岁)。88%的患者在确诊时处于 III-IVA 期。平均 PSA 和 GS 分别为 33 ± 39 SD 和 7 ± 0.9 SD。89%的患者(n = 102)接受了放疗,其中69%的患者接受了20次分次60 Gy的剂量。在接受低分次剂量治疗的患者中,86%(61 人)被归类为高危患者,14%(10 人)为中危患者;而在常规组中,90%(28 人)为高危患者,10%(3 人)为中危患者。在低剂量组中,14%(10 人)出现 2 级直肠炎,8%(6 人)出现 2 级膀胱炎,而在常规剂量组中,只有 3 名患者(5%)出现 2 级消化道毒性,2 名患者(2.9%)出现 2 级泌尿系统毒性。然而,与剂量组相比,这些毒性及其等级在临床上并不显著(P = 0.11)。低分次放疗与常规剂量相比,5年总生存率分别为100%和90%(95% Cl),P值为0.3(临床意义不大);低分次放疗与常规EBRT相比,5年无病生存率分别为100%和75%(95% CI),P值为0.04(临床意义不大)。结论中、高风险局部前列腺癌患者接受低分次放疗的无病生存率更高,但直肠炎和膀胱炎的风险更高,但总生存率与常规剂量放疗相比没有差异。
{"title":"Hypofractionated versus conventional fractionation external beam radiotherapy in intermediate and high risk localized prostate cancer","authors":"Eileen Samuel, Saliha Zaman, Muhammad Abu Bakar, Muhammad Mohsin Fareed","doi":"10.1007/s12672-024-00876-7","DOIUrl":"https://doi.org/10.1007/s12672-024-00876-7","url":null,"abstract":"<h3 data-test=\"abstract-sub-heading\">Background</h3><p>Prostate cancer is the second most common malignancy in men, and its incidence is increasing which is attributed to increased screening programs. The treatment options of intermediate and high risk prostate cancer include radical prostatectomy, radiotherapy and androgen deprivation therapy. Hypofractionated radiotherapy is becoming more popular lately due to better understanding of the radiobiology of prostate cancer and favorable logistics.</p><h3 data-test=\"abstract-sub-heading\">Objective</h3><p>To compare the toxicity and efficacy of hypofractionated versus conventional fractionation external beam radiotherapy in patients with intermediate and high risk localized prostate cancer treated in Shaukat Khanum Memorial Hospital and Research Center, Lahore (SKMCH &amp; RC).</p><h3 data-test=\"abstract-sub-heading\">Methodology</h3><p>We retrospectively conducted this study on histopathologically confirmed 114 patients with prostate adenocarcinoma who underwent treatment from January 2013 till December 2018. These patients were treated with radical radiotherapy along with hormonal therapy as per indication. Data was collected from electronic hospital system and analyzed by SPSS version 23.</p><h3 data-test=\"abstract-sub-heading\">Results</h3><p>114 patients were selected according to the inclusion criteria. Mean age was 68 years (61–75). 88% of patients had stage III-IVA disease at the time of diagnosis. Mean PSA and GS was 33 ± 39 SD and 7 ± 0.9 SD respectively. 89% (n = 102) received radiotherapy with 69% of patients receiving dose of 60 Gy in 20 fractions. Among patients who received hypofractionated dose, 86% (n = 61) of them were categorized as high risk and 14% (n = 10) were intermediate risk, whereas among conventional group 90% (n = 28) were high risk patients and 10% (n = 3) were of intermediate risk. In hypofractionated dose group, 14% (n = 10) developed grade 2 proctitis and 8% (n = 6) developed grade 2 cystitis, in contrast to conventional dose group in which only 3 patients (5%) developed grade 2 GI toxicity and 2 patients (2.9%) had grade 2 GU toxicity. However, these toxicities and their grade were clinically insignificant when compared with the dose groups (p = 0.11). 5 year overall survival for hypofractionated radiotherapy versus conventional dose was 100% and 90% respectively with 95% Cl and p value of 0.3 (clinically insignificant), whereas 5 year disease free survival was 100% and 75% for hypofractionation versus conventional EBRT respectively with 95% CI and p value of 0.04 (clinically significant).</p><h3 data-test=\"abstract-sub-heading\">Conclusion</h3><p>Hypofractionated radiotherapy in patients with intermediate and high risk localized prostate cancer has better disease free survival at the expense of higher risk for proctitis and cystitis but no difference in overall survival as compared to conventional dose of radiation.</p>","PeriodicalId":13170,"journal":{"name":"Hormones and Cancer","volume":"45 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139664855","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
RPN1 promotes the proliferation and invasion of breast cancer cells by activating the PI3K/AKT/mTOR signaling pathway RPN1 通过激活 PI3K/AKT/mTOR 信号通路促进乳腺癌细胞的增殖和侵袭
Pub Date : 2024-02-01 DOI: 10.1007/s12672-024-00875-8
Wei-juan Shen, Yi Zhang

Ribophorin I (RPN1), a part of an N-oligosaccharyl-transferase complex, plays a vital role in the development of multiple cancers. However, its biological role in breast cancer has not been completely clarified. The RPN1 expression level was measured in breast cancer tissues and breast cancer cell lines (MCF7) using RT-qPCR. After down-regulating RPN1 expression by shRNA, the effects of RPN1 on the proliferation, migration and invasion of MCF7 cells were examined. Mechanistically, we assessed the effect of RPN1 on the PI3K/ AKT/mTOR signaling pathway. We found that RPN1 level was up-regulated in breast cancer tissues and cells compared with adjacent non-tumor tissues or MCF10A cells. RPN1 knockdown induced apoptosis and attenuated the proliferation, migration, and invasion of MCF7 cells. Moreover, RPN1 knockdown lowered the levels of p-PI3K/PI3K, p-AKT/AKT, and p-mTOR/mTOR, which were rescued by 740Y-P, a PI3K activator. 740Y-P also reversed the effects of RPN1 knockdown on apoptosis, proliferation, migration, and invasion in MCF7 cells. Taken together, RPN1 promotes the proliferation, migration, and invasion of breast cancer cells via the PI3K/AKT/mTOR signaling pathway.

核糖蛋白 I(RPN1)是 N-寡糖基转移酶复合物的一部分,在多种癌症的发展过程中起着至关重要的作用。然而,它在乳腺癌中的生物学作用尚未完全明确。本研究利用 RT-qPCR 技术检测了 RPN1 在乳腺癌组织和乳腺癌细胞系(MCF7)中的表达水平。通过 shRNA 下调 RPN1 的表达后,研究了 RPN1 对 MCF7 细胞增殖、迁移和侵袭的影响。我们从机制上评估了RPN1对PI3K/ AKT/mTOR信号通路的影响。我们发现,与邻近的非肿瘤组织或 MCF10A 细胞相比,RPN1 在乳腺癌组织和细胞中的水平上调。敲除 RPN1 可诱导 MCF7 细胞凋亡,并减少其增殖、迁移和侵袭。此外,RPN1基因敲除降低了p-PI3K/PI3K、p-AKT/AKT和p-mTOR/mTOR的水平,而PI3K激活剂740Y-P可以挽救这些水平。740Y-P 还逆转了 RPN1 敲除对 MCF7 细胞凋亡、增殖、迁移和侵袭的影响。综上所述,RPN1 通过 PI3K/AKT/mTOR 信号通路促进乳腺癌细胞的增殖、迁移和侵袭。
{"title":"RPN1 promotes the proliferation and invasion of breast cancer cells by activating the PI3K/AKT/mTOR signaling pathway","authors":"Wei-juan Shen, Yi Zhang","doi":"10.1007/s12672-024-00875-8","DOIUrl":"https://doi.org/10.1007/s12672-024-00875-8","url":null,"abstract":"<p>Ribophorin I (RPN1), a part of an N-oligosaccharyl-transferase complex, plays a vital role in the development of multiple cancers. However, its biological role in breast cancer has not been completely clarified. The RPN1 expression level was measured in breast cancer tissues and breast cancer cell lines (MCF7) using RT-qPCR. After down-regulating RPN1 expression by shRNA, the effects of RPN1 on the proliferation, migration and invasion of MCF7 cells were examined. Mechanistically, we assessed the effect of RPN1 on the PI3K/ AKT/mTOR signaling pathway. We found that RPN1 level was up-regulated in breast cancer tissues and cells compared with adjacent non-tumor tissues or MCF10A cells. RPN1 knockdown induced apoptosis and attenuated the proliferation, migration, and invasion of MCF7 cells. Moreover, RPN1 knockdown lowered the levels of p-PI3K/PI3K, p-AKT/AKT, and p-mTOR/mTOR, which were rescued by 740Y-P, a PI3K activator. 740Y-P also reversed the effects of RPN1 knockdown on apoptosis, proliferation, migration, and invasion in MCF7 cells. Taken together, RPN1 promotes the proliferation, migration, and invasion of breast cancer cells via the PI3K/AKT/mTOR signaling pathway.</p>","PeriodicalId":13170,"journal":{"name":"Hormones and Cancer","volume":"86 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"139664447","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A bibliometric and visualized in oral microbiota and cancer research from 2013 to 2022 2013 至 2022 年口腔微生物群与癌症研究的文献计量与可视化
Pub Date : 2024-02-01 DOI: 10.1007/s12672-024-00878-5
Zhiyu Gu, Yunkun Liu

Numerous studies have highlighted the implication of oral microbiota in various cancers. However, no bibliometric analysis has been conducted on the relationship between oral microbiota and cancer. This bibliometric analysis aimed to identify the research hotspots in oral microbiota and cancer research, as well as predict future research trends. The literature published relating to oral microbiota and cancer was searched from the Web of Science Core Collection database (WoSCC) from 2013 to 2022. VOSviewer or Citespace software was used to perform the bibliometric analysis, focusing on countries, institutions, authors, journals, keywords and references. A total of 1516 publications were included in the analysis. The number of publications related oral microbiota and cancer increased annually, reaching its peak in 2022 with 287 papers. The United States (456) and China (370) were the countries with the most publications and made significant contributions to the field. Sears CL and Zhou XD were the most productive authors. The high frequency of keywords revealed key topics, including cancer (colorectal cancer, oral cancer), oral microbiota (Fusobacterium nucleatum, Porphyromonas gingivalis), and inflammation (periodontal disease). The latest trend keywords were F. nucleatum, dysbiosis, prognosis, tumor microenvironment, gastric microbiota, complications and survival, suggesting a new hotspot in the field of oral microbiota and cancer. Our study provides a comprehensive analysis of oral microbiota and cancer research, revealing an increase in publications in recent years. Future research directions will continue to focus on the diversity of oral microbiota impacted by cancers and the underlying mechanism connecting them, providing new ideas for targeted therapy of tumorigenesis.

许多研究都强调了口腔微生物群对各种癌症的影响。然而,还没有对口腔微生物群与癌症之间的关系进行文献计量分析。这项文献计量分析旨在确定口腔微生物群与癌症研究的热点,并预测未来的研究趋势。我们从科学网核心数据库(WoSCC)中检索了2013年至2022年发表的与口腔微生物群和癌症有关的文献。使用 VOSviewer 或 Citespace 软件进行文献计量分析,重点关注国家、机构、作者、期刊、关键词和参考文献。共有 1516 篇出版物被纳入分析。与口腔微生物群和癌症有关的论文数量逐年增加,在2022年达到高峰,有287篇论文。美国(456 篇)和中国(370 篇)是发表论文最多的国家,在该领域做出了重大贡献。Sears CL 和 Zhou XD 是发表论文最多的作者。高频关键词揭示了关键主题,包括癌症(结直肠癌、口腔癌)、口腔微生物群(核酸镰刀菌、牙龈卟啉单胞菌)和炎症(牙周病)。最新的趋势关键词是核酸镰刀菌、菌群失调、预后、肿瘤微环境、胃微生物群、并发症和生存期,这表明口腔微生物群与癌症领域出现了新的热点。我们的研究对口腔微生物群与癌症研究进行了全面分析,发现近年来发表的论文数量有所增加。未来的研究方向将继续关注受癌症影响的口腔微生物群的多样性及其内在联系机制,为肿瘤发生的靶向治疗提供新思路。
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引用次数: 0
CircUCK2 promotes hepatocellular carcinoma development by upregulating UCK2 in a mir-149-5p-dependent manner CircUCK2 以 mir-149-5p 依赖性方式上调 UCK2,从而促进肝细胞癌的发展
Pub Date : 2024-01-20 DOI: 10.1007/s12672-024-00863-y
Minghai Shen, Qinghua Zhang, Wanneng Pan, Bei Wang

Abstract

Background

Circular RNAs (circRNAs) participate in the regulation of Hepatocellular Carcinoma (HCC) progression. The objective of this study was to explore the function and mechanism of circUCK2 in HCC development.

Methods

The RNA levels of circUCK2, miR-149-5p and uridine–cytidine kinase 2 (UCK2) were examined by quantitative real-time polymerase chain reaction (qRT-PCR). EdU incorporation assay and colony formation assay were respectively performed to analyze cell proliferation and colony formation. Wound healing assay and transwell assay were conducted for cell migration and invasion. Flow cytometry was used for cell apoptosis analysis. Western blot assay was conducted to determine the protein levels of E-cadherin, N-cadherin, matrix metallopeptidase 9 (MMP-9) and UCK2. Dual-luciferase reporter assay, RNA immunoprecipitation (RIP) assay and RNA pull-down assay were conducted to confirm the interaction between miR-149-5p and circUCK2 or UCK2. The xenograft model was established to explore the role of circUCK2 in tumor growth in vivo.

Results

CircUCK2 level was elevated in HCC, and circUCK2 depletion suppressed HCC cell proliferation, colony formation, migration and invasion and accelerated cell apoptosis. Mechanistically, circUCK2 could positively modulate UCK2 expression by interacting with miR-149-5p. Furthermore, the repressive effects of circUCK2 knockdown on the malignant behaviors of HCC cells were alleviated by UCK2 overexpression or miR-149-5p inhibition. The promoting effects of circUCK2 overexpression on HCC cell malignancy were alleviated by UCK2 silencing or miR-149-5p introduction. Additionally, circUCK2 knockdown hampered tumor growth in vivo.

Conclusion

CircUCK2 contributed to HCC malignant progression in vitro and in vivo via targeting miR-149-5p/UCK2 axis, demonstrating that circUCK2 might be a novel therapeutic target for HCC.

摘要 背景 环状 RNA(circRNA)参与调控肝细胞癌(HCC)的进展。本研究旨在探讨 circUCK2 在 HCC 发展中的功能和机制。 方法 采用实时定量聚合酶链反应(qRT-PCR)检测 circUCK2、miR-149-5p 和尿苷-胞苷激酶 2(UCK2)的 RNA 水平。EdU掺入试验和集落形成试验分别用于分析细胞增殖和集落形成。伤口愈合试验和透孔试验用于分析细胞迁移和侵袭。流式细胞仪用于细胞凋亡分析。采用 Western 印迹法测定 E-cadherin、N-cadherin、基质金属肽酶 9(MMP-9)和 UCK2 的蛋白水平。为了证实 miR-149-5p 与 circUCK2 或 UCK2 之间的相互作用,进行了双荧光素酶报告实验、RNA 免疫沉淀(RIP)实验和 RNA 下拉实验。建立异种移植模型以探讨 circUCK2 在体内肿瘤生长中的作用。 结果 circUCK2水平在HCC中升高,circUCK2耗竭可抑制HCC细胞增殖、集落形成、迁移和侵袭,并加速细胞凋亡。从机理上讲,circUCK2可通过与miR-149-5p相互作用正向调节UCK2的表达。此外,敲除 circUCK2 对 HCC 细胞恶性行为的抑制作用可通过 UCK2 过表达或抑制 miR-149-5p 得到缓解。UCK2沉默或引入miR-149-5p可减轻circUCK2过表达对HCC细胞恶性行为的促进作用。此外,敲除 circUCK2 会阻碍肿瘤在体内的生长。 结论 CircUCK2通过靶向miR-149-5p/UCK2轴在体外和体内促进了HCC的恶性进展,这表明circUCK2可能是HCC的一个新的治疗靶点。
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引用次数: 0
The role of stromal cells in epithelial–mesenchymal plasticity and its therapeutic potential 基质细胞在上皮-间质可塑性中的作用及其治疗潜力
Pub Date : 2024-01-20 DOI: 10.1007/s12672-024-00867-8

Abstract

The epithelial–mesenchymal transition (EMT) is a critical tumor invasion and metastasis process. EMT enables tumor cells to migrate, detach from their original location, enter the circulation, circulate within it, and eventually exit from blood arteries to colonize in foreign sites, leading to the development of overt metastases, ultimately resulting in death. EMT is intimately tied to stromal cells around the tumor and is controlled by a range of cytokines secreted by stromal cells. This review summarizes recent research on stromal cell-mediated EMT in tumor invasion and metastasis. We also discuss the effects of various stromal cells on EMT induction and focus on the molecular mechanisms by which several significant stromal cells convert from foes to friends of cancer cells to fuel EMT processes via their secretions in the tumor microenvironment (TME). As a result, a better knowledge of the role of stromal cells in cancer cells’ EMT may pave the path to cancer eradication.

摘要 上皮-间质转化(EMT)是肿瘤入侵和转移的关键过程。EMT 使肿瘤细胞迁移,脱离其原来的位置,进入血液循环,在其中循环,并最终从血液动脉流出,在异地定植,导致明显的转移,最终导致死亡。EMT与肿瘤周围的基质细胞密切相关,并受基质细胞分泌的一系列细胞因子控制。本综述总结了近期有关肿瘤侵袭和转移中基质细胞介导的 EMT 的研究。我们还讨论了各种基质细胞对 EMT 诱导的影响,并重点探讨了几种重要的基质细胞通过其在肿瘤微环境(TME)中的分泌物从癌细胞的 "敌人 "变为 "朋友"、助长 EMT 过程的分子机制。因此,更好地了解基质细胞在癌细胞EMT中的作用可能会为根除癌症铺平道路。
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引用次数: 0
Machine learning and experiments identifies SPINK1 as a candidate diagnostic and prognostic biomarker for hepatocellular carcinoma 机器学习和实验确定 SPINK1 为肝细胞癌的候选诊断和预后生物标记物
Pub Date : 2023-12-14 DOI: 10.1007/s12672-023-00849-2
Shiming Yi, Chunlei Zhang, Ming Li, Tianyi Qu, Jiafeng Wang

Machine learning techniques have been widely used in predicting disease prognosis, including cancer prognosis. One of the major challenges in cancer prognosis is to accurately classify cancer types and stages to optimize early screening and detection, and machine learning techniques have proven to be very useful in this regard. In this study, we aimed at identifying critical genes for diagnosis and outcomes of hepatocellular carcinoma (HCC) patients using machine learning. The HCC expression dataset was downloaded from GSE65372 datasets and TCGA datasets. Differentially expressed genes (DEGs) were identified between 39 HCC and 15 normal samples. For the purpose of locating potential biomarkers, the LASSO and the SVM-RFE assays were performed. The ssGSEA method was used to analyze the TCGA to determine whether there was an association between SPINK1 and tumor immune infiltrates. RT-PCR was applied to examine the expression of SPINK1 in HCC specimens and cells. A series of functional assays were applied to examine the function of SPINK1 knockdown on the proliferation of HCC cells. In this study, 103 DEGs were obtained. Based on LASSO and SVM-RFE analysis, we identified nine critical diagnostic genes, including C10orf113, SPINK1, CNTLN, NRG3, HIST1H2AI, GPRIN3, SCTR, C2orf40 and PITX1. Importantly, we confirmed SPINK1 as a prognostic gene in HCC. Multivariate analysis confirmed that SPINK1 was an independent prognostic factor for overall survivals of HCC patients. We also found that SPINK1 level was positively associated with Macrophages, B cells, TFH, T cells, Th2 cells, iDC, NK CD56bright cells, Th1 cells, aDC, while negatively associated with Tcm and Eosinophils. Finally, we demonstrated that SPINK1 expression was distinctly increased in HCC specimens and cells. Functionally, silence of SPINK1 distinctly suppressed the proliferation of HCC cells via regulating Wnt/β-catenin pathway. The evidence provided suggested that SPINK1 may possess oncogenic properties by inducing dysregulated immune infiltration in HCC. Additionally, SPINK1 was identified as a novel biomarker and therapeutic target for HCC.

机器学习技术已被广泛用于预测疾病预后,包括癌症预后。癌症预后的主要挑战之一是对癌症类型和分期进行准确分类,以优化早期筛查和检测,而机器学习技术已被证明在这方面非常有用。在这项研究中,我们的目标是利用机器学习识别肝细胞癌(HCC)患者诊断和预后的关键基因。我们从 GSE65372 数据集和 TCGA 数据集中下载了 HCC 表达数据集。在 39 个 HCC 样本和 15 个正常样本之间发现了差异表达基因(DEGs)。为了找到潜在的生物标记物,进行了 LASSO 和 SVM-RFE 分析。ssGSEA方法用于分析TCGA,以确定SPINK1与肿瘤免疫浸润之间是否存在关联。应用 RT-PCR 检测 SPINK1 在 HCC 标本和细胞中的表达。通过一系列功能检测,研究了SPINK1基因敲除对HCC细胞增殖的影响。本研究共获得 103 个 DEGs。基于LASSO和SVM-RFE分析,我们确定了9个关键诊断基因,包括C10orf113、SPINK1、CNTLN、NRG3、HIST1H2AI、GPRIN3、SCTR、C2orf40和PITX1。重要的是,我们证实 SPINK1 是 HCC 的预后基因。多变量分析证实,SPINK1是影响HCC患者总生存率的独立预后因素。我们还发现,SPINK1水平与巨噬细胞、B细胞、TFH、T细胞、Th2细胞、iDC、NK CD56bright细胞、Th1细胞、aDC呈正相关,而与Tcm和嗜酸性粒细胞呈负相关。最后,我们发现 SPINK1 在 HCC 标本和细胞中的表达明显增加。在功能上,沉默 SPINK1 可通过调节 Wnt/β-catenin 通路明显抑制 HCC 细胞的增殖。所提供的证据表明,SPINK1可能通过诱导HCC中失调的免疫浸润而具有致癌特性。此外,SPINK1 还被确定为 HCC 的新型生物标记物和治疗靶点。
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引用次数: 0
High pre-chemoradiotherapy pan-immune-inflammation value levels predict worse outcomes in patients with stage IIIB/C non-small-cell lung cancer 化放疗前泛免疫炎症值水平较高可预示 IIIB/C 期非小细胞肺癌患者的预后较差
Pub Date : 2023-12-13 DOI: 10.1007/s12672-023-00851-8
Erkan Topkan, Ahmet Kucuk, Emine Elif Ozkan, Duriye Ozturk, Ali Ayberk Besen, Huseyin Mertsoylu, Berrin Pehlivan, Ugur Selek

Background and objectives

We explored the prognostic usefulness of the pan-immune-inflammation value (PIV) in patients with stage IIIB/C non-small-cell lung cancer (NSCLC) who underwent concurrent chemoradiotherapy (CCRT).

Methods and patients

For all patients, the PIV was calculated using platelet (P), monocyte (M), neutrophil (N), and lymphocyte (L) measures obtained on the first day of CCRT: PIV = P × M × N ÷ L. Using receiver operating characteristic (ROC) curve analysis, we searched for the existence of an ideal cutoff that may partition patients into two groups with unique progression-free- (PFS) and overall survival (OS) results. The primary endpoint of this retrospective cohort research was to determine whether there were any significant relationships between pretreatment PIV measures and post-CCRT OS outcomes.

Results

The present research included a total of 807 stage IIIB/C NSCLC patients. According to ROC curve analysis, the ideal PIV cutoff was 516 [area under the curve (AUC): 67.7%; sensitivity: 66.4%; specificity: 66.1%], which divided the whole cohort into two: low PIV (L-PIV: PIV < 516; N = 436) and high PIV (H-PIV: PIV ≥ 516; N = 371). The comparisons between the PIV groups indicated that either the median PFS (9.2 vs. 13.4 months; P < 0.001) or OS (16.7 vs. 32.7 months; P < 0.001) durations in the H-PIV group were substantially inferior to their L-PIV counterpart. Apart from the H-PIV (P < 0.001), the N3 nodal stage (P = 0.006), IIIC disease stage (P < 0.001), and receiving only one cycle of concurrent chemotherapy (P = 0.005) were also determined to be significant predictors of poor PFS (P < 0.05, for each) and OS (P < 0.05, for each) outcomes in univariate analysis. The multivariate analysis findings revealed that all four variables had independent negative impacts on PFS (P < 0.05, for each) and OS (P < 0.05, for each).

Conclusions

The findings of this hypothesis-generating retrospective analysis claimed that the novel PIV was an independent and steadfast predictor of PFS and OS in stage IIIB/C NSCLC patients.

方法和患者对于所有患者,PIV 是使用 CCRT 第一天获得的血小板 (P)、单核细胞 (M)、中性粒细胞 (N) 和淋巴细胞 (L) 测量值计算得出的:PIV = P × M × N ÷ L。通过接收器操作特征(ROC)曲线分析,我们寻找是否存在一个理想的分界点,可将患者分为两组,分别获得独特的无进展生存期(PFS)和总生存期(OS)结果。这项回顾性队列研究的主要终点是确定治疗前 PIV 指标与 CCRT 后 OS 结果之间是否存在显著关系。根据 ROC 曲线分析,理想的 PIV 临界值为 516 [曲线下面积(AUC):67.7%;灵敏度:66.4%;特异性:66.1%],将整个队列分为两种:低 PIV(L-PIV:PIV < 516; N = 436)和高 PIV(H-PIV:PIV ≥ 516; N = 371)。PIV 组之间的比较表明,H-PIV 组的中位 PFS(9.2 个月对 13.4 个月;P <;0.001)或 OS(16.7 个月对 32.7 个月;P <;0.001)持续时间大大低于 L-PIV 组。在单变量分析中,除了H-PIV(P <0.001)外,N3结节分期(P = 0.006)、IIIC疾病分期(P <0.001)和仅接受一个周期的同期化疗(P = 0.005)也被确定为不良PFS(P <0.05,各为0.05)和OS(P <0.05,各为0.05)结果的重要预测因素。多变量分析结果显示,所有四个变量都对PFS(P< 0.05,各为0.05)和OS(P< 0.05,各为0.05)有独立的负面影响。结论这项产生假设的回顾性分析结果表明,新型PIV是IIIB/C期NSCLC患者PFS和OS的独立且稳定的预测因子。
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引用次数: 0
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Hormones and Cancer
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