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Global Population Structure, Virulence Factors and Antibiotic Resistance of Helicobacter pylori: A Pooled Analysis of 4067 Isolates From 76 Countries 幽门螺杆菌的全球种群结构、毒力因素和抗生素耐药性:来自76个国家4067株的汇总分析
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-03-09 DOI: 10.1111/hel.70025
Mengyi Zhu, Xianfeng Xu, Pengpeng Cai, Tianpei Wang, Meng Zhu, Caiwang Yan, Qianglong Pan, Chen Chen, Ying Wu, Guoxin Zhang, Guangfu Jin
<div> <section> <h3> Background</h3> <p><i>Helicobacter pylori</i> (<i>H. pylori</i>) is a common pathogen that has co-evolved with the human host for approximately 100,000 years; however, our understanding of its population structure remains limited. Furthermore, the detailed characteristics of its virulence factors and antibiotic resistance for <i>H. pylori</i> are not yet fully elucidated.</p> </section> <section> <h3> Methods</h3> <p>In this study, we curated a global genome dataset of 4067 <i>H. pylori</i> isolates from 76 countries and explored <i>H. pylori</i> characteristics, including population genetic structure, virulence factors, and antibiotic resistance. We used three approaches (fineSTRUCTURE, ADMIXTURE, and DAPC) to infer the population structure of <i>H. pylori</i>. We investigated the virulence of each isolate by calling genotypes of <i>cagA</i> and <i>vacA</i> and evaluated the correlations of virulence factors with subpopulation. For antibiotic resistance, we identified mutations to determine the genotypic antibiotic resistance. Then we estimated the prevalence of genotypic antibiotic resistance grouped by geographical location, subpopulation, and study period.</p> </section> <section> <h3> Result</h3> <p>We identified 21 subpopulations in 4067 <i>H. pylori</i> isolates, including 20 previously reported subpopulations and a novel subpopulation hspEuropeIsrael, and found that the population structure of <i>H. pylori</i> was geographically restricted. The novel subpopulation hspEuropeIsrael had a higher proportion of less virulent <i>cagA</i> and <i>vacA</i> genotypes compared to other subpopulations. After evaluating the rates of <i>H. pylori</i> genotypic resistance to four antibiotics, we found that the prevalence of genotypic resistance to amoxicillin and metronidazole was > 15% across all five continents. Genotypic resistance to levofloxacin was > 15% on all continents except for Oceania. Additionally, the genotypic resistance rate to clarithromycin was > 15% in Asia, Europe, and Oceania. A trend of increased genotypic resistance over time was observed in several continents during subgroup analyses. Furthermore, we constructed a comprehensive database for <i>H. pylori</i>, named <i>Helicobacter Pylori</i> Encyclopedia for Research (HELPER, http://ccra.njmu.edu.cn/helper).</p> </section> <section> <h3> Conclusion</h3> <p>Our results provide a detailed characterization of <i>H. pylori</i> and extend previous schemas. HELPER serves as an informative and comprehensive database that will be a valuable resource for researchers and lay the foundation for future studies on <i>H. pylori</i>.</p>
幽门螺杆菌(h.p ylori)是一种常见的病原体,已经与人类宿主共同进化了大约10万年;然而,我们对其人口结构的了解仍然有限。此外,幽门螺杆菌的毒力因子和耐药性的详细特征尚未完全阐明。方法收集来自76个国家的4067株幽门螺杆菌的全球基因组数据,探讨幽门螺杆菌的遗传结构、毒力因素和抗生素耐药性等特征。我们使用三种方法(fineSTRUCTURE, ADMIXTURE和DAPC)来推断幽门螺杆菌的群体结构。我们通过调用cagA和vacA的基因型研究了每种分离物的毒力,并评估了毒力因素与亚群的相关性。对于抗生素耐药性,我们鉴定突变以确定基因型抗生素耐药性。然后,我们根据地理位置、亚群和研究期间估计基因型抗生素耐药的患病率。结果从4067株幽门螺杆菌分离株中鉴定出21个亚群,其中包括20个先前报道的亚群和一个新的欧洲以色列亚群,发现幽门螺杆菌种群结构受地理限制。与其他亚群相比,新的欧洲以色列亚群具有更高比例的低毒性cagA和vacA基因型。在评估了幽门螺杆菌对四种抗生素的基因型耐药率后,我们发现在所有五大洲,对阿莫西林和甲硝唑的基因型耐药率为15%。除大洋洲外,各大洲对左氧氟沙星的基因型耐药率为15%。此外,亚洲、欧洲和大洋洲对克拉霉素的基因型耐药率为15%。在亚群分析中,在几个大陆观察到基因型耐药随时间增加的趋势。此外,我们构建了一个全面的幽门螺杆菌数据库,命名为幽门螺杆菌研究百科全书(HELPER, http://ccra.njmu.edu.cn/helper)。结论本研究结果提供了幽门螺旋杆菌的详细特征,并扩展了以往的模式。HELPER是一个信息丰富的综合性数据库,为今后的幽门螺旋杆菌研究奠定了基础。
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引用次数: 0
Proteomic Profiling of Extracellular Vesicles Reveals Potential Biomarkers for Helicobacter pylori Infection and Gastric Cancer 细胞外囊泡的蛋白质组学分析揭示幽门螺杆菌感染和胃癌的潜在生物标志物
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-03-03 DOI: 10.1111/hel.70022
Phawinee Subsomwong, Krisana Asano, Junko Akada, Takashi Matsumoto, Akio Nakane, Yoshio Yamaoka

Background

Helicobacter pylori (H. pylori) has been identified as a type I carcinogen and contributes to a high rate of gastric cancer (GC), especially in Eastern Asia. Extracellular vesicles (EVs) have the potential to be used to detect various cancer types and diseases. However, the protein markers in EVs for the prognosis of H. pylori infection and GC are unknown. We aim to identify the proteins within EVs derived from a gastric epithelial cell line (AGS) infected with H. pylori by using LC-MS/MS.

Materials and Methods

EVs were isolated from AGS cells infected with high- and low-virulence H. pylori (strains TN2wt and Tx30a) by ultracentrifugation. Proteins within these EVs were identified and analyzed for potential marker candidates through bioinformatics. Proteins in H. pylori-derived EVs (HpEVs) from bacterial culture supernatant and HpEVs derived from H. pylori-infected AGS cells were elucidated.

Results

Differentially expressed proteins by proteomic analysis in AGSEVs-Tx30a vs. AGSEVs-noninfected (NI) and AGSEVs-TN2wt vs. AGSEVs-NI were 107 and 55 proteins, respectively. Bioinformatics of these proteomes revealed that essential proteins for H. pylori survival and pathogenicity including outer membrane proteins, metabolism-related, host cell infection-related, and virulence-related proteins were observed in HpEVs. Interestingly, EVs derived from AGS cells infected with H. pylori TN2wt significantly contained multiple proteins related to GC (ATP6V0A1, GAPDH, HINT1, LYZ, and RBX1).

Conclusion

This study provides a comprehensive protein profile of EVs from H. pylori-infected AGS cells and HpEVs, which could serve as liquid-based biomarkers in the future for screening H. pylori infection, especially GC-related.

背景幽门螺杆菌(h.p ylori)已被确定为I型致癌物,是导致胃癌(GC)高发的原因,尤其是在东亚地区。细胞外囊泡(EVs)具有用于检测各种癌症类型和疾病的潜力。然而,EVs中与幽门螺杆菌感染和GC预后相关的蛋白标志物尚不清楚。我们的目的是利用LC-MS/MS技术鉴定幽门螺杆菌感染的胃上皮细胞系(AGS)衍生的ev中的蛋白质。材料与方法用超离心法从感染高、低毒力幽门螺杆菌(TN2wt和Tx30a)的AGS细胞中分离出ev。通过生物信息学对这些ev中的蛋白质进行鉴定和分析,以寻找潜在的候选标记物。研究了细菌培养上清中幽门螺杆菌源性ev (hpev)和幽门螺杆菌感染AGS细胞中hpev的蛋白表达。结果通过蛋白质组学分析,agsev - tx30a与agsev -non - infected (NI)、agsev - tn2wt与agsev -NI分别有107个和55个蛋白表达差异。这些蛋白质组学的生物信息学研究表明,hpev中存在幽门螺杆菌生存和致病性的必需蛋白,包括外膜蛋白、代谢相关蛋白、宿主细胞感染相关蛋白和毒力相关蛋白。有趣的是,来自幽门螺杆菌TN2wt感染的AGS细胞的ev显著含有多种与GC相关的蛋白(ATP6V0A1、GAPDH、HINT1、LYZ和RBX1)。结论本研究提供了幽门螺杆菌感染AGS细胞和hpev中EVs的全面蛋白图谱,可作为未来筛选幽门螺杆菌感染,特别是gc相关感染的液体生物标志物。
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引用次数: 0
Global Prevalence of Helicobacter pylori Infection-Associated Gastric Preneoplastic Lesions in Pediatric Patients: A Systematic Review and Meta-Analysis 儿童幽门螺杆菌感染相关胃肿瘤前病变的全球患病率:一项系统综述和荟萃分析
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-28 DOI: 10.1111/hel.70021
Mohammed Awadh Abdun, Lu Xu, Xiao-Ting Li, Amr Mekky, Maher Al Hussan, Ezaldin M. I. Abuheit, Chen Zhang, Ishtiaq Ur Rahman, Miao Yu, Hafiz Muhammad Sohail Sarwar, Bin-Bin Yan, Jia-Bei Xie, Bo-Wei Liu, Song-Ze Ding

Background

Helicobacter pylori (H. pylori) is the major cause of gastric mucosal precancerous lesions in adulthood, but its impact on pediatric patients remains unclear. We aimed to investigate H. pylori-induced gastric precancerous lesions in children and adolescents globally and analyze their influencing factors for related disease management and prevention.

Materials and Methods

We conducted a comprehensive literature search in major databases to identify studies including pediatric patients with gastric precancerous lesions and H. pylori infection status. Prevalence rates were computed using random-effects or fixed-effect models. A stratified analysis was conducted based on location, age, universal health coverage (UHC), and publication time.

Results

Among the 3359 relevant articles screened, 24 studies (7036 participants) met the inclusion criteria. The overall prevalence of precancerous lesions in H. pylori-infected patients was 17.2%, in which atrophic gastritis (AG) and intestinal metaplasia (IM) were 13.5% and 3.6%, respectively. Precancerous lesion rates in infected individuals across different regions were as follows: Africa at 33.8% (AG: 32.6%), Latin America at 22.1% (AG: 17.9%, IM: 4.0%), Asia at 18.1% (AG: 12.4%, IM: 4.4%, Dysplasia: 1.2%), and Europe at 6.3% (AG: 4.3%, IM: 1.7%). Infected adolescents (> 10 years) exhibited a higher prevalence of precancerous lesions than younger children (≤ 10 years) at 14.2% (AG: 9.7%, IM: 2.9%) versus 3.4% (AG: 2.3%, IM: 1.1%), respectively. The prevalence of precancerous lesions in infected patients was higher in areas with low-medium UHC compared with high UHC (24.0% vs. 12.5%).

Conclusions

H. pylori infection causes significant gastric mucosal precancerous lesions in pediatric patients, representing a major concern for this population and a previously neglected area. Future in-depth investigations and proper management for related disease prevention are warranted.

Trial Registration

 PROSPERO number: CRD42023424683

背景幽门螺杆菌(h.p ylori)是成人胃粘膜癌前病变的主要原因,但其对儿科患者的影响尚不清楚。我们旨在调查幽门螺旋杆菌引起的全球儿童和青少年胃癌前病变,并分析其影响因素,以便进行相关疾病的管理和预防。材料和方法我们在主要数据库中进行了全面的文献检索,以确定包括胃癌前病变和幽门螺杆菌感染状态的儿科患者的研究。使用随机效应或固定效应模型计算患病率。根据地理位置、年龄、全民健康覆盖(UHC)和出版时间进行分层分析。结果在筛选的3359篇相关文献中,24篇研究(7036名受试者)符合纳入标准。幽门螺杆菌感染患者癌前病变的总体患病率为17.2%,其中萎缩性胃炎(AG)和肠化生(IM)分别为13.5%和3.6%。不同地区感染个体的癌前病变率如下:非洲为33.8% (AG: 32.6%),拉丁美洲为22.1% (AG: 17.9%, IM: 4.0%),亚洲为18.1% (AG: 12.4%, IM: 4.4%,不典型增生:1.2%),欧洲为6.3% (AG: 4.3%, IM: 1.7%)。受感染的青少年(≤10岁)的癌前病变患病率高于年幼儿童(≤10岁),分别为14.2% (AG: 9.7%, IM: 2.9%)和3.4% (AG: 2.3%, IM: 1.1%)。中低UHC地区感染患者的癌前病变患病率高于高UHC地区(24.0%对12.5%)。结论幽门螺旋杆菌感染可导致儿童患者胃粘膜癌前病变,这是该人群关注的主要问题,也是一个以前被忽视的领域。未来有必要对相关疾病的预防进行深入调查和适当管理。试验注册号:CRD42023424683
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引用次数: 0
The Gastric Microbiota Invade the Lamina Propria in Helicobacter pylori-Associated Gastritis and Precancer 幽门螺杆菌相关性胃炎和癌前病变中胃微生物群侵入固有层的研究
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-26 DOI: 10.1111/hel.70016
Harriet J. Giddings, Ana Teodósio, Jordanne Jones, Jack L. McMurray, Kelly Hunter, Riad Alame, Isaac Gardiner, Zainab Abdawn, William Butterworth, Ian R. Henderson, Jeffrey A. Cole, Claire D. Shannon-Lowe, Amanda E. Rossiter-Pearson

Background

Stomach cancer is the fourth leading cause of cancer-related deaths worldwide. Helicobacter pylori is the main risk factor for gastric adenocarcinoma (GAC), yet the precise mechanism underpinning this association remains controversial. Gastric intestinal metaplasia (GIM) represents the precancerous stage and follows H. pylori-associated chronic gastritis (CG). Sequencing studies have revealed fewer H. pylori and more non-H. pylori bacteria in GAC. However, the spatial organization of the gastric microbiota in health and disease is unknown.

Materials and Methods

Here, we have combined RNA in situ hybridization and immunohistochemistry to detect H. pylori, non-H. pylori bacteria, and host cell markers (E-cadherin, Mucins 5AC and 2) on tissue sections from patients with CG (n = 15) and GIM (n = 17).

Results

Quantitative analysis of whole slide scans revealed significant correlations of H. pylori and other bacteria in CG and GIM. In contrast to sequencing studies, significantly fewer non-H. pylori bacteria were detected in H. pylori-negative patients. Importantly, whilst H. pylori exclusively colonized the gastric glands, non-H. pylori bacteria invaded the lamina propria in 6/9 CG and 8/10 GIM H. pylori-positive patients. A rapid and cost-effective modified Gram stain was used to confirm these findings and enabled detection of non-H. pylori bacteria in GIM samples.

Conclusions

The invasion of the gastric lamina propria by non-H. pylori bacteria during H. pylori-associated CG and GIM represents an overlooked phenomenon in cancer progression. Further work must determine the mechanisms underlying the synergistic roles of H. pylori and other bacteria in carcinogenesis. This observation should redirect attempts to prevent, diagnose, and treat GAC.

胃癌是全球癌症相关死亡的第四大原因。幽门螺杆菌是胃腺癌(GAC)的主要危险因素,但这种关联的确切机制仍有争议。胃肠化生(GIM)代表癌前阶段,紧随幽门螺杆菌相关慢性胃炎(CG)。测序研究显示幽门螺杆菌较少,非幽门螺杆菌较多。GAC中的幽门螺杆菌。然而,胃微生物群在健康和疾病中的空间组织是未知的。材料和方法本研究采用RNA原位杂交和免疫组化相结合的方法检测幽门螺杆菌、非幽门螺杆菌和非幽门螺杆菌。在CG (n = 15)和GIM (n = 17)患者的组织切片上发现了幽门螺杆菌和宿主细胞标记物(E-cadherin, Mucins 5AC和2)。结果全片扫描定量分析显示幽门螺杆菌和其他细菌在CG和GIM中有显著相关性。与测序研究相比,非h。幽门螺杆菌阴性患者中检出幽门螺杆菌。重要的是,幽门螺杆菌只在胃腺中定植,而非幽门螺杆菌。6/9 CG和8/10 GIM幽门螺杆菌阳性患者幽门螺杆菌侵入固有层。一种快速且经济有效的革兰氏染色法证实了这些发现,并使非h。幽门螺杆菌。结论非h - t细胞对胃固有层的侵袭。幽门螺杆菌在幽门螺杆菌相关的CG和GIM中代表了癌症进展中被忽视的现象。进一步的研究必须确定幽门螺杆菌和其他细菌在致癌作用中的协同作用机制。这一观察结果应该重新引导预防、诊断和治疗GAC的尝试。
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引用次数: 0
Rebound of Reflux-Related Symptoms After Helicobacter pylori Eradication in Patients With Gastroesophageal Reflux Disease: A Prospective Randomized Study 胃食管反流病患者根除幽门螺杆菌后反流相关症状的反弹:前瞻性随机研究
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-26 DOI: 10.1111/hel.70023
Kai-Yu Hu, Ping-Huei Tseng, Jyh-Ming Liou, Chia-Hung Tu, Chien-Chuan Chen, Yi-Chia Lee, Han-Mo Chiu, Ming-Shiang Wu

Background/Purpose

We aimed to assess the effects of Helicobacter pylori (H. pylori) eradication on the rebound of reflux-related symptoms among gastroesophageal reflux disease (GERD) patients.

Methods

This prospective randomized study recruited patients with typical reflux symptoms and reflux esophagitis on esophagogastroduodenoscopy (NCT02934152). Patients positive for H. pylori via a urea breath test (UBT) were randomly assigned to receive bacterial eradication with triple therapy for 2 weeks either before or after proton-pump inhibitor (PPI) treatment for 4 weeks. Follow-up was implemented with serial GerdQ evaluation and a subsequent UBT. The primary outcome was the incidence rates of symptom rebound between patients with and without H. pylori infection. The secondary outcomes included the severity of symptom rebound, incidence rates of symptom rebound, and successful eradication rates between the early and late eradication groups.

Results

A total of 248 patients were enrolled, of whom 107 (43.1%) tested positive for H. pylori infection. All patients with and without concurrent H. pylori infection had significant symptom improvement over the entire treatment. Patients with H. pylori infection had significantly lower rates of symptom rebound (19.8% vs. 34.2%, p = 0.034) and rebound severity (1.8 ± 0.7 vs. 2.8 ± 1.6, p = 0.031) 4 weeks after eradication and PPI treatment than those without. The incidence rates of symptom rebound and successful eradication rates were not significantly different between the early and late eradication groups.

Conclusions

GERD patients with concurrent H. pylori infection were less susceptible to symptom rebound after H. pylori eradication compared to those without.

Trial Registration

ClinicalTrial.gov (NCT02934152)

背景/目的我们旨在评估幽门螺杆菌根除对胃食管反流病(GERD)患者反流相关症状反弹的影响。方法本前瞻性随机研究招募食管胃十二指肠镜检查有典型反流症状和反流性食管炎的患者(NCT02934152)。通过尿素呼气试验(UBT)检测幽门螺杆菌阳性的患者被随机分配在质子泵抑制剂(PPI)治疗4周之前或之后接受2周的细菌根除三联疗法。通过连续GerdQ评估和随后的UBT进行随访。主要观察指标是有无幽门螺杆菌感染的患者之间症状反弹的发生率。次要结局包括症状反弹的严重程度、症状反弹的发生率以及早期和晚期根除组之间的根除成功率。结果共纳入248例患者,其中幽门螺杆菌感染阳性107例(43.1%)。所有合并或不合并幽门螺杆菌感染的患者在整个治疗过程中症状均有显著改善。幽门螺杆菌感染患者在根除和PPI治疗4周后症状反跳率(19.8% vs. 34.2%, p = 0.034)和反跳严重程度(1.8±0.7 vs. 2.8±1.6,p = 0.031)显著低于未治疗的患者。症状反弹发生率和根除成功率在早期和晚期根除组之间无显著差异。结论伴有幽门螺杆菌感染的胃食管反流患者在根除幽门螺杆菌后较未感染幽门螺杆菌的患者更不易出现症状反弹。临床试验注册网站(NCT02934152)
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引用次数: 0
Vonoprazan-Amoxicillin Dual Therapy Versus Drug Sensitivity-Based Individualized Therapy as a Rescue Regimen for Helicobacter pylori Infection: A Multicenter, Randomized Controlled Trial vonoprazan -阿莫西林双重治疗与基于药物敏感性的个体化治疗作为幽门螺杆菌感染的拯救方案:一项多中心,随机对照试验
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-25 DOI: 10.1111/hel.70009
Yu-xiang Liu, Han-ning Liu, Heng-qi Liu, Ying-ying Yang, Hong-li Cui, Li-lin Fan, Wen-jing Sun, Hao Mei, Xing-wei Wang, Guo Yan, Chun-hui Lan

Objective

Vonoprazan is a novel potassium-competitive acid blocker (P-CAB) that offers several advantages, such as fast onset time and strong acid inhibition, in the treatment of Helicobacter pylori infection. This study aims to evaluate the efficacy, adverse reactions, and compliance of the 14-day vonoprazan-amoxicillin dual therapy versus drug sensitivity-based individualized therapy in the retreatment of H. pylori infection.

Methods

This multicenter, open-label, randomized, controlled non-inferiority study enrolled 240 adult patients who previously failed anti-H. pylori treatment. These patients were randomly assigned to receive the 14-day vonoprazan-amoxicillin dual therapy or drug sensitivity-based individualized therapy. The primary outcome was the eradication rate, and the secondary outcomes mainly included adverse events, patient compliance, antibiotic resistance rates, and risk factors that affected the eradication rate.

Results

The intention-to-treat (ITT) and per-protocol (PP) analyses revealed that the eradication rates for the vonoprazan-amoxicillin dual therapy and drug sensitivity-based individualized therapy were comparably high, with rates of 87.50% and 83.33%, respectively. Furthermore, the vonoprazan-amoxicillin dual therapy fulfilled the criteria for the non-inferiority test, when compared to individualized therapy. The incidence of adverse reactions was significantly lower in the vonoprazan-amoxicillin dual therapy group. Both groups showed similarly good compliance and comparable rates of antibiotic resistance. The previous treatment with a clarithromycin-containing regimen was identified as an independent risk factor for clarithromycin resistance.

Conclusion

The 14-day vonoprazan-amoxicillin dual therapy exhibits high eradication rates and low incidence of adverse reactions in retreated patients, indicating its effectiveness and safety as a rescue regimen for patients with H. pylori infection.

目的Vonoprazan是一种治疗幽门螺杆菌感染的新型钾竞争性酸阻滞剂(P-CAB),具有起效时间快、抑酸作用强等优点。本研究旨在评估14天vonoprazan-amoxicillin双重治疗与基于药物敏感性的个体化治疗在幽门螺杆菌感染再治疗中的疗效、不良反应和依从性。方法:这项多中心、开放标签、随机对照、非劣效性研究纳入了240例既往抗h抗体失败的成年患者。螺杆菌治疗。这些患者被随机分配接受为期14天的vonoprazan-amoxicillin双重治疗或基于药物敏感性的个体化治疗。主要终点为根除率,次要终点主要包括不良事件、患者依从性、抗生素耐药率和影响根除率的危险因素。结果意向治疗(ITT)和方案治疗(PP)分析显示,vonoprazan-阿莫西林双重治疗和基于药物敏感性的个体化治疗的根除率均较高,分别为87.50%和83.33%。此外,与个体化治疗相比,vonoprazan-amoxicillin双重治疗符合非劣效性测试的标准。vonoprazan-amoxicillin双重治疗组的不良反应发生率明显较低。两组均表现出相似的良好依从性和相似的抗生素耐药率。先前使用含克拉霉素方案的治疗被确定为克拉霉素耐药的独立危险因素。结论vonoprazan-阿莫西林联合治疗14 d幽门螺杆菌感染患者的根除率高,不良反应发生率低,是一种有效、安全的治疗方案。
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引用次数: 0
The Accuracy of Melting Curve–Based Multiplex Real-Time PCR for Diagnosing Helicobacter pylori Resistance to Clarithromycin and Levofloxacin in Stool Specimens 熔融曲线多重实时荧光定量PCR诊断粪便标本中幽门螺杆菌对克拉霉素和左氧氟沙星耐药的准确性
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-11 DOI: 10.1111/hel.70012
Youhua Wang, Xiaoling Gong, Qirui Lai, Hui Fang, Xiyin Yang, Xuan Li, Dong Sheng Liu, Yong Xie

Aims

This study evaluates the accuracy of melting curve–based multiplex real-time PCR (multiplex rt-PCR) on stool samples for diagnosing antibiotic resistance in Helicobacter pylori (H. pylori) compared to E-test and sequencing.

Methods

Gastric biopsies and stool samples were collected from 385 H. pylori-infected patients. A total of 325 strains were isolated, and genomic DNA was extracted from all 385 stool samples. E-tests were conducted to detect phenotypic resistance for clarithromycin and levofloxacin. Sanger sequencing and multiplex rt-PCR were employed to identify H. pylori 23S rRNA and GyrA mutations.

Results

E-test results indicated that 203 (62.5%) were susceptible to both clarithromycin and levofloxacin, 33 (10.2%) exhibited mono-resistance to clarithromycin, 48 (14.8%) showed mono-resistance to levofloxacin, and 41 (12.6%) had dual resistance to both antibiotics. Compared to E-test results, the sensitivity and specificity of the multiplex rt-PCR method for detecting clarithromycin resistance mutation were 93.2 (95% CI 84.3–97.5) and 87.1% (95% CI 82.2–90.9), respectively. For levofloxacin resistance mutation, the multiplex rt-PCR method showed a sensitivity of 80.7 (95% CI 70.3–88.3) and a specificity of 93.0% (95% CI 88.7–95.8). Compared to Sanger sequencing, the sensitivity and specificity of the multiplex rt-PCR method for detecting clarithromycin resistance mutation were 95.8 (95% CI 90.0–98.4) and 96.0% (95% CI 92.6–98.0), respectively. For levofloxacin resistance mutation, the multiplex rt-PCR method showed a sensitivity of 91.3% (95% CI, 83.1–95.9) and a specificity of 96.1% (95% CI, 92.7–98.0).

Conclusion

Genotypic methods, including Sanger sequencing and multiplex rt-PCR, were rapid and reliable for diagnosing clarithromycin and levofloxacin resistance in the stool samples.

目的与E-test和测序技术相比,评价基于熔融曲线的多重实时荧光定量PCR (multiplex rt-PCR)在粪便样品中诊断幽门螺杆菌(h.p ylori)耐药性的准确性。方法对385例幽门螺旋杆菌感染患者进行胃活检和粪便标本采集。共分离出325株菌株,并从所有385份粪便样本中提取基因组DNA。采用e -试验检测克拉霉素和左氧氟沙星的表型耐药。采用Sanger测序和多重rt-PCR检测幽门螺杆菌23S rRNA和GyrA突变。结果e检验结果显示,对克拉霉素和左氧氟沙星均敏感的203例(62.5%),对克拉霉素单耐药的33例(10.2%),对左氧氟沙星单耐药的48例(14.8%),对两种抗生素双耐药的41例(12.6%)。与e检验结果相比,多重rt-PCR检测克拉霉素耐药突变的敏感性为93.2 (95% CI 84.3 ~ 97.5),特异性为87.1% (95% CI 82.2 ~ 90.9)。对于左氧氟沙星耐药突变,多重rt-PCR方法的敏感性为80.7 (95% CI 70.3 ~ 88.3),特异性为93.0% (95% CI 88.7 ~ 95.8)。与Sanger测序相比,多重rt-PCR检测克拉霉素耐药突变的敏感性为95.8 (95% CI 90.0 ~ 98.4),特异性为96.0% (95% CI 92.6 ~ 98.0)。对于左氧氟沙星耐药突变,多重rt-PCR方法的敏感性为91.3% (95% CI, 83.1 ~ 95.9),特异性为96.1% (95% CI, 92.7 ~ 98.0)。结论Sanger测序和多重rt-PCR等基因分型方法可快速、可靠地诊断粪便样品中的克拉霉素和左氧氟沙星耐药性。
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引用次数: 0
Interpretation the Results of Eradicating Helicobacter pylori Infection Causing Colorectal Cancer Could Be Cautious 对根除导致结直肠癌的幽门螺杆菌感染结果的解读
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-10 DOI: 10.1111/hel.70017
Lo-Yip Yu, Yang-Che Kuo, Ying-Chun Lin, Kuang-Chun Hu
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引用次数: 0
Is Tailored Bismuth Quadruple Therapies (With Clarithromycin or Furazolidone) Based on Fecal Molecular Susceptibility Testing in First-Line Helicobacter pylori Eradication Treatment More Effective? A Three-Arm, Multicenter Randomized Clinical Trial 基于粪便分子药敏试验的定制铋四联疗法(克拉霉素或呋喃唑酮)在一线幽门螺杆菌根除治疗中更有效吗?一项三组、多中心随机临床试验
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-09 DOI: 10.1111/hel.70018
Zhengchen Yu, Xiaochen Liu, Jincheng Qiao, Wenjuan Shen, Xingwei Mao, Guochun Lou, Yan Li, Ziming Xie, Jun Ye

Background

Rising antimicrobial resistance has significantly challenged the eradication rates of Helicobacter pylori. Due to its invasive nature, susceptibility testing based on endoscopic biopsy is controversial, while few studies have focused on the efficacy of tailored bismuth quadruple therapies (BQT) based on fecal susceptibility testing as a first-line treatment.

Methods

In this multicenter study, 598 H. pylori-positive patients without previous eradication treatment were recruited and randomly assigned to three groups: empirical BQT, BQT-tailored based on the history of clarithromycin use and tailored based on fecal molecular susceptibility testing where furazolidone was substituted for clarithromycin when there was clinical or laboratory evidence of clarithromycin resistance. This study defines BQT as regimens comprising rabeprazole, colloidal bismuth, amoxicillin, and one additional antibiotic (furazolidone or clarithromycin). The study assessed eradication rates using intention-to-treat (ITT), modified intention-to-treat (mITT), and per-protocol (PP) analyses.

Results

The eradication rates of three groups were 82.00%, 80.90%, and 87.44% in the ITT analysis; 82.41%, 83.42%, and 89.23% in the mITT analysis; and 85.86%, 87.50%, and 94.57% in the PP analysis, respectively. Tailored BQT based on fecal susceptibility testing was not inferior to empirical BQT (all p values for noninferiority < 0.001) and demonstrated greater efficacy in the PP analysis (difference [95% CI]: 7.07% [0.90%, 13.25%]). The incidence of adverse events and treatment compliance did not differ significantly among the groups.

Conclusion

Tailored BQT based on fecal susceptibility testing is an effective regimen for H. pylori eradication, with no increase in adverse events or treatment noncompliance compared with empirical BQT. Therefore, we recommend tailored BQT based on fecal susceptibility testing as a first-line treatment.

Trial Registration

EudraCT number: NCT05718609; ClinicalTrials.gov

背景:不断上升的抗菌素耐药性极大地挑战了幽门螺杆菌的根除率。由于其侵入性,基于内镜活检的药敏检测存在争议,而很少有研究关注基于粪便药敏检测的定制铋四联疗法(BQT)作为一线治疗的有效性。方法在这项多中心研究中,招募598例既往未接受根除治疗的幽门螺旋杆菌阳性患者,随机分为三组:经经验BQT组、根据克拉霉素使用史量身定制的BQT组和根据粪便分子药敏试验量身定制的BQT组,当有临床或实验室证据表明克拉霉素耐药时,用呋喃唑酮代替克拉霉素。本研究将BQT定义为由雷贝拉唑、胶体铋、阿莫西林和一种附加抗生素(呋喃唑酮或克拉霉素)组成的方案。该研究使用意向治疗(ITT)、改良意向治疗(mITT)和每个方案(PP)分析来评估根除率。结果ITT分析3组的根除率分别为82.00%、80.90%和87.44%;mITT分析分别为82.41%、83.42%和89.23%;在PP分析中分别为85.86%、87.50%和94.57%。基于粪便敏感性测试的量身定制BQT并不逊于经验性BQT(所有p值均为非劣效性<; 0.001),并且在PP分析中显示出更大的疗效(差异[95% CI]: 7.07%[0.90%, 13.25%])。组间不良事件发生率和治疗依从性无显著差异。结论基于粪便药敏试验的定制BQT是根除幽门螺杆菌的有效方案,与经验性BQT相比,不良事件和治疗不依从性没有增加。因此,我们推荐基于粪便敏感性测试的量身定制BQT作为一线治疗。试验注册稿号:NCT05718609;ClinicalTrials.gov
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引用次数: 0
Advances in Helicobacter pylori Antimicrobial Resistance Detection: From Culture-Based to Multi-Omics-Based Technologies 幽门螺杆菌耐药性检测进展:从基于培养到基于多组学技术
IF 4.3 2区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2025-02-09 DOI: 10.1111/hel.70007
Zupeng Kuang, Yuwei Wu, Xinqiang Xie, Xinyu Zhao, Huiyuan Chen, Lei Wu, He Gao, Hui Zhao, Tingting Liang, Jumei Zhang, Ying Li, Qingping Wu

Helicobacter pylori (H. pylori), a proven carcinogenic microbe, necessitates antimicrobial treatment once infected. However, H. pylori worldwide currently faces serious antibiotic resistance (AMR), requiring infected patients to undergo antibiotic susceptibility testing (AST) to guide therapy. Currently, the recommended ASTs for H. pylori are culture-based methods, which are time-consuming, complicated, and expensive, impeding their widespread application. With in-depth researches on the AMR mechanisms of H. pylori, specific gene mutations and novel proteins have been confirmed as the cause of AMR and can serve as targets of ASTs. Accordingly, molecular biology detection has been developed and tremendously shortened the time and reduced difficulty of AST. However, these assays still struggle to meet the enormous testing demand and need for even faster, simpler, and more accurate methods. In recent years, researchers have developed various new platforms based on biosensors, transcriptomics, proteomics, and single-cell analysis. This review introduces the AMR mechanisms of H. pylori and summarizes the current ASTs from the working principles to application characteristics. Additionally, we draw attention to the potentially applicable techniques for AST of H. pylori from DNA, RNA, protein, and cell perspectives. By systematically recapitulating the past, present, and future of AST for H. pylori, this review provides valuable insights for developing novel assays.

幽门螺杆菌(h.p ylori)是一种被证实致癌的微生物,一旦感染就必须进行抗菌治疗。然而,幽门螺杆菌目前在世界范围内面临严重的抗生素耐药性(AMR),需要感染患者进行抗生素敏感性试验(AST)来指导治疗。目前推荐的检测幽门螺杆菌的ast是基于培养的方法,耗时、复杂、昂贵,阻碍了其广泛应用。随着对幽门螺杆菌AMR机制的深入研究,特定的基因突变和新型蛋白已被证实是引起AMR的原因,并可作为ast的靶点。因此,分子生物学检测的发展大大缩短了AST的时间和降低了AST的难度。然而,这些检测方法仍然难以满足巨大的检测需求,需要更快、更简单、更准确的方法。近年来,研究人员开发了各种基于生物传感器、转录组学、蛋白质组学和单细胞分析的新平台。本文介绍了幽门螺杆菌的抗菌素耐药性机制,并从工作原理到应用特点对目前的ast进行了综述。此外,我们提请注意从DNA、RNA、蛋白质和细胞的角度对幽门螺杆菌AST的潜在适用技术。通过系统地总结幽门螺杆菌AST的过去、现在和未来,本综述为开发新的检测方法提供了有价值的见解。
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引用次数: 0
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Helicobacter
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