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Hepatocellular carcinoma and AIM2: Therapeutic potential through regulation of autophagy and macrophage polarization 肝细胞癌与 AIM2:通过调节自噬和巨噬细胞极化的治疗潜力。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-09-02 DOI: 10.1002/iid3.70002
Shuangshuang Xie, Cuiyun Wang, Xiaoyan Liu, Cheng Li, Jinhong Yu, Shumin Ma, Qiang Li, Wenjun Du

Objective

Hepatocellular carcinoma (HCC) poses a significant challenge to global health. Its pathophysiology involves interconnected processes, including cell proliferation, autophagy, and macrophage polarization. However, the role of Absent in Melanoma 2 (AIM2) in HCC remains elusive.

Methods

The expression of AIM2 in Huh-7 and Hep3B cell lines was manipulated and cell proliferation, autophagy, apoptosis, and migration/invasion, together with the polarization of M2 macrophages, were evaluated. The markers of autophagy pathway, LC3B, Beclin-1, and P62, underwent examination through Western blot analysis. An autophagy inhibitor, 3-MA, was used to measured the role of autophagy in HCC. Finally, the effect of AIM2 overexpression on HCC was further evaluated using a subcutaneous tumor model in nude mice.

Results

Our results established that AIM2 overexpression inhibits HCC cell proliferation, migration, and invasion while promoting apoptosis and autophagy. Conversely, knockdown of AIM2 engendered opposite effects. AIM2 overexpression was correlated with reduced M2 macrophage polarization. The autophagy inhibitor substantiated AIM2's role in autophagy and identified its downstream impact on cell proliferation, migration, invasion, and macrophage polarization. In the in vivo model, overexpression of AIM2 led to the inhibition of HCC tumor growth.

Conclusion

The findings underscore AIM2's crucial function in modulating major biological processes in HCC, pointing to its potential as a therapeutic target. This study inaugurally demonstrated that AIM2 activates autophagy and influences macrophage polarization, playing a role in liver cancer progression.

目的:肝细胞癌(HCC)对全球健康构成重大挑战。其病理生理学涉及相互关联的过程,包括细胞增殖、自噬和巨噬细胞极化。然而,Absent in Melanoma 2(AIM2)在HCC中的作用仍然难以捉摸:方法:操纵 AIM2 在 Huh-7 和 Hep3B 细胞系中的表达,评估细胞增殖、自噬、凋亡、迁移/侵袭以及 M2 巨噬细胞的极化。自噬途径的标志物 LC3B、Beclin-1 和 P62 通过 Western 印迹分析进行了检测。自噬抑制剂 3-MA 被用来测量自噬在 HCC 中的作用。最后,利用裸鼠皮下肿瘤模型进一步评估了 AIM2 过表达对 HCC 的影响:结果:我们的研究结果表明,AIM2 过表达可抑制 HCC 细胞的增殖、迁移和侵袭,同时促进细胞凋亡和自噬。相反,敲除 AIM2 则会产生相反的效果。AIM2 的过表达与 M2 巨噬细胞极化的减少有关。自噬抑制剂证实了AIM2在自噬中的作用,并确定了它对细胞增殖、迁移、侵袭和巨噬细胞极化的下游影响。在体内模型中,过表达 AIM2 可抑制 HCC 肿瘤的生长:结论:研究结果强调了 AIM2 在调节 HCC 主要生物学过程中的关键功能,并指出了其作为治疗靶点的潜力。这项研究首次证明了 AIM2 可激活自噬并影响巨噬细胞的极化,在肝癌进展中发挥作用。
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引用次数: 0
The preventive and therapeutic role of Lactobacillus spp. in in vitro model of inflammation via affecting autophagy signaling pathway 乳酸杆菌通过影响自噬信号通路在体外炎症模型中的预防和治疗作用。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-27 DOI: 10.1002/iid3.1336
Fatemeh Haririzadeh Jouriani, Mahnaz Torfeh, Mahdi Torkamaneh, Amin Sepehr, Mahdi Rohani, Shadi Aghamohammad

Background

Intestinal inflammation has various causes and leads to some inflammatory diseases, of which autophagy pathway dysfunction could be considered as one of them. Probiotics could have a positive effect on reducing inflammation by activating the autophagy pathway. To evaluate the precise effects of probiotics as preventive and therapeutic agents to control the symptoms of inflammatory diseases, we aimed to investigate the efficacy of Lactobacillus spp. in regulating the autophagy signaling pathway.

Methods

A quantitative real-time polymerase chain reaction assay was used to analyze the expression of autophagy genes involved in the formation of phagophores, autophagosomes, and autolysosomes after exposing the HT-29 cell line to sonicated pathogens and adding Lactobacillus spp. before, after, and simultaneously with inflammation. A cytokine assay was also accomplished to evaluate the interleukin (IL)-6 and IL-1β level following the probiotic treatment.

Results

Lactobacillus spp. generally increased autophagy gene expression and consumption of Lactobacillus spp. before, simultaneously, and after inflammation, ultimately leading to activate autophagy pathways. The proinflammatory cytokines including IL-6 and IL-1β decreased after probiotic treatment.

Conclusions

Our native probiotic Lactobacillus spp. showed beneficial effects on HT-29 cells by increasing autophagy gene expression and decreasing the proinflammatory cytokines production in all treatments. Therefore, this novel probiotic cocktail Lactobacillus spp. can prevent and treat inflammation-related diseases.

背景:肠道炎症有多种原因,并导致一些炎症性疾病,自噬途径功能障碍可被视为其中之一。益生菌可通过激活自噬途径对减轻炎症有积极作用。为了评估益生菌作为预防和治疗药物对控制炎症性疾病症状的确切效果,我们旨在研究乳酸杆菌在调节自噬信号通路方面的功效:方法:在HT-29细胞株暴露于超声病原体并在炎症之前、之后和同时加入乳酸杆菌后,采用定量实时聚合酶链式反应分析参与吞噬细胞、自吞噬体和自溶酶体形成的自噬基因的表达。此外,还进行了细胞因子检测,以评估益生菌处理后白细胞介素(IL)-6 和 IL-1β 的水平:结果:乳酸杆菌普遍提高了自噬基因的表达,在炎症之前、同时和之后消耗乳酸杆菌,最终导致激活自噬途径。益生菌治疗后,包括 IL-6 和 IL-1β 在内的促炎细胞因子减少:我们的本地益生菌乳酸杆菌对 HT-29 细胞产生了有益的影响,在所有处理中都增加了自噬基因的表达,减少了促炎细胞因子的产生。因此,这种新型鸡尾酒乳酸杆菌益生菌可以预防和治疗炎症相关疾病。
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引用次数: 0
Expression of MAF bZIP transcription factor B protects against ulcerative colitis through the inhibition of the NF-κB pathway 表达 MAF bZIP 转录因子 B 可通过抑制 NF-κB 通路预防溃疡性结肠炎。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.1372
Jingwen Li, Qingmin Li, Wei Ma, Yongsheng Zhang, Xiaonan Li

Purpose

The aim of this study was to explore whether MAF bZIP transcription factor B (MAFB) might alleviate ulcerative colitis (UC) in dextran sulfate sodium (DSS)-induced mice and LPS-induced IEC-6 cells.

Methods

UC in vivo and in vitro model was established by using DSS and LPS, respectively. The mice body weight and disease activity index (DAI) score were recorded daily, and colon length was measured. Moreover, the permeability was evaluated utilizing a fluorescein isothiocyanate dextran (FITC-Dextran) probe. Histopathological changes of DSS-induced colitis mice was assessed utilizing H&E staining. Next, qRT-PCR was performed to detect IL-1β, IL-6, TNF-α, and IL-10 level in in vivo and in vitro. Furthermore, the level of MDA, SOD, CAT, and GSH were evaluated in colon tissues. Besides, the expressions of tight junction proteins and NF-κB pathway relative proteins were examined in colitis mice and IEC-6 cells using western blot, immunohistochemistry and immunofluorescence.

Results

MAFB level was downregulated in DSS-induced colitis mice. Moreover, the upregulation of MAFB protected mice from DSS-induced colitis by suppressing DSS-induced inflammation, oxidative stress, and intestinal barrier impairment. We also demonstrated that the upregulation of MAFB inactivated NF-κB pathway in DSS-caused colitis mice. Subsequently, we observed that MAFB upregulation could inhibit LPS-caused epithelial barrier impairment and inflammation in IEC-6 cells. Additionally, MAFB overexpression could suppress the activation of NF-κB pathway in IEC-6 cells.

Conclusion

The upregulation of MAFB could protect against UC via the suppression of inflammation and the intestinal barrier impairment through inhibiting the NF-κB pathway.

目的:本研究旨在探讨 MAF bZIP 转录因子 B(MAFB)是否能缓解右旋糖酐硫酸钠(DSS)诱导的小鼠和 LPS 诱导的 IEC-6 细胞的溃疡性结肠炎(UC):方法:分别使用右旋糖酐硫酸钠和 LPS 建立体内和体外 UC 模型。每天记录小鼠体重和疾病活动指数(DAI)评分,并测量结肠长度。此外,还利用异硫氰酸荧光素葡聚糖(FITC-Dextran)探针评估了渗透性。利用 H&E 染色法评估 DSS 诱导的结肠炎小鼠的组织病理学变化。然后,进行 qRT-PCR 检测体内和体外 IL-1β、IL-6、TNF-α 和 IL-10 的水平。此外,还评估了结肠组织中 MDA、SOD、CAT 和 GSH 的水平。此外,还使用 Western 印迹、免疫组化和免疫荧光技术检测了结肠炎小鼠和 IEC-6 细胞中紧密连接蛋白和 NF-κB 通路相关蛋白的表达:结果:DSS 诱导的结肠炎小鼠 MAFB 水平下调。此外,上调 MAFB 能抑制 DSS 诱导的炎症、氧化应激和肠屏障损伤,从而保护小鼠免受 DSS 诱导的结肠炎的影响。我们还证实,上调 MAFB 能使 DSS 引起的小鼠结肠炎的 NF-κB 通路失活。随后,我们观察到 MAFB 上调可抑制 LPS 引起的 IEC-6 细胞上皮屏障损伤和炎症。此外,MAFB的过表达还能抑制IEC-6细胞中NF-κB通路的激活:结论:MAFB的上调可通过抑制NF-κB通路抑制炎症和肠屏障损伤,从而保护UC。
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引用次数: 0
Evaluation of the protective effect of Curcuma longa and PPARγ agonist, pioglitazone on paraquat-induced lung injury in rats 评估姜黄和 PPARγ 激动剂吡格列酮对百草枯引起的大鼠肺损伤的保护作用
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.70001
Mohammad Hossein Eshaghi Ghalibaf, Mohammad Ehsan Taghavi zadeh Yazdi, Mona Mansourian, Nema Mohammadian Roshan, Mohammad Hossein Boskabady

Background

The inhalation of paraquat (PQ), one of the most widely used herbicides in the world, can result in lung injury. Curcuma longa (Cl) has long history in traditional and folk medicine for the treatment of a wide range of disorders including respiratory diseases.

Aim

The aim of the present work was to evaluate the preventive effect of Cl on inhaled PQ-induced lung injury in rats.

Methods

Male Wistar rats were divided into 8 groups (n = 7), one group exposed to saline (control) and other groups exposed to PQ aerosol. Saline (PQ), Cl extract, (two doses), curcumin (Cu), pioglitazone (Pio), and the combination of Cl-L + Pio and dexamethasone (Dex) were administered during the exposure period to PQ. Total and differential white blood cell (WBC) counts, oxidant and antioxidant indicators in the bronchoalveolar lavage (BALF), interleukin (IL)-10, and tumor necrosis alpha (TNF-α) levels in the lung tissues, lung histologic lesions score, and air way responsiveness to methacholine were evaluated.

Results

WBC counts (Total and differential), malondialdehyde level, tracheal responsiveness (TR), IL-10, TNF-α and histopathological changes of the lung were markedly elevated but total thiol content and the activities of catalase and superoxide dismutase were decreased in the BALF in the PQ group. Both doses of Cl, Cu, Pio, Cl-L + Pio, and Dex markedly improved all measured variables in comparison with the PQ group.

Conclusion

CI, Pio, and Cl-L + Pio improved PQ-induced lung inflammation and oxidative damage comparable with the effects of Dex.

背景:百草枯(PQ)是世界上最广泛使用的除草剂之一,吸入百草枯会导致肺损伤。莪术(Cl)在传统和民间医学中有着悠久的历史,可用于治疗包括呼吸系统疾病在内的多种疾病。目的:本研究旨在评估莪术对吸入百草枯引起的大鼠肺损伤的预防作用:雄性 Wistar 大鼠分为 8 组(n = 7),一组暴露于生理盐水(对照组),另一组暴露于 PQ 气溶胶。在暴露于 PQ 期间,分别给予生理盐水(PQ)、Cl 提取物(两种剂量)、姜黄素(Cu)、吡格列酮(Pio)以及 Cl-L + Pio 和地塞米松(Dex)的组合。对白细胞总数和差值、支气管肺泡灌洗液(BALF)中的氧化剂和抗氧化剂指标、肺组织中的白细胞介素(IL)-10和肿瘤坏死α(TNF-α)水平、肺组织学病变评分以及气道对甲氧胆碱的反应性进行了评估:结果:PQ 组白细胞计数(总数和差值)、丙二醛水平、气管反应性(TR)、IL-10、TNF-α 和肺组织病理学变化明显升高,但 PQ 组 BALF 中总硫醇含量、过氧化氢酶和超氧化物歧化酶活性降低。与 PQ 组相比,两种剂量的 Cl、Cu、Pio、Cl-L + Pio 和 Dex 均明显改善了所有测量变量:结论:CI、Pio 和 Cl-L + Pio 对 PQ 诱导的肺部炎症和氧化损伤的改善效果与 Dex 相当。
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引用次数: 0
Belimumab in early systemic lupus erythematosus: A propensity score matching analysis 贝利木单抗治疗早期系统性红斑狼疮:倾向得分匹配分析
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.1362
Chaofan Lu, Nan He, Lei Dou, Hongxia Yu, Mengtao Li, Xiaomei Leng, Xiaofeng Zeng

Objective

This study aimed to evaluate the clinical efficacy of belimumab in patients with early systemic lupus erythematosus (SLE), defined as having a disease duration of less than 6 months.

Methods

We retrospectively identified patients with SLE in the early stage who received belimumab and standard of care (belimumab group) or standard of care alone (control group) since September 2020. Propensity score matching (PSM) was used to reduce potential bias. The primary endpoint was lupus low disease activity status (LLDAS) at weeks 12 and 24. The secondary endpoints were remission and the proportion of glucocorticoid dose tapering to 7.5 mg/day. The efficacy of belimumab in patients with lupus nephritis was also assessed.

Results

Out of 111 eligible patients, 16 patients in the belimumab group and 31 patients in the control group were identified by 1:2 PSM. At week 24, a significantly higher proportion of individuals achieved low disease activity state (LLDAS) in the belimumab group compared to the control group (56.3% vs. 19.4%, OR = 5.357, 95% CI = 1.417 to 20.260, p = 0.013). Furthermore, more patients in the belimumab group were reduced to low-dose glucocorticoid ( ≤ 7.5 mg/day) at week 24 (75.0% vs. 35.5%, OR = 5.182, 95%CI = 1.339 to 20.058, p = 0.017). Significant improvements in Patient Global Assessment scores were observed at Week 12 and 24 for those treated with belimumab compared to controls. In a subgroup analysis evaluating the efficacy of belimumab in patients with lupus nephritis, 42.9% of the seven individuals treated with belimumab achieved a complete renal response (CRR) by Week 24, and no instances of disease relapse were observed.

Conclusions

In SLE patients with a disease duration of less than 6 months, belimumab treatment can promote LLDAS achievement and reduce glucocorticoid dose, leading to a better prognosis. Introducing belimumab in the early stage of SLE may be a beneficial decision.

研究目的本研究旨在评估贝利木单抗对早期系统性红斑狼疮(SLE)患者的临床疗效:我们回顾性地确定了自2020年9月以来接受过贝利木单抗和标准疗法(贝利木单抗组)或单纯标准疗法(对照组)治疗的早期系统性红斑狼疮患者。采用倾向评分匹配法(PSM)减少潜在偏倚。主要终点是第12周和第24周的狼疮低疾病活动度状态(LLDAS)。次要终点是缓解率和糖皮质激素剂量减至7.5毫克/天的比例。此外,还评估了贝利木单抗对狼疮肾炎患者的疗效:在111名符合条件的患者中,通过1:2 PSM确定了16名贝利单抗组患者和31名对照组患者。第24周时,与对照组相比,贝利木单抗组达到低疾病活动状态(LLDAS)的比例明显更高(56.3%对19.4%,OR = 5.357,95% CI = 1.417对20.260,P = 0.013)。此外,更多的贝利木单抗组患者在第24周时减量使用低剂量糖皮质激素(≤ 7.5 mg/天)(75.0% vs. 35.5%,OR = 5.182,95%CI = 1.339 to 20.058,p = 0.017)。与对照组相比,接受贝利木单抗治疗的患者在第12周和第24周的 "患者总体评估 "评分均有显著改善。在一项评估贝利木单抗对狼疮肾炎患者疗效的亚组分析中,7名接受贝利木单抗治疗的患者中有42.9%在第24周时获得了完全肾脏反应(CRR),而且没有观察到疾病复发的情况:结论:对于病程少于6个月的系统性红斑狼疮患者,贝利木单抗治疗可促进LLDAS达标并减少糖皮质激素剂量,从而改善预后。在系统性红斑狼疮早期使用贝利木单抗可能是一个有益的决定。
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引用次数: 0
Clinical significance of serum CXCL9, CXCL10, and CXCL11 in patients with lupus nephritis 狼疮性肾炎患者血清中 CXCL9、CXCL10 和 CXCL11 的临床意义。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.1368
Shuo Wang, Yanhui Cui

Study Design

Lupus nephritis (LN) is an autoimmune disease as a complication of systemic lupus erythematosus (SLE). LN is typically diagnosed through a combination of clinical evaluation as index scoring, and kidney biopsy as a more accurate but invasive examination. In the current study, we assessed serological markers including IFN-γ-inducible chemokines C-X-C motif chemokine ligand (CXCL)9, CXCL10, and CXCL11 in diagnosing LN.

Methods

A retrospective analysis was conducted on 160 SLE patients with and without LN. Fasting venous blood was collected from the study subjects for measuring serum levels of CXCL9, CXCL10, and CXCL11. The assessment of clinical disease activity in SLE was conducted using the SLE Disease Activity Index (SLEDAI)-2000 scoring system. LN disease activity was conducted using the Austin scoring system. LN was further confirmed following kidney biopsy, and data were compared by receiver operating characteristic (ROC) analysis.

Results

SLE patients with LN showed longer SLE duration, enhanced SLEDAI scores, lower serum anti-ds-DNA antibody levels when compared to SLE patients without LN. Specifically, these patients had significantly higher serum levels of CXCL9, CXCL10 and CXCL11. CXCL9, CXCL10, and CXCL11 showed positive correlation with SLE disease activity in SLE patients with LN. ROC analysis of CXCL9, CXCL10, and CXCL11 showed substantial enhancement of sensitivity and specificity for the diagnosis of LN in the patients with SLE.

Conclusions

Serum CXCL9, CXCL10, and CXCL11 levels may improve the sensitivity and specificity for the diagnosis of LN in SLE patients.

研究设计:狼疮性肾炎(LN)是一种自身免疫性疾病,是系统性红斑狼疮(SLE)的并发症之一。狼疮性肾炎的诊断通常需要结合临床评估和肾活检,前者是指标评分,后者是更准确的侵入性检查。在本研究中,我们评估了诊断 LN 的血清学标记物,包括 IFN-γ 诱导的趋化因子 C-X-C motif chemokine ligand (CXCL)9、CXCL10 和 CXCL11:对160名伴有和不伴有LN的系统性红斑狼疮患者进行了回顾性分析。采集研究对象的空腹静脉血,测量血清中 CXCL9、CXCL10 和 CXCL11 的水平。系统性红斑狼疮临床疾病活动性的评估采用系统性红斑狼疮疾病活动性指数(SLEDAI)-2000评分系统进行。LN疾病活动性采用奥斯汀评分系统进行评估。肾活检进一步证实了LN,并通过接收器操作特征(ROC)分析对数据进行了比较:结果:与无LN的系统性红斑狼疮患者相比,有LN的系统性红斑狼疮患者病程更长,SLEDAI评分更高,血清抗ds-DNA抗体水平更低。特别是,这些患者血清中的CXCL9、CXCL10和CXCL11水平明显更高。在有 LN 的系统性红斑狼疮患者中,CXCL9、CXCL10 和 CXCL11 与系统性红斑狼疮疾病活动呈正相关。CXCL9、CXCL10和CXCL11的ROC分析显示,系统性红斑狼疮患者LN诊断的敏感性和特异性均有显著提高:结论:血清 CXCL9、CXCL10 和 CXCL11 水平可提高系统性红斑狼疮患者 LN 诊断的敏感性和特异性。
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引用次数: 0
Forsythiaside A ameliorates bleomycin-induced pulmonary fibrosis by inhibiting oxidative stress and apoptosis 连翘皂苷 A 可通过抑制氧化应激和细胞凋亡改善博莱霉素诱导的肺纤维化。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.70006
Fan Yang, Qinqin Zhang, Xi Wang, Yingbo Hu, Suiqing Chen

Background

Pulmonary fibrosis (PF) is a common clinically critical disease characterized by high morbidity and high mortality. Forsythiaside A (FA) is a phenylethanol glycoside component in Forsythia suspensa, which has anti-inflammatory, antioxidant, and antiviral activities. However, the effects of FA on bleomycin (BLM)-induced PF are unclear.

Purpose

The present study explored the role of FA in the amelioration of oxidative stress and apoptosis in BLM-induced PF as well as the possible underlying mechanisms, in vivo and in vitro.

Methods

Network pharmacology was used to collect the effects of FA on BLM-induced PF. Subsequently, further observation of the effects of FA on mice with PF by pulmonary pathological changes, transmission electron microscopy, real-time polymerase chain reaction, Western blot analysis, immunofluorescence, and immunohistochemistry. An in vitro model was constructed by inducing A549 with transforming growth factor beta-1 (TGF-β1) to observe the effect of FA on epithelial cell apoptosis.

Results

Network pharmacology predicted signaling pathways such as IL-17 signaling pathway and Relaxin signaling pathway. The results of in vivo studies showed that FA ameliorated BLM-induced PF through inhibition of fibrosis, modulation of apoptosis, and oxidative stress. In addition, FA promoted TGF-β1-induced apoptosis in A549 cells.

Conclusions

The results of our study suggested that FA could protect mice against BLM-induced PF by regulating oxidative stress and apoptosis as well as the Epithelial mesenchymal transition pathway.

背景:肺纤维化(PF)是一种常见的临床危重疾病,具有高发病率和高死亡率的特点。连翘苷 A(FA)是连翘中的一种苯乙醇苷成分,具有抗炎、抗氧化和抗病毒活性。目的:本研究在体内和体外探讨了 FA 在改善 BLM 诱导的 PF 中氧化应激和细胞凋亡中的作用以及可能的内在机制:方法:采用网络药理学方法收集 FA 对 BLM 诱导的 PF 的影响。随后,通过肺部病理变化、透射电子显微镜、实时聚合酶链反应、Western 印迹分析、免疫荧光和免疫组化进一步观察 FA 对 PF 小鼠的影响。通过用转化生长因子β-1(TGF-β1)诱导A549构建了一个体外模型,以观察FA对上皮细胞凋亡的影响:网络药理学预测了IL-17信号通路和松弛素信号通路等信号通路。体内研究结果表明,FA 通过抑制纤维化、调节细胞凋亡和氧化应激改善了 BLM 诱导的 PF。此外,FA 还能促进 TGF-β1 诱导的 A549 细胞凋亡:我们的研究结果表明,FA 可通过调节氧化应激和细胞凋亡以及上皮间充质转化途径,保护小鼠免受 BLM 诱导的 PF 的影响。
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引用次数: 0
Identification and analysis of oxidative stress-related genes in hypoxic-ischemic brain damage using bioinformatics and experimental verification 利用生物信息学和实验验证鉴定和分析缺氧缺血性脑损伤中的氧化应激相关基因。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-22 DOI: 10.1002/iid3.70000
Ni Jin, Sha Sha, Yanghao Ruan, Ying Ouyang

Background

Oxidative stress (OS) plays a major role in the progress of hypoxic-ischemic brain damage (HIBD). This study aimed to investigate OS-related genes and their underlying molecular mechanisms in neonatal HIBD.

Methods

Microarray data sets were acquired from the Gene Expression Omnibus (GEO) database to screen the differentially expressed genes (DEGs) between control samples and HIBD samples. OS-related genes were drawn from GeneCards and OS-DEGs in HIBD were obtained by intersecting with the DEGs. Subsequently, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) were conducted to determine the underlying mechanisms and functions of OS-DEGs in HIBD. Moreover, the hub genes were screened using the protein−protein interaction network and identified in the GSE144456 data set. CIBERSORT was then performed to evaluate the expression of immunocytes in each sample and perform a correlation analysis of the optimal OS-DEGs and immunocytes. Finally, quantitative reverse transcription polymerase chain reaction (RT-qPCR) and immunohistochemistry were performed to validate the expression levels of the optimal OS-DEGs.

Results

In total, 93 OS-DEGs were identified. GO, KEGG, and GSEA enrichment analyses indicated that these genes were predominantly enriched in OS and inflammation. Four OS-related biomarker genes (Jun, Fos, Tlr2, and Atf3) were identified and verified. CIBERSORT analysis revealed the dysregulation of six types of immune cells in the HIBD group. Moreover, 47 drugs that might target four OS-related biomarker genes were screened. Eventually, RT-qPCR and immunohistochemistry results for rat samples further validated the expression levels of Fos, Tlr2, and Atf3.

Conclusions

Fos, Tlr2 and Atf3 are potential OS-related biomarkers of HIBD progression. The mechanisms of OS are associated with those of neonatal HIBD.

背景:氧化应激(OS)在缺氧缺血性脑损伤(HIBD)的进展中起着重要作用。本研究旨在探讨新生儿HIBD中与OS相关的基因及其潜在的分子机制:方法:从基因表达总库(Gene Expression Omnibus,GEO)数据库中获取微阵列数据集,筛选对照样本与HIBD样本之间的差异表达基因(DEGs)。OS相关基因来自GeneCards,HIBD中的OS-DEG通过与DEG交叉获得。随后,通过基因本体(GO)和京都基因组百科全书(KEGG)以及基因组富集分析(GSEA)来确定OS-DEGs在HIBD中的潜在机制和功能。此外,还利用蛋白质-蛋白质相互作用网络筛选了GSE144456数据集中的枢纽基因。然后进行 CIBERSORT 评估每个样本中免疫细胞的表达情况,并对最佳 OS-DEG 与免疫细胞进行相关性分析。最后,进行定量反转录聚合酶链反应(RT-qPCR)和免疫组化来验证最佳OS-DEGs的表达水平:结果:共鉴定出 93 个 OS-DEG。GO、KEGG和GSEA富集分析表明,这些基因主要富集在OS和炎症中。4个与OS相关的生物标记基因(Jun、Fos、Tlr2和Atf3)得到了鉴定和验证。CIBERSORT分析显示,HIBD组中有六种免疫细胞失调。此外,还筛选出了47种可能针对4种OS相关生物标志基因的药物。最终,大鼠样本的RT-qPCR和免疫组化结果进一步验证了Fos、Tlr2和Atf3的表达水平:结论:Fos、Tlr2和Atf3是HIBD进展过程中潜在的OS相关生物标志物。结论:Fos、Tlr2 和 Atf3 是潜在的 OS 相关生物标志物,OS 的发生机制与新生儿 HIBD 的发生机制相关。
{"title":"Identification and analysis of oxidative stress-related genes in hypoxic-ischemic brain damage using bioinformatics and experimental verification","authors":"Ni Jin,&nbsp;Sha Sha,&nbsp;Yanghao Ruan,&nbsp;Ying Ouyang","doi":"10.1002/iid3.70000","DOIUrl":"10.1002/iid3.70000","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>Oxidative stress (OS) plays a major role in the progress of hypoxic-ischemic brain damage (HIBD). This study aimed to investigate OS-related genes and their underlying molecular mechanisms in neonatal HIBD.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Methods</h3>\u0000 \u0000 <p>Microarray data sets were acquired from the Gene Expression Omnibus (GEO) database to screen the differentially expressed genes (DEGs) between control samples and HIBD samples. OS-related genes were drawn from GeneCards and OS-DEGs in HIBD were obtained by intersecting with the DEGs. Subsequently, Gene Ontology (GO) and Kyoto Encyclopedia of Genes and Genomes (KEGG), and Gene Set Enrichment Analysis (GSEA) were conducted to determine the underlying mechanisms and functions of OS-DEGs in HIBD. Moreover, the hub genes were screened using the protein−protein interaction network and identified in the GSE144456 data set. CIBERSORT was then performed to evaluate the expression of immunocytes in each sample and perform a correlation analysis of the optimal OS-DEGs and immunocytes. Finally, quantitative reverse transcription polymerase chain reaction (RT-qPCR) and immunohistochemistry were performed to validate the expression levels of the optimal OS-DEGs.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>In total, 93 OS-DEGs were identified. GO, KEGG, and GSEA enrichment analyses indicated that these genes were predominantly enriched in OS and inflammation. Four OS-related biomarker genes (Jun, Fos, Tlr2, and Atf3) were identified and verified. CIBERSORT analysis revealed the dysregulation of six types of immune cells in the HIBD group. Moreover, 47 drugs that might target four OS-related biomarker genes were screened. Eventually, RT-qPCR and immunohistochemistry results for rat samples further validated the expression levels of Fos, Tlr2, and Atf3.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusions</h3>\u0000 \u0000 <p>Fos, Tlr2 and Atf3 are potential OS-related biomarkers of HIBD progression. The mechanisms of OS are associated with those of neonatal HIBD.</p>\u0000 </section>\u0000 </div>","PeriodicalId":13289,"journal":{"name":"Immunity, Inflammation and Disease","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-08-22","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/iid3.70000","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142017312","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
The role of tryptophan metabolism and tolerogenic dendritic cells in maintaining immune tolerance: Insights into celiac disease pathogenesis 色氨酸代谢和耐受性树突状细胞在维持免疫耐受中的作用:洞察乳糜泻发病机制。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-16 DOI: 10.1002/iid3.1354
Fatemeh Asgari, Mahdi Khodadoust, Abdolrahim Nikzamir, Somayeh Jahani-Sherafat, Mostafa Rezaei Tavirani, Mohammad Rostami-Nejad

Background

In mammals, amino acid metabolism has evolved to control immune responses. Tryptophan (Trp) is the rarest essential amino acid found in food and its metabolism has evolved to be a primary regulatory node in the control of immune responses. Celiac disease (CeD) is a developed immunological condition caused by gluten intolerance and is linked to chronic small intestine enteropathy in genetically predisposed individuals. Dendritic cells (DCs), serving as the bridge between innate and adaptive immunities, can influence immunological responses in CeD through phenotypic alterations.

Objective

This review aims to highlight the connection between Trp metabolism and tolerogenic DCs, and the significance of this interaction in the pathogenesis of CeD.

Results

It is been recognized that various DC subtypes contribute to the pathogenesis of CeD. Tolerogenic DCs, in particular, are instrumental in inducing immune tolerance, leading to T-reg differentiation that helps maintain intestinal immune tolerance against inflammatory responses in CeD patients and those with other autoimmune disorders. T-regs, a subset of T-cells, play a crucial role in maintaining intestinal immunological homeostasis by regulating the activities of other immune cells. Notably, Trp metabolism, essential for T-reg function, facilitates T-reg differentiation through microbiota-mediated degradation and the kynurenine pathway.

Conclusion

Therefore, alterations in Trp metabolism could potentially influence the immune response in CeD, affecting both the development of the disease and the persistence of symptoms despite adherence to a gluten-free diet.

背景:在哺乳动物中,氨基酸代谢的进化是为了控制免疫反应。色氨酸(Trp)是食物中最稀有的必需氨基酸,其代谢进化为控制免疫反应的主要调节节点。乳糜泻(Celiac disease,CeD)是一种由麸质不耐受引起的发达免疫学疾病,与遗传易感人群的慢性小肠肠病有关。树突状细胞(DC)是先天性免疫和适应性免疫之间的桥梁,可通过表型改变影响乳糜泻患者的免疫反应:本综述旨在强调 Trp 代谢与耐受性 DC 之间的联系,以及这种相互作用在 CeD 发病机制中的意义:结果:人们已经认识到,不同亚型的DC对CeD的发病机制起着不同的作用。耐受性直流细胞尤其有助于诱导免疫耐受,导致T-调节分化,从而帮助维持肠道免疫耐受,抵御CeD患者和其他自身免疫性疾病患者的炎症反应。T-regs 是 T 细胞的一个亚群,通过调节其他免疫细胞的活动,在维持肠道免疫平衡方面发挥着至关重要的作用。值得注意的是,Trp 代谢对 T-reg 的功能至关重要,它通过微生物群介导的降解和犬尿氨酸途径促进 T-reg 的分化:因此,Trp代谢的改变可能会影响CeD的免疫反应,从而影响疾病的发展以及在坚持无麸质饮食后症状的持续存在。
{"title":"The role of tryptophan metabolism and tolerogenic dendritic cells in maintaining immune tolerance: Insights into celiac disease pathogenesis","authors":"Fatemeh Asgari,&nbsp;Mahdi Khodadoust,&nbsp;Abdolrahim Nikzamir,&nbsp;Somayeh Jahani-Sherafat,&nbsp;Mostafa Rezaei Tavirani,&nbsp;Mohammad Rostami-Nejad","doi":"10.1002/iid3.1354","DOIUrl":"10.1002/iid3.1354","url":null,"abstract":"<div>\u0000 \u0000 \u0000 <section>\u0000 \u0000 <h3> Background</h3>\u0000 \u0000 <p>In mammals, amino acid metabolism has evolved to control immune responses. Tryptophan (Trp) is the rarest essential amino acid found in food and its metabolism has evolved to be a primary regulatory node in the control of immune responses. Celiac disease (CeD) is a developed immunological condition caused by gluten intolerance and is linked to chronic small intestine enteropathy in genetically predisposed individuals. Dendritic cells (DCs), serving as the bridge between innate and adaptive immunities, can influence immunological responses in CeD through phenotypic alterations.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Objective</h3>\u0000 \u0000 <p>This review aims to highlight the connection between Trp metabolism and tolerogenic DCs, and the significance of this interaction in the pathogenesis of CeD.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Results</h3>\u0000 \u0000 <p>It is been recognized that various DC subtypes contribute to the pathogenesis of CeD. Tolerogenic DCs, in particular, are instrumental in inducing immune tolerance, leading to T-reg differentiation that helps maintain intestinal immune tolerance against inflammatory responses in CeD patients and those with other autoimmune disorders. T-regs, a subset of T-cells, play a crucial role in maintaining intestinal immunological homeostasis by regulating the activities of other immune cells. Notably, Trp metabolism, essential for T-reg function, facilitates T-reg differentiation through microbiota-mediated degradation and the kynurenine pathway.</p>\u0000 </section>\u0000 \u0000 <section>\u0000 \u0000 <h3> Conclusion</h3>\u0000 \u0000 <p>Therefore, alterations in Trp metabolism could potentially influence the immune response in CeD, affecting both the development of the disease and the persistence of symptoms despite adherence to a gluten-free diet.</p>\u0000 </section>\u0000 </div>","PeriodicalId":13289,"journal":{"name":"Immunity, Inflammation and Disease","volume":null,"pages":null},"PeriodicalIF":3.1,"publicationDate":"2024-08-16","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://onlinelibrary.wiley.com/doi/epdf/10.1002/iid3.1354","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141987887","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Exploring computational approaches to design mRNA Vaccine against vaccinia and Mpox viruses 探索设计针对疫苗和 Mpox 病毒的 mRNA 疫苗的计算方法。
IF 3.1 4区 医学 Q3 IMMUNOLOGY Pub Date : 2024-08-16 DOI: 10.1002/iid3.1360
Elijah K. Oladipo, Olanrewaju D. Oyelakin, Abdulsamad O. Aiyelabegan, Elizabeth O. Olajide, Victoria O. Olatayo, Kaothar P. Owolabi, Yewande B. Shittu, Rhoda O. Olugbodi, Hezekiah A. Ajala, Raji A. Rukayat, Deborah O. Olayiwola, Boluwatife A. Irewolede, Esther M. Jimah, Julius K. Oloke, Taiwo O. Ojo, Olumide F. Ajani, Bamidele A. Iwalokun, Olatunji M. Kolawole, Olumuyiwa E. Ariyo, Daniel A. Adediran, Seun E. Olufemi, Helen Onyeaka

Background

Messenger RNA (mRNA) vaccines emerged as a powerful tool in the fight against infections. Unlike traditional vaccines, this unique type of vaccine elicits robust and persistent innate and humoral immune response with a unique host cell-mediated pathogen gene expression and antigen presentation.

Methods

This offers a novel approach to combat poxviridae infections. From the genome of vaccinia and Mpox viruses, three key genes (E8L, E7R, and H3L) responsible for virus attachment and virulence were selected and employed for designing the candidate mRNA vaccine against vaccinia and Mpox viral infection. Various bioinformatics tools were employed to generate (B cell, CTL, and HTL) epitopes, of which 28 antigenic and immunogenic epitopes were selected and are linked to form the mRNA vaccine construct. Additional components, including a 5′ cap, 5′ UTR, adjuvant, 3′ UTR, and poly(A) tail, were incorporated to enhance stability and effectiveness. Safety measures such as testing for human homology and in silico immune simulations were implemented to avoid autoimmunity and to mimics the immune response of human host to the designed mRNA vaccine, respectively. The mRNA vaccine's binding affinity was evaluated by docking it with TLR-2, TLR-3, TLR-4, and TLR-9 receptors which are subsequently followed by molecular dynamics simulations for the highest binding one to predict the stability of the binding complex.

Results

With a 73% population coverage, the mRNA vaccine looks promising, boasting a molecular weight of 198 kDa and a molecular formula of C8901H13609N2431O2611S48 and it is said to be antigenic, nontoxic and nonallergic, making it safe and effective in preventing infections with Mpox and vaccinia viruses, in comparison with other insilico-designed vaccine for vaccinia and Mpox viruses.

Conclusions

However, further validation through in vivo and in vitro techniques is underway to fully assess its potential.

背景:信使核糖核酸(mRNA)疫苗是抗感染的有力工具。与传统疫苗不同,这种独特类型的疫苗通过独特的宿主细胞介导的病原体基因表达和抗原递呈,引起强大而持久的先天和体液免疫反应:方法:这为抗击痘病毒感染提供了一种新方法。方法:这提供了一种对抗痘病毒感染的新方法。从疫苗和 Mpox 病毒的基因组中筛选出了负责病毒附着和毒力的三个关键基因(E8L、E7R 和 H3L),并将其用于设计对抗疫苗和 Mpox 病毒感染的候选 mRNA 疫苗。利用各种生物信息学工具生成(B 细胞、CTL 和 HTL)表位,从中筛选出 28 个抗原性和免疫原性表位,并将其连接成 mRNA 疫苗构建体。此外还加入了其他成分,包括 5' cap、5' UTR、佐剂、3' UTR 和 poly(A) 尾部,以提高稳定性和有效性。为了避免自身免疫和模拟人类宿主对所设计的 mRNA 疫苗的免疫反应,还采取了一些安全措施,如人类同源性测试和硅学免疫模拟。通过与 TLR-2、TLR-3、TLR-4 和 TLR-9 受体对接,评估了 mRNA 疫苗的结合亲和力:该 mRNA 疫苗的群体覆盖率为 73%,分子量为 198 kDa,分子式为 C8901H13609N2431O2611S48,据说具有抗原性、无毒性和无过敏性,与其他针对疫苗和 Mpox 病毒的实验室设计疫苗相比,它在预防 Mpox 和疫苗病毒感染方面安全有效:然而,要全面评估其潜力,还需通过体内和体外技术进行进一步验证。
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引用次数: 0
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Immunity, Inflammation and Disease
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