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Issue Information: Biotechnology Journal 1/2025
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2025-01-08 DOI: 10.1002/biot.202570001
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引用次数: 0
Multienzyme Cascade Synthesis of Rare Sugars From Glycerol in Bacillus subtilis 枯草芽孢杆菌甘油多酶级联合成稀有糖的研究。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-26 DOI: 10.1002/biot.202400539
Kangqing Fei, Liqun Shen, Xiao-Dong Gao, Hideki Nakanishi, Zijie Li

Background

Rare sugars are valuable and unique monosaccharides extensively utilized in the food, cosmetics, and pharmaceutical industries. Considering the high purification costs and the complex processes of enzymatic synthesis, whole-cell conversion has emerged as a significantly important alternative. The Escherichia coli strain was initially used in whole-cell synthesis of rare sugars. However, its pathogenic nature poses limitations to its widespread applications. Consequently, there is an urgent need to explore biologically safe strains for the efficient production of rare sugars.

Results

In this study, the generally regarded as safe (GRAS) strain Bacillus subtilis was employed as the chassis cells to produce rare sugars via whole-cell conversion. Three genes encoding alditol oxidase (AldO), L-rhamnulose-1-phosphate aldolase (RhaD), and fructose-1-phosphatase (YqaB) involved in rare sugars biosynthesis were heterogeneously expressed in B. subtilis to convert the only substrate glycerol into rare sugars. To enhance the expression levels of the relevant enzymes in B. subtilis, different promoters for aldO, rhaD, and yqaB were investigated and optimized in this system. Under the optimized reaction conditions, the maximum total production titer was 16.96 g/L of D-allulose and D-sorbose with a conversion yield of 33.9% from glycerol. Furthermore, the engineered strain produced 26.68 g/L of D-allulose and D-sorbose through fed-batch for the whole-cell conversion, representing the highest titer from glycerol reported to date.

Conclusion

This study demonstrated an efficient and cost-effective method for the synthesis of rare sugars, providing a food-grade platform with the potential to meet the growing demand for rare sugars in industries.

背景:稀有糖是一种有价值且独特的单糖,广泛应用于食品、化妆品和制药行业。考虑到酶合成的高纯化成本和复杂的过程,全细胞转化已成为一种重要的替代方法。大肠杆菌菌株最初用于全细胞合成稀有糖。然而,其致病性限制了其广泛应用。因此,迫切需要探索生物安全菌株,以有效生产稀有糖。结果:本研究采用公认安全(GRAS)的枯草芽孢杆菌作为底盘细胞,通过全细胞转化生产稀有糖。在枯草芽孢杆菌中,有3个参与稀有糖生物合成的糖醇氧化酶(AldO)、l -鼠李糖糖-1-磷酸醛缩酶(RhaD)和果糖-1-磷酸酶(YqaB)基因异质表达,将唯一的底物甘油转化为稀有糖。为了提高相关酶在枯草芽孢杆菌中的表达水平,在该系统中对aldO、rhaD和yqaB的不同启动子进行了研究和优化。在优化后的反应条件下,产d -丙烯醛和d -山梨糖的最大滴度为16.96 g/L,甘油的转化率为33.9%。此外,该工程菌株通过补料批产生了26.68 g/L的D-allulose和D-sorbose,用于全细胞转化,是迄今为止报道的甘油的最高滴度。结论:本研究展示了一种高效且经济的稀有糖合成方法,为满足工业对稀有糖日益增长的需求提供了一个食品级平台。
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引用次数: 0
Blue Light-Induced, Dosed Protein Expression of Active BDNF in Human Cells Using the Optogenetic CRY2/CIB System 利用光遗传CRY2/CIB系统蓝光诱导活性BDNF在人细胞中的剂量蛋白表达
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-26 DOI: 10.1002/biot.202400384
Sina Christoffers, Nina Wichert, Elena Wiebe, Maria Leilani Torres-Mapa, Madeleine Goblet, Jennifer Harre, Odett Kaiser, Marc-Nils Wahalla, Holger Blume, Alexander Heisterkamp, Athanasia Warnecke, Cornelia Blume

The use of optogenetic tools offers an excellent method for spatially and temporally regulated gene and protein expression in cell therapeutic approaches. This could be useful as a concomitant therapeutic measure, especially in small body compartments such as the inner ear, for example, during cochlea implantation, to enhance neuronal cell survival and function. Here, we used the blue light activatable CRY2/CIB system to induce transcription of brain-derived neurotrophic factor (BDNF) in human cells. Transfection with three plasmids, encoding for the optogenetic system and the target, as well as illumination protocols were optimized with luciferase as a reporter to achieve the highest protein expression in human embryonic kidney cells 293. Illumination was performed either with a light-emitting diode or with a scanning laser setup. The optimized protocols were applied for the production of BDNF. We could demonstrate a 64.7-fold increase of BNDF expression upon light induction compared to the basal level. Light-induced BDNF was biologically active and enhanced survival and neurite growth of spiral ganglion neurons. The optogenetic approach can be transferred to autologous cell systems, such as bone marrow-derived mesenchymal stem cells, and thus represents the first optogenetic neurotrophic therapy for the inner ear.

光遗传学工具的使用为细胞治疗方法中空间和时间调节基因和蛋白质表达提供了一种极好的方法。这可能是一种有用的伴随治疗措施,特别是在小的身体隔间,如内耳,例如,在耳蜗植入期间,以提高神经元细胞的存活率和功能。在这里,我们使用蓝光可激活的CRY2/CIB系统诱导人细胞中脑源性神经营养因子(BDNF)的转录。以荧光素酶为报告基因,转染三种质粒,编码光遗传系统和靶标,优化光照方案,在人胚胎肾细胞293中实现最高的蛋白表达。用发光二极管或扫描激光装置进行照明。将优化后的工艺应用于BDNF的生产。我们可以证明,与基础水平相比,光照诱导下BNDF的表达增加了64.7倍。光诱导的BDNF具有生物活性,可促进螺旋神经节神经元的存活和神经突生长。光遗传方法可以转移到自体细胞系统,如骨髓来源的间充质干细胞,因此代表了内耳的第一个光遗传神经营养疗法。
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引用次数: 0
Medical Ultrasound Application Beyond Diagnosis: Insights From Ultrasound Sensing and Biological Response 医学超声在诊断之外的应用:来自超声传感和生物反应的见解。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-26 DOI: 10.1002/biot.202400561
Yubo Lai, Wenxin Tao, Lantian Wang, Zhaoyou Liu, Pengying Wu, Guodong Yang, Lijun Yuan

Ultrasound (US) can easily penetrate media with excellent spatial precision corresponding to its wavelength. Naturally, US plays a pivotal role in the echolocation abilities of certain mammals such as bats and dolphins. In addition, medical US generated by transducers interact with tissues via delivering ultrasonic energy in the modes of heat generation, exertion of acoustic radiation force (ARF), and acoustic cavitation. Based on the principle of echolocation, various assistive devices for visual impairment people have been developed. High-Intensity Focused Ultrasound (HIFU) are developed for targeted ablation and tissue destruction. Besides thermal ablation, histotripsy with US is designed to damage tissue purely via mechanical effect without thermal coagulation. Low-Intensity Focused Ultrasound (LIFU) has been proven to be an effective stimulation method for neuromodulation. Furthermore, US has been reported to transiently increase the permeability of biological membranes, enabling acoustic transfection and blood-brain barrier open. All of these advances in US are changing the clinic. This review mainly introduces the advances in these aspects, focusing on the physical and biological principles, challenges, and future direction.

超声(US)可以很容易地穿透介质,具有与其波长相对应的极好的空间精度。自然,US在某些哺乳动物(如蝙蝠和海豚)的回声定位能力中起着关键作用。此外,换能器产生的医用超声通过产生热量、施加声辐射力(ARF)和声空化等方式传递超声能量与组织相互作用。基于回声定位的原理,为视障人士开发了各种辅助装置。高强度聚焦超声(HIFU)用于靶向消融和组织破坏。除热消融外,US组织切片的设计纯粹是通过机械作用而不是热凝固来破坏组织。低强度聚焦超声(LIFU)已被证明是一种有效的神经调节刺激方法。此外,据报道,US可以瞬间增加生物膜的通透性,使声转染和血脑屏障打开。美国的所有这些进步都在改变着诊所。本文主要介绍了这些方面的研究进展,重点介绍了物理和生物学原理、面临的挑战和未来的发展方向。
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引用次数: 0
Lactobacillus reuteri Assists Engineered Bacteria That Target Tumors to Release PD-L1nb to Mitigate the Adverse Effects of Breast Cancer Immunotherapy 罗伊氏乳杆菌协助靶向肿瘤的工程细菌释放PD-L1nb以减轻乳腺癌免疫治疗的不良反应。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-22 DOI: 10.1002/biot.202400428
Lijun Yue, Feng Geng, Jiayi Jin, Wenzhen Li, Ben Liu, Maoru Du, Xue Gao, Junhong Lü, Xiaohong Pan

Programmed death protein-ligand 1 (PD-L1) inhibitors demonstrate significant antitumor efficacy by modulating T-cell activity and inhibiting the PD-1/PD-L1 pathway, thus enhancing immune responses. Despite their robust effects, systemic administration of these inhibitors is linked to severe immune toxicity. To address this issue, we engineered a strain, REP, which releases PD-L1 nanoantibodies (PD-L1nb) to treat breast cancer and attenuate immunotherapy-related side effects. REP selectively targets tumors and periodically releases PD-L1nb within tumors via a quorum-sensing lysis system. Administration of 108 colony-forming units (CFU) of REP led to a substantial 52% reduction in tumor growth, achieved through the sustained release of PD-L1nb. Importantly, there were no detectable lesions in other organs, with the exception of mild intestinal damage. Further, we explored the potential of a combined treatment using Lactobacillus reuteri (LR) and REP to alleviate intestinal inflammation. LR modulates the expression of inflammatory markers IL-1β, IL-6, and IL-10 through the JNK pathway, reducing intestinal inflammation without compromising REP's antitumor efficacy. Consequently, we formulated a dual strategy employing an engineered strain and probiotics to reduce the adverse effects of immunotherapy in cancer treatment.

程序性死亡蛋白配体1 (PD-L1)抑制剂通过调节t细胞活性和抑制PD-1/PD-L1通路,从而增强免疫应答,显示出显著的抗肿瘤功效。尽管这些抑制剂具有强大的作用,但全身给药与严重的免疫毒性有关。为了解决这个问题,我们设计了一种菌株,REP,它可以释放PD-L1纳米抗体(PD-L1nb)来治疗乳腺癌并减轻免疫治疗相关的副作用。REP选择性靶向肿瘤,并通过群体感应裂解系统在肿瘤内周期性释放PD-L1nb。108个集落形成单位(CFU)的REP通过PD-L1nb的持续释放导致肿瘤生长显著减少52%。重要的是,除了轻微的肠道损伤外,其他器官没有可检测到的病变。此外,我们探索了使用罗伊氏乳杆菌(LR)和REP联合治疗的潜力,以减轻肠道炎症。LR通过JNK途径调节炎症标志物IL-1β、IL-6和IL-10的表达,在不影响REP抗肿瘤功效的情况下减轻肠道炎症。因此,我们制定了采用工程菌株和益生菌的双重策略来减少免疫治疗在癌症治疗中的不良影响。
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引用次数: 0
Adaptable Manufacturing and Biofabrication of Milliscale Organ Chips With Perfusable Vascular Beds 具有可灌注血管床的百万分级器官芯片的适应性制造和生物制造。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-22 DOI: 10.1002/biot.202400550
Charles Ethan Byrne, Ashley T. Martier, Gideon Wills Kpeli, Kevin Michael Conrad, William Bralower, Elisabet Olsen, Gabrielle Fortes, Caroline C. Culp, Max Wendell, Keefer A. Boone, Matthew R. Burow, Mark J. Mondrinos

Microphysiological systems (MPS) containing perfusable vascular beds unlock the ability to model tissue-scale elements of vascular physiology and disease in vitro. Access to inexpensive stereolithography (SLA) 3D printers now enables benchtop fabrication of polydimethylsiloxane (PDMS) organ chips, eliminating the need for cleanroom access and microfabrication expertise, and can facilitate broader adoption of MPS approaches in preclinical research. Rapid prototyping of organ chip mold designs accelerates the processes of design, testing, and iteration, but geometric distortion and surface roughness of SLA resin prints can impede the development of standardizable manufacturing workflows. This study reports postprocessing procedures for manufacturing SLA-printed molds that produce fully cured, flat, patently bonded, and optically clear polydimethyl siloxane (PDMS) organ chips. Injection loading tests were conducted to identify milliscale membrane-free organ chip (MFOC) designs that allowed reproducible device loading by target end-users, a key requirement for broad nonexpert adoption in preclinical research. The optimized milliscale MFOC design was used to develop tissue engineering protocols for (i) driving bulk tissue vasculogenesis in MFOC, and (ii) seeding the bulk tissue interfaces with a confluent endothelium to stimulate self-assembly of perfusable anastomoses with the internal vasculature. Comparison of rocker- and pump-based protocols for flow-conditioning of anastomosed vascular beds revealed that continuous pump-driven flow is required for reproducible barrier maturation throughout the 3D tissue bulk. Demonstrated applications include nanoparticle perfusion and engineering perfusable tumor vasculature. These easily adaptable methods for designing and fabricating vascularized microphysiological systems can accelerate their adoption in a diverse range of preclinical laboratory settings.

含有可灌注血管床的微生理系统(MPS)开启了在体外模拟血管生理和疾病的组织尺度元素的能力。现在,使用廉价的立体光刻(SLA) 3D打印机可以在台式制造聚二甲基硅氧烷(PDMS)器官芯片,从而消除了对洁净室访问和微制造专业知识的需求,并且可以促进MPS方法在临床前研究中的广泛采用。器官芯片模具设计的快速原型设计加速了设计、测试和迭代的过程,但SLA树脂打印的几何畸变和表面粗糙度会阻碍标准化制造工作流程的发展。本研究报告了制造sla打印模具的后处理程序,该模具可生产完全固化,平整,专利粘合和光学透明的聚二甲基硅氧烷(PDMS)器官芯片。进行了注射加载试验,以确定毫尺度无膜器官芯片(MFOC)设计,该设计允许目标最终用户可重复加载设备,这是临床前研究中广泛采用非专家的关键要求。优化的毫级MFOC设计用于开发组织工程方案:(1)在MFOC中驱动大块组织血管生成,(2)在大块组织界面上播种融合内皮,以刺激可灌注吻合器与内部血管的自组装。对基于摇臂和泵的吻合血管床流动调节方案的比较表明,在整个3D组织体中,需要连续的泵驱动流动来实现可复制的屏障成熟。演示应用包括纳米颗粒灌注和工程可灌注肿瘤血管。这些易于适应的设计和制造血管化微生理系统的方法可以加速它们在各种临床前实验室环境中的采用。
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引用次数: 0
Engineering VIGS Vectors by Modifying Movement Proteins of the 30K Family 利用30K家族运动蛋白修饰VIGS载体。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-22 DOI: 10.1002/biot.202400584
David Villar-Álvarez, José A. Navarro, Vicente Pallas, Jesús Ángel Sanchez-Navarro

Virus-induced gene silencing (VIGS) represents a particularly relevant tool in agricultural species for studying gene functionality. This study presents a novel approach for utilizing viruses belonging to the 30K family of movement proteins (MPs) as VIGS vectors. The method described here employs smaller inserts (54 bp or less) than those commonly used (100–500 bp). The developed strategy involves modifying 30K family MPs to introduce heterologous sequences of the gene of interest into their coding sequence. This approach enabled the successful induction of gene silencing in Nicotiana tabacum and Nicotiana benthamiana. Three representative viruses of the MP 30K family, alfalfa mosaic virus (AMV), cucumber mosaic virus (CMV), and tobacco mosaic virus (TMV) were employed. The capacity to induce gene silencing of small inserts (18–54 bp) was investigated, enabling to establish a correlation between insert size and silencing efficacy. This allowed the system to be calibrated to achieve partial silencing levels. The relationship between viral encapsidation and the level of gene silencing was also investigated, revealing that a high efficiency of viral encapsidation results in a reduction in the level of gene silencing achieved. Considering these findings, it can be concluded that the approach carried out with AMV, CMV, and TMV could be applied to other members of the MP 30K family. The MP 30K family comprises 20 viral genera and over 500 viral species, which can infect all agronomically significant plant species. Consequently, the strategy presented in this work could be applied to a wide range of relevant hosts.

病毒诱导的基因沉默(VIGS)是研究农业物种基因功能的一种特别相关的工具。本研究提出了一种利用30K运动蛋白(MPs)家族病毒作为VIGS载体的新方法。本文描述的方法采用比常用的插入(100-500 bp)更小的插入(54 bp或更小)。开发的策略包括修改30K家族MPs,将感兴趣的基因的异源序列引入其编码序列。这种方法成功地诱导了烟草和本烟的基因沉默。MP 30K家族的3种代表性病毒:苜蓿花叶病毒(AMV)、黄瓜花叶病毒(CMV)和烟草花叶病毒(TMV)。研究了小插入片段(18-54 bp)诱导基因沉默的能力,从而建立了插入片段大小与沉默效果之间的相关性。这样就可以对系统进行校准,以达到部分消声水平。我们还研究了病毒囊化与基因沉默水平之间的关系,发现高效率的病毒囊化导致基因沉默水平的降低。考虑到这些发现,可以得出结论,对AMV、CMV和TMV进行的方法可以应用于MP 30K家族的其他成员。mp30k家族包括20个病毒属和500多个病毒种,可以感染所有具有重要农艺意义的植物物种。因此,这项工作中提出的策略可以应用于广泛的相关宿主。
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引用次数: 0
GOLPH3-STIP1 Complex Activates STAT3 Through Exosome Secretion to Induce Colon Cancer Metastasis GOLPH3-STIP1复合物通过外泌体分泌激活STAT3诱导结肠癌转移
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-22 DOI: 10.1002/biot.202400563
Yanta Guo, Zhongshi Hong, Sifu Huang, Yuze Wu, Chengzhi Qiu, Jianhua Xu

With a high mortality rate, colon cancer (CC) is the third most common malignant tumor worldwide. The primary causes are thought to be the high invasiveness and migration of CC cells. The functions of Golgi phosphoprotein 3 (GOLPH3), stress-induced phosphoprotein 1 (STIP1), and the signal transducer and activator of transcription 3 (STAT3) signaling pathway in the invasion and migration of CC cells were examined in this study. We collected the exosomes by high-speed centrifugation. The expressions of GOLPH3, STIP1, and epithelial-mesenchymal transition (EMT)-related proteins in CC tissues, cells, and exosomes were analyzed using Western blotting (WB) experiments. The abilities of CC cell invasion and migration were evaluated by the Transwell assay. The binding relationship between GOLPH3 and STIP1 was validated through Co-immunoprecipitation (Co-IP), and their sublocalization in CC cells was determined by immunofluorescence detection under laser confocal microscopy. Immunohistochemistry (IHC) experiments detected the expression levels of each protein in the transplanted tumor mass. Animal experiments confirmed the impact of the GOLPH3/STIP1/STAT3 regulatory axis on CC growth. We found that in CC tissues and cells, GOLPH3 was highly expressed, and silencing GOLPH3 not only greatly reduced CC cell invasion and migration but also prevented EMT. Furthermore, GOLPH3 and STIP1 interacted in CC cells, and the GOLPH3-STIP1 complex affected the capacity for cell invasion and migration by triggering the STAT3 signaling pathway. Noteworthily, GOLPH3, and STIP1 could also be detected in CC cell exosomes, and the exosomes carried the GOLPH3-ST1P1 complex to act on CC cells to activate intracellular STAT3 signaling, ultimately affecting the cancer cell migration and invasion. The above molecular regulatory mechanisms have also been validated in mice. In conclusion, the GOLPH3-STIP1 complex acted on surrounding CC cells through exosomes and activated the STAT3 signaling pathway to stimulate CC cell invasion and migration.

结肠癌(CC)死亡率高,是全球第三大最常见的恶性肿瘤。主要原因被认为是CC细胞的高侵袭性和迁移性。本研究探讨了高尔基磷酸化蛋白3 (GOLPH3)、应激诱导磷酸化蛋白1 (STIP1)和转录信号转导和激活因子3 (STAT3)信号通路在CC细胞侵袭和迁移中的作用。我们通过高速离心收集外泌体。采用Western blotting (WB)实验分析CC组织、细胞和外泌体中GOLPH3、STIP1和上皮间充质转化(epithelial-mesenchymal transition, EMT)相关蛋白的表达。采用Transwell法评价CC细胞的侵袭和迁移能力。通过共免疫沉淀(Co-IP)验证GOLPH3和STIP1的结合关系,并在激光共聚焦显微镜下通过免疫荧光检测确定其在CC细胞中的亚定位。免疫组化(IHC)实验检测各蛋白在移植肿瘤块中的表达水平。动物实验证实了GOLPH3/STIP1/STAT3调控轴对CC生长的影响。我们发现,在CC组织和细胞中,GOLPH3高表达,沉默GOLPH3不仅可以大大减少CC细胞的侵袭和迁移,还可以阻止EMT。此外,GOLPH3和STIP1在CC细胞中相互作用,GOLPH3-STIP1复合物通过触发STAT3信号通路影响细胞侵袭和迁移的能力。值得注意的是,GOLPH3和STIP1也可以在CC细胞外泌体中检测到,并且外泌体携带GOLPH3- st1p1复合物作用于CC细胞激活细胞内STAT3信号,最终影响癌细胞的迁移和侵袭。上述分子调控机制在小鼠中也得到了验证。综上所述,GOLPH3-STIP1复合物通过外泌体作用于周围CC细胞,激活STAT3信号通路,刺激CC细胞侵袭和迁移。
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引用次数: 0
Advancements in Plant Gene Editing Technology: From Construct Design to Enhanced Transformation Efficiency 植物基因编辑技术的进展:从构建设计到提高转化效率。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-18 DOI: 10.1002/biot.202400457
Pu Yuan, Muhammad Usman, Wenshan Liu, Ashna Adhikari, Chunquan Zhang, Victor Njiti, Ye Xia

Plant gene editing technology has significantly advanced in recent years, thereby transforming both biotechnological research and agricultural practices. This review provides a comprehensive summary of recent advancements in this rapidly evolving field, showcasing significant discoveries from improved transformation efficiency to advanced construct design. The primary focus is on the maturation of the Clustered regularly interspaced short palindromic repeats/CRISPR-associated protein (CRISPR/Cas)9 system, which has emerged as a powerful tool for precise gene editing in plants. Through a detailed exploration, we elucidate the intricacies of integrating genetic modifications into plant genomes, shedding light on transport mechanisms, transformation techniques, and optimization strategies specific to CRISPR constructs. Furthermore, we explore the initiatives aimed at extending the frontiers of gene editing to nonmodel plant species, showcasing the growing scope of this technology. Overall, this comprehensive review highlights the significant impact of recent advancements in plant gene editing, illuminating its transformative potential in driving agricultural innovation and biotechnological progress.

近年来,植物基因编辑技术取得了重大进展,从而改变了生物技术研究和农业实践。这篇综述全面总结了这一快速发展领域的最新进展,展示了从提高转化效率到先进结构设计的重大发现。主要焦点是聚集规律间隔短回文重复序列/CRISPR相关蛋白(CRISPR/Cas)9系统的成熟,该系统已成为植物精确基因编辑的强大工具。通过详细的探索,我们阐明了将遗传修饰整合到植物基因组中的复杂性,揭示了CRISPR构建体特有的转运机制、转化技术和优化策略。此外,我们探讨了旨在将基因编辑的前沿扩展到非模式植物物种的举措,展示了这项技术日益扩大的范围。总的来说,这篇全面的综述强调了植物基因编辑最新进展的重大影响,阐明了其在推动农业创新和生物技术进步方面的变革潜力。
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引用次数: 0
Visualize PIM-1 Protein Function and Its Interaction With PI3K/Akt/mTOR Pathway Regulated by Its Active Sites Through FRET Biosensors 通过 FRET 生物传感器观察 PIM-1 蛋白的功能及其与受其活性位点调控的 PI3K/Akt/mTOR 通路的相互作用。
IF 3.2 3区 生物学 Q2 BIOCHEMICAL RESEARCH METHODS Pub Date : 2024-12-18 DOI: 10.1002/biot.202400443
Na Li, Youyi Zhao, Danbo Wang, Shuai Shao, Zhengyao Zhang, Bo Liu

Pro-viral Insertion site for the Moloney Murine Leukemia virus 1 (PIM-1) is widely involved in various biological processes and diseases, which is based on its structure and functional sites. However, the relationship between active sites and function of PIM-1 kinase remains unclear due to the lack of effective study approaches in live cells. Herein, to visualize the effect of different active sites in PIM-1 protein on its function activity and relation with PI3K/Akt/mTOR pathway, three mutant probes of EPHY which was developed previously based on fluorescence resonance energy transfer (FRET) technology to detect PIM-1 kinase activity in living cells were further constructed and transfected into cells followed by treating with PIM-1 inhibitors, ATP and PI3K inhibitor, respectively. The results showed that Lys67 is related to substrate binding and catalytic activity of PIM-1 kinase, thereby directly regulating PI3K/Akt/mTOR signaling pathway. Pro81/Asn82 are primarily participated in PIM-1 binding to ATP, thus also involving in the modulation on PI3K/Akt/mTOR signaling pathway, but play less role in the interaction between PIM-1 protein and its substrate. Asp167 has few effects on both the catalytic function activity of PIM-1 and PI3K/AKT/mTOR pathway, even though the binding ability of PIM-1 protein to its substrate is dramatically inhibited by D167A mutation. Altogether, the mutant probes works well as visualization tools to unearth the function of active sites in PIM-1 kinase, not only facilitating the further clarification of molecular mechanism underlying PIM-1 related signaling pathways, but also shedding light on drug development and disease therapy targeting PIM-1 protein.

Moloney小鼠白血病病毒1 (PIM-1)的前病毒插入位点广泛参与各种生物过程和疾病,这是基于其结构和功能位点。然而,由于缺乏有效的活细胞研究方法,PIM-1激酶活性位点与功能之间的关系尚不清楚。为了观察PIM-1蛋白不同活性位点对其功能活性的影响及其与PI3K/Akt/mTOR通路的关系,我们进一步构建了基于荧光共振能量转移(FRET)技术检测活细胞中PIM-1激酶活性的3个EPHY突变体探针,并将其转染细胞,分别用PIM-1抑制剂、ATP和PI3K抑制剂处理。结果表明,Lys67与PIM-1激酶的底物结合和催化活性有关,从而直接调控PI3K/Akt/mTOR信号通路。Pro81/Asn82主要参与PIM-1与ATP的结合,也参与PI3K/Akt/mTOR信号通路的调节,但较少参与PIM-1蛋白与其底物的相互作用。尽管PIM-1蛋白与其底物的结合能力被D167A突变显著抑制,但Asp167对PIM-1和PI3K/AKT/mTOR通路的催化功能活性影响不大。总之,突变体探针可以很好地作为可视化工具,揭示PIM-1激酶活性位点的功能,不仅有助于进一步阐明PIM-1相关信号通路的分子机制,而且为靶向PIM-1蛋白的药物开发和疾病治疗提供线索。
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