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Quantitative PCR Analysis of Haemosporidian Infection Intensity in a Temperate Bird Community 温带鸟类带孢子虫感染强度的定量PCR分析。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-18 DOI: 10.1111/1749-4877.13031
Alžbeta Šujanová, Eva Špitalská, Radovan Václav

Avian haemosporidians are vector-borne parasites with complex transmission dynamics influenced by host ecology and environmental factors. Both prevalence and parasitemia are key measures in host–parasite studies. While prevalence reflects the proportion of infected individuals in a population, parasitemia provides insights into the intensity of infection within hosts, offering a different but complementary perspective. In this study, we used quantitative PCR (qPCR) to investigate seasonal and interannual variation in haemosporidian infection intensity among 266 individuals from six bird species in a temperate woodland in Slovakia over 3 years (2017–2019). We focused on the four most abundant taxonomic groups: Erithacus rubecula, Sylvia atricapilla, two parid species (Parus major, Cyanistes caeruleus), and two turdid species (Turdus merula, T. philomelos). Our results revealed distinct, taxon-specific seasonal trajectories. Turdid species showed similar unimodal summer peaks, whereas parids lacked early spring infections and exhibited a steady decline from summer to autumn. E. rubecula demonstrated a gradual increase across the season, while S. atricapilla showed a bimodal pattern with peaks in late spring and early autumn. Spring intensities were highest in 2017–2018, likely due to relapse or new infections, and lowest in 2019, coinciding with warmer and wetter conditions. These findings highlight how seasonal variation in environmental conditions, such as temperature and precipitation, interacts with host life history to shape infection intensity patterns. Our study emphasizes the importance of integrating ecological context with molecular tools to better understand haemosporidian dynamics in wild bird populations.

禽血孢子虫是一种受宿主生态和环境因素影响的媒介传播寄生虫,其传播动力学复杂。流行率和寄生虫血症是宿主-寄生虫研究的关键指标。流行率反映了受感染个体在人口中所占的比例,而寄生虫病提供了对宿主内感染强度的见解,提供了一个不同但互补的视角。本研究采用定量PCR (qPCR)方法,分析了斯洛伐克温带林地6种鸟类266只血孢子虫感染强度的季节和年际变化。我们重点研究了4个最丰富的分类类群:Erithacus rubecula, Sylvia atricapilla, 2个Parus major, Cyanistes caeruleus和2个Turdus merula, T. philomelos。我们的结果揭示了不同的、特定分类群的季节轨迹。土鸡种呈单峰型夏季高峰,而雌鸟缺乏早春感染,从夏季到秋季呈稳定下降趋势。风疹菌在整个季节呈逐渐增加的趋势,而毛毛菌在春末秋初呈双峰分布。2017-2018年春季强度最高,可能是由于复发或新感染,2019年最低,与温暖潮湿的条件相一致。这些发现强调了温度和降水等环境条件的季节性变化如何与宿主生活史相互作用,从而形成感染强度模式。我们的研究强调了将生态环境与分子工具相结合的重要性,以更好地了解野生鸟类种群中的血孢子虫动态。
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引用次数: 0
Treasure Chest in the Taxonomic Collection: Molecular Characterization and Redescription of Haemoproteus handai, with Insights into the Phylogenetic Relationship of Haemosporidian Parasites of Parrots (Psittaciformes) 分类宝库:汉代嗜血杆菌的分子特征和重新描述,以及鹦鹉嗜血杆菌寄生虫系统发育关系的认识。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-18 DOI: 10.1111/1749-4877.13023
Mélanie Duc, Tatjana Iezhova, Gediminas Valkiūnas, Irène Landau, Linda Duval

Many species of avian haemosporidian parasites have been described before molecular assessment of the infections became available. This created a discrepancy between the number of parasite species described (∼300) and the available molecular information (∼5100 lineages), with numerous morphospecies having no molecular characterization and vice versa. Lethal disease was previously reported in parrots due to the abortive development of Haemoproteus species in muscular tissues. However, the disease etiology on the parasite species levels remains insufficiently understood. This study developed molecular characterization and redescription of Haemoproteus handai Maqsood, 1943 from a blossom-headed parakeet (Psittacula roseata Biwas, 1951) sampled in Thailand (1979) and deposited at the Museum national d'Histoire naturelle in Paris, France. Blood smears and histological preparations were screened, and the cryopreserved blood was used for DNA extraction and PCR tests. The host species was confirmed, and a new cytochrome b lineage hPSIROS01 was found and attributed to H. handai. Tissue stages were present in the muscular tissues of the pectoral muscles, heart, and tongue. Parrot parasite lineages appeared in different clusters. Haemoproteus species present in the cluster with hPSIROS01 also developed tissue stages mostly in muscular tissues, suggesting that phylogenies based on the partial cytochrome b gene could be used to predict pathologies. More studies are necessary to further understand the patterns of Haemoproteus species development in parrots, particularly if the parrot haemoproteids would always develop in muscular tissues, and whether they are specific or not to parrots. We encourage researchers to deposit animal samples and their parasite samples in museum collections for future research.

在对感染进行分子评估之前,已经描述了许多种禽血孢子虫寄生虫。这造成了描述的寄生虫物种数量(~ 300)与可用的分子信息(~ 5100个谱系)之间的差异,许多形态物种没有分子表征,反之亦然。致命的疾病,以前报道在鹦鹉由于失败的发展血红蛋白物种在肌肉组织。然而,在寄生虫种类水平上的疾病病因学仍不充分了解。本研究对泰国(1979年)一只花头鹦鹉(Psittacula roseata Biwas, 1951年)1943年的Haemoproteus handai Maqsood进行了分子鉴定和重新描述,并保存在法国巴黎国家自然历史博物馆。筛选血涂片和组织标本,冷冻保存血进行DNA提取和PCR检测。经鉴定,发现了一个新的细胞色素b系hPSIROS01,并将其归属于汉代血吸虫。组织阶段存在于胸肌、心脏和舌头的肌肉组织中。鹦鹉寄生虫谱系出现在不同的聚类中。携带hPSIROS01的群中的变形血红菌也主要在肌肉组织中发育组织阶段,这表明基于部分细胞色素b基因的系统发育可用于预测病理。为了进一步了解鹦鹉血红蛋白种类的发育模式,特别是鹦鹉血红蛋白是否总是在肌肉组织中发育,以及它们是否为鹦鹉所特有,还需要进行更多的研究。我们鼓励研究人员在博物馆收藏动物样本及其寄生虫样本,以备将来的研究。
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引用次数: 0
Colour Morphs as Alternative Solutions to the Trade-Off Predicted by the Immuno-Competence Handicap Hypothesis. 颜色变化作为免疫能力障碍假说预测的权衡的替代解决方案。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-11 DOI: 10.1111/1749-4877.13028
Roberto Sacchi, Alan J Coladonato, Stefano Scali, Marco A L Zuffi, Rupert Palme, Marco Mangiacotti

Colour morphs in polymorphic species are associated with a suite of heritable traits governed by distinct genetic loci, each corresponding to alternative fitness peaks. Hormonal pleiotropy has been proposed as a mechanism maintaining these morphs, though experimental evidence is lacking. In this study, we tested whether white and yellow morphs of the common wall lizard (Podarcis muralis) adopt alternative strategies shaped by the immuno-competence handicap hypotheses (ICHH). Specifically, we experimentally elevated plasma testosterone levels via transdermal administration and measured changes in (i) immune response using phytohaemagglutinin (PHA) swelling and (ii) the aggressive behaviour in response to a mirror test simulating territorial intrusion. We found that testosterone-induced immune suppression was stronger in white males, while aggression decreased in both morphs. Elevated testosterone eliminated the baseline differences between morphs in both immunity and aggression. These findings provide the first experimental support for morph-specific life-history strategies in common wall lizards, consistent with the ICHH: Yellow males prioritize aggression over immunity, while white males invest more in survival at the cost of competitiveness.

多态物种的颜色变异与一系列由不同遗传位点控制的可遗传性状有关,每个位点对应于可选择的适合度峰值。激素多效性被认为是维持这些形态的一种机制,尽管缺乏实验证据。在这项研究中,我们测试了普通壁虎(Podarcis muralis)的白色和黄色变种是否采用免疫能力障碍假说(ICHH)形成的替代策略。具体来说,我们通过经皮给药实验提高了血浆睾酮水平,并测量了(i)使用植物血凝素(PHA)肿胀的免疫反应和(ii)模拟领土入侵的镜像测试反应中的攻击行为的变化。我们发现睾酮诱导的免疫抑制在白人雄性中更强,而攻击性在两种变异中都有所下降。睾酮水平升高消除了异型之间在免疫力和攻击性方面的基线差异。这些发现为普通壁虎的形态特异性生活史策略提供了第一个实验支持,与ICHH一致:黄色雄性优先考虑攻击而不是免疫,而白色雄性则以竞争力为代价更多地投资于生存。
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引用次数: 0
Response of Fecal Bacteria and Fungi to Tannin-Rich Diets in Sika Deer (Cervus nippon): Evidence from Both Feeding Experiments and Field Investigations. 梅花鹿粪便细菌和真菌对富含单宁饲料的反应:来自饲养试验和实地调查的证据。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-06 DOI: 10.1111/1749-4877.13010
Di Zhu, Feng Wu, Peiying Wen, Haiyang Gao, Xiaoran Hao, Hongfang Wang

The rumen microbes of large mammalian herbivores (LMHs) play a critical role in resisting the chemical defenses of plants, such as tannins, but whether fecal microbes in LMHs function in this adaptive process remains unclear. Despite ample studies over the past decade have focused mainly on bacteria, the role of fungi in the response to tannins requires more attention. Additionally, most previous studies have been restricted to captive herbivores, and we still do not know much about those in the wild. To understand the role of fecal bacteria and fungi in plant‒herbivore interactions, we first tested the response and variation in the response of fecal bacteria and fungi to different concentrations of tannin-rich food using 16S/ITS rRNA data in feeding experiments with sika deer (Cervus nippon). For wild sika deer in Northeast Tiger and Leopard National Park, we observed seasonal differences in the tannin content of their diets, which was significantly higher in spring than in autumn. Interestingly, the pattern of the fecal bacteria in wild sika deer response to tannin-rich diets was similar to that observed in the feeding experiments but showed variation in fungi. Feeding with tannin-rich diets altered the fecal microbial composition and increased the relative abundance of tannin-degrading microbes. We hypothesize that fecal bacteria and fungi may play important roles in helping LMHs adapt to tannin-rich diets. We need to further explore the function of microbes to provide important insights into the role of fecal microbes in plant chemical defenses and herbivore co-evolution.

大型食草动物(LMHs)的瘤胃微生物在抵抗植物的化学防御(如单宁)中起着关键作用,但LMHs中的粪便微生物是否在这一适应过程中起作用尚不清楚。尽管过去十年的大量研究主要集中在细菌上,但真菌在单宁反应中的作用需要更多的关注。此外,大多数先前的研究仅限于圈养的食草动物,我们对野生动物的了解仍然不多。为了了解粪便细菌和真菌在植物-草食相互作用中的作用,我们首先利用16S/ITS rRNA数据在梅花鹿饲养实验中测试了粪便细菌和真菌对不同浓度富含单宁的食物的反应及其变化。对东北虎豹国家公园的野生梅花鹿,我们观察到其饮食中单宁含量的季节差异,春季明显高于秋季。有趣的是,野生梅花鹿的粪便细菌对富含单宁的食物的反应模式与饲养实验中观察到的相似,但真菌有所不同。饲喂富含单宁的饲料改变了粪便微生物组成,增加了单宁降解微生物的相对丰度。我们假设粪便细菌和真菌可能在帮助LMHs适应富含单宁的饮食中发挥重要作用。我们需要进一步探索微生物的功能,为了解粪便微生物在植物化学防御和草食动物共同进化中的作用提供重要的见解。
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引用次数: 0
Differences in Habitat Quality Drive Behavioral Contrasts in Two Family Groups of the Critically Endangered Hainan Gibbon (Nomascus hainanus). 极度濒危海南长臂猿两科群栖息地质量差异驱动行为差异
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-06 DOI: 10.1111/1749-4877.13013
Shuai Liu, Dexu Zhang, Eric I Ameca, Guangyu Wang, Chenglin Cai, Wenxing Long, Yuan Chen, Shrestha Anil

Understanding how spatiotemporal habitat variability shapes endangered species' behavior is crucial for effective conservation. This study examined the impact of fine-scale habitat variation on four behavioral patterns (feeding, resting, social, and traveling) of the critically endangered Hainan gibbon. Year-round behavior data were collected from two groups: GC inhabiting an area with abundant food resources, and GE in a secondary forest with sparse resources. Using 135 monitoring plots, we analyzed variation in 27 habitat variables categorized into food, nutrients, plant diversity, safety and stability, and topography. Linear models revealed crown height, food plant abundance, and crude fat as key variables shaping behaviors. Higher community plant and food plant richness significantly enhanced feeding frequency, while steeper slopes increased traveling. Habitat quality variation shaped distinct behavioral strategies: in GC, feeding and resting were primarily influenced by food, social behavior by safety and stability, and traveling by plant diversity. In GE, resting, social, and traveling behaviors were mainly driven by topography, while feeding was influenced by nutrients. Likewise, food variables dominated during the dry season, whereas safety and stability, and topography variables were more important in the wet season. This study provides the first analysis of Hainan gibbons' behavioral strategies linked to fine-scale habitat variability and seasonal dynamics. The findings highlight the importance of protecting diverse habitats, as different Hainan gibbon groups exhibit distinct behavioral adaptations to their varying resource availability. This underscores the need for habitat-specific primate conservation and management in fragmented landscapes.

了解栖息地时空变化如何影响濒危物种的行为对有效保护至关重要。本文研究了栖息地的细微尺度变化对海南濒危长臂猿四种行为模式(进食、休息、社交和旅行)的影响。全年行为数据采集两组:生活在食物资源丰富地区的GC和生活在资源稀少的次生林中的GE。利用135个监测样地,分析了食物、营养、植物多样性、安全性和稳定性以及地形等27个生境变量的变化。线性模型显示树冠高度、食物植物丰度和粗脂肪是影响行为的关键变量。较高的群落植物和食物植物丰富度显著提高了取食频率,而陡坡增加了旅行。生境质量的变化形成了不同的行为策略:GC的摄食和休息主要受食物的影响,社会行为主要受安全和稳定的影响,旅行主要受植物多样性的影响。在GE中,休息、社交和旅行行为主要受地形驱动,而摄食行为主要受营养物质的影响。同样,在旱季,食物变量占主导地位,而在雨季,安全性和稳定性以及地形变量更为重要。本研究首次分析了海南长臂猿的行为策略与精细尺度栖息地变异和季节动态的关系。研究结果强调了保护不同栖息地的重要性,因为不同的海南长臂猿群体对不同的资源可用性表现出不同的行为适应。这强调了在碎片化景观中对生境特定的灵长类动物进行保护和管理的必要性。
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引用次数: 0
Starving or Stuffing? Plasticity in Wild Boar Body Mass Variations During Summer in a Mediterranean Area. 饥饿还是填塞?地中海地区夏季野猪体重变化的可塑性。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-06 DOI: 10.1111/1749-4877.13012
Martina Calosi, Niccolò Fattorini, Andrea Sforzi, Luca Tonini, Francesco Ferretti

Identifying determinants of key phenotypic indicators driving animal population dynamics is fundamental to address measures aimed at mitigating human-wildlife interactions. In Mediterranean areas, summer drought reduces the availability of water and food resources for wild ungulates, potentially affecting body conditions. Since summer is a crucial period for the nursing/weaning of offspring, a seasonal bottleneck for ungulates would be expected to occur, especially in females. However, data on fluctuations of ungulate body mass during summer are scarce. We investigated the effects of summer progression, aridity, population density, and land use on body mass variation of adult/yearling wild boar (Sus scrofa) in a mixed forested-rural Mediterranean protected area, over a 16-year period (2007-2022). Data were gathered from individuals harvested during population control management actions, in summer. In contrast with our predictions, no consistent mass loss was observed throughout the summer. According to expectations, body mass was favored by decreasing aridity in the previous 3 months. In males, the positive effect of rainfall was mitigated by population density. Females experienced mass gain in non-arid years, mass loss in arid years, and no change in "average" years. The importance of edge habitats located at the interface between wooded and cultivated areas was confirmed by a positive relationship between female body mass and ecotone availability. The results indicate that, in a mixed forested-rural area, wild boar could maintain, or even increase, their body mass during summer. Moreover, findings emphasize the crucial role of rainfall in modulating a key driver of population dynamics for this ungulate in Mediterranean areas.

确定驱动动物种群动态的关键表型指标的决定因素对于解决旨在减轻人类与野生动物相互作用的措施至关重要。在地中海地区,夏季干旱减少了野生有蹄类动物的水和食物资源,可能影响身体状况。由于夏季是哺乳/断奶的关键时期,有蹄类动物预计会出现季节性瓶颈,尤其是雌性动物。然而,关于有蹄类动物体重在夏季波动的数据很少。在2007-2022年的16年时间里,研究了地中海森林-农村混合保护区夏季进展、干旱、人口密度和土地利用对成年/一岁野猪(Sus scrofa)体重变化的影响。数据收集于夏季人口控制管理行动期间收获的个体。与我们的预测相反,整个夏天没有观测到持续的质量损失。根据预期,在前3个月,身体质量受到干旱减少的影响。在雄性中,降雨的积极作用被种群密度所减弱。雌性在非干旱年份体重增加,在干旱年份体重减少,“平均”年份没有变化。女性体重与交接带有效性呈正相关关系,证实了位于林地和耕地交界的边缘生境的重要性。结果表明,在森林与农村混合的地区,野猪在夏季可以保持甚至增加体重。此外,研究结果强调了降雨在调节地中海地区这种有蹄类动物种群动态的关键驱动因素中的关键作用。
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引用次数: 0
Analysis of the Effects of Hydrometeorological Conditions on Flea Indices of Two Rodent Species in Inner Mongolia 水文气象条件对内蒙古两种啮齿动物蚤指数的影响分析。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-08-06 DOI: 10.1111/1749-4877.13025
Meng Shang, Haoqiang Ji, Zhenxu Wang, Xiaoxu Wang, Pengbo Liu, Ke Li, Chenran Guo, Wanjun Jiang, Lu Wang, Ying Liang, Qiyong Liu

Climate change has modified hydrometeorological patterns, influencing plague transmission risks in Inner Mongolia. Using 2013–2021 plague surveillance data from 12 regions in Inner Mongolia, we assessed drought and wet conditions’ effects on flea parasitism in two key rodents: Mongolian gerbil (Meriones unguiculatus) and Daurian ground squirrel (Spermophilus dauricus). Extreme gradient boosting (XGBoost) modeling revealed the Standardized Precipitation Evapotranspiration Index (SPEI), maximum ground surface temperature, average relative humidity, average sunshine duration, and maximum wind speed collectively explained 52.60% of generalized flea index variation (SPEI contribution: 14.13%). Distributed lag non-linear model (DLNM) analysis revealed that drought conditions cumulatively increased generalized flea indices, particularly moderate drought (SPEI = −1.8), which showed a significant lagged effect on generalized flea indices after 3 months (RR = 2.76, 95% CI: 1.78–4.27). Conversely, the cumulative effects of wet conditions were detrimental to the increase in generalized flea indices. In addition to exhibiting the generalized flea index characteristics under drought conditions, the plague vectors Nosopsyllus laeviceps and Xenopsylla conformis parasitic on M. unguiculatus showed a facilitative effect in the 3rd month following severe wet conditions, with effect sizes of relative risk (RR) = 1.97 (95% CI: 1.13–3.45) and RR = 5.96 (95% CI: 3.25–10.94), respectively. With increasing drought severity, the flea index of M. unguiculatus rose significantly after a 3-month lag, with Z-test statistics of 2.16 (SPEI_3 = −1) and 2.63 (SPEI_3 = −1.5), both p < 0.05. Under severe drought (SPEI_3 = −1.5), the cumulative RR showed a significant difference in the two rodent species (Z = 2.27, p < 0.05). Therefore, it is essential to proactively monitor drought conditions in Inner Mongolia, particularly during the 3 months following a drought, and special attention should be paid to the increased abundance of Nosopsyllus laeviceps and Xenopsylla conformis in the 3rd month following severe wet conditions.

气候变化改变了水文气象模式,影响了内蒙古鼠疫传播风险。利用2013-2021年内蒙古12个地区的鼠疫监测数据,评估了干旱和潮湿条件对蒙古沙鼠(Meriones unguiculatus)和达斡尔地松鼠(spermoophilus dauricus)两种主要啮齿动物跳蚤寄生的影响。极端梯度增强(XGBoost)模型显示,标准化降水蒸散发指数(SPEI)、最高地表温度、平均相对湿度、平均日照时数和最大风速共同解释了广义蚤指数变化的52.60% (SPEI贡献14.13%)。分布滞后非线性模型(DLNM)分析显示,干旱条件对3个月后蚤类指数有显著的滞后效应(RR = 2.76, 95% CI: 1.78 ~ 4.27),特别是中度干旱条件(SPEI = -1.8)对蚤类指数有显著的滞后效应。相反,潮湿环境的累积效应不利于蚤类指数的增加。除在干旱条件下表现出广义蚤指数特征外,在严重潮湿条件下,寄生于爪毛鼠身上的laevicnosopsius和Xenopsylla conformis在3个月内表现出促进作用,相对风险效应值(RR)分别为1.97 (95% CI: 1.13-3.45)和5.96 (95% CI: 3.25-10.94)。随着干旱程度的增加,爪鼠蚤指数滞后3个月后显著上升,z检验统计量分别为2.16 (SPEI_3 = -1)和2.63 (SPEI_3 = -1.5), p均< 0.05。在严重干旱条件下(SPEI_3 = -1.5),两种鼠类累积RR差异显著(Z = 2.27, p < 0.05)。因此,应积极监测内蒙古地区的干旱情况,特别是在干旱后的3个月内,尤其应注意在严重潮湿条件后的第3个月,laevepeps nosopsylus和Xenopsylla conformis的丰度增加。
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引用次数: 0
Spatial Partitioning Among Three Sympatric Ungulates in the Tibetan Plateau: Identifying Critical Variables. 青藏高原三种同域有蹄类动物的空间划分:关键变量的识别。
IF 3.7 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-29 DOI: 10.1111/1749-4877.13020
Rumei Zhang, Jianbin Shi, Jinming Zhang, Dongyu Wang

Spatial dimensions play a significant role in niche differentiation, facilitating species coexistence. Understanding how sympatric ungulates optimize habitat utilization and how they co-exist in resource-limited environments is essential for effective wildlife conservation and reserve management. Tibetan antelope (chiru, Pantholops hodgsonii), Tibetan wild ass (kiang, Equus kiang), and wild yak (Bos grunniens) are sympatric ungulates co-evolving over generations across the Tibetan Plateau, but limited information is available on their spatial partitioning and the key variables affecting both single-species and multi-species distributions. In this study, using a combination of maximum entropy model, joint species distribution models, and random forest analysis, we examined the spatial partitioning of the three ungulates and identified the critical factors influencing their distributions with their spatial distribution data collected from the Arjin Shan National Nature Reserve in the Tibetan Plateau. Our key findings: (i) Notable differences were observed in the spatial distributions of the three ungulates, with only 16% overlap in their suitable habitats. Temperature had a stronger influence on the habitat selection by chiru and kiang, whereas precipitation played a more significant role in determining the distributions of kiang and wild yak. (ii) During summer, the interspecific relationships between chiru and wild yak, and between chiru and kiang exhibited positive correlations, while the relationship between wild yak and kiang was negatively correlated. In winter, all interspecific relationships were negatively correlated. (iii) Temperature seasonality and mean temperature of the driest quarter emerged as the most critical variables influencing multi-species habitat selection. Human interference had a significantly negative impact on all three ungulate species. Our findings underscore the importance of spatial heterogeneity in facilitating species coexistence under both climatic and anthropogenic pressures, offering valuable insights for multi-species conservation planning in resource-limited ecosystems.

空间维度在生态位分化中起重要作用,有利于物种共存。了解同域有蹄类动物如何优化栖息地利用,以及它们如何在资源有限的环境中共存,对有效的野生动物保护和保护区管理至关重要。藏羚羊(chiru, Pantholops hodgsonii)、西藏野驴(kiang, Equus kiang)和野牦牛(Bos grunniens)是青藏高原共域进化的有蹄类动物,但它们的空间划分和影响单种和多种分布的关键变量的信息有限。本文采用最大熵模型、联合物种分布模型和随机森林分析相结合的方法,对青藏高原阿尔金山国家级自然保护区三种有蹄类动物的空间分布特征进行了分析,并找出了影响其空间分布的关键因素。主要发现:(1)三种有蹄类动物在空间分布上存在显著差异,在适宜栖息地重叠的比例仅为16%;温度对牦牛和野牦牛的生境选择影响较大,而降水对野牦牛和野牦牛的分布影响较大。(2)夏季,chiru与野牦牛、chiru与江的种间关系呈正相关,而野牦牛与江的种间关系呈负相关。冬季各种间亲缘关系呈负相关。(三)温度季节性和最干旱季度的平均温度成为影响多物种生境选择的最关键变量。人类干预对三种有蹄类动物均有显著的负面影响。我们的研究结果强调了空间异质性在气候和人为压力下促进物种共存的重要性,为资源有限的生态系统中的多物种保护规划提供了有价值的见解。
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引用次数: 0
Leveraging Multi-Level Biomarkers Using Machine Learning: Identifying Physiological and Skin Microbial Dynamics in Bd-Resistant Amphibians. 利用机器学习的多层次生物标志物:识别抗bd两栖动物的生理和皮肤微生物动力学。
IF 3.5 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-21 DOI: 10.1111/1749-4877.13015
Jun-Kyu Park, Ji-Eun Lee, Yuno Do

Amphibians worldwide are declining due to various anthropogenic and environmental stressors. One of the most important threats is large-scale epidemics of chytridiomycosis, which is caused by Batrachochytrium dendrobatidis (Bd). Unlike in other continents, amphibian species in South Korea, such as Pelophylax nigromaculatus, are resistant to Bd, making it difficult to discern its detailed effects. This study determined the dynamics of Bd infection in P. nigromaculatus by integrating physiological, microbiological, and morphological data and applying state-of-the-art machine learning methodologies. Data are presented on Bd prevalence, body size, weight, and physiological stress responses, including corticosterone (CORT) levels and innate immune functions determined using bacterial killing assays and skin microbiome composition. Significant physiological differences between infected and non-infected animals were observed regarding elevated CORT levels and changes in bacterial killing capacity. Skin microbiome analysis indicated a subtle variation in the microbial composition, but the alpha and beta diversities did not significantly differ between infected and non-infected animals. To balance the intrinsic class imbalance of the dataset, several machine learning methods were coupled with different data-augmentation techniques. Using the Light Gradient Boosting Machine resulted in the best predictive performance when considering conditional generative adversarial networks-augmented datasets. Among the predictors, CORT level and bacterial killing ability were chosen for classifying the infection status. Machine learning can be used to complement the contrasting sensitivities of multi-level biomarkers due to differences in disease resistance or infection loads. This integrated approach may be essential for understanding the impacts of multiple threats to amphibians.

由于各种人为和环境压力,世界范围内的两栖动物数量正在下降。其中一个最重要的威胁是壶菌病的大规模流行,这是由壶菌引起的。与其他大陆不同的是,韩国的两栖动物物种,如黑斑马鱼(Pelophylax nigromaculatus),对Bd具有抗性,因此很难辨别其详细影响。本研究通过整合生理、微生物学和形态学数据,并应用最先进的机器学习方法,确定了黑斑马鱼(P. nigromaculatus)的Bd感染动态。数据包括Bd患病率、体型、体重和生理应激反应,包括皮质酮(CORT)水平和先天免疫功能,使用细菌杀灭试验和皮肤微生物组组成测定。在感染动物和未感染动物之间观察到显著的生理差异,包括升高的CORT水平和细菌杀灭能力的变化。皮肤微生物组分析表明,微生物组成存在细微差异,但α和β多样性在感染动物和未感染动物之间没有显著差异。为了平衡数据集内在的类不平衡,将几种机器学习方法与不同的数据增强技术相结合。当考虑条件生成对抗网络增强数据集时,使用光梯度增强机可以获得最佳的预测性能。在预测因子中,选择CORT水平和细菌杀伤能力作为感染状态的分类指标。机器学习可以用来补充由于疾病抗性或感染负荷差异而产生的多层次生物标志物的对比敏感性。这种综合方法可能对了解多种威胁对两栖动物的影响至关重要。
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引用次数: 0
An Overlooked Habitat-Dependent Link Between Metabolism and Water Loss in Reptiles. 爬行动物新陈代谢和水分流失之间被忽视的依赖栖息地的联系。
IF 3.5 1区 生物学 Q1 ZOOLOGY Pub Date : 2025-07-21 DOI: 10.1111/1749-4877.13016
Shahar Dubiner, Shai Meiri, Eran Levin

Maintaining the body's water balance is crucial for function and survival in all animals. Humidity conditions vary between different habitats and greatly affect an animal's evaporative water loss (EWL). Species inhabiting arid regions have adaptions to minimize water loss, which those adapted to life in humid regions may lack. Therefore, the physiology of species from different habitats could respond differentially to acute exposure to dry conditions. We measured the EWL and resting metabolic rates (RMRs) of 12 Israeli squamate species, from either mesic or xeric habitats, spanning four orders of magnitude in size. We treated the animals to dry and humid air simulating natural conditions (vapor pressure deficits 3 and 1 kPa, respectively) at an ecologically relevant temperature of 25°C. EWL rates were higher in dry air, and the effect was stronger in mesic species. EWL of mesic species in humid air is similar to EWL of xeric species in dry air, indicating similar EWL when tested under settings that match each species' natural conditions. In dry air, the RMR of small-bodied (<5 g) mesic species increased, whereas those of some small-bodied xeric species decreased. Small mesic species might be displaying stress from unnaturally dry conditions, whereas small xeric species possibly display an adaptation to minimize EWL by lowering RMR, thereby respiration rates. Physiological measurements are usually taken in dry air, and our results suggest previous experiments may contain a methodological bias. Future ecophysiological research needs to consider ambient humidity, by either varying experimental humidity to match natural conditions, or considering possible effects of humidity during analysis and interpretation of experiments and models.

维持体内水分平衡对所有动物的机能和生存都至关重要。不同栖息地的湿度条件不同,对动物的蒸发失水(EWL)有很大影响。生活在干旱地区的物种具有减少水分流失的适应性,而那些适应潮湿地区生活的物种可能缺乏这种适应性。因此,不同生境的物种对急性暴露于干燥条件下的生理反应是不同的。我们测量了12种以色列鳞类动物的EWL和静息代谢率(RMRs),这些物种分别来自中旱生境,大小跨越4个数量级。我们将动物置于模拟自然条件的干燥和潮湿空气中(蒸汽压差分别为3和1 kPa),生态相关温度为25°C。在干燥空气中,EWL率较高,且对mesic物种的影响更大。湿润空气中mesic物种的EWL与干燥空气中干燥物种的EWL相似,表明在与每个物种的自然条件相匹配的设置下测试时EWL相似。在干燥空气中,小体(
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引用次数: 0
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Integrative zoology
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