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Dynamic transcriptome landscape of foxtail millet grain development 谷子籽粒发育的动态转录组景观
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0019
Dan Wang, Min Su, Jianhong Hao, Zidong Li, Shuqi Dong, Xiangyang Yuan, Xiaorui Li, Lulu Gao, Xiaoqian Chu, Guanghui Yang, Huiling Du, Jiagang Wang
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引用次数: 0
Molecular mechanisms underlying plant environment-sensitive genic male sterility and fertility restoration 植物环境敏感基因雄性不育与育性恢复的分子机制
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0013
Gang Xu, Xiansheng Zhang
Male reproduction, an essential and vulnerable process in the plant life cycle, is easily disrupted by changes in surrounding environmental factors such as temperature, photoperiod, or humidity. Plants have evolved multiple mechanisms to buffer adverse environmental effects; understanding these mechanisms is crucial to increase crop resilience to a changing climate, and to provide new breeding tools for hybrid seed production. Here, we review the latest research progresses in molecular mechanisms underlying plant environment-sensitive genic male sterility and fertility restoration, covering both genetic and epigenetic aspects, and summarize the common molecular mechanisms underlying fertility conversion using knowledges obtained from photoperiod/thermo-sensitive genic male sterility (P/TGMS) mutants. This review, therefore, aims to better understand male fertility adaptation in response to environmental factors, with a focus on future applications for two-line hybrid breeding.
雄性生殖是植物生命周期中一个重要而脆弱的过程,容易受到周围环境因素(如温度、光周期或湿度)的影响。植物已经进化出多种机制来缓冲不利的环境影响;了解这些机制对于提高作物对气候变化的适应能力和为杂交种子生产提供新的育种工具至关重要。本文综述了植物环境敏感型雄性不育与育性恢复分子机制的最新研究进展,包括遗传学和表观遗传学两个方面,并利用光周期/温敏型雄性不育(P/TGMS)突变体的研究成果,总结了植物环境敏感型雄性不育转化的常见分子机制。因此,本文旨在更好地了解雄性对环境因素的适应性,并着眼于未来在两系杂交种育种中的应用。
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引用次数: 0
Expanding crop adaptability to increase planting area: A promising strategy for enhancing agricultural production 扩大作物适应性以增加种植面积:提高农业生产的一个有前途的策略
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0020
Xiaoying Wang, Haicheng Huang, Ming Lu, Yuchao Cui, Rongyu Huang, Xiangfeng Wang, Ran Fu, Wei Liang, Xinhao Ouyang
The yield gap accurately measures the efficiency of converting the maximum genetic yield into the average yield per unit area, nationally or globally. However, despite continuous advancements in breeding and cultivation technology, yield gap continue to widen in many regions worldwide. Our findings suggest that widespread planting of high-yielding varieties can enhance crop yield per unit area and narrow the yield gap, thereby offering an effective strategy to convert the potential high yield per plant into an overall increase in production.
产量差距准确地衡量了将最高遗传产量转化为国家或全球单位面积平均产量的效率。然而,尽管育种和栽培技术不断进步,但全球许多地区的产量差距继续扩大。研究结果表明,广泛种植高产品种可以提高作物单产,缩小产量差距,从而为将单产潜力转化为整体增产提供了有效策略。
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引用次数: 0
Inhibition of ROP1 activity is essential for pollen dormancy under moist conditions in Arabidopsis 在潮湿条件下,抑制ROP1活性对拟南芥花粉休眠至关重要
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0018
Jing Yan, Xiang Zhou, Zengyu Liu, Jinbo Hu, Hui Li, Jiming Gong
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引用次数: 0
The regulation of grain weight in wheat 小麦粒重的调节
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0017
Yujiao Gao, Yongsheng Li, Weiyi Xia, Mengqing Dai, Yi Dai, Yonggang Wang, Haigang Ma, Hongxiang Ma
Wheat (Triticum aestivum L., AABBDD) is one of the world's most extensively cultivated crops, furnishing vital nutrients and energy for human consumption. Wheat seeds are the primary sustenance source. Given the mounting global population and dwindling arable land, enhancing wheat grain yield remains a concern for mankind. A pivotal agronomic trait influencing grain yield is grain weight, which is predominantly contingent on seed size and endosperm components and is regulated by complex and precise molecular networks. Endogenous factors, such as transcriptional and post-translational regulators, exert pivotal influence over seed development. Notably, starch is the main storage component of wheat endosperm, and the starch synthesis-related genes exert an important effect on grain weight. Prior reviews on wheat grain traits have mostly focused on the regulation of grain size, and the contents of such reviews are almost entirely written based on the regulatory network of rice seed size. Although many regulatory mechanisms for various traits are similar in rice and wheat, there are lots of differences in wheat due to its vast and intricate genome. An all-encompassing panorama of the grain weight regulatory network has not yet been comprehensive. This review summarizes the catalog of reported genes, discusses the emerging molecular mechanisms, and delves into regulatory networks to foster a more holistic understanding of the intricate regulation of wheat seed weight.
小麦(Triticum aestivum L., AABBDD)是世界上种植最广泛的作物之一,为人类消费提供重要的营养和能量。小麦种子是主要的食物来源。在全球人口不断增加、耕地面积不断减少的情况下,提高小麦产量仍然是人类关注的问题。影响粮食产量的关键农艺性状是籽粒重,籽粒重主要取决于种子大小和胚乳成分,并受复杂而精确的分子网络调节。内源因子,如转录和翻译后调控因子,对种子发育具有关键影响。值得注意的是,淀粉是小麦胚乳的主要贮藏成分,淀粉合成相关基因对籽粒重有重要影响。以往对小麦籽粒性状的研究多集中在对籽粒大小的调控上,其内容几乎完全基于水稻籽粒大小的调控网络。虽然水稻和小麦的许多性状的调控机制相似,但小麦由于其庞大而复杂的基因组而存在许多差异。粮食重量调节网络的全面全景还没有全面。本文综述了已报道的基因目录,讨论了新兴的分子机制,并深入研究了调控网络,以促进对小麦种子重的复杂调控有更全面的了解。
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引用次数: 0
Control of Grain Size and Number by MAPK Signaling in Rice 水稻MAPK信号对籽粒大小和数量的控制
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0015
Na Li, Liangliang Chen, Yunhai Li
Grain size, a main component of grain yield, is regulated by a complex network. The mitogen-activated protein kinase (MAPK) cascade participates in multiple signaling pathways to regulate various biological processes. Recent studies indicate that MAPK signaling plays key roles in regulating grain size. For instance, OsERECTA1(OsER1)–OsMKKK10–OsMKK4–OsMPK6 signaling regulates grain size and grain number per panicle. Grain size is also affected by the OsMKKK70–OsMKK4–OsMPK6 module, which functions upstream of OsWRKY53. In addition, MITOGEN-ACTIVATED PROTEIN KINASE PHOSPHATASE1 (OsMKP1), the GSK3/SHAGGY-like kinase GSK2, and the Rho-family GTPase OsRac1 controls grain size in rice by modulating MAPK signaling. Here, we discuss recent findings on the importance of MAPK signaling in rice grain-size control and examine mechanisms by which MAPK signaling coordinates grain size, grain number and stress responses.
晶粒度是影响粮食产量的重要因素,其调控机制复杂。丝裂原活化蛋白激酶(MAPK)级联参与多种信号通路,调节多种生物过程。近年来的研究表明,MAPK信号在调控籽粒大小中起着关键作用。例如,OsERECTA1(OsER1) -OsMKKK10-OsMKK4-OsMPK6信号调节籽粒大小和每穗粒数。晶粒尺寸也受OsWRKY53上游的OsMKKK70-OsMKK4-OsMPK6模块的影响。此外,丝裂原活化蛋白激酶磷酸酶1 (OsMKP1)、GSK3/ shaggy样激酶GSK2和rho家族GTPase OsRac1通过调节MAPK信号控制水稻晶粒大小。在这里,我们讨论了MAPK信号在水稻晶粒大小控制中的重要性,并研究了MAPK信号协调晶粒大小、粒数和胁迫响应的机制。
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引用次数: 0
Unveiling the genomic blueprint of salt stress: insights from <i>Ipomoea pes-caprae</i> L. 揭示盐胁迫的基因组蓝图:来自Ipomoea pes-caprae&lt;/i&gt;l
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0021
Yan Cheng, Yu Wang, Jin Sun, Zhenyang Liao, Kangzhuo Ye, Bin Hu, Chunxing Dong, Zixian Li, Fang Deng, Lulu Wang, Shijiang Cao, Chenglang Pan, Ping Zheng, Lijun Cai, Ling Cao, Sheng Wang, Mohammad Aslam, Hong Wang, Yuan Qin
Adverse environmental conditions often present challenges for organisms; however, they can also serve as selective pressures that propel adaptive evolution. In this study, we present the first chromosome-scale genome of Ipomoea pes-caprae L (IPC), an exceptionally salt-tolerant plant species of considerable significance due to its medicinal, ecological, and biological attributes. The haplotype IPC genome comprises 15 chromosomes spanning 1.05 GB and includes 34,077 protein-coding genes, exhibiting an impressive completeness of 97.4%. Comparative genomic analysis with non-salt-tolerant Ipomoea species has highlighted the prevalence of highly duplicated sequences and genes within the IPC genome. Analysis of gene ortholog expansion, when compared those Ipomoea species, reveals that expanded TRD (transposed duplication) and DSD (dispersed duplication) genes are predominantly associated with functions related to salt tolerance. Furthermore, our findings suggest strong correlations between DSD and TRD gene duplication and transposable element (TE) events, implying that TE-induced expansion of repeat genes is a driving force behind gene diversification. Moreover, a time-course RNA-seq analysis unveils the salt response of IPC roots and leaves, showing the involvement of several key salt-tolerance genes exhibiting copy number expansion. These include genes responsible for ion uptake, transportation, and sequestration into vacuoles, as well as genes responsible for the maintenance of DNA and chromosome stability. Given the significant induction of TE events by salt stress in plant genomes, we propose a putative mechanism for the rapid evolution of salt tolerance in IPC. Additionally, this study delves into the metabolic pathway and regulatory mechanisms of Caffeoylquinic acids (CQA), a medicinal component found in IPC.
不利的环境条件常常给生物体带来挑战;然而,它们也可以作为推动适应性进化的选择压力。在这项研究中,我们展示了Ipomoea pes-caprae L (IPC)的第一个染色体尺度基因组,Ipomoea pes-caprae L是一种特别耐盐的植物物种,由于其药用、生态和生物学特性而具有相当重要的意义。单倍型IPC基因组包括15条染色体,跨越1.05 GB,包含34,077个蛋白质编码基因,完整性达到了令人印象深刻的97.4%。与非耐盐Ipomoea物种的比较基因组分析突出了IPC基因组中高度重复的序列和基因的普遍性。基因同源扩增分析表明,扩增的TRD(转置重复)和DSD(分散重复)基因主要与耐盐功能相关。此外,我们的研究结果表明,DSD和TRD基因复制与转座因子(TE)事件之间存在很强的相关性,这意味着TE诱导的重复基因扩增是基因多样化背后的驱动力。此外,时间过程RNA-seq分析揭示了IPC根和叶的盐响应,表明几个关键的耐盐基因参与其中,表现出拷贝数的增加。这些基因包括负责离子摄取、运输和隔离到液泡中的基因,以及负责维持DNA和染色体稳定性的基因。鉴于盐胁迫在植物基因组中显著诱导TE事件,我们提出了IPC耐盐性快速进化的推测机制。此外,本研究还深入探讨了IPC中发现的药用成分咖啡酰奎宁酸(CQA)的代谢途径和调控机制。
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引用次数: 0
Comparative Ubiquitome Analysis Reveals Diverse Functions of Ubiquitination in Rice Seed Development under High-Temperature Stress 比较泛素分析揭示高温胁迫下水稻种子发育中泛素化的多种功能
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0023
Yining Ying, Yuehan Pang, Jinsong Bao
Protein ubiquitination plays vital roles in regulation of diverse cellular processes during plant growth and development. However, how protein ubiquitination regulates seed development in high-temperature environments is less understood. Here, a label-free quantification identified 488 lysine modification sites in 246 ubiquitinated proteins in the endosperm of two rice varieties, 9311 and Guangluai4 (GLA4). Under high-temperature stress, the number of significantly up-regulated sites was far greater than down-regulated sites, and 37 ubiquitinated proteins were commonly regulated with the same trend in the two varieties. The sucrose and starch metabolism were greatly over-represented by functional and pathway enrichment analyses. The key functions of ubiquitinated proteins related to starch metabolism are SUS1, SUS2, SUS3, FK and UGPase for sucrose hydrolysis, and AGPL2, AGPL3, AGPS1, AGPS2, GBSSI, BEI, BEIIb, PUL and Pho1 for starch synthesis. Most lysine modification sites were first identified in rice and tended to be up-regulated under heat stress, providing evidence for decreased protein abundance of starch synthesis related enzyme at the ubiquitination level. Predicted 3D models of GBSSI revealed an important role of ubiquitylation sites K462 involved in the interaction between the GBSSI and ligands (SO4 and ADP). Our study provides the first comprehensive view of the ubiquitome in rice seeds, which will provide important insight into the mechanism underlying seed development and grain quality improvement under high-temperature stress.
蛋白质泛素化在植物生长发育过程中调控多种细胞过程中起着重要作用。然而,在高温环境下,蛋白质泛素化如何调控种子发育尚不清楚。本研究通过无标记定量分析,鉴定了9311和广绿4 (GLA4)两个水稻品种胚乳中246个泛素化蛋白的488个赖氨酸修饰位点。在高温胁迫下,显著上调的位点数量远大于下调的位点,有37种泛素化蛋白在两个品种中普遍上调,且趋势相同。蔗糖和淀粉代谢被功能和途径富集分析过度地代表了。与淀粉代谢相关的泛素化蛋白的关键功能是SUS1、SUS2、SUS3、FK和UGPase用于蔗糖水解,以及AGPL2、AGPL3、AGPS1、AGPS2、GBSSI、BEI、BEIIb、PUL和Pho1用于淀粉合成。大多数赖氨酸修饰位点首先在水稻中被发现,并且在热胁迫下倾向于上调,这为淀粉合成相关酶在泛素化水平上的蛋白质丰度降低提供了证据。预测的GBSSI 3D模型揭示了泛素化位点K462在GBSSI与配体(SO4和ADP)相互作用中的重要作用。本研究首次对水稻种子中的泛素组进行了全面的研究,为进一步了解高温胁迫下种子发育和籽粒品质改善的机制提供了重要依据。
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引用次数: 0
Research progress on the relationship between rice protein content and cooking and eating quality and its influencing factors 大米蛋白质含量与煮食品质关系及其影响因素的研究进展
Pub Date : 2023-01-01 DOI: 10.48130/seedbio-2023-0016
Guangming Lou, Mufid Alam Bhat, Xuan Tan, Yingying Wang, Yuqing He
Proteins, the second-largest storage substance in rice endosperm, play an important role in determining the cooking and eating qualities of rice. Its contents are influenced by both genetic and environmental factors. This article provides a review of the evaluation methods for cooking and eating qualities of rice and starch physicochemical properties, the factors that affect the protein content of rice, the genetic basis of rice protein content, the research progress made in the genetic improvement of rice protein content, and the prospects for the future, aiming to provide a reference for the genetic improvement of rice protein content and the breeding of rice varieties with excellent taste.
蛋白质是水稻胚乳中第二大贮藏物质,对大米的烹饪和食用品质起着重要的决定作用。其含量受遗传因素和环境因素的影响。本文综述了大米蒸煮和食用品质的评价方法、淀粉理化性质、大米蛋白质含量的影响因素、大米蛋白质含量的遗传基础、大米蛋白质含量遗传改良的研究进展,并对未来进行了展望,旨在为大米蛋白质含量的遗传改良和选育口感优良的水稻品种提供参考。
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引用次数: 0
The impact of the Russia-Ukraine conflict on global grain market and food security: Short- and long-term effects 俄乌冲突对全球粮食市场和粮食安全的影响:短期和长期影响
Pub Date : 1900-01-01 DOI: 10.48130/seedbio-2022-0003
Mengxiang Sun
Since the 24th February 2022, Russia has been conducting extensive air and missile strikes against the Ukraine military they have also been conducting concurrent ground offensives beyond Crimea and the Donbas breakaway entities. Recent reports highlighted that Russia has continually advanced in different maneuver axes and at present, no one can predict when and how the Ukraine conflict will end. For over three months, the conflict has greatly influenced the global economy and sounded the alarm bells for global food safety, especially to those countries which greatly depend on food and chemical fertilizer import from Russia and Ukraine, as well as those countries sensitive to food price variation shock. According to the '2021 GLOBAL REPORT ON FOOD CRISES (GRFC 2022)' by the World Food Program (WFP) and Food and Agriculture Organization of the United Nations (FAO), due to regional conflicts, economic downturn and Covid-19 about 1.93 billion people in 53 countries and regions are facing a food crisis, which is the highest number since 2016, and since 2000 the number has increased by 0.4 billion. Since both Russia and the Ukraine are important countries for grain export, the RussiaUkraine conflict, the reduced agricultural output (particularly grains and oilseeds), and economic sanctions against Russia, have further enhanced the global food crisis. Notably, we are facing great challenges in global food safety. Here, we try to emphasize the influences of the Russia-Ukraine conflict on global food safety in terms of its shortand long-term effects based on our current understooding to date.
自2022年2月24日以来,俄罗斯一直在对乌克兰军队进行广泛的空中和导弹袭击,他们也同时在克里米亚和顿巴斯分离实体之外进行地面进攻。最近的报道强调,俄罗斯在不同的机动轴上不断前进,目前,没有人能预测乌克兰冲突何时以及如何结束。三个多月来,这场冲突对全球经济产生了巨大影响,对全球食品安全敲响了警钟,特别是对那些严重依赖从俄罗斯和乌克兰进口食品和化肥的国家,以及对食品价格波动冲击敏感的国家。根据世界粮食计划署(WFP)和联合国粮食及农业组织(FAO)发布的《2021年全球粮食危机报告》(GRFC 2022),由于地区冲突、经济衰退和2019冠状病毒病,53个国家和地区约有19.3亿人面临粮食危机,这是自2016年以来的最高水平,自2000年以来增加了4亿人。由于俄罗斯和乌克兰都是重要的粮食出口国家,俄乌冲突、农业产量(特别是谷物和油籽)的减少以及对俄罗斯的经济制裁,进一步加剧了全球粮食危机。值得注意的是,全球食品安全面临巨大挑战。在这里,我们试图强调俄罗斯-乌克兰冲突对全球食品安全的影响,根据我们目前的理解,其短期和长期的影响。
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引用次数: 1
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Seed Biology
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