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Nanoengineered Polyphenol-Quantum Dot Conjugates Inhibit Biofilm Protein-Aβ42 Heterotypic Fibrillogenesis, Restore Synaptic Transmission, and Suppress Apoptosis in Alzheimer’s Disease 纳米工程多酚-量子点偶联物抑制阿尔茨海默病生物膜蛋白a β42异型纤维形成,恢复突触传递,抑制细胞凋亡。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1021/acschemneuro.5c00467
Trilok Chand Saini, , , Shiwani Randhawa, , , Manik Bathla, , , Anjali Nisha, , , Nandini Teji, , and , Amitabha Acharya*, 

The gut microbiota influences neurodegenerative disease progression, including Alzheimer’s disease (AD), through microbial metabolites like amyloids in bacterial biofilms, such as the curli protein in Eshcherichia coli biofilm. In this context, the study focuses on two key aspects, namely, (i) how cross-kingdom bacterial biofilm proteins accelerate Aβ42 aggregation and induce neurotoxicity and (ii) whether a nanochaperone with hydrophobic sheets and hydrophilic polyphenolic moieties could inhibit cross-seeded aggregation. Considering this, we chemically synthesized and further characterized gallic acid-conjugated molybdenum disulfide quantum dots (GA@MoS2 QDs, ∼9.6 ± 4.2 nm) using spectroscopy and microscopy techniques, which showed ∼1.84-fold reduction in E. coli biofilm thickness, indicating interaction with biofilm components. The presence of the curli protein in E. coli was confirmed by dot blot and MALDI-TOF studies. Subsequent biophysical studies showed that isolated E. coli biofilm protein accelerated Aβ42 aggregation (heterotypic) by ∼6.76-fold, while GA@MoS2 QDs reduced this heterotypic aggregation by ∼9.49-fold reduction in Aβ42+ECBFP fluorescence relative to Aβ42 aggregates. In vitro studies with SH-SY5Y cells showed that heterotypic protein aggregation led to increased ROS production, intracellular calcium influx, and apoptosis induction, which were mitigated by GA@MoS2 QDs. The neuroprotective effect of GA@MoS2 QDs was also studied on Caenorhabditis elegans. Overall, the present studies suggested that the bacterial amyloid proteins may play a crucial role in Aβ42 aggregation, suggesting that targeting coaggregation could provide a novel therapeutic approach for the treatment of early onset AD.

肠道微生物群通过细菌生物膜中的淀粉样蛋白等微生物代谢物(如大肠杆菌生物膜中的卷曲蛋白)影响神经退行性疾病的进展,包括阿尔茨海默病(AD)。在此背景下,研究集中在两个关键方面,即(i)跨界细菌生物膜蛋白如何加速a β42聚集并诱导神经毒性;(ii)具有疏水片和亲水多酚基团的纳米伴侣是否可以抑制交叉种子聚集。考虑到这一点,我们利用光谱学和显微镜技术化学合成并进一步表征了没食子酸共轭二硫化钼量子点(GA@MoS2 QDs, ~ 9.6±4.2 nm),结果显示大肠杆菌生物膜厚度减少了~ 1.84倍,表明与生物膜组分相互作用。通过点印迹和MALDI-TOF研究证实了大肠杆菌中curli蛋白的存在。随后的生物物理研究表明,分离的大肠杆菌生物膜蛋白加速了Aβ42的聚集(异型)约6.76倍,而GA@MoS2量子点使Aβ42+ECBFP荧光相对于Aβ42聚集体减少了约9.49倍,从而降低了这种异型聚集。SH-SY5Y细胞的体外研究表明,异型蛋白聚集导致ROS生成增加、细胞内钙内流和细胞凋亡诱导,GA@MoS2量子点可以缓解这些现象。研究了GA@MoS2 QDs对秀丽隐杆线虫的神经保护作用。总的来说,目前的研究表明细菌淀粉样蛋白可能在a β42聚集中起关键作用,这表明靶向共聚集可能为早发性AD的治疗提供新的治疗途径。
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引用次数: 0
Thin-Film Reference Electrodes for Fast-Scan Cyclic Voltammetry 快速扫描循环伏安法的薄膜参考电极。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-19 DOI: 10.1021/acschemneuro.5c00397
Yongli Qi, , , Jaehyeon Ryu, , , Dongyeol Jang, , , Bella Schaub, , , Yieljae Shin, , , Tianyu Bai, , , Gen Li, , , Joshua P. Aronson, , , James C. Leiter, , and , Hui Fang*, 

Electrochemical sensors rely on reference electrodes (REs) to provide stable potential standards, ensuring accurate and reliable detection. The development of biocompatible, stable, and miniaturized REs to replace conventional Ag/AgCl electrodes is crucial for translating electrochemical sensing for human applications. This study evaluates the performance of thin-film electrodes made from gold (Au), platinum (Pt), poly(3,4-ethylenedioxythiophene)-polystyrenesulfonate (PEDOT:PSS), and platinum–iridium (Pt–Ir) as REs for fast-scan cyclic voltammetry (FSCV), a widely used technique for real-time neurotransmitter detection. Using dopamine (DA) sensing as a model platform, our results demonstrate that Pt–Ir electrodes provide the necessary stable potential, low drift, and high reproducibility for FSCV sensing, even at a reduced size of 0.1 mm × 0.1 mm. Additionally, Pt–Ir exhibited performance comparable to Ag/AgCl electrodes across various pH levels and in the presence of biofouling agents. These findings highlight Pt–Ir as a promising alternative RE, with strong potential for integration into miniaturized electrochemical sensors for both preclinical and clinical applications.

电化学传感器依靠参考电极(REs)提供稳定的电位标准,确保检测的准确性和可靠性。开发生物相容性、稳定性和小型化的REs来取代传统的Ag/AgCl电极是将电化学传感转化为人类应用的关键。本研究评估了由金(Au),铂(Pt),聚(3,4-乙烯二氧噻吩)-聚苯乙烯磺酸盐(PEDOT:PSS)和铂-铱(Pt- ir)作为REs制成的薄膜电极在快速扫描循环伏安法(FSCV)中的性能,FSCV是一种广泛用于实时神经递质检测的技术。使用多巴胺(DA)传感作为模型平台,我们的研究结果表明,Pt-Ir电极为FSCV传感提供了必要的稳定电位、低漂移和高再现性,即使在0.1 mm × 0.1 mm的尺寸下也是如此。此外,Pt-Ir在不同的pH水平和存在生物污垢剂的情况下表现出与Ag/AgCl电极相当的性能。这些发现强调了Pt-Ir作为一种有前途的替代稀土,具有集成到小型化电化学传感器中用于临床前和临床应用的强大潜力。
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引用次数: 0
Native PEG–PLGA Attenuates β-Amyloid Aggregation and Toxicity under In Vitro Conditions 天然PEG-PLGA在体外条件下减弱β-淀粉样蛋白聚集和毒性。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-17 DOI: 10.1021/acschemneuro.5c00379
Mallesh Rathnam, , , Haley Hunter, , , Pallabi Sil Paul, , , Ralf Schirrmacher, , , Michael J. Serpe, , and , Satyabrata Kar*, 

Self-aggregation of amyloid-β (Aβ) peptide plays a key role in the pathogenesis of Alzheimer’s disease (AD), the most prevalent cause of dementia affecting the elderly population. The development of an effective treatment for AD pathology remains elusive due to the presence of the blood-brain barrier (BBB) and the heterogeneous nature of disease progression. Recently, we reported that FDA-approved native poly(d,l-lactic-co-glycolic acid) (PLGA) nanoparticles without any conjugated/encapsulated agent can attenuate Aβ aggregation/toxicity in cellular and animal models of AD. Given the limitation associated with the fast clearance of the native PLGA by the reticuloendothelial system (RES), in the present study, we synthesized PEGylated native PLGA nanoparticles (PEG–PLGA-1) to reduce their clearance via the RES and evaluated their effects on Aβ aggregation/toxicity after biochemical and structural characterization. Determined with Thioflavin T kinetic assay, dynamic light scattering and fluorescence imaging, it was revealed that the native PEG–PLGA-1, which exhibits increased stability, not only inhibits the aggregation of Aβ peptides, but also triggers the disassembly of Aβ aggregates. Additionally, we showed that PEG–PLGA-1 are nontoxic and can significantly enhance the viability of mouse primary cortical cultured neurons against Aβ-mediated toxicity. Collectively, these results suggest that native PEG–PLGA-1 nanoparticles can inhibit Aβ aggregation and trigger disassembly of Aβ aggregates and can protect neurons against Aβ-mediated toxicity, thus suggesting their unique therapeutic potential in the treatment of AD pathology.

淀粉样蛋白-β (a β)肽的自聚集在阿尔茨海默病(AD)的发病机制中起关键作用,阿尔茨海默病是影响老年人的最常见的痴呆症原因。由于血脑屏障(BBB)的存在和疾病进展的异质性,开发一种有效治疗AD病理的方法仍然难以捉摸。最近,我们报道了fda批准的天然聚(d,l-乳酸-羟基乙酸)(PLGA)纳米颗粒不含任何缀合/封装剂,可以减轻AD细胞和动物模型中的Aβ聚集/毒性。考虑到网状内皮系统(RES)对天然PLGA的快速清除的局限性,在本研究中,我们合成了聚乙二醇化的天然PLGA纳米颗粒(PEG-PLGA-1),以减少其通过RES的清除,并通过生化和结构表征评估了其对Aβ聚集/毒性的影响。通过硫黄素T动力学分析、动态光散射和荧光成像分析,发现天然PEG-PLGA-1不仅抑制了Aβ肽的聚集,而且还引发了Aβ聚集体的分解。此外,我们发现PEG-PLGA-1无毒,可以显著提高小鼠皮层培养的原代神经元抗a β介导的毒性的活力。综上所述,这些结果表明,天然PEG-PLGA-1纳米颗粒可以抑制Aβ聚集并触发Aβ聚集物的分解,并可以保护神经元免受Aβ介导的毒性,从而表明它们在治疗AD病理方面具有独特的治疗潜力。
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引用次数: 0
Characterization of Dendritic Polyglycerol Amine Layers as Coatings for Improved Neural Cell Growth Surfaces 树突状聚甘油胺层作为神经细胞生长表面涂层的表征。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-15 DOI: 10.1021/acschemneuro.5c00673
Amanpreet Parihar, , , Amy Praetzel, , , Violeta Toader, , , Nathalie Marcal, , , Melissa Pestemalciyan, , , Ehsan Mohammadifar, , , Rainer Haag, , , Christopher J. Barrett, , , Timothy E. Kennedy*, , and , Linda Reven*, 

Surfaces coated with the hyperbranched dendritic polyglycerol amine, dPGA, a nonprotein macromolecular biomimetic of polylysine, have been shown to provide enhanced support for stable long-term culture of embryonic rat neocortical neurons and human neurons derived from induced pluripotent stem cells (iPSCs). Here, we investigate the physical properties of surface-adsorbed dPGA to understand how it provides better support for cell attachment, survival, and growth. High-molecular-weight dPGA (MW 550 kDa) with ∼30% amine functionalization was deposited on silicon wafers from PBS (pH 7.4) solutions to measure the layer thickness and density by ellipsometry and surface roughness and texture by atomic force microscopy (AFM). Colloidal silica (dia ∼ 100 nm) was used as a substrate to measure surface charge (zeta potential), adsorbed amounts by thermal gravimetric analysis (TGA), and molecular mobility by solid-state NMR spectroscopy. We found that the dPGA film properties were dependent on the immersion time in the dPGA coating solution as well as the storage conditions of dPGA solutions. Upon immobilization, dPGA retains a globular but flattened shape. Chain mobility is reduced but the adsorbed dPGA still can be considered a highly flexible polymer that rearranges to present a higher density of positive surface charges as compared to dPGA in solution. Coated surfaces prepared with different deposition times were tested for the capacity to support cells in culture.

表面涂有多分枝树突状聚甘油胺(dPGA),一种非蛋白质大分子聚赖氨酸仿生物,已被证明可以为来自诱导多能干细胞(iPSCs)的胚胎大鼠新皮质神经元和人类神经元的长期稳定培养提供增强的支持。在这里,我们研究了表面吸附的dPGA的物理性质,以了解它如何为细胞附着、存活和生长提供更好的支持。将具有~ 30%胺功能化的高分子量dPGA (MW 550 kDa)沉积在PBS (pH 7.4)溶液中的硅片上,通过椭偏仪测量层厚度和密度,原子力显微镜(AFM)测量表面粗糙度和纹理。胶体二氧化硅(直径~ 100 nm)被用作底物来测量表面电荷(zeta电位),通过热重分析(TGA)吸附量,以及通过固态核磁共振光谱测量分子迁移率。我们发现,dPGA薄膜的性能与dPGA涂层溶液的浸泡时间以及dPGA溶液的储存条件有关。固定后,dPGA保持球形但扁平的形状。链迁移率降低,但吸附的dPGA仍然可以被认为是一种高度柔性的聚合物,与溶液中的dPGA相比,它可以重新排列,呈现更高密度的表面正电荷。对不同沉积时间制备的包被表面在培养中支持细胞的能力进行了测试。
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引用次数: 0
Neuroprotective Activity of 3-((6-(Phenylethynyl)pyridin-3-yl)oxy)quinuclidine: A Potential Ligand for the Treatment of Alzheimer’s Disease 3-((6-(苯乙基)吡啶-3-基)氧基)喹啉的神经保护活性:治疗阿尔茨海默病的潜在配体。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-13 DOI: 10.1021/acschemneuro.5c00527
Pablo S. Cavagnero, , , Yaíma Sánchez, , , Brian Fell, , , Oscar Ramírez Molina, , , Javiera Gavilán, , , Efraín A. Polo, , , Jorge Fuentealba, , , Margarita Gutierrez, , , Claudio A. Jiménez*, , and , Jhon J. López*, 

Alzheimer’s disease (AD) is a neurodegenerative disorder marked by the accumulation of β-amyloid (Aβ) peptides, which disrupt neuronal homeostasis through their neurotoxic effects. Aβ aggregates interfere with synaptic function by interacting with nicotinic acetylcholine receptors (nAChRs), particularly the α7 subtype, thereby impairing cholinergic signaling, which is crucial for cognition and memory. Pharmacological advancements have identified Positive Allosteric Modulators (PAMs) as promising therapeutic agents to counteract Aβ neurotoxicity. PAMs enhance nAChR activity by binding to allosteric sites, thereby reducing Aβ-induced neurotoxicity without competing with acetylcholine. This study evaluates 3-((6-(phenylethynyl)pyridine-3-yl)oxy)quinuclidine (EQ-04), a novel PAM with high selectivity for the α7 nAChR subtype, demonstrating neuroprotective potential. In vitro analyses using PC-12 cells evaluated the cytotoxic and neuroprotective properties of EQ-04. Cytotoxicity assays confirmed EQ-04’s safety, showing no adverse effects on cell viability across concentrations. EQ-04 significantly enhanced cell viability by 37% at 1 nM against Aβ toxicity and inhibited Aβ aggregation. These findings highlight the potential of EQ-04 as a neuroprotective agent for Alzheimer’s disease (AD) therapy, warranting further investigation into its pharmacokinetics and in vivo efficacy.

阿尔茨海默病(AD)是一种以β-淀粉样蛋白(a β)肽积累为特征的神经退行性疾病,β-淀粉样蛋白(a β)肽通过其神经毒性作用破坏神经元稳态。Aβ聚集体通过与烟碱乙酰胆碱受体(nachr),特别是α7亚型相互作用干扰突触功能,从而损害对认知和记忆至关重要的胆碱能信号传导。药理学的进步已经确定了正变构调节剂(Positive Allosteric Modulators, pam)作为对抗Aβ神经毒性的有前途的治疗药物。PAMs通过结合变构位点增强nAChR活性,从而减少a β诱导的神经毒性,而不与乙酰胆碱竞争。3-((6-(苯乙基)吡啶-3-基)氧基)喹啉(EQ-04)是一种对α7 nAChR亚型具有高选择性的新型PAM,具有神经保护潜力。用PC-12细胞进行体外分析,评估EQ-04的细胞毒性和神经保护特性。细胞毒性试验证实了EQ-04的安全性,显示不同浓度对细胞活力没有不良影响。EQ-04在1 nM时显著提高细胞活力37%,抗Aβ毒性,抑制Aβ聚集。这些发现突出了EQ-04作为治疗阿尔茨海默病(AD)的神经保护剂的潜力,值得进一步研究其药代动力学和体内疗效。
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引用次数: 0
G Protein: β-Arrestin Bias Confers Differential Regulation of Gαq Signaling by GPR17 Antagonists GPR17拮抗剂对G - αq信号传导的差异调控
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-12 DOI: 10.1021/acschemneuro.5c00521
Jack K. McDonald*, , , Aakanksha Abrol, , , Chris Lumb, , , Ben Capuano, , , Peter J. Scammells, , , Liam Scott, , , Natalie A. Diepenhorst, , , Christopher J. Langmead, , , Sheng Yu Ang, , and , Gregory D. Stewart*, 

Therapies enhancing remyelination offer the exciting prospect of disease-modifying treatments across a number of poorly treated neurological disorders. The class A orphan GPCR, GPR17, is one of the most studied receptors in remyelination; and antagonists of GPR17 have attracted significant attention as potential pro-myelinating medicines. Despite this, the signaling pathways linking GPR17 to remyelination and the molecular mechanisms of action of GPR17 antagonists are not well-defined. In the present study, we characterized GPR17 signaling and inhibition by three chemically distinct GPR17 antagonists: pranlukast, HAMI-3379, and a patent literature antagonist, RWT9996. In HEK293 cells recombinantly expressing GPR17- and BRET-based biosensors, pranlukast preferentially inhibited G protein activation over β-arrestin-2 recruitment, whereas HAMI3379 and RWT9996 equally inhibited all signal transduction tested. Follow-up studies using pharmacological inhibitors and GPR17 antagonists in Oli-neu cells, an immortalized mouse oligodendrocyte precursor cell (OPC) line with endogenous GPR17 expression, corroborated the G protein and β-arrestin coupling profile observed in recombinant cells. Specifically, the generated bias profile suggests that β-arrestin potentiates Gαq signaling from GPR17, conferring differential regulation of Gαq signaling by biased GPR17 antagonists. These findings highlight an unappreciated potential for biased signaling in the pharmacology of GPR17 ligands. We anticipate that these insights will help to inform the translation of GPR17-targeted therapies and improve our understanding of GPR17-mediated signaling pathways in governing myelination.

加强髓鞘再生的疗法为许多治疗不良的神经系统疾病提供了令人兴奋的治疗前景。A类孤儿GPCR GPR17是研究最多的髓鞘再生受体之一;和GPR17拮抗剂作为潜在的促髓鞘药物引起了极大的关注。尽管如此,连接GPR17与髓鞘再生的信号通路以及GPR17拮抗剂的分子作用机制尚不明确。在本研究中,我们表征了三种化学上不同的GPR17拮抗剂:pranlukast、HAMI-3379和专利文献拮抗剂RWT9996对GPR17的信号传导和抑制作用。在重组表达GPR17和基于bret的生物传感器的HEK293细胞中,pranlukast优先抑制G蛋白激活而不是β-arrestin-2募集,而HAMI3379和RWT9996同样抑制所有信号转导测试。利用药物抑制剂和GPR17拮抗剂在Oli-neu细胞(内源性GPR17表达的永生化小鼠少突胶质前细胞(OPC)细胞系)中进行的后续研究证实了重组细胞中观察到的G蛋白和β-阻滞蛋白偶联谱。具体来说,产生的偏倚谱表明β-抑制素增强GPR17的g - αq信号,赋予偏倚GPR17拮抗剂对g - αq信号的差异调节。这些发现强调了在GPR17配体的药理学中未被认识到的偏倚信号传导的潜力。我们预计这些见解将有助于为gpr17靶向治疗的翻译提供信息,并提高我们对gpr17介导的髓鞘形成信号通路的理解。
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引用次数: 0
Silymarin-Based Nanosheets Efficiently Protect Mitochondria against Oxidative Damage Mediated by α-Synuclein Amyloid Aggregates 水飞蓟素纳米片有效保护线粒体免受α-突触核蛋白淀粉样蛋白聚集体介导的氧化损伤。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-11 DOI: 10.1021/acschemneuro.5c00793
Zahra Mahmoudi Eshkaftaki, , , Saeed Emadi*, , and , Ali Akbar Meratan*, 

An increasing body of evidence suggests that mitochondrial dysfunction mediated by α-synuclein (α-syn) aggregates plays a key role in the pathogenesis of Parkinson’s disease (PD), leading to intensive research for the discovery and development of compounds with mitoprotective effects. Silymarin (SIL) is a complex mixture of flavonolignans with a wide range of protective effects on mitochondria under stress conditions. Herein, the potency of SIL, in bulk and nano forms, in protecting mitochondria against oxidative damage induced by α-syn aggregates has been investigated. Mitochondria were isolated from rat brain and liver tissues as well as human neuroblastoma SH-SY5Y cells, and damage was evaluated by using a range of biochemical assays. The obtained results show a substantial difference in the response of various mitochondria to oxidative damage induced by α-syn aggregates, with brain mitochondria exhibiting the highest vulnerability. We found that incubation of mitochondria with either bulk or nano forms of SIL before exposure to α-syn aggregates significantly attenuated oxidative damage in a dose-dependent manner. In parallel, α-syn aggregates aged in the presence of bulk or nano forms of SIL considerably lost their capacity to cause mitochondrial damage. While both bulk and nano forms of SIL showed significant mitoprotective effects, SIL nanosheets were much more effective. Possible mechanisms relating to the mitoprotective effects of SIL and the higher efficacy of SIL nanosheets are discussed. The obtained results suggest natural polyphenol-based nanoparticles as an efficient therapeutic approach in relation to amyloid-related diseases, such as PD.

越来越多的证据表明,α-突触核蛋白(α-syn)聚集体介导的线粒体功能障碍在帕金森病(PD)的发病机制中起着关键作用,因此人们对具有线粒体保护作用的化合物的发现和开发进行了深入的研究。水飞蓟素(Silymarin, SIL)是一种复杂的黄酮木脂素混合物,在应激条件下对线粒体具有广泛的保护作用。本文研究了散装和纳米形式的SIL在保护线粒体免受α-syn聚集体诱导的氧化损伤方面的效力。从大鼠脑和肝组织以及人神经母细胞瘤SH-SY5Y细胞中分离线粒体,并通过一系列生化分析评估其损伤程度。结果表明,不同线粒体对α-syn聚集体氧化损伤的反应存在较大差异,其中脑线粒体表现出最高的脆弱性。我们发现,在暴露于α-syn聚集体之前,用散装或纳米形式的SIL孵育线粒体,以剂量依赖的方式显著减轻氧化损伤。与此同时,α-syn聚集体在散装或纳米形式的SIL存在下老化,大大失去了引起线粒体损伤的能力。虽然块状和纳米形式的SIL都显示出显著的有丝分裂保护作用,但SIL纳米片更有效。讨论了SIL纳米片对有丝分裂保护作用的可能机制和SIL纳米片的更高功效。所获得的结果表明,天然多酚基纳米颗粒是淀粉样蛋白相关疾病(如帕金森病)的有效治疗方法。
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引用次数: 0
Simple Analogs of the LSD D-Ring: A Consideration of Structure–Activity Relationships and Their Potential as Therapeutics LSD d环的简单类似物:构效关系及其治疗潜力的考虑。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-05 DOI: 10.1021/acschemneuro.5c00695
Steven A. Barker*, 

Psychedelic drugs have begun to show therapeutic promise. However, there is a growing research effort focused on creating nonhallucinogenic analogs of these substances. The goal is to develop new treatments for an expanding list of psychiatric and neurodegenerative disorders, while eliminating the complications and costs of treatment engendered by the subjective psychedelic experience. Structure–activity relationships (SAR), particularly for LSD (d-lysergic acid diethylamide), have guided many of these efforts. This perspective examines the historical development and behavioral testing of several simple analogs of LSD’s D-ring, which, while nonhallucinogenic and nontoxic within the context of their testing to date, can block the behavior-disrupting effects of psychedelics administered to rodents. However, these data are quite mature. D-ring analogs of LSD may have therapeutic potential but require further testing to examine binding, plastogenic effects, and potential utility in psychiatry and neuromedicine, and are ripe for reinvestigation with current tools, approaches, and concepts. Further, the SAR data strongly suggest that the incorporation of several changes to the structural elements of the D-ring may enhance the effects of other LSD-related analogs currently undergoing clinical trials.

迷幻药已开始显示出治疗的前景。然而,有越来越多的研究致力于创造这些物质的非致幻剂类似物。目标是为不断扩大的精神和神经退行性疾病开发新的治疗方法,同时消除由主观迷幻体验引起的并发症和治疗费用。结构-活性关系(SAR),特别是LSD (d-麦角酸二乙胺),指导了许多这样的努力。这一观点考察了LSD d环的几种简单类似物的历史发展和行为测试,这些类似物虽然在迄今为止的测试中没有致幻剂和毒性,但可以阻止迷幻药对啮齿动物的行为破坏作用。然而,这些数据是相当成熟的。LSD的d环类似物可能具有治疗潜力,但需要进一步的测试,以检查结合,可塑性效应,以及在精神病学和神经医学中的潜在效用,并且已经成熟,可以使用当前的工具,方法和概念进行重新研究。此外,SAR数据强烈表明,结合d环结构元素的一些变化可能会增强目前正在进行临床试验的其他lsd相关类似物的效果。
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引用次数: 0
Machine Learning–Based Bioactivity Prediction and Descriptor-Guided Rational Design of Amyloid-β Aggregation Inhibitors 基于机器学习的淀粉样蛋白-β聚集抑制剂生物活性预测和描述符引导的合理设计。
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-05 DOI: 10.1021/acschemneuro.5c00649
Avantika Bansal, , , Akshat Raj Sharma, , , Arya Chakraborty, , , Aditya Sunkaria, , and , Alok Jain*, 

Alzheimer’s disease (AD) is a progressive neurodegenerative disorder in which amyloid-β (Aβ) aggregation plays a pivotal role in its onset and progression. Inhibiting Aβ aggregation is a promising therapeutic strategy; however, its intrinsically disordered and conformationally flexible nature hinders both conventional and computational inhibitor design. Moreover, experimental development of Aβ inhibitors, encompassing molecular design, synthesis, and biological evaluation through repeated assays, is a slow, labor-intensive, and resource-intensive process. Therefore, robust design guidelines and predictive tools are essential for accelerating the discovery of Aβ inhibitors. To overcome these limitations, we developed a machine-learning-based, user-friendly web platform, Amylo-IC50Pred (https://amyloic50pred.vercel.app/), for rapid virtual screening of small molecules targeting Aβ aggregation. The platform integrates two classification models and one regression model, trained on 584 biologically validated compounds. For inhibitor–decoy discrimination, the Random Forest algorithm achieved perfect accuracy (100%). Potency classification into potent, moderately potent, and poor inhibitors was best achieved using Histogram-based Gradient Boosting (81% accuracy). The IC50 regression model, also based on Random Forest, achieved a coefficient of determination (R2) of 0.93, demonstrating strong predictive performance. 2D and 3D key molecular properties such as hydrophobicity, shape and charge distribution, and molecular symmetry were identified as critical contributors to model performance. Importantly, these identified properties provide valuable insights into the molecular features that govern Aβ aggregation inhibition and can serve as a foundation for rational design of potent and selective Aβ aggregation inhibitors. Amylo-IC50Pred thus represents a valuable resource for accelerating AD drug discovery.

阿尔茨海默病(AD)是一种进行性神经退行性疾病,淀粉样蛋白-β (a β)聚集在其发病和发展中起关键作用。抑制a β聚集是一种很有前景的治疗策略;然而,其内在的无序性和构象柔性阻碍了传统和计算抑制剂的设计。此外,a β抑制剂的实验开发,包括分子设计、合成和通过重复测定的生物学评价,是一个缓慢、劳动密集型和资源密集型的过程。因此,稳健的设计指南和预测工具对于加速发现Aβ抑制剂至关重要。为了克服这些限制,我们开发了一个基于机器学习的、用户友好的网络平台,Amylo-IC50Pred (https://amyloic50pred.vercel)。app/),用于靶向Aβ聚集的小分子的快速虚拟筛选。该平台集成了两个分类模型和一个回归模型,对584种经过生物学验证的化合物进行了训练。对于抑制-诱饵区分,随机森林算法达到了完美的准确率(100%)。使用基于直方图的梯度增强(81%的准确率),可以最好地将效力分类为强效、中等强效和弱效抑制剂。同样基于随机森林的IC50回归模型的决定系数(R2)为0.93,具有较强的预测性能。2D和3D关键分子性质,如疏水性、形状和电荷分布以及分子对称性,被认为是模型性能的关键因素。重要的是,这些鉴定的性质为控制a β聚集抑制的分子特征提供了有价值的见解,并可以作为合理设计有效和选择性a β聚集抑制剂的基础。因此,Amylo-IC50Pred代表了加速阿尔茨海默病药物发现的宝贵资源。
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引用次数: 0
Identifying Novel Spiro-Indenoquinoxaline-Pyrrolidine-Based Amyloid Beta Inhibitors in Alzheimer’s Disease from In Silico to In Vitro 从计算机到体外鉴定阿尔茨海默病中基于螺-茚地喹啉-吡咯烷的新型淀粉样蛋白β抑制剂
IF 3.9 3区 医学 Q2 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2025-11-03 DOI: 10.1021/acschemneuro.5c00728
Shital Rani, , , Mandeep Kaur, , , Pritiman Pothal, , , Kshitij Rajput, , , Alisha Khera, , , Akanksha Sharma, , , Varsha Thombare, , , Ashish Sethi, , , Bishwajit Paul, , , Janeka Gartia, , , Vinod Kumar Yadav, , , Nitin Aniruddha Patil, , , Pavitra Ranawat, , , Adukamparai Rajukrishnan Suresh Babu*, , , Gurpal Singh*, , and , Ravi Pratap Barnwal*, 

Alzheimer’s disease (AD) is the most prevalent neurodegenerative disease characterized by memory loss and other cognitive functions. The key hallmarks of AD include extracellular beta-amyloid clumps and intracellular neurofibrillary tau tangles in the neurons. Cholinesterase inhibitors and NMDA-receptor antagonists and their combination are already approved treatments; however, these only give short-term symptom relief. Therefore, new therapeutic techniques and novel drugs are required to combat the century-old AD. This study includes the screening of nine novel small compounds (spiro-indenoquinoxaline-pyrrolidines) via in silico approaches; these compounds have been scrutinized to explore their potential as antiamyloidogenic drugs. Computational tools, including ADMET analysis, molecular docking, and molecular dynamics (MD) simulations, have been used for screening the selected compounds against monomeric peptides of Aβ (Aβ1–40 and Aβ1–42) and their oligomeric counterparts, i.e., 6Aβ9–40 and 6Aβ1–42. Among the nine molecules screened for this study, ADPR-d reflected the best drug-likeness and negligible toxicity. Further, ADPR-d has the highest binding affinity for all the peptides selected for this study. Additionally, MD simulations of Aβ peptide–ADPR-d complexes confirmed a stable complex formation. In vitro aggregation assay and cell culture studies for Aβ1–42 also support our in silico findings. The positive findings of the presented study highlight that the ADPR-d molecule may prove to be a potential therapeutic molecule against AD. However, these results would require further in vitro and in vivo analysis before proceeding to clinical settings with these compounds against AD.

阿尔茨海默病(AD)是最常见的神经退行性疾病,其特征是记忆丧失和其他认知功能。AD的主要特征包括细胞外β -淀粉样蛋白团块和神经元细胞内神经原纤维tau缠结。胆碱酯酶抑制剂和nmda受体拮抗剂及其联合治疗已获批准;然而,这些只能短期缓解症状。因此,需要新的治疗技术和新药来对抗这种百年老病。本研究包括通过计算机筛选九种新的小化合物(螺-吲哚喹啉-吡咯烷);这些化合物已被仔细研究,以探索其作为抗淀粉样变性药物的潜力。利用ADMET分析、分子对接和分子动力学(MD)模拟等计算工具筛选了抗Aβ单体肽(Aβ1-40和Aβ1-42)及其寡聚物(6Aβ9-40和6Aβ1-42)的化合物。在本研究筛选的9个分子中,ADPR-d具有最佳的药物相似性和可忽略的毒性。此外,ADPR-d对本研究选择的所有肽具有最高的结合亲和力。此外,a β肽- adpr -d复合物的MD模拟证实了稳定的复合物形成。a - β1-42的体外聚集实验和细胞培养研究也支持我们在计算机上的发现。本研究的积极结果强调ADPR-d分子可能被证明是一种潜在的治疗AD的分子。然而,在将这些化合物用于临床治疗AD之前,这些结果需要进一步的体外和体内分析。
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ACS Chemical Neuroscience
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