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Novel Variant in the NLRP12 Gene: Insights From a Case Report and Systematic Review. NLRP12基因的新变异:来自病例报告和系统回顾的见解。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-19 DOI: 10.1111/iji.70028
Abdelhamid Bouramtane, Badreddine Elmakhzen, Hinde Elmouhi, Mohamed Ahakoud, Laila Bouguenouch, Karim Ouldim, Omar Askander

Familial cold autoinflammatory syndrome 2 is a rare autoinflammatory disorder caused by mutations in the NLRP12 gene, characterized by recurrent fever, arthralgia and rash triggered by cold exposure. This case report presents a 9-year-old boy with intellectual disability, microcephaly and skin lesions, where genetic testing revealed heterozygous pathogenic variants in both KIF11 (NM_004523.4:c.2304_2305del) and NLRP12 (NM_144687.4:c.770del) genes. While the KIF11 variant has been previously documented, the NLRP12 variant is novel and classified as likely pathogenic. This study also includes a systematic review analysing 28 studies and 100 patients with NLRP12 mutations, revealing a phenotypic spectrum ranging from classic symptoms like fever and rash to rarer features such as hypogonadism, hypothyroidism and neurological abnormalities. A significant concentration of variants was noted in Exon 3 of NLRP12, but no clear genotype-phenotype correlation was established. These findings underscore the utility of next-generation sequencing in diagnosing rare genetic conditions, particularly in patients presenting with seemingly minor symptoms. The coexistence of mutations in KIF11 and NLRP12 highlights potential interactions between distinct genetic pathways, emphasizing the need for further research. Including NLRP12 in diagnostic panels and updating databases like the Human Phenotype Ontology are crucial for improving diagnosis, understanding phenotypic diversity and optimizing patient management.

家族性感冒自身炎症综合征2是一种罕见的由NLRP12基因突变引起的自身炎症性疾病,以寒冷暴露引发的反复发热、关节痛和皮疹为特征。本病例报告报告了一名患有智力残疾、小头畸形和皮肤病变的9岁男孩,基因检测显示KIF11 (NM_004523.4:c.2304_2305del)和NLRP12 (NM_144687.4:c.770del)基因的杂合致病变异。虽然KIF11变体之前已被记录,但NLRP12变体是新的,并被归类为可能致病。该研究还包括对28项研究和100名NLRP12突变患者的系统回顾分析,揭示了从发烧和皮疹等经典症状到性腺功能减退、甲状腺功能减退和神经异常等罕见特征的表型谱。在NLRP12的外显子3中发现了显著的变异浓度,但没有明确的基因型-表型相关性。这些发现强调了下一代测序在诊断罕见遗传疾病方面的效用,特别是在出现看似轻微症状的患者中。KIF11和NLRP12突变的共存突出了不同遗传途径之间潜在的相互作用,强调了进一步研究的必要性。将NLRP12纳入诊断小组和更新数据库(如Human Phenotype Ontology)对于提高诊断、理解表型多样性和优化患者管理至关重要。
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引用次数: 0
The Impact of TLR4 rs41426344 Polymorphism on Ankylosing Spondylitis Disease Activity: A Study in Turkish Patients TLR4 rs41426344多态性对强直性脊柱炎疾病活动性的影响:土耳其患者的研究
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-18 DOI: 10.1111/iji.70027
Duygu Kirkik, Sevgi Kalkanli Tas, Betül Dogantekin, Mesut Kariksiz, Barış Gündogdu, Fatih Hacimustafaoglu, Rahime Aksoy

Ankylosing spondylitis (AS) is a chronic inflammatory disease primarily affecting the axial skeleton and sacroiliac joints, with both genetic and environmental factors playing a role in its pathogenesis. Toll-like receptor 4 (TLR4) has been implicated in immune response and inflammation, but its genetic variations have not been extensively studied in AS. This study investigates the association between the TLR4 rs41426344 polymorphism and AS susceptibility and disease activity in a Turkish population. A total of 200 participants (100 AS patients and 100 healthy controls) were recruited. Genotyping of the TLR4 rs41426344 (G/C) polymorphism was performed using real-time PCR melting curve analysis. Disease activity was assessed using Bath Ankylosing Spondylitis Functional Index (BASFI), Bath Ankylosing Spondylitis Disease Activity Index (BASDAI) and Ankylosing Spondylitis Disease Activity Score with C-reactive protein (ASDAS-CRP) scores. Statistical analyses were conducted to determine the association between genotypes and disease risk. The CC genotype was significantly associated with AS susceptibility, with an odds ratio (OR) of 10.000 (95% CI: 4.091–24.431, p < 0.0000001), indicating a strong genetic risk factor. Additionally, CC genotype carriers exhibited higher BASFI, BASDAI and ASDAS-CRP scores, suggesting greater disease severity and inflammation levels. A statistically significant difference (p < 0.05) was observed in ASDAS-CRP scores between CC and GC genotypes This is the first study to investigate the TLR4 rs41426344 polymorphism in AS, and our findings indicate a strong association with both disease susceptibility and severity in the Turkish cohort. These findings reinforce the role of innate immunity in AS pathogenesis and suggest that TLR4 polymorphisms may serve as potential genetic markers for AS risk assessment and disease activity monitoring.

强直性脊柱炎(AS)是一种主要影响中轴骨骼和骶髂关节的慢性炎症性疾病,其发病机制与遗传和环境因素有关。toll样受体4 (TLR4)与免疫反应和炎症有关,但其遗传变异尚未在AS中得到广泛研究。本研究调查了土耳其人群中TLR4 rs41426344多态性与AS易感性和疾病活动性之间的关系。总共招募了200名参与者(100名AS患者和100名健康对照)。采用实时荧光定量PCR熔融曲线分析TLR4 rs41426344 (G/C)多态性基因分型。采用巴斯强直性脊柱炎功能指数(BASFI)、巴斯强直性脊柱炎疾病活动性指数(BASDAI)和强直性脊柱炎疾病活动性评分(c -反应蛋白)评分来评估疾病活动性。进行统计分析以确定基因型与疾病风险之间的关系。CC基因型与AS易感性显著相关,优势比(OR)为10,000 (95% CI: 4.091-24.431, p
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引用次数: 0
Genetic and Epigenetic Phenomena in the Neutrophil Developmental Program 中性粒细胞发育过程中的遗传和表观遗传现象。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-09 DOI: 10.1111/iji.70025
Milena N. Leseva, Petya A. Dimitrova

Neutrophils are short-lived innate immune cells, which develop in the bone marrow and replenish daily the circulatory and marginal pools in various organs in the steady state. Recent technological advances have reshaped the traditional paradigms for neutrophil biology and have identified intriguing (epi)genetic phenomena associated with their differentiation, maturation and function. Herein we summarise these developments and discuss: the new model for instructed programming of neutrophil development and continuous cell development via the lineage trajectory path; new aspects of epigenetic regulation of neutrophil development and in particular changes in chromatin structure, 3D architecture as well as heterochromatin condensation during nuclear segmentation; the remarkable breadth of neutrophil heterogeneity and the atypical function of neutrophils acting as antigen-presenting cells. Understanding these concepts can advance the design of new models of in vitro neutrophil generation and drug discovery in immune-mediated disease and cancer where neutrophils play important roles in the pathogenesis.

中性粒细胞是一种寿命较短的先天免疫细胞,在骨髓中发育,每天稳定地补充各种器官的循环和边缘池。最近的技术进步重塑了中性粒细胞生物学的传统范式,并发现了与它们的分化、成熟和功能相关的有趣(epi)遗传现象。在此,我们总结了这些进展并讨论了:中性粒细胞发育的指示编程和通过谱系轨迹路径的连续细胞发育的新模型;中性粒细胞发育的表观遗传调控的新方面,特别是染色质结构、三维结构以及核分割期间异染色质凝聚的变化;中性粒细胞异质性的显著广度和中性粒细胞作为抗原呈递细胞的非典型功能。了解这些概念可以促进体外中性粒细胞生成新模型的设计和免疫介导疾病和癌症的药物发现,其中中性粒细胞在发病机制中起重要作用。
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引用次数: 0
Study of Interferon-Induced Transmembrane Protein 3 Gene Polymorphism and Serum Interferon-λ3 Level in COVID-19 COVID-19中干扰素诱导的跨膜蛋白3基因多态性及血清干扰素-λ3水平的研究
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-06 DOI: 10.1111/iji.70024
Rana Saudi, Heba Kamal, Iman Elshabrawy, Ali Sobh, Marwa H. Elnagdy

Background: Variations in individuals’ susceptibility to coronavirus disease 2019 may be linked to the presence of genetic polymorphisms. The interferon-induced transmembrane 3 (IFITM3) has a powerful protective function by blocking viral entry into the host cell. Similarly, Interferon Lambda 3 (IFNL3) binds to its receptors and induces a variety of interferon-stimulated genes (ISGs) that inhibit viral replication. Our study aimed to investigate the potential association of IFITM3 gene polymorphism (rs12252) as well as serum IFNL3 level with COVID-19 infection, severity, and mortality.

Method: This case-control study was held during the period from July 2021 to October 2022 in Mansoura University hospitals in Egypt. We included 100 healthy controls and 154 COVID-19 patients. TaqMan real-time polymerase chain reaction was used for allelic discrimination in the genotyping of rs12252 of the IFITM3 gene. Serum IFNL-3 was assayed using the ELISA technique.

Results: The genotype and allele frequency distributions of the rs12252 showed that the frequency of the G allele and AG/GG genotypes was significantly higher in patients than in controls, with no significant association with either disease severity or outcome. Serum IFNL3 level is significantly higher among patients, with no statistically significant difference between mild and severe cases and no significant association with the outcome of COVID-19.

Conclusion: We found that the AG genotype and G allele of IFITM3 rs12252 are associated with COVID-19 infection in the Egyptian population but not with severity or outcome. Additionally, serum IFNL3 level is significantly associated with COVID-19 susceptibility but not with severity. It is associated with tachypnea and end-organ failure in severe cases. So, they are independent predictors only for developing COVID-19 infection, but not for developing severe infection.

背景:个体对2019冠状病毒病易感性的差异可能与遗传多态性的存在有关。干扰素诱导的跨膜3 (IFITM3)通过阻断病毒进入宿主细胞具有强大的保护功能。同样,干扰素Lambda 3 (IFNL3)与其受体结合并诱导多种干扰素刺激基因(isg)抑制病毒复制。本研究旨在探讨IFITM3基因多态性(rs12252)和血清IFNL3水平与COVID-19感染、严重程度和死亡率的潜在关联。方法:本病例对照研究于2021年7月至2022年10月在埃及曼苏拉大学附属医院进行。我们纳入了100名健康对照和154名COVID-19患者。IFITM3基因rs12252基因分型采用TaqMan实时聚合酶链反应进行等位基因区分。采用ELISA技术检测血清IFNL-3。结果:rs12252基因型和等位基因频率分布显示,患者中G等位基因频率和AG/GG基因型明显高于对照组,与疾病严重程度和转归无显著相关性。患者血清IFNL3水平明显升高,轻、重度患者血清IFNL3水平差异无统计学意义,与COVID-19转归无显著相关性。结论:我们发现IFITM3 rs12252的AG基因型和G等位基因与埃及人群的COVID-19感染有关,但与严重程度或结果无关。此外,血清IFNL3水平与COVID-19易感性显著相关,但与严重程度无关。严重者伴呼吸急促和终末器官衰竭。因此,它们仅是发生COVID-19感染的独立预测因子,而不是发生严重感染的独立预测因子。
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引用次数: 0
Revisiting the Smoking-Rheumatoid Arthritis Relationship Unraveling an Unexpected Protective Effect in a Pakistani Cohort 重新审视吸烟与类风湿关节炎的关系:在巴基斯坦队列中揭示了意想不到的保护作用。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-03 DOI: 10.1111/iji.70019
Rong-Min Xu, An-Hua Zheng, Shun-Dong Li, Lian-Ping He
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引用次数: 0
Non-Association of Smoking With RA 吸烟与类风湿性关节炎无关。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-03 DOI: 10.1111/iji.70026
Kashif Bashir
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引用次数: 0
Association of SOCS6 Gene Polymorphisms and Promoter Hypermethylation With the Progression of Hepatitis B Virus Infection SOCS6基因多态性和启动子超甲基化与乙型肝炎病毒感染进展的关系
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-11-01 DOI: 10.1111/iji.70023
Nguyen Viet Phuong, Pham Van Dung, Le Quang Nhut, Le Van Khanh, Tran Thi Phuong Thao, Ngo Thu Hang, Nguyen Duc Ky, Nguyen Minh Hai, Nguyen Xuan Khai, Tran Viet Tien, Can Van Mao, Nguyen Linh Toan, Hoang Van Tong

Chronic hepatitis B (CHB) is a major risk factor for liver cirrhosis (LC) and hepatocellular carcinoma (HCC). Genes involved in the JAK/STAT signalling pathway play a critical role in the pathogenesis of HBV-related liver diseases, especially HCC. Although SOCS1 and SOCS3 have been extensively studied, the role of SOCS6 in HBV infection and disease progression remains unclear. This study aimed to investigate the association between SOCS6 gene polymorphisms and promoter methylation with HBV-related liver diseases.

This study examined SOCS6 gene polymorphisms in a cohort of 335 patients with HBV-related liver diseases (120 with CHB, 100 with LC and 115 with HCC) and 120 healthy controls (HCs). In addition, SOCS6 promoter methylation was analysed in tumour and adjacent tissues from 41 HCC patients.

We found that the rs2062345GA genotype and the dominant genetic model were associated with an increased risk of HBV infection and HCC. The rs7228049GA genotype increased the risk of LC and HCC. Conversely, the rs7228049AA genotype and the recessive model were associated with a reduced risk of CHB, LC and HCC. The SNPs rs2062345, rs7228049 and rs11151580 were related to several clinical parameters such as AST, albumin and prothrombin levels, platelet counts in LC and HCC patients. Promoter hypermethylation of SOCS6 was more prevalent in tumour tissues, especially in larger tumours with poorer histological differentiation (p < 0.01 and p < 0.05, respectively).

SOCS6 gene variants and promoter methylation are associated with susceptibility and progression of HBV-related liver diseases. These findings suggest their potential utility as useful prognostic biomarkers for HCC.

慢性乙型肝炎(CHB)是肝硬化(LC)和肝细胞癌(HCC)的主要危险因素。参与JAK/STAT信号通路的基因在hbv相关肝脏疾病,特别是HCC的发病机制中起关键作用。尽管SOCS1和SOCS3已被广泛研究,但SOCS6在HBV感染和疾病进展中的作用仍不清楚。本研究旨在探讨SOCS6基因多态性和启动子甲基化与hbv相关肝病的关系。本研究在335例hbv相关肝病患者(CHB患者120例,LC患者100例,HCC患者115例)和120例健康对照(hc)中检测了SOCS6基因多态性。此外,在41例HCC患者的肿瘤和邻近组织中分析了SOCS6启动子甲基化。我们发现rs2062345GA基因型和显性遗传模型与HBV感染和HCC风险增加相关。rs7228049GA基因型增加了LC和HCC的风险。相反,rs7228049AA基因型和隐性模型与CHB、LC和HCC的风险降低相关。snp rs2062345、rs7228049和rs11151580与LC和HCC患者的AST、白蛋白和凝血酶原水平、血小板计数等多个临床参数相关。SOCS6的启动子超甲基化在肿瘤组织中更为普遍,特别是在组织学分化较差的较大肿瘤中(p
{"title":"Association of SOCS6 Gene Polymorphisms and Promoter Hypermethylation With the Progression of Hepatitis B Virus Infection","authors":"Nguyen Viet Phuong,&nbsp;Pham Van Dung,&nbsp;Le Quang Nhut,&nbsp;Le Van Khanh,&nbsp;Tran Thi Phuong Thao,&nbsp;Ngo Thu Hang,&nbsp;Nguyen Duc Ky,&nbsp;Nguyen Minh Hai,&nbsp;Nguyen Xuan Khai,&nbsp;Tran Viet Tien,&nbsp;Can Van Mao,&nbsp;Nguyen Linh Toan,&nbsp;Hoang Van Tong","doi":"10.1111/iji.70023","DOIUrl":"10.1111/iji.70023","url":null,"abstract":"<div>\u0000 \u0000 <p>Chronic hepatitis B (CHB) is a major risk factor for liver cirrhosis (LC) and hepatocellular carcinoma (HCC). Genes involved in the JAK/STAT signalling pathway play a critical role in the pathogenesis of HBV-related liver diseases, especially HCC. Although <i>SOCS1</i> and <i>SOCS3</i> have been extensively studied, the role of SOCS6 in HBV infection and disease progression remains unclear. This study aimed to investigate the association between <i>SOCS6</i> gene polymorphisms and promoter methylation with HBV-related liver diseases.</p>\u0000 <p>This study examined <i>SOCS6</i> gene polymorphisms in a cohort of 335 patients with HBV-related liver diseases (120 with CHB, 100 with LC and 115 with HCC) and 120 healthy controls (HCs). In addition, <i>SOCS6</i> promoter methylation was analysed in tumour and adjacent tissues from 41 HCC patients.</p>\u0000 <p>We found that the <i>rs2062345GA</i> genotype and the dominant genetic model were associated with an increased risk of HBV infection and HCC. The <i>rs7228049GA</i> genotype increased the risk of LC and HCC. Conversely, the <i>rs7228049AA</i> genotype and the recessive model were associated with a reduced risk of CHB, LC and HCC. The SNPs rs2062345, rs7228049 and rs11151580 were related to several clinical parameters such as AST, albumin and prothrombin levels, platelet counts in LC and HCC patients. Promoter hypermethylation of <i>SOCS6</i> was more prevalent in tumour tissues, especially in larger tumours with poorer histological differentiation (<i>p </i>&lt; 0.01 and <i>p </i>&lt; 0.05, respectively).</p>\u0000 <p><i>SOCS6</i> gene variants and promoter methylation are associated with susceptibility and progression of HBV-related liver diseases. These findings suggest their potential utility as useful prognostic biomarkers for HCC.</p>\u0000 </div>","PeriodicalId":14003,"journal":{"name":"International Journal of Immunogenetics","volume":"53 1","pages":"30-40"},"PeriodicalIF":1.1,"publicationDate":"2025-11-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145421595","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unaddressed Confounding Factors Undermine Causal Inference in the Study on IL-6 Promoter Region Polymorphism and Type 2 Diabetes Mellitus in an Egyptian Centre 未解决的混杂因素破坏了IL-6启动子区域多态性与埃及中心2型糖尿病研究的因果推断。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-10-28 DOI: 10.1111/iji.70017
Hua-Qin Su, Ling-Su Wang, Lian-Ping He
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引用次数: 0
Response to “Unaddressed Confounding Factors Undermine Causal Inference in the Study on IL-6 Promoter Region Polymorphism and Type 2 Diabetes Mellitus in an Egyptian Centre” 对“在埃及中心IL-6启动子区域多态性和2型糖尿病研究中未解决的混杂因素破坏了因果推断”的回应。
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-10-28 DOI: 10.1111/iji.70022
Maysaa El Sayed Zaki, M. M. Motawea, A. M. Faheem, M. S. Ismail, N. T. A. El-Khier, A. M. Nada
{"title":"Response to “Unaddressed Confounding Factors Undermine Causal Inference in the Study on IL-6 Promoter Region Polymorphism and Type 2 Diabetes Mellitus in an Egyptian Centre”","authors":"Maysaa El Sayed Zaki,&nbsp;M. M. Motawea,&nbsp;A. M. Faheem,&nbsp;M. S. Ismail,&nbsp;N. T. A. El-Khier,&nbsp;A. M. Nada","doi":"10.1111/iji.70022","DOIUrl":"10.1111/iji.70022","url":null,"abstract":"","PeriodicalId":14003,"journal":{"name":"International Journal of Immunogenetics","volume":"53 1","pages":"67-68"},"PeriodicalIF":1.1,"publicationDate":"2025-10-28","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145389071","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An NLRP3 Variant Protects Against Severe COVID-19: An Unexpected Contribution of Inflammasome Genetics in SARS-CoV-2 Infection NLRP3变体可以预防严重的COVID-19:炎症小体遗传学在SARS-CoV-2感染中的意外贡献
IF 1.1 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2025-10-27 DOI: 10.1111/iji.70021
Leandro Martin Paulino, Vinicius Nunes Cordeiro Leal, Wellyngton Matheus de Souza Santiago, Débora de Fátima Almeida Donanzam, Célio Roberto Siqueira Ledesma, Maria Fernanda Silva Bertelli, Wellington Santos Fava, Ana Carla Pereira Latini, Alessandra Pontillo, James Venturini

COVID-19, caused by the SARS-CoV-2 virus, manifests with varying degrees of severity, affecting individuals worldwide. The spectrum of symptoms ranges from mild to severe, with respiratory failure being a leading cause of death. Immunological factors, particularly excessive cytokine production such as IL-18 and IL-1β, significantly contribute to disease severity. In this context, the NLRP3 inflammasome, a key component of the innate immune system, has influenced COVID-19 outcomes. This study investigated the association between single-nucleotide variants (SNVs) in the NLRP3 inflammasome and COVID-19 severity. A case–control study was conducted involving 800 adult participants infected with SARS-CoV-2, stratified into mild/moderate and severe/critical cases. Genetic associations were assessed through qPCR-based genotyping. While no association was found between SNVs in IL1B and CASP1 with COVID-19 severity, the multivariate analysis revealed that the gain-of-function SNV in the NLRP3 gene (rs35829419) was associated with a protective effect against COVID-19–related mortality. These findings suggest that genetic variations in the NLRP3 inflammasome may modulate the host response to SARS-CoV-2, highlighting potential biomarkers for disease prognosis.

由SARS-CoV-2病毒引起的COVID-19表现出不同程度的严重程度,影响全世界的个体。症状范围从轻微到严重,呼吸衰竭是导致死亡的主要原因。免疫因素,特别是过多的细胞因子如IL-18和IL-1β的产生,显著地促进了疾病的严重程度。在这种情况下,NLRP3炎症小体(先天免疫系统的关键组成部分)影响了COVID-19的结局。本研究探讨了NLRP3炎症小体中单核苷酸变异(snv)与COVID-19严重程度之间的关系。对800名成年SARS-CoV-2感染者进行病例对照研究,分为轻/中度和重度/危重病例。通过基于qpcr的基因分型评估遗传相关性。虽然没有发现IL1B和CASP1中的SNV与COVID-19严重程度之间的关联,但多因素分析显示,NLRP3基因(rs35829419)中功能获得的SNV与对COVID-19相关死亡率的保护作用相关。这些发现表明,NLRP3炎症小体的遗传变异可能调节宿主对SARS-CoV-2的反应,突出了疾病预后的潜在生物标志物。
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引用次数: 0
期刊
International Journal of Immunogenetics
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