Pub Date : 2025-11-13DOI: 10.1016/j.ijfoodmicro.2025.111527
Pei Gao , Shuhan Yang , Qixing Jiang , Peipei Yu , Fang Yang , Xiaojing Zhang , Zhiqing Zhang , Shaoquan Liu , Wenshui Xia
2-Phenylethanol (2-PE), as a quorum-sensing signaling molecule, is widely present (produced by yeast) and can enhance yeast-driven fermentation flavors in foods such as wine. Previous studies have shown that 2-PE is also present/produced by the dominant strain S. cerevisiae 31 in fermented sour fish and affects its growth, metabolism and flavor. While extensive research has characterized the role of 2-phenylethanol (2-PE) as a quorum-sensing molecule in relatively simple fermentation systems like wine, its molecular mechanism in complex, high-protein matrices such as fermented sour fish remains largely unexplored. This study integrates untargeted metabolomics, transcriptomics, and various indicator to fill this critical gap, aiming to uncover the differential metabolite accumulation and molecular mechanisms that occur during the fermentation process of S. cerevisiae 31 upon the 2-PE supplement. KEGG pathway analysis showed that 2-PE mainly affected amino acid metabolizing pathway. Transcriptomic analysis further revealed that 2-PE supplementation significantly altered the expression of genes involved in cell wall biosynthesis, glycolysis, and the TCA cycle, providing a molecular basis for its effects on physiological metabolism and flavor synthesis. This study provides a novel molecular perspective for the targeted enhancement of flavor and quality in traditional fermented sour fish.
{"title":"Integrated transcriptomic and metabolomic analyses highlight the 2-phenylethanol impact on fermentation performance of Saccharomyces cerevisiae 31 from fermented sour fish","authors":"Pei Gao , Shuhan Yang , Qixing Jiang , Peipei Yu , Fang Yang , Xiaojing Zhang , Zhiqing Zhang , Shaoquan Liu , Wenshui Xia","doi":"10.1016/j.ijfoodmicro.2025.111527","DOIUrl":"10.1016/j.ijfoodmicro.2025.111527","url":null,"abstract":"<div><div>2-Phenylethanol (2-PE), as a quorum-sensing signaling molecule, is widely present (produced by yeast) and can enhance yeast-driven fermentation flavors in foods such as wine. Previous studies have shown that 2-PE is also present/produced by the dominant strain <em>S. cerevisiae</em> 31 in fermented sour fish and affects its growth, metabolism and flavor. While extensive research has characterized the role of 2-phenylethanol (2-PE) as a quorum-sensing molecule in relatively simple fermentation systems like wine, its molecular mechanism in complex, high-protein matrices such as fermented sour fish remains largely unexplored. This study integrates untargeted metabolomics, transcriptomics, and various indicator to fill this critical gap, aiming to uncover the differential metabolite accumulation and molecular mechanisms that occur during the fermentation process of <em>S. cerevisiae</em> 31 upon the 2-PE supplement. KEGG pathway analysis showed that 2-PE mainly affected amino acid metabolizing pathway. Transcriptomic analysis further revealed that 2-PE supplementation significantly altered the expression of genes involved in cell wall biosynthesis, glycolysis, and the TCA cycle, providing a molecular basis for its effects on physiological metabolism and flavor synthesis. This study provides a novel molecular perspective for the targeted enhancement of flavor and quality in traditional fermented sour fish.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111527"},"PeriodicalIF":5.2,"publicationDate":"2025-11-13","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145518697","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
In Comté cheese production, Streptococcus thermophilus and thermophilic lactobacilli (Lactobacillus delbrueckii and Lactobacillus helveticus) drive acidification and early fermentation. This study investigated their dynamics during ripening in cheeses from two factories, over two production periods, using culture-based counts, qPCR, and PMAxx-based viability-qPCR (v-qPCR). Two starter types were compared: a natural whey starter (NWS) and a defined S. thermophilus strain starter (control). Thermophilic starters persisted throughout ripening, but their dynamics varied with cell type (culturable, total, viable), species, and starter type. Culturable counts declined by 3–6 log units during ripening. S. thermophilus maintained high total and viable levels (≈7–8 log gu/g of cheese), with minimal discrepancies between qPCR and v-qPCR results in control cheeses, indicating a predominantly viable population. In contrast, L. delbrueckii and L. helveticus showed marked viability losses, with discrepancies of up to 3 log units between total and viable counts by the end of ripening, suggesting a higher increase in non-viable lactobacilli compared to S. thermophilus. Starter type significantly influenced S. thermophilus culturability and viability, with the control strain maintaining higher levels over time, suggesting the importance of strain composition in the starter. No effect was observed on lactobacilli culturability. It was only observed for total and viable L. helveticus, depending on the period. v-qPCR effectively quantified viable thermophilic starters and revealed that culture-based methods underestimated viable populations. The persistence of thermophilic starters in multiple physiological states, influenced by the starter type, questions their potential functional role in flavor and texture development during cheese maturation.
{"title":"Dynamics of thermophilic starters in PDO Comté cheese: Insights from viability qPCR","authors":"Christine Achilleos , Jade Lutin , Franck Dufrene , Philippe Guyot , Romain Palme , Yvette Bouton , Solange Buchin","doi":"10.1016/j.ijfoodmicro.2025.111530","DOIUrl":"10.1016/j.ijfoodmicro.2025.111530","url":null,"abstract":"<div><div>In Comté cheese production, <em>Streptococcus thermophilus</em> and thermophilic lactobacilli (<em>Lactobacillus delbrueckii</em> and <em>Lactobacillus helveticus</em>) drive acidification and early fermentation. This study investigated their dynamics during ripening in cheeses from two factories, over two production periods, using culture-based counts, qPCR, and PMAxx-based viability-qPCR (v-qPCR). Two starter types were compared: a natural whey starter (NWS) and a defined <em>S. thermophilus</em> strain starter (control). Thermophilic starters persisted throughout ripening, but their dynamics varied with cell type (culturable, total, viable), species, and starter type. Culturable counts declined by 3–6 log units during ripening. <em>S. thermophilus</em> maintained high total and viable levels (≈7–8 log gu/g of cheese), with minimal discrepancies between qPCR and v-qPCR results in control cheeses, indicating a predominantly viable population. In contrast, <em>L. delbrueckii</em> and <em>L. helveticus</em> showed marked viability losses, with discrepancies of up to 3 log units between total and viable counts by the end of ripening, suggesting a higher increase in non-viable lactobacilli compared to <em>S. thermophilus</em>. Starter type significantly influenced <em>S. thermophilus</em> culturability and viability, with the control strain maintaining higher levels over time, suggesting the importance of strain composition in the starter. No effect was observed on lactobacilli culturability. It was only observed for total and viable L. <em>helveticus</em>, depending on the period. v-qPCR effectively quantified viable thermophilic starters and revealed that culture-based methods underestimated viable populations. The persistence of thermophilic starters in multiple physiological states, influenced by the starter type, questions their potential functional role in flavor and texture development during cheese maturation.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111530"},"PeriodicalIF":5.2,"publicationDate":"2025-11-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145512626","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-11DOI: 10.1016/j.ijfoodmicro.2025.111518
Xinyi Pang , Yunting Wang , Zeyin Feng , Rui Xu , Jing Sun , Xiangfei Li , Yingjian Lu , Hyun-Gyun Yuk
Listeria monocytogenes is an important foodborne pathogen that can persist in food-processing environments and threatens public health by causing fatal listeriosis. During transmission from the non-host to the host environment, L. monocytogenes encounters a variety of stresses and regulates gene expression by coordinately relying on quorum sensing (QS). With many recent studies on QS inhibitors (QSIs) targeting L. monocytogenes, an in-depth understanding of the QS regulatory mechanisms and the updated application status of QSIs for combating L. monocytogenes is necessary. This review systematically discusses the accessory gene regulator (Agr) system and LuxS system in L. monocytogenes, with a special focus on their regulatory mechanisms associated with biofilm formation, virulence expression, and antimicrobial resistance. Notably, the regulation of Agr system can be modulated by environmental stresses including temperature, nutrient availability and disinfectant exposure. Furthermore, natural (plant-derived compounds and bacterial metabolites) and synthetic QSIs of L. monocytogenes are summarized, and their potential as alternative biocontrol agents is comprehensively evaluated. Finally, the challenges limiting the application of QSIs in the food industry are discussed, along with the outlines of potential avenues for future aspects such as incorporation or coating nanomaterials with QSIs. This review provides an overview of QS regulatory mechanisms in L. monocytogenes and perspectives on the potential of QSIs as novel antimicrobial agents in the food industry.
{"title":"Quorum sensing in Listeria monocytogenes and control strategies for its inhibition in the food industry","authors":"Xinyi Pang , Yunting Wang , Zeyin Feng , Rui Xu , Jing Sun , Xiangfei Li , Yingjian Lu , Hyun-Gyun Yuk","doi":"10.1016/j.ijfoodmicro.2025.111518","DOIUrl":"10.1016/j.ijfoodmicro.2025.111518","url":null,"abstract":"<div><div><em>Listeria monocytogenes</em> is an important foodborne pathogen that can persist in food-processing environments and threatens public health by causing fatal listeriosis. During transmission from the non-host to the host environment, <em>L. monocytogenes</em> encounters a variety of stresses and regulates gene expression by coordinately relying on quorum sensing (QS). With many recent studies on QS inhibitors (QSIs) targeting <em>L</em>. <em>monocytogenes</em>, an in-depth understanding of the QS regulatory mechanisms and the updated application status of QSIs for combating <em>L</em>. <em>monocytogenes</em> is necessary. This review systematically discusses the accessory gene regulator (Agr) system and LuxS system in <em>L</em>. <em>monocytogenes</em>, with a special focus on their regulatory mechanisms associated with biofilm formation, virulence expression, and antimicrobial resistance. Notably, the regulation of Agr system can be modulated by environmental stresses including temperature, nutrient availability and disinfectant exposure. Furthermore, natural (plant-derived compounds and bacterial metabolites) and synthetic QSIs of <em>L</em>. <em>monocytogenes</em> are summarized, and their potential as alternative biocontrol agents is comprehensively evaluated<em>.</em> Finally, the challenges limiting the application of QSIs in the food industry are discussed, along with the outlines of potential avenues for future aspects such as incorporation or coating nanomaterials with QSIs. This review provides an overview of QS regulatory mechanisms in <em>L</em>. <em>monocytogenes</em> and perspectives on the potential of QSIs as novel antimicrobial agents in the food industry.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"447 ","pages":"Article 111518"},"PeriodicalIF":5.2,"publicationDate":"2025-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145677444","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-11DOI: 10.1016/j.ijfoodmicro.2025.111528
Jinjing Yuan , Lifei Lai , Mengmeng Li , Ziqi Xiao , Yuan Liu , Xinyu Li , Haixia Zhang , Qi Zhu , Weifeng Sun , Wenwu Ding
Considering the flavor disadvantages of the strong acidity and whole pungency in Pixian Douban (PXDB) of the tank fermentation, an improvement was obtained by the bioaugmentation of B. licheniformis JY and B. atrophaeus XY, and the underlying mechanism was explored by whole-genome and metatranscriptomics. The key volatiles contents especially for phenethyl alcohol, 1-nonanal, and 4-ethylphenol were increased by Bacillus bioaugmentation while the acid content was reduced. The metatranscriptome analysis indicated that Zygosaccharomyces and Bacillus were the dominant strains in the group of Bacillus bioaugmentation while the key life functions of microorganisms remained highly active, effectively driving the metabolic activities related to flavors. The multi-omics analysis showed that the metabolic activities related to the flavors of the initial fermentation were promoted by the up-regulated DEGs while the metabolic activities like protein synthesis in the later fermentation was inhibited by the down-regulated DEGs. Seven DEGs of significant expression in the predicated metabolic pathways of these two Bacillus strains were found, which implied a promotion of the downstream pathways that could contribute to the flavor improvement, providing a potential explanation for the flavor improvement of the product. The combined analysis of the sample qualities and multi-omics results indicated that the Bacillus bioaugmentation was effective but declined with fermentation time, suggesting a necessary of keeping bioaugmentation by regularly adding Bacillus strains. The results of this study provided a potential interpretation for Bacillus bioaugmentation in the PXDB fermentation, which offered a reference for the microbial agent development of PXDB fermentation in the tank.
{"title":"Molecular interpretation of flavor improvement for Pixian Douban fermented with Bacillus bioaugmentation in the tank based on whole-genome and metatranscriptomics","authors":"Jinjing Yuan , Lifei Lai , Mengmeng Li , Ziqi Xiao , Yuan Liu , Xinyu Li , Haixia Zhang , Qi Zhu , Weifeng Sun , Wenwu Ding","doi":"10.1016/j.ijfoodmicro.2025.111528","DOIUrl":"10.1016/j.ijfoodmicro.2025.111528","url":null,"abstract":"<div><div>Considering the flavor disadvantages of the strong acidity and whole pungency in Pixian Douban (PXDB) of the tank fermentation, an improvement was obtained by the bioaugmentation of <em>B. licheniformis</em> JY and <em>B. atrophaeus</em> XY<em>,</em> and the underlying mechanism was explored by whole-genome and metatranscriptomics. The key volatiles contents especially for phenethyl alcohol, 1-nonanal, and 4-ethylphenol were increased by <em>Bacillus</em> bioaugmentation while the acid content was reduced. The metatranscriptome analysis indicated that <em>Zygosaccharomyces</em> and <em>Bacillus</em> were the dominant strains in the group of <em>Bacillus</em> bioaugmentation while the key life functions of microorganisms remained highly active, effectively driving the metabolic activities related to flavors. The multi-omics analysis showed that the metabolic activities related to the flavors of the initial fermentation were promoted by the up-regulated DEGs while the metabolic activities like protein synthesis in the later fermentation was inhibited by the down-regulated DEGs. Seven DEGs of significant expression in the predicated metabolic pathways of these two <em>Bacillus</em> strains were found, which implied a promotion of the downstream pathways that could contribute to the flavor improvement, providing a potential explanation for the flavor improvement of the product. The combined analysis of the sample qualities and multi-omics results indicated that the <em>Bacillu</em>s bioaugmentation was effective but declined with fermentation time, suggesting a necessary of keeping bioaugmentation by regularly adding <em>Bacillus</em> strains. The results of this study provided a potential interpretation for <em>Bacillus</em> bioaugmentation in the PXDB fermentation, which offered a reference for the microbial agent development of PXDB fermentation in the tank.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111528"},"PeriodicalIF":5.2,"publicationDate":"2025-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145518699","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-11DOI: 10.1016/j.ijfoodmicro.2025.111517
Mingye Peng , Bo Li , Yunli Zhu , Lu Guo , Lei Deng , Zhicong Shen , Zhiwen Jia , Yang Chen , Junjun Gao , Mengzhou Zhou
Brewing microbes play a crucial role in regulating the fermentation process and quality characteristics of Chinese traditional fermented foods, particularly grain vinegar. However, in the context of acetic acid fermentation, the phylogenetic characteristics, community assembly mechanisms, and environmental drivers of bacterial communities under complex environmental gradients remain insufficiently explored, particularly the differences between abundant and rare taxa. In this study, the acetic acid fermentation of Zhenjiang aromatic vinegar was employed as a model to systematically analyze the phylogenetic niche distribution, community assembly processes, and key environmental drivers associated with abundant and rare bacterial taxa. We found that abundant taxa exhibited broader ecological niches and lower phylogenetic clustering than rare taxa, while rare taxa displayed stronger phylogenetic signals and broader environmental response thresholds. Homogeneous selection of deterministic processes dominated the assembly of abundant taxa. In contrast, stochastic processes were the primary drivers of rare taxa assembly, as further supported by neutral theory models. pH and ethanol were identified as the key environmental factors influencing the community assembly of abundant and rare bacterial taxa, respectively. These findings provide new insights into the phylogenetic responses and community assembly mechanisms of brewing microbes adapting to environmental changes in complex fermentation ecosystems.
{"title":"Distinct phylogenetic patterns and assembly processes of abundant and rare taxa in traditional grain vinegar fermentation ecosystem","authors":"Mingye Peng , Bo Li , Yunli Zhu , Lu Guo , Lei Deng , Zhicong Shen , Zhiwen Jia , Yang Chen , Junjun Gao , Mengzhou Zhou","doi":"10.1016/j.ijfoodmicro.2025.111517","DOIUrl":"10.1016/j.ijfoodmicro.2025.111517","url":null,"abstract":"<div><div>Brewing microbes play a crucial role in regulating the fermentation process and quality characteristics of Chinese traditional fermented foods, particularly grain vinegar. However, in the context of acetic acid fermentation, the phylogenetic characteristics, community assembly mechanisms, and environmental drivers of bacterial communities under complex environmental gradients remain insufficiently explored, particularly the differences between abundant and rare taxa. In this study, the acetic acid fermentation of Zhenjiang aromatic vinegar was employed as a model to systematically analyze the phylogenetic niche distribution, community assembly processes, and key environmental drivers associated with abundant and rare bacterial taxa. We found that abundant taxa exhibited broader ecological niches and lower phylogenetic clustering than rare taxa, while rare taxa displayed stronger phylogenetic signals and broader environmental response thresholds. Homogeneous selection of deterministic processes dominated the assembly of abundant taxa. In contrast, stochastic processes were the primary drivers of rare taxa assembly, as further supported by neutral theory models. pH and ethanol were identified as the key environmental factors influencing the community assembly of abundant and rare bacterial taxa, respectively. These findings provide new insights into the phylogenetic responses and community assembly mechanisms of brewing microbes adapting to environmental changes in complex fermentation ecosystems.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111517"},"PeriodicalIF":5.2,"publicationDate":"2025-11-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145563802","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
During fermentation, incorporation of food grade lactic acid bacteria that synthesize functional metabolites, such as vitamins, prebiotics, and bioactive compounds is an efficient strategy for in situ biofortification of food. In this study, exposure of the dextran-producer Leuconostoc mesenteroides B12 to roseoflavin (300 μg) resulted in the selection of the riboflavin-overproducing B12-B2 strain, which produced high levels of riboflavin (vitamin B2) (1.5 mg/L) and dextran (2.92 g/L) in a synthetic medium. During fermentation of a commercial oat-based beverage over 24 h, B12-B2 exhibited good cell growth (up to 3.16 × 1011 CFU/mL), together with high metabolic activity, acidification capability (42.4°D) and high CO₂ production (26 mM). Moreover, B12-B2 efficiently produced riboflavin (0.57 mg/L), dextran (5.32 mM), mannitol (79.21 mM), lactic acid (29.98 mM) and the prebiotic oligosaccharide panose (13.39 mM). The dynamic viscosity of the oat-based beverage increased significantly during fermentation with B12-B2 (to approximately 305.5 mPa·s). The ability to reduce pH values and influence in cell viability was confirmed after a storage period of 28 days. The present study highlights, for the first time, the potential of L. mesenteroides for the biofortification of plant-based beverages, a product category in which this species has not previously been employed as a starter or additive culture.
{"title":"Oat-based beverage biofortification with the novel riboflavin-overproducing and dextran-producing Leuconostoc mesenteroides B12-B2 strain","authors":"Kenza Zarour , Annel M. Hernández-Alcántara , Farah Bouacheria , Lylia Yamina Boufatah , Leonor Rodríguez-Sánchez , Paloma López , Mari Luz Mohedano","doi":"10.1016/j.ijfoodmicro.2025.111513","DOIUrl":"10.1016/j.ijfoodmicro.2025.111513","url":null,"abstract":"<div><div>During fermentation, incorporation of food grade lactic acid bacteria that synthesize functional metabolites, such as vitamins, prebiotics, and bioactive compounds is an efficient strategy for <em>in situ</em> biofortification of food. In this study, exposure of the dextran-producer <em>Leuconostoc mesenteroides</em> B12 to roseoflavin (300 μg) resulted in the selection of the riboflavin-overproducing B12-B2 strain, which produced high levels of riboflavin (vitamin B<sub>2</sub>) (1.5 mg/L) and dextran (2.92 g/L) in a synthetic medium. During fermentation of a commercial oat-based beverage over 24 h, B12-B2 exhibited good cell growth (up to 3.16 × 10<sup>11</sup> CFU/mL), together with high metabolic activity, acidification capability (42.4°D) and high CO₂ production (26 mM). Moreover, B12-B2 efficiently produced riboflavin (0.57 mg/L), dextran (5.32 mM), mannitol (79.21 mM), lactic acid (29.98 mM) and the prebiotic oligosaccharide panose (13.39 mM). The dynamic viscosity of the oat-based beverage increased significantly during fermentation with B12-B2 (to approximately 305.5 mPa·s). The ability to reduce pH values and influence in cell viability was confirmed after a storage period of 28 days. The present study highlights, for the first time, the potential of <em>L</em>. <em>mesenteroides</em> for the biofortification of plant-based beverages, a product category in which this species has not previously been employed as a starter or additive culture.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111513"},"PeriodicalIF":5.2,"publicationDate":"2025-11-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145495521","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-06DOI: 10.1016/j.ijfoodmicro.2025.111515
Miru Lee , Jeong-Ih Shin , Amany Hassan , Yeun-Jun Chung , Seung-Hyun Jung , Kun Taek Park
Listeria monocytogenes, a major foodborne pathogen, causes invasive listeriosis with a high mortality rate. Its distribution and genomic diversity in livestock products in Korea remain poorly understood. This study investigated the prevalence and genomic characteristics of L. monocytogenes across Korean pork production and distribution chains. Samples from pigs, carcasses, meat, and the environment were collected from farms, slaughterhouses, and supermarkets nationwide. L. monocytogenes was recovered from 60 retail meat samples (19.0 %) but not from farms or slaughterhouses, suggesting that contamination occurs mainly during downstream processing and distribution. Whole-genome sequencing identified nine sequence types (STs) across two lineages, with Lineage II-ST9 being most prevalent. Within ST9, the core genome multilocus sequence typing-defined CT4379 subgroup was widespread across all provinces and harbored repUS43 plasmid replicon and tetM within a horizontal gene-transfer structure, also found in other Listeria STs and bacterial species. All ST9 isolates carried a premature stop codon (PMSC) in inlA. Two Lineage I-ST224 isolates were evolutionary linked to the outbreak strain FSCNU0110 in Korea in 2018, sharing an identical llsX PMSC in Listeria pathogenicity island (LIPI)-3. LIPI-4 was exclusively detected in ST87, a hypervirulent clone found in multiple provinces. Seven isolates from imported pork were ST3 and ST321, indicating potential international transmission via pork trade. All isolates possessed intrinsic antimicrobial resistance genes. The detection of persistent and hypervirulent clones in final pork products underscores the need for high-resolution genomic surveillance and strict hygiene interventions during meat processing and distribution for reducing the occurrence of listeriosis.
{"title":"Prevalence, antimicrobial resistance, and genetic characterization of Listeria monocytogenes in the Korean pork production chain","authors":"Miru Lee , Jeong-Ih Shin , Amany Hassan , Yeun-Jun Chung , Seung-Hyun Jung , Kun Taek Park","doi":"10.1016/j.ijfoodmicro.2025.111515","DOIUrl":"10.1016/j.ijfoodmicro.2025.111515","url":null,"abstract":"<div><div><em>Listeria monocytogenes</em>, a major foodborne pathogen, causes invasive listeriosis with a high mortality rate. Its distribution and genomic diversity in livestock products in Korea remain poorly understood. This study investigated the prevalence and genomic characteristics of <em>L. monocytogenes</em> across Korean pork production and distribution chains. Samples from pigs, carcasses, meat, and the environment were collected from farms, slaughterhouses, and supermarkets nationwide. <em>L. monocytogenes</em> was recovered from 60 retail meat samples (19.0 %) but not from farms or slaughterhouses, suggesting that contamination occurs mainly during downstream processing and distribution. Whole-genome sequencing identified nine sequence types (STs) across two lineages, with Lineage II-ST9 being most prevalent. Within ST9, the core genome multilocus sequence typing-defined CT4379 subgroup was widespread across all provinces and harbored <em>repUS43</em> plasmid replicon and <em>tetM</em> within a horizontal gene-transfer structure, also found in other <em>Listeria</em> STs and bacterial species. All ST9 isolates carried a premature stop codon (PMSC) in <em>inlA</em>. Two Lineage I-ST224 isolates were evolutionary linked to the outbreak strain FSCNU0110 in Korea in 2018, sharing an identical <em>llsX</em> PMSC in <em>Listeria</em> pathogenicity island (LIPI)-3. LIPI-4 was exclusively detected in ST87, a hypervirulent clone found in multiple provinces. Seven isolates from imported pork were ST3 and ST321, indicating potential international transmission via pork trade. All isolates possessed intrinsic antimicrobial resistance genes. The detection of persistent and hypervirulent clones in final pork products underscores the need for high-resolution genomic surveillance and strict hygiene interventions during meat processing and distribution for reducing the occurrence of listeriosis.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111515"},"PeriodicalIF":5.2,"publicationDate":"2025-11-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145464750","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-05DOI: 10.1016/j.ijfoodmicro.2025.111514
Christina Anna Stafyli , Evmorfia Athanasopoulou , Magda Tseperka , Dimitrios Skliros , Theofania Tsironi , Emmanouil Flemetakis
The global food industry faces significant challenges related to food spoilage, particularly in aquaculture, where pathogens like Vibrio species are major disease-causing agents. This study investigated the use of bacteriophage Athena1 as a biocontrol agent in biodegradable coatings for fish contaminated with Vibrio alginolyticus V1, evaluating its stability, lytic efficacy, and performance within biopolymer-based coatings.
Athena1 demonstrated stable lytic activity across various pH and temperature conditions. When directly applied to fish slices, the phage significantly inhibited V. alginolyticus V1 growth, confirming its effectiveness in complex matrices like fish flesh. Results coming from the application of Coating+Athena1 varied: chitosan exhibited strong inherent antimicrobial properties with limited added benefit from the phage, while methylcellulose managed to maintain phage stability and showed effective bacterial inhibition. Sodium alginate, however, displayed inconsistent phage activity, potentially due to interactions with other fish spoilage microbiota.
Overall, these findings suggest that Vibrio-infecting bacteriophages hold potential as biocontrol agents in active biodegradable coatings and films for fish products. Further research should focus on optimizing phage release and stability across biopolymer matrices to enhance practical applications in food preservation, with emphasis on selecting tailored bacteriophages for effective biocontrol.
{"title":"Integration of a marine bacteriophage into chitosan, sodium alginate and methylcellulose-based coatings to control microbial spoilage and Vibrio alginolyticus growth in fish","authors":"Christina Anna Stafyli , Evmorfia Athanasopoulou , Magda Tseperka , Dimitrios Skliros , Theofania Tsironi , Emmanouil Flemetakis","doi":"10.1016/j.ijfoodmicro.2025.111514","DOIUrl":"10.1016/j.ijfoodmicro.2025.111514","url":null,"abstract":"<div><div>The global food industry faces significant challenges related to food spoilage, particularly in aquaculture, where pathogens like <em>Vibrio</em> species are major disease-causing agents. This study investigated the use of bacteriophage Athena1 as a biocontrol agent in biodegradable coatings for fish contaminated with <em>Vibrio alginolyticus</em> V1, evaluating its stability, lytic efficacy, and performance within biopolymer-based coatings.</div><div>Athena1 demonstrated stable lytic activity across various pH and temperature conditions. When directly applied to fish slices, the phage significantly inhibited <em>V. alginolyticus</em> V1 growth, confirming its effectiveness in complex matrices like fish flesh. Results coming from the application of Coating+Athena1 varied: chitosan exhibited strong inherent antimicrobial properties with limited added benefit from the phage, while methylcellulose managed to maintain phage stability and showed effective bacterial inhibition. Sodium alginate, however, displayed inconsistent phage activity, potentially due to interactions with other fish spoilage microbiota.</div><div>Overall, these findings suggest that <em>Vibrio</em>-infecting bacteriophages hold potential as biocontrol agents in active biodegradable coatings and films for fish products. Further research should focus on optimizing phage release and stability across biopolymer matrices to enhance practical applications in food preservation, with emphasis on selecting tailored bacteriophages for effective biocontrol.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111514"},"PeriodicalIF":5.2,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145464747","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-05DOI: 10.1016/j.ijfoodmicro.2025.111510
Chunhui Deng , Qin Peng , Xia Lin , Yue Shu , Shengshuai Li , Yunlong Song , Hong Kong , Lei Liu , Ziwei Liang , Yu Rao
Sichuan paocai, a distinctive type of Chinese fermented vegetable, is highly favored by consumers for its unique flavor. Microbial metabolism plays a crucial role in the fermentation process and flavor development of paocai. This study explored the effects of the Quorum sensing (QS) molecular analog 4-hydroxy-5-methyl-3(2H)-furanone (MHF) on the spoilage microorganisms in Sichuan paocai, as well as the microbial diversity and flavor characteristics during fermentation. The results showed that MHF functioned as an AI-2 signaling molecule at a concentration of 100 μmol/L, inducing bioluminescence in Vibrio harveyi BB170. Additionally, MHF effectively inhibited biofilm formation of Klebsiella trevisanii, Providencia ewingii, Enterobacter cloacae, Pichia sp., and Candida tropicalis, while delaying pellicle formation. No significant differences were observed in the total bacterial counts, lactic acid bacterial (LAB) counts, or pH during fermentation with or without MHF. However, the addition of MHF significantly increased the relative abundance of Lactiplantibacillus while decreasing those of Enterobacter and Bacillus. Moreover, MHF supplementation effectively reduced nitrite and butyric acid production, while increasing the content of free amino acids (FAAs) such as aspartic acid (Asp) and glutamic acid (Glu), as well as volatile organic compounds (VOCs), including eucalyptol, linaloolmol and phenylethyl alcohol. Therefore, MHF can delay Sichuan paocai spoilage, increase the relative abundance of Lactiplantibacillus, and enhance Sichuan paocai flavor.
{"title":"Effect of quorum sensing signal molecular analog 4-hydroxy-5-methyl-3(2H)-furanone on the microbial diversity and flavor characteristics of Sichuan Paocai","authors":"Chunhui Deng , Qin Peng , Xia Lin , Yue Shu , Shengshuai Li , Yunlong Song , Hong Kong , Lei Liu , Ziwei Liang , Yu Rao","doi":"10.1016/j.ijfoodmicro.2025.111510","DOIUrl":"10.1016/j.ijfoodmicro.2025.111510","url":null,"abstract":"<div><div>Sichuan <em>paocai</em>, a distinctive type of Chinese fermented vegetable, is highly favored by consumers for its unique flavor. Microbial metabolism plays a crucial role in the fermentation process and flavor development of <em>paocai</em>. This study explored the effects of the Quorum sensing (QS) molecular analog 4-hydroxy-5-methyl-3(2H)-furanone (MHF) on the spoilage microorganisms in Sichuan <em>paocai</em>, as well as the microbial diversity and flavor characteristics during fermentation. The results showed that MHF functioned as an AI-2 signaling molecule at a concentration of 100 μmol/L, inducing bioluminescence in <em>Vibrio harveyi</em> BB170. Additionally, MHF effectively inhibited biofilm formation of <em>Klebsiella trevisanii</em>, <em>Providencia ewingii</em>, <em>Enterobacter cloacae</em>, <em>Pichia</em> sp., and <em>Candida tropicalis</em>, while delaying pellicle formation. No significant differences were observed in the total bacterial counts, lactic acid bacterial (LAB) counts, or pH during fermentation with or without MHF. However, the addition of MHF significantly increased the relative abundance of <em>Lactiplantibacillus</em> while decreasing those of <em>Enterobacter</em> and <em>Bacillus</em>. Moreover, MHF supplementation effectively reduced nitrite and butyric acid production, while increasing the content of free amino acids (FAAs) such as aspartic acid (Asp) and glutamic acid (Glu), as well as volatile organic compounds (VOCs), including eucalyptol, linaloolmol and phenylethyl alcohol. Therefore, MHF can delay Sichuan <em>paocai</em> spoilage, increase the relative abundance of <em>Lactiplantibacillus</em>, and enhance Sichuan <em>paocai</em> flavor.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111510"},"PeriodicalIF":5.2,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145464749","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2025-11-05DOI: 10.1016/j.ijfoodmicro.2025.111516
Montserrat Vila-Brugalla , Sasha M. Rivera-Sánchez , Artur X. Roig-Sagués , M. Manuela Hernández-Herrero
Mild sous-vide processing is increasingly applied to enhance the sensory and nutritional quality of ready-to-eat foods. However, its microbiological safety remains uncertain, as moderate temperatures may allow survival and recovery of Listeria monocytogenes. This study investigated the behaviour of L. monocytogenes in salmon and pork fillets cooked at 55 °C for 30, 60, or 90 min and subsequently stored at 4 °C or 8 °C for up to 30 days. Two strains, Scott A and CECT 4031, were tested individually and as a cocktail. Outcomes varied according to strain and matrix: complete inactivation occurred only for CECT 4031 in pork, while survival and recovery were consistently detected in other conditions. Slow heating rates (< 2 °C/min) were associated with higher apparent resistance, particularly for Scott A. Inactivation deviated from log-linearity and was best described by the Geeraerd log-linear + tail and Mafart Weibull models, with D-values ranging from 6.8 to 8.3 min. During storage, post-treatment growth occurred in most salmon samples and in pork inoculated with Scott A at 8 °C. Sublethally injured cells recovered, showing maximum growth rates up to 1.0 log CFU g/day and lag phases of 2–14 days. These findings confirm that mild sous-vide treatments at 55 °C do not guarantee complete inactivation of L. monocytogenes, highlighting the need for validation studies that combine lethality and recovery outcomes. Predictive models integrating non-linear inactivation and heterogeneity provide a robust framework for assessing safety in minimally processed foods.
{"title":"Predictive modelling of Listeria monocytogenes survival and recovery in salmon and pork subjected to sous vide cooking at 55 °C","authors":"Montserrat Vila-Brugalla , Sasha M. Rivera-Sánchez , Artur X. Roig-Sagués , M. Manuela Hernández-Herrero","doi":"10.1016/j.ijfoodmicro.2025.111516","DOIUrl":"10.1016/j.ijfoodmicro.2025.111516","url":null,"abstract":"<div><div>Mild sous-vide processing is increasingly applied to enhance the sensory and nutritional quality of ready-to-eat foods. However, its microbiological safety remains uncertain, as moderate temperatures may allow survival and recovery of <em>Listeria monocytogenes</em>. This study investigated the behaviour of L. <em>monocytogenes</em> in salmon and pork fillets cooked at 55 °C for 30, 60, or 90 min and subsequently stored at 4 °C or 8 °C for up to 30 days. Two strains, Scott A and CECT 4031, were tested individually and as a cocktail. Outcomes varied according to strain and matrix: complete inactivation occurred only for CECT 4031 in pork, while survival and recovery were consistently detected in other conditions. Slow heating rates (< 2 °C/min) were associated with higher apparent resistance, particularly for Scott A. Inactivation deviated from log-linearity and was best described by the Geeraerd log-linear + tail and Mafart Weibull models, with D-values ranging from 6.8 to 8.3 min. During storage, post-treatment growth occurred in most salmon samples and in pork inoculated with Scott A at 8 °C. Sublethally injured cells recovered, showing maximum growth rates up to 1.0 log CFU g/day and lag phases of 2–14 days. These findings confirm that mild sous-vide treatments at 55 °C do not guarantee complete inactivation of L. <em>monocytogenes,</em> highlighting the need for validation studies that combine lethality and recovery outcomes. Predictive models integrating non-linear inactivation and heterogeneity provide a robust framework for assessing safety in minimally processed foods.</div></div>","PeriodicalId":14095,"journal":{"name":"International journal of food microbiology","volume":"446 ","pages":"Article 111516"},"PeriodicalIF":5.2,"publicationDate":"2025-11-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145495560","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}