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Total chemical synthesis of a heterodimeric interchain bis-lactam-linked Peptide: application to an analogue of human insulin-like Peptide 3. 异二聚体间链双内酰胺连接肽的全化学合成:在人胰岛素样肽3类似物中的应用。
Pub Date : 2013-01-01 Epub Date: 2013-10-28 DOI: 10.1155/2013/504260
John Karas, Fazel Shabanpoor, Mohammed Akhter Hossain, James Gardiner, Frances Separovic, John D Wade, Denis B Scanlon

Nonreducible cystine isosteres represent important peptide design elements in that they can maintain a near-native tertiary conformation of the peptide while simultaneously extending the in vitro and in vivo half-life of the biomolecule. Examples of these cystine mimics include dicarba, diselenide, thioether, triazole, and lactam bridges. Each has unique physicochemical properties that impact upon the resulting peptide conformation. Each also requires specific conditions for its formation via chemical peptide synthesis protocols. While the preparation of peptides containing two lactam bonds within a peptide is technically possible and reported by others, to date there has been no report of the chemical synthesis of a heterodimeric peptide linked by two lactam bonds. To examine the feasibility of such an assembly, judicious use of a complementary combination of amine and acid protecting groups together with nonfragment-based, total stepwise solid phase peptide synthesis led to the successful preparation of an analogue of the model peptide, insulin-like peptide 3 (INSL3), in which both of the interchain disulfide bonds were replaced with a lactam bond. An analogue containing a single disulfide-substituted interchain lactam bond was also prepared. Both INSL3 analogues retained significant cognate RXFP2 receptor binding affinity.

不可还原的胱氨酸同位体是重要的肽设计元素,因为它们可以维持肽的接近天然的三级构象,同时延长生物分子的体外和体内半衰期。这些胱氨酸模拟物的例子包括敌敌畏、二硒醚、硫醚、三唑和内酰胺桥。每一种都有其独特的物理化学性质,影响到生成的肽构象。每一种都需要通过化学肽合成方案形成特定的条件。虽然在一个肽内制备含有两个内酰胺键的肽在技术上是可能的,并且有其他报道,但迄今为止还没有化学合成由两个内酰胺键连接的异二聚体肽的报道。为了检验这种组装的可行性,明智地使用胺和酸保护基团的互补组合以及非片段基的全逐步固相肽合成,成功地制备了模型肽的类似物胰岛素样肽3 (INSL3),其中两个链间二硫键都被内酰胺键取代。还制备了含有单二硫化物取代间链内酰胺键的类似物。两种INSL3类似物都保留了显著的同源RXFP2受体结合亲和力。
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引用次数: 12
Erratum to “Characterization of Selective Antibacterial Peptides by Polarity Index” 用极性指数表征选择性抗菌肽的勘误
Pub Date : 2012-12-24 DOI: 10.1155/2012/613053
Carlos Polanco, J. L. Samaniego, T. Buhse, F. G. Mosqueira, A. Negrón-Mendoza, S. Ramos-Bernal, J. Castañón-González
When I was using the Polarity-Index method a few days ago, I noticed differences in Table 3, as published. However, it should be as in Table 3. Table 1 Number of matches in a typical SCAAP sequence in each peptide database with single or multiple action on fungi, viruses, mammalian cells, Gram+/Gram− bacteria, cancer cells, insects, parasites, and sperms (see also Section 2.6) [7]. These changes do not affect neither the efficiency of the method nor any section of the paper. I also noted the difficulty to compare information on the same APD2 database (November 2011), as it changes weekly. Therefore I am sending a file to support that test, in case the journal has backup for additional information. Otherwise I will to keep this information for three years.
几天前,当我使用polar - index方法时,我注意到了表3(已发表)中的差异。但是,它应该如表3所示。表1在每个肽数据库中,对真菌、病毒、哺乳动物细胞、革兰氏+/革兰氏−细菌、癌细胞、昆虫、寄生虫和精子具有单一或多重作用的典型SCAAP序列的匹配数量(参见章节2.6)[7]。这些变化既不影响方法的效率,也不影响论文的任何部分。我还注意到比较同一APD2数据库(2011年11月)上的信息很困难,因为它每周都在变化。因此,我发送了一个文件来支持该测试,以防日志备份了额外的信息。否则我将保留此信息三年。
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引用次数: 37
Amyloid Beta Peptide slows down sensory-induced hippocampal oscillations. 淀粉样β肽会减缓感觉诱导的海马振荡
Pub Date : 2012-01-01 Epub Date: 2012-04-29 DOI: 10.1155/2012/236289
Fernando Peña-Ortega, Ramón Bernal-Pedraza

Alzheimer's disease (AD) progresses with a deterioration of hippocampal function that is likely induced by amyloid beta (Aβ) oligomers. Hippocampal function is strongly dependent on theta rhythm, and disruptions in this rhythm have been related to the reduction of cognitive performance in AD. Accordingly, both AD patients and AD-transgenic mice show an increase in theta rhythm at rest but a reduction in cognitive-induced theta rhythm. We have previously found that monomers of the short sequence of Aβ (peptide 25-35) reduce sensory-induced theta oscillations. However, considering on the one hand that different Aβ sequences differentially affect hippocampal oscillations and on the other hand that Aβ oligomers seem to be responsible for the cognitive decline observed in AD, here we aimed to explore the effect of Aβ oligomers on sensory-induced theta rhythm. Our results show that intracisternal injection of Aβ1-42 oligomers, which has no significant effect on spontaneous hippocampal activity, disrupts the induction of theta rhythm upon sensory stimulation. Instead of increasing the power in the theta band, the hippocampus of Aβ-treated animals responds to sensory stimulation (tail pinch) with an increase in lower frequencies. These findings demonstrate that Aβ alters induced theta rhythm, providing an in vivo model to test for therapeutic approaches to overcome Aβ-induced hippocampal and cognitive dysfunctions.

阿尔茨海默病(AD)会导致海马功能退化,而淀粉样β(Aβ)寡聚体可能是诱因。海马功能在很大程度上依赖于θ节律,这种节律的紊乱与AD患者认知能力的下降有关。因此,注意力缺失症患者和注意力缺失症转基因小鼠在静息状态下的θ节律都会增加,但认知诱导的θ节律却会减少。我们以前曾发现,Aβ短序列(肽 25-35)的单体可减少感觉诱导的θ振荡。然而,考虑到一方面不同的 Aβ 序列会对海马振荡产生不同的影响,另一方面 Aβ 寡聚体似乎是导致注意力缺失症患者认知能力下降的原因,我们在此旨在探索 Aβ 寡聚体对感觉诱导的θ节律的影响。我们的研究结果表明,胸腔内注射 Aβ1-42 寡聚体对海马的自发活动没有显著影响,但却会破坏感觉刺激诱导的θ节律。经 Aβ 处理的动物的海马对感觉刺激(捏尾巴)的反应不是增加θ波段的功率,而是增加较低频率的功率。这些研究结果表明,Aβ改变了诱导的θ节律,为测试治疗方法提供了一个体内模型,以克服Aβ诱导的海马和认知功能障碍。
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引用次数: 0
Effects of endurance and resistance training on calcitonin gene-related Peptide and acetylcholine receptor at slow and fast twitch skeletal muscles and sciatic nerve in male wistar rats. 耐力和阻力训练对雄性wistar大鼠慢、快抽动骨骼肌和坐骨神经降钙素基因相关肽和乙酰胆碱受体的影响。
Pub Date : 2012-01-01 Epub Date: 2012-06-18 DOI: 10.1155/2012/962651
Abdolhossein Parnow, Reza Gharakhanlou, Zeinab Gorginkaraji, Somayeh Rajabi, Rasoul Eslami, Mahdi Hedayati, Reza Mahdian

The aim of this study was to investigate effects of endurance and resistance training (ET and RT) on CGRP and AChRs at slow and fast twitch muscles and sciatic nerve in rats. Twenty-five male rats were randomly assigned into three groups including sedentary (SED), endurance training (ET), and resistance training (RT). Animals of ET exercised for 12 weeks, five times/week, and 60 min/day at 30 m/min. Animals of RT were housed in metal cage with 2 m high wire-mesh tower, with water bottles set at the top. 48 h after the last session of training protocol, animals were anaesthetized. The right sciatic nerves were removed; then, Soleus (SOL) and Tibialis anterior (TA) muscles were excised and immediately snap frozen in liquid nitrogen. All frozen tissues were stored at -80°C. Results showed that, after both ET and RT, CGRP content as well as AChR content of SOL and TA muscles significantly increased. But there was no significant difference among groups at sciatic nerve' CGRP content. In conclusion, data demonstrate that ET and RT lead to changes of CGRP and AChR content of ST and FT muscles. The changes indicate to the importance of neuromuscular activity.

本研究的目的是探讨耐力和阻力训练(ET和RT)对大鼠慢、快肌收缩肌和坐骨神经CGRP和achr的影响。25只雄性大鼠随机分为三组,包括久坐(SED)、耐力训练(ET)和阻力训练(RT)。ET组连续运动12周,5次/周,以30 m/min的速度运动60 min/天。实验动物被安置在金属笼中,笼上有2米高的铁丝网塔,顶部设有水瓶。最后一次训练方案48 h后,对动物进行麻醉。切除右侧坐骨神经;然后,切除比目鱼肌(SOL)和胫骨前肌(TA),立即在液氮中冷冻。所有冷冻组织保存在-80°C。结果显示,在ET和RT后,SOL和TA肌肉的CGRP含量和AChR含量均显著升高。但各组间坐骨神经CGRP含量差异无统计学意义。综上所述,数据表明ET和RT导致ST和FT肌肉CGRP和AChR含量的变化。这些变化表明了神经肌肉活动的重要性。
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引用次数: 15
Molecular Cloning and Sequence Analysis of the cDNAs Encoding Toxin-Like Peptides from the Venom Glands of Tarantula Grammostola rosea. 红狼蛛毒腺毒素样肽编码cdna的克隆与序列分析。
Pub Date : 2012-01-01 Epub Date: 2012-02-29 DOI: 10.1155/2012/731293
Tadashi Kimura, Seigo Ono, Tai Kubo

Tarantula venom glands produce a large variety of bioactive peptides. Here we present the identification of venom components obtained by sequencing clones isolated from a cDNA library prepared from the venom glands of the Chilean common tarantula, Grammostola rosea. The cDNA sequences of about 1500 clones out of 4000 clones were analyzed after selection using several criteria. Forty-eight novel toxin-like peptides (GTx1 to GTx7, and GTx-TCTP and GTx-CRISP) were predicted from the nucleotide sequences. Among these peptides, twenty-four toxins are ICK motif peptides, eleven peptides are MIT1-like peptides, and seven are ESTX-like peptides. Peptides similar to JZTX-64, aptotoxin, CRISP, or TCTP are also obtained. GTx3 series possess a cysteine framework that is conserved among vertebrate MIT1, Bv8, prokineticins, and invertebrate astakines. GTx-CRISP is the first CRISP-like protein identified from the arthropod venom. Real-time PCR revealed that the transcripts for TCTP-like peptide are expressed in both the pereopodal muscle and the venom gland. Furthermore, a unique peptide GTx7-1, whose signal and prepro sequences are essentially identical to those of HaTx1, was obtained.

狼蛛的毒腺能产生多种生物活性肽。本文通过对智利常见狼蛛(Grammostola rosea)毒腺cDNA文库中分离的克隆进行测序,鉴定了其毒液成分。对4000个无性系中约1500个无性系的cDNA序列进行了分析。从核苷酸序列中预测了48个新的毒素样肽(GTx1 ~ GTx7、GTx-TCTP和GTx-CRISP)。其中24种毒素为ICK基序肽,11种为mit1样肽,7种为estx样肽。获得了类似于JZTX-64、凋亡毒素、CRISP或TCTP的多肽。GTx3系列具有在脊椎动物MIT1、Bv8、prokineticins和无脊椎动物astakines中保守的半胱氨酸框架。GTx-CRISP是第一个从节肢动物毒液中鉴定出的crisp样蛋白。实时荧光定量PCR结果显示,tctp样肽转录本在足底肌和蛇毒腺均有表达。此外,还获得了一个独特的肽GTx7-1,其信号序列和前置序列与HaTx1基本相同。
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引用次数: 25
Identification of histoplasma-specific peptides in human urine. 人尿中组织浆特异性肽的鉴定。
Pub Date : 2012-01-01 Epub Date: 2012-03-26 DOI: 10.1155/2012/621329
David K Crockett, Mark M Kushnir, Joann L Cloud, Edward R Ashwood, Alan L Rockwood

Histoplasmosis is a severe dimorphic fungus infection, which is often difficult to diagnose due to similarity in symptoms to other diseases and lack of specific diagnostic tests. Urine samples from histoplasma-antigen-positive patients and appropriate controls were prepared using various sample preparation strategies including immunoenrichment, ultrafiltration, high-abundant protein depletion, deglycosylation, reverse-phase fractions, and digest using various enzymes. Samples were then analyzed by nanospray tandem mass spectrometry. Accurate mass TOF scans underwent molecular feature extraction and statistical analysis for unique disease makers, and acquired MS/MS data were searched against known human and histoplasma proteins. In human urine, some 52 peptides from 37 Histoplasma proteins were identified with high confidence. This is the first report of identification of a large number of Histoplasma-specific peptides from immunoassay-positive patient samples using tandem mass spectrometry and bioinformatics techniques. These findings may lead to novel diagnostic markers for histoplasmosis in human urine.

组织胞浆菌病是一种严重的二型真菌感染,由于症状与其他疾病相似,缺乏专门的诊断方法,往往难以诊断。组织血浆抗原阳性患者和适当对照组的尿液样本采用多种样品制备策略,包括免疫富集、超滤、高丰蛋白耗尽、去糖基化、反相馏分和各种酶消化。然后用纳米喷雾串联质谱法对样品进行分析。精确的质量TOF扫描对独特的疾病制造者进行分子特征提取和统计分析,并根据已知的人蛋白和组织浆蛋白检索获得的MS/MS数据。在人尿中,37种组织浆蛋白中的52种多肽被高可信度地鉴定出来。这是首次使用串联质谱法和生物信息学技术从免疫测定阳性患者样本中鉴定出大量组织浆特异性肽的报告。这些发现可能会导致新的诊断标记组织浆菌病在人类尿液。
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引用次数: 5
Pan-PPAR Agonist, Bezafibrate, Restores Angiogenesis in Hindlimb Ischemia in Normal and Diabetic Rats. 泛ppar激动剂贝扎布特恢复正常和糖尿病大鼠后肢缺血血管生成。
Pub Date : 2012-01-01 Epub Date: 2012-06-03 DOI: 10.1155/2012/637212
M Khazaei, E Salehi, B Rashidi

Introduction. The aim of this study was to investigate the effect of bezafibrate as a pan-PPAR agonist on angiogenesis and serum nitrite, the main metabolite of nitric oxide (NO), vascular endothelial growth factor (VEGF) and VEGF receptor-2 (VEGFR-2) concentrations in hindlimb ischemia model of normal and type I diabetic rats. Methods. 28 male Wistar rats were divided into control and diabetic groups. Then, all rats underwent unilateral hindlimb ischemia. After recovery, they were randomly assigned to one of the following experimental groups: (1) control; (2) control + bezafibrate (400 mg/kg/day); (3) diabetic; (4) diabetic + beztafibrate. After three weeks, blood samples were taken and capillary density was evaluated in the gasterocnemius muscle of ischemic limb. Results. Bezafibrate increased capillary density and capillary/fiber ratio in ischemic leg of diabetic and control rats (P < 0.05). Serum VEGF and VEGFR-2 concentrations did not alter after bezafibrate administration, however, serum nitrite concentration was significantly higher in bezafibrate-treated groups than non-treated groups (P < 0.05). Discussion. It seems that bezafibrate, as a pan PPAR agonist, restores angiogenesis in hindlimb ischemic diabetic animals and is useful for prevention and/or treatment of peripheral artery disease in diabetic subjects.

介绍。本研究旨在探讨贝扎布特作为泛ppar受体兴奋剂对正常和1型糖尿病大鼠后肢缺血模型血管生成和血清亚硝酸盐、一氧化氮(NO)主要代谢物、血管内皮生长因子(VEGF)和VEGF受体-2 (VEGFR-2)浓度的影响。方法:28只雄性Wistar大鼠分为正常对照组和糖尿病组。然后,所有大鼠进行单侧后肢缺血。恢复后,随机分为以下实验组:(1)对照组;(2)对照+贝扎菲特(400 mg/kg/天);(3)糖尿病;(4)糖尿病+ beztafbrate。3周后,取血测定缺血肢体腹大肌毛细血管密度。结果。贝扎布特增加了糖尿病大鼠和对照组缺血腿部毛细血管密度和毛细血管纤维比(P < 0.05)。贝扎贝特给药后血清VEGF和VEGFR-2浓度无明显变化,但亚硝酸盐浓度显著高于未给药组(P < 0.05)。讨论。贝扎布特作为一种泛PPAR激动剂,似乎可以恢复后肢缺血性糖尿病动物的血管生成,并有助于预防和/或治疗糖尿病患者的外周动脉疾病。
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引用次数: 12
A meta-analysis of the therapeutic effects of glucagon-like Peptide-1 agonist in heart failure. 胰高血糖素样肽-1激动剂治疗心力衰竭疗效的荟萃分析。
Pub Date : 2012-01-01 Epub Date: 2012-07-01 DOI: 10.1155/2012/249827
Mohammed Munaf, Pierpaolo Pellicori, Victoria Allgar, Kenneth Wong

We conducted a meta-analysis of the existing literature of the therapeutic effects of using GLP-1 agonists to improve the metabolism of the failing heart. Animal studies showed significant improvement in markers of cardiac function, such as left ventricular ejection fraction (LVEF), with regular GLP-1 agonist infusions. In clinical trials, the potential effects of GLP-1 agonists in improving cardiac function were modest: LVEF improved by 4.4% compared to placebo (95% C.I 1.36-7.44, P = 0.005). However, BNP levels were not significantly altered by GLP-1 agonists in heart failure. In two trials, a modest increase in heart rate by up to 7 beats per minute was noted, but meta-analysis demonstrated this was not significant statistically. The small number of studies plus variation in the concentration and length of the regime between the trials would limit our conclusions, even though statistically, heterogeneity chi-squared tests did not reveal any significant heterogeneity in the endpoints tested. Moreover, studies in non-diabetics with heart failure yielded conflicting results. In conclusion, the use of GLP-1 agonists has at best a modest effect on ejection fraction improvement in heart failure, but there was no significant improvement in BNP levels in the meta-analysis.

我们对使用GLP-1激动剂改善衰竭心脏代谢的现有文献进行了荟萃分析。动物研究显示,定期输注GLP-1激动剂可显著改善心功能指标,如左室射血分数(LVEF)。在临床试验中,GLP-1激动剂在改善心功能方面的潜在作用是温和的:与安慰剂相比,LVEF改善了4.4% (95% ci 1.36-7.44, P = 0.005)。然而,在心力衰竭时,GLP-1激动剂并没有显著改变BNP水平。在两项试验中,注意到心率每分钟增加7次,但荟萃分析表明这在统计学上并不显著。研究的数量少,加上试验之间的浓度和时间长度的差异,会限制我们的结论,即使在统计学上,异质性卡方检验并未显示测试终点的任何显著异质性。此外,对非糖尿病心力衰竭患者的研究得出了相互矛盾的结果。总之,使用GLP-1激动剂对心力衰竭患者的射血分数改善效果最好,但meta分析显示BNP水平没有显著改善。
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引用次数: 28
Large Scale Solid Phase Synthesis of Peptide Drugs: Use of Commercial Anion Exchange Resin as Quenching Agent for Removal of Iodine during Disulphide Bond Formation. 多肽药物的大规模固相合成:使用商用阴离子交换树脂作为淬火剂去除二硫键形成过程中的碘。
Pub Date : 2012-01-01 Epub Date: 2012-10-15 DOI: 10.1155/2012/323907
K M Bhaskara Reddy, Y Bharathi Kumari, Dokka Mallikharjunasarma, Kamana Bulliraju, Vanjivaka Sreelatha, Kuppanna Ananda

The S-acetamidomethyl (Acm) or trityl (Trt) protecting groups are widely used in the chemical synthesis of peptides that contain one or more disulfide bonds. Treatment of peptides containing S-Acm protecting group with iodine results in simultaneous removal of the sulfhydryl protecting group and disulfide formation. However, the excess iodine needs to be quenched or adsorbed as quickly as possible after completion of the disulfide bond formation in order to minimize side reactions that are often associated with the iodination step. We report here a simple method for simultaneous quenching and removal of iodine and isolation of disulphide bridge peptides. The use of excess inexpensive anion exchange resin to the oxidized peptide from the aqueous acetic acid/methanol solution affords quantitative removal of iodine and other color impurities. This improves the resin life time of expensive chromatography media that is used in preparative HPLC column during the purification of peptide using preparative HPLC. Further, it is very useful for the conversion of TFA salt to acetate in situ. It was successfully applied commercially, to the large scale synthesis of various peptides including Desmopressin, Oxytocin, and Octreotide. This new approach offers significant advantages such as more simple utility, minimal side reactions, large scale synthesis of peptide drugs, and greater cost effectiveness.

S-acetamidhometyl (Acm) 或 trityl (Trt) 保护基团广泛用于含有一个或多个二硫键的肽的化学合成。用碘处理含有 S-Acm 保护基的肽会同时去除巯基保护基和形成二硫化物。然而,在二硫键形成完成后,需要尽快淬灭或吸附过量的碘,以尽量减少碘化步骤中经常出现的副反应。我们在此报告一种同时淬灭和去除碘并分离二硫桥肽的简单方法。使用过量的廉价阴离子交换树脂从醋酸/甲醇水溶液中将氧化肽定量去除碘和其他颜色杂质。这就延长了制备型高效液相色谱法纯化多肽过程中昂贵的色谱介质的使用寿命。此外,它还非常适用于将反式脂肪酸盐原位转化为醋酸盐。它已成功应用于商业化大规模合成各种肽,包括去氨加压素、催产素和奥曲肽。这种新方法具有显著的优势,如实用性更简单、副反应最小、可大规模合成多肽药物以及成本效益更高。
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引用次数: 0
Antimicrobial peptides as infection imaging agents: better than radiolabeled antibiotics. 抗菌肽作为感染显像剂:优于放射性标记抗生素。
Pub Date : 2012-01-01 Epub Date: 2012-05-17 DOI: 10.1155/2012/965238
Muammad Saeed Akhtar, Muhammad Babar Imran, Muhammad Afzal Nadeem, Abubaker Shahid

Nuclear medicine imaging techniques offer whole body imaging for localization of number and site of infective foci inspite of limitation of spatial resolution. The innate human immune system contains a large member of important elements including antimicrobial peptides to combat any form of infection. However, development of antibiotics against bacteria progressed rapidly and gained popularity over antimicrobial peptides but even powerful antimicrobials failed to reduce morbidity and mortality due to emergence of mutant strains of bacteria resulting in antimicrobial resistance. Differentiation between infection and inflammation using radiolabeled compounds with nuclear medicine techniques has always been a dilemma which is still to be resolved. Starting from nonspecific tracers to specific radiolabeled tracers, the question is still unanswered. Specific radiolabeled tracers included antibiotics and antimicrobial peptides which bind directly to the bacteria for efficient localization with advanced nuclear medicine equipments. However, there are merits and demerits attributed to each. In the current paper, radiolabeled antibiotics and radiolabeled peptides for infection localization have been discussed starting with the background of primitive nonspecific tracers. Radiolabeled antimicrobial peptides have certain merits compared with labeled antibiotics which make them superior agents for localization of infective focus.

核医学成像技术虽然在空间分辨率上有一定的局限性,但仍能提供全身成像技术来定位感染病灶的数量和位置。人类先天免疫系统包含大量重要元素,包括抗微生物肽,以对抗任何形式的感染。然而,抗细菌抗生素的开发进展迅速,并在抗菌肽中得到普及,但由于细菌突变株的出现导致抗菌药物耐药性,即使是强大的抗菌药物也未能降低发病率和死亡率。利用放射性标记化合物与核医学技术鉴别感染与炎症一直是一个有待解决的难题。从非特异性示踪剂到特异性放射性标记示踪剂,这个问题仍然没有答案。特异的放射性示踪剂包括抗生素和抗菌肽,它们直接与细菌结合,利用先进的核医学设备进行高效定位。然而,它们各有优缺点。本文从原始的非特异性示踪剂的背景出发,讨论了用于感染定位的放射性标记抗生素和放射性标记肽。与标记抗生素相比,放射性标记抗菌肽具有一定的优点,是定位感染病灶的首选药物。
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引用次数: 49
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International Journal of Peptides
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