Pub Date : 2012-01-01Epub Date: 2012-10-18DOI: 10.1155/2012/452524
Suvi T Ruohonen, Laura H Vähätalo, Eriika Savontaus
Neuropeptide Y (NPY) is a neurotransmitter associated with feeding and obesity. We have constructed an NPY transgenic mouse model (OE-NPY(DBH) mouse), where targeted overexpression leads to increased levels of NPY in noradrenergic and adrenergic neurons. We previously showed that these mice become obese on a normal chow. Now we aimed to study the effect of a Western-type diet in OE-NPY(DBH) and wildtype (WT) mice, and to compare the genotype differences in the development of obesity, insulin resistance, and diabetes. Weight gain, glucose, and insulin tolerance tests, fasted plasma insulin, and cholesterol levels were assayed. We found that female OE-NPY(DBH) mice gained significantly more weight without hyperphagia or decreased activity, and showed larger white and brown fat depots with no difference in UCP-1 levels. They also displayed impaired glucose tolerance and decreased insulin sensitivity. OE-NPY(DBH) and WT males gained weight robustly, but no difference in the degree of adiposity was observed. However, 40% of OE-NPY(DBH) but none of the WT males developed hyperglycaemia while on the diet. The present study shows that female OE-NPY(DBH) mice were not protected from the obesogenic effect of the diet suggesting that increased NPY release may predispose females to a greater risk of weight gain under high caloric conditions.
{"title":"Diet-induced obesity in mice overexpressing neuropeptide y in noradrenergic neurons.","authors":"Suvi T Ruohonen, Laura H Vähätalo, Eriika Savontaus","doi":"10.1155/2012/452524","DOIUrl":"https://doi.org/10.1155/2012/452524","url":null,"abstract":"<p><p>Neuropeptide Y (NPY) is a neurotransmitter associated with feeding and obesity. We have constructed an NPY transgenic mouse model (OE-NPY(DBH) mouse), where targeted overexpression leads to increased levels of NPY in noradrenergic and adrenergic neurons. We previously showed that these mice become obese on a normal chow. Now we aimed to study the effect of a Western-type diet in OE-NPY(DBH) and wildtype (WT) mice, and to compare the genotype differences in the development of obesity, insulin resistance, and diabetes. Weight gain, glucose, and insulin tolerance tests, fasted plasma insulin, and cholesterol levels were assayed. We found that female OE-NPY(DBH) mice gained significantly more weight without hyperphagia or decreased activity, and showed larger white and brown fat depots with no difference in UCP-1 levels. They also displayed impaired glucose tolerance and decreased insulin sensitivity. OE-NPY(DBH) and WT males gained weight robustly, but no difference in the degree of adiposity was observed. However, 40% of OE-NPY(DBH) but none of the WT males developed hyperglycaemia while on the diet. The present study shows that female OE-NPY(DBH) mice were not protected from the obesogenic effect of the diet suggesting that increased NPY release may predispose females to a greater risk of weight gain under high caloric conditions.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"452524"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/452524","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31022290","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-02-20DOI: 10.1155/2012/875910
Bruce D Uhal, My-Trang T Dang, Xiaopeng Li, Amal Abdul-Hafez
An established body of literature supports the hypothesis that activation of a local tissue angiotensin (ANG) system in the extravascular tissue compartment of the lungs is required for lung fibrogenesis. Transcriptional activation of the angiotensinogen (AGT) gene is believed to be a critical and necessary step in this activation. This paper summarizes the data in support of this theory and discusses transcriptional regulation of AGT, with an emphasis on lung AGT synthesis as a determinant of fibrosis severity. Genetic data linking AGT polymorphisms to the severity of disease in Idiopathic Pulmonary Fibrosis are also discussed.
{"title":"Angiotensinogen gene transcription in pulmonary fibrosis.","authors":"Bruce D Uhal, My-Trang T Dang, Xiaopeng Li, Amal Abdul-Hafez","doi":"10.1155/2012/875910","DOIUrl":"https://doi.org/10.1155/2012/875910","url":null,"abstract":"<p><p>An established body of literature supports the hypothesis that activation of a local tissue angiotensin (ANG) system in the extravascular tissue compartment of the lungs is required for lung fibrogenesis. Transcriptional activation of the angiotensinogen (AGT) gene is believed to be a critical and necessary step in this activation. This paper summarizes the data in support of this theory and discusses transcriptional regulation of AGT, with an emphasis on lung AGT synthesis as a determinant of fibrosis severity. Genetic data linking AGT polymorphisms to the severity of disease in Idiopathic Pulmonary Fibrosis are also discussed.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"875910"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/875910","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30573949","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-02-08DOI: 10.1155/2012/287457
Diana R Engineer, Jose M Garcia
Leptin is a product of the obese (OB) gene secreted by adipocytes in proportion to fat mass. It decreases food intake and increases energy expenditure by affecting the balance between orexigenic and anorexigenic hypothalamic pathways. Low leptin levels are responsible for the compensatory increase in appetite and body weight and decreased energy expenditure (EE) following caloric deprivation. The anorexia-cachexia syndrome is a complication of many chronic conditions including cancer, chronic obstructive pulmonary disease, congestive heart failure, chronic kidney disease, and aging, where the decrease in body weight and food intake is not followed by a compensatory increase in appetite or decreased EE. Crosstalk between leptin and inflammatory signaling known to be activated in these conditions may be responsible for this paradox. This manuscript will review the evidence and potential mechanisms mediating changes in the leptin pathway in the setting of anorexia and cachexia associated with chronic diseases.
{"title":"Leptin in anorexia and cachexia syndrome.","authors":"Diana R Engineer, Jose M Garcia","doi":"10.1155/2012/287457","DOIUrl":"10.1155/2012/287457","url":null,"abstract":"<p><p>Leptin is a product of the obese (OB) gene secreted by adipocytes in proportion to fat mass. It decreases food intake and increases energy expenditure by affecting the balance between orexigenic and anorexigenic hypothalamic pathways. Low leptin levels are responsible for the compensatory increase in appetite and body weight and decreased energy expenditure (EE) following caloric deprivation. The anorexia-cachexia syndrome is a complication of many chronic conditions including cancer, chronic obstructive pulmonary disease, congestive heart failure, chronic kidney disease, and aging, where the decrease in body weight and food intake is not followed by a compensatory increase in appetite or decreased EE. Crosstalk between leptin and inflammatory signaling known to be activated in these conditions may be responsible for this paradox. This manuscript will review the evidence and potential mechanisms mediating changes in the leptin pathway in the setting of anorexia and cachexia associated with chronic diseases.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":" ","pages":"287457"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3303568/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40169867","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-01-29DOI: 10.1155/2012/349427
Shawn Keogan, Shendra Passic, Fred C Krebs
Cell-penetrating peptides (CPP), which are short peptides that are capable of crossing the plasma membrane of a living cell, are under development as delivery vehicles for therapeutic agents that cannot themselves enter the cell. One well-studied CPP is the 10-amino acid peptide derived from the human immunodeficiency virus type 1 (HIV-1) Tat protein. In experiments to test the hypothesis that multiple cationic amino acids within Tat peptide confer antiviral activity against HIV-1, introduction of Tat peptide resulted in concentration-dependent inhibition of HIV-1 IIIB infection. Using Tat peptide variants containing arginine substitutions for two nonionic residues and two lysine residues, HIV-1 inhibition experiments demonstrated a direct relationship between cationic charge and antiviral potency. These studies of Tat peptide as an antiviral agent raise new questions about the role of Tat in HIV-1 replication and provide a starting point for the development of CPPs as novel HIV-1 inhibitors.
{"title":"Infection by CXCR4-Tropic Human Immunodeficiency Virus Type 1 Is Inhibited by the Cationic Cell-Penetrating Peptide Derived from HIV-1 Tat.","authors":"Shawn Keogan, Shendra Passic, Fred C Krebs","doi":"10.1155/2012/349427","DOIUrl":"https://doi.org/10.1155/2012/349427","url":null,"abstract":"<p><p>Cell-penetrating peptides (CPP), which are short peptides that are capable of crossing the plasma membrane of a living cell, are under development as delivery vehicles for therapeutic agents that cannot themselves enter the cell. One well-studied CPP is the 10-amino acid peptide derived from the human immunodeficiency virus type 1 (HIV-1) Tat protein. In experiments to test the hypothesis that multiple cationic amino acids within Tat peptide confer antiviral activity against HIV-1, introduction of Tat peptide resulted in concentration-dependent inhibition of HIV-1 IIIB infection. Using Tat peptide variants containing arginine substitutions for two nonionic residues and two lysine residues, HIV-1 inhibition experiments demonstrated a direct relationship between cationic charge and antiviral potency. These studies of Tat peptide as an antiviral agent raise new questions about the role of Tat in HIV-1 replication and provide a starting point for the development of CPPs as novel HIV-1 inhibitors.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"349427"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/349427","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30447679","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-08-09DOI: 10.1155/2012/757838
Mirian A F Hayashi, Frédéric Ducancel, Katsuhiro Konno
Natural peptides are central and crucial in many physiological processes playing either direct or indirect roles. Peptides are short linear chains of up to fifty amino acid residues, stabilized or not by disulphide bonds. They occur naturally in all living beings and exert highly specific biological activities, whose specificity is mainly based on and dependent on their primary sequence and, ultimately, to their conformational structure. The primary function of most peptides is the cell signalling role aiming to translate and deliver the biochemical “message” that triggers structural, molecular, cellular, and eventually biological effects. Thus, peptides can play roles as agonists, antagonists, modulators, mediators, hormones, effectors, cofactors, activators, stimulators, and so on. Also, many peptides can act directly as enzyme inhibitors or as antimicrobial compounds with possible activity on biological membranes, although with no necessary membrane lipid bilayer permeabilisation ability, acting by interfering with metabolism and targeting cytoplasmic components. They are also potentially antigenic compounds and several other peptides are used as pathological biomarkers, since they can be easily and specifically detected and quantified in various biological fluids. Based on the huge variety of mode of actions and physiological/pathological roles played by the peptides, in general, their structural and functional relationship has been widely studied by scientific researchers. Their functional roles, their reduced size, their low immunogenicity, their stability, in addition to the recent development of powerful strategies for chemical synthesis and/or recombinant expression, have given to the peptides the status of the most promising family of compounds with potential application for human diagnosis and therapy. Furthermore, their scaffold can been engineered to design compounds with modified biochemical, functional, or biophysical properties, allowing their labelling for in vivo imaging and vectorization applications, or also to functionalize nanoparticles. This special issue aims to gather a recent set of six original articles that mainly further emphasizes the molecular diversity and the variety of mode of action of natural peptides. Thus, C. Kairane and colleagues, from Estonia (Faculty of Medicine of University of Tartu), have examined the influence of the replacement of γ-Glu moiety to α-Glu in two gluthatione- (GSH-) related tetrapeptides UPF1 (Tyr (Me)-γ-Glu-Cys-Gly) and UPF17 (Tyr (Me)-α-Glu-Cys-Gly) in the antioxidative defense system in a human erythroleukemia K562 cell line. By monitoring the effects in these K562 cells via measurements of the cytosolic superoxide dismutase CuZnSOD activity and variations of intracellular GSH levels, followed by addressing the question of the stability of these two peptides against the action of the γ-glutamyltranspeptidase (GGT), allowed to the authors to open promising perspectives for
{"title":"Natural Peptides with Potential Applications in Drug Development, Diagnosis, and/or Biotechnology.","authors":"Mirian A F Hayashi, Frédéric Ducancel, Katsuhiro Konno","doi":"10.1155/2012/757838","DOIUrl":"https://doi.org/10.1155/2012/757838","url":null,"abstract":"Natural peptides are central and crucial in many physiological processes playing either direct or indirect roles. Peptides are short linear chains of up to fifty amino acid residues, stabilized or not by disulphide bonds. They occur naturally in all living beings and exert highly specific biological activities, whose specificity is mainly based on and dependent on their primary sequence and, ultimately, to their conformational structure. The primary function of most peptides is the cell signalling role aiming to translate and deliver the biochemical “message” that triggers structural, molecular, cellular, and eventually biological effects. Thus, peptides can play roles as agonists, antagonists, modulators, mediators, hormones, effectors, cofactors, activators, stimulators, and so on. \u0000 \u0000Also, many peptides can act directly as enzyme inhibitors or as antimicrobial compounds with possible activity on biological membranes, although with no necessary membrane lipid bilayer permeabilisation ability, acting by interfering with metabolism and targeting cytoplasmic components. They are also potentially antigenic compounds and several other peptides are used as pathological biomarkers, since they can be easily and specifically detected and quantified in various biological fluids. \u0000 \u0000Based on the huge variety of mode of actions and physiological/pathological roles played by the peptides, in general, their structural and functional relationship has been widely studied by scientific researchers. Their functional roles, their reduced size, their low immunogenicity, their stability, in addition to the recent development of powerful strategies for chemical synthesis and/or recombinant expression, have given to the peptides the status of the most promising family of compounds with potential application for human diagnosis and therapy. Furthermore, their scaffold can been engineered to design compounds with modified biochemical, functional, or biophysical properties, allowing their labelling for in vivo imaging and vectorization applications, or also to functionalize nanoparticles. \u0000 \u0000This special issue aims to gather a recent set of six original articles that mainly further emphasizes the molecular diversity and the variety of mode of action of natural peptides. \u0000 \u0000Thus, C. Kairane and colleagues, from Estonia (Faculty of Medicine of University of Tartu), have examined the influence of the replacement of γ-Glu moiety to α-Glu in two gluthatione- (GSH-) related tetrapeptides UPF1 (Tyr (Me)-γ-Glu-Cys-Gly) and UPF17 (Tyr (Me)-α-Glu-Cys-Gly) in the antioxidative defense system in a human erythroleukemia K562 cell line. By monitoring the effects in these K562 cells via measurements of the cytosolic superoxide dismutase CuZnSOD activity and variations of intracellular GSH levels, followed by addressing the question of the stability of these two peptides against the action of the γ-glutamyltranspeptidase (GGT), allowed to the authors to open promising perspectives for ","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"757838"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/757838","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30862153","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-05-07DOI: 10.1155/2012/781785
Larysa B Bondarenko, Valentina M Kovalenko
Introduction. Current therapeutic regimens with first-line antitubercular agents are associated to a high rate of adverse effects which could cause pronounced changes in collagen's contents and structure. Investigation of these changes is very important for optimization of antitubercular therapy and minimization of treatment-caused harm. The aim of present paper was to investigate potential effect of pyrazinamide on male rats' cartilage type II collagen amino acid composition. Materials and Methods. Wistar albino male rats (160-200 g b.w.) were divided into three groups: I-received pyrazinamide per os at a dose of 1000 mg/kg b.w./day; II-at a dose of 2000 mg/kg b.w./day, in both groups it was given for 60 days; III-control. After 60 days of the experiment, rats of the experimental (groups I and II) and control groups were sacrificed and the amino acids contents of male rat cartilage type II collagens were determined using amino acid analyzer. Results and Discussion. The study of pyrazinamide effects (administered in different doses) on rat cartilage type II collagen amino acid contents demonstrated presence of dose-dependent pyrazinamide-mediated quantitative and qualitative changes in these rat extracellular matrix proteins in comparison with control.
介绍。目前一线抗结核药物的治疗方案与高不良反应率相关,这可能导致胶原蛋白含量和结构的显著变化。研究这些变化对优化抗结核治疗和减少治疗引起的危害具有重要意义。本文旨在探讨吡嗪酰胺对雄性大鼠软骨II型胶原氨基酸组成的潜在影响。材料与方法。Wistar白化雄性大鼠(160 ~ 200 g b.w.)分为三组:每只给予吡嗪酰胺1000 mg/kg b.w./d;剂量为2000毫克/公斤体重。/d,两组均给予60 d;III-control。实验60 d后,分别处死实验组(ⅰ组、ⅱ组)和对照组大鼠,用氨基酸分析仪测定雄性大鼠软骨ⅱ型胶原的氨基酸含量。结果和讨论。吡嗪酰胺(不同剂量)对大鼠软骨II型胶原氨基酸含量的影响研究表明,与对照组相比,这些大鼠细胞外基质蛋白中存在剂量依赖性吡嗪酰胺介导的定量和定性变化。
{"title":"Pyrazinamide Effects on Cartilage Type II Collagen Amino Acid Composition.","authors":"Larysa B Bondarenko, Valentina M Kovalenko","doi":"10.1155/2012/781785","DOIUrl":"https://doi.org/10.1155/2012/781785","url":null,"abstract":"<p><p>Introduction. Current therapeutic regimens with first-line antitubercular agents are associated to a high rate of adverse effects which could cause pronounced changes in collagen's contents and structure. Investigation of these changes is very important for optimization of antitubercular therapy and minimization of treatment-caused harm. The aim of present paper was to investigate potential effect of pyrazinamide on male rats' cartilage type II collagen amino acid composition. Materials and Methods. Wistar albino male rats (160-200 g b.w.) were divided into three groups: I-received pyrazinamide per os at a dose of 1000 mg/kg b.w./day; II-at a dose of 2000 mg/kg b.w./day, in both groups it was given for 60 days; III-control. After 60 days of the experiment, rats of the experimental (groups I and II) and control groups were sacrificed and the amino acids contents of male rat cartilage type II collagens were determined using amino acid analyzer. Results and Discussion. The study of pyrazinamide effects (administered in different doses) on rat cartilage type II collagen amino acid contents demonstrated presence of dose-dependent pyrazinamide-mediated quantitative and qualitative changes in these rat extracellular matrix proteins in comparison with control.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"781785"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/781785","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"30631517","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Enzymes are regulated by their activation and inhibition. Enzyme activators can often be effective tools for scientific and medical purposes, although they are more difficult to obtain than inhibitors. Here, using the paired peptide method, we report on protease-cathepsin-E-activating peptides that are obtained at neutral pH. These selected peptides also underwent molecular evolution, after which their cathepsin E activation capability improved. Thus, the activators we obtained could enhance cathepsin-E-induced cancer cell apoptosis, which indicated their potential as cancer drug precursors.
{"title":"Peptide-Modulated Activity Enhancement of Acidic Protease Cathepsin E at Neutral pH.","authors":"Masayuki Komatsu, Madhu Biyani, Sunita Ghimire Gautam, Koichi Nishigaki","doi":"10.1155/2012/316432","DOIUrl":"https://doi.org/10.1155/2012/316432","url":null,"abstract":"<p><p>Enzymes are regulated by their activation and inhibition. Enzyme activators can often be effective tools for scientific and medical purposes, although they are more difficult to obtain than inhibitors. Here, using the paired peptide method, we report on protease-cathepsin-E-activating peptides that are obtained at neutral pH. These selected peptides also underwent molecular evolution, after which their cathepsin E activation capability improved. Thus, the activators we obtained could enhance cathepsin-E-induced cancer cell apoptosis, which indicated their potential as cancer drug precursors.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"316432"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/316432","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31200611","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
The silkworm, Bombyx mori, is an important economic insect for silk production. However, many of the mature peptides relevant to its various life stages remain unknown. Using RP-HPLC, MALDI-TOF MS, and previously identified peptides from B. mori and other insects in the transcriptome database, we created peptide profiles showing a total of 6 ion masses that could be assigned to peptides in eggs, including one previously unidentified peptide. A further 49 peptides were assigned to larval brains. 17 new mature peptides were identified in isolated masses. 39 peptides were found in pupal brains with 8 unidentified peptides. 48 were found in adult brains with 12 unidentified peptides. These new unidentified peptides showed highly significant matches in all MS analysis. These matches were then searched against the National Center for Biotechnology Information (NCBI) database to provide new annotations for these mature peptides. In total, 59 mature peptides in 19 categories were found in the brains of silkworms at the larval, pupal, and adult stages. These results demonstrate that peptidomic variation across different developmental stages can be dramatic. Moreover, the corpora cardiaca-corpora allata (CC-CA) complex was examined during the fifth larval instar. A total of 41 ion masses were assigned to peptides.
{"title":"Peptidomic Analysis of the Brain and Corpora Cardiaca-Corpora Allata Complex in the Bombyx mori.","authors":"Xiaoguang Liu, Xia Ning, Yan Zhang, Wenfeng Chen, Zhangwu Zhao, Qingwen Zhang","doi":"10.1155/2012/640359","DOIUrl":"https://doi.org/10.1155/2012/640359","url":null,"abstract":"<p><p>The silkworm, Bombyx mori, is an important economic insect for silk production. However, many of the mature peptides relevant to its various life stages remain unknown. Using RP-HPLC, MALDI-TOF MS, and previously identified peptides from B. mori and other insects in the transcriptome database, we created peptide profiles showing a total of 6 ion masses that could be assigned to peptides in eggs, including one previously unidentified peptide. A further 49 peptides were assigned to larval brains. 17 new mature peptides were identified in isolated masses. 39 peptides were found in pupal brains with 8 unidentified peptides. 48 were found in adult brains with 12 unidentified peptides. These new unidentified peptides showed highly significant matches in all MS analysis. These matches were then searched against the National Center for Biotechnology Information (NCBI) database to provide new annotations for these mature peptides. In total, 59 mature peptides in 19 categories were found in the brains of silkworms at the larval, pupal, and adult stages. These results demonstrate that peptidomic variation across different developmental stages can be dramatic. Moreover, the corpora cardiaca-corpora allata (CC-CA) complex was examined during the fifth larval instar. A total of 41 ion masses were assigned to peptides.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":"2012 ","pages":"640359"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/640359","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"31160010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-05-16DOI: 10.1155/2012/634769
Mythily Srinivasan, A Keith Dunker
The current version of the human immunome network consists of nearly 1400 interactions involving approximately 600 proteins. Intermolecular interactions mediated by proline-rich motifs (PRMs) are observed in many facets of the immune response. The proline-rich regions are known to preferentially adopt a polyproline type II helical conformation, an extended structure that facilitates transient intermolecular interactions such as signal transduction, antigen recognition, cell-cell communication and cytoskeletal organization. The propensity of both the side chain and the backbone carbonyls of the polyproline type II helix to participate in the interface interaction makes it an excellent recognition motif. An advantage of such distinct chemical features is that the interactions can be discriminatory even in the absence of high affinities. Indeed, the immune response is mediated by well-orchestrated low-affinity short-duration intermolecular interactions. The proline-rich regions are predominantly localized in the solvent-exposed regions such as the loops, intrinsically disordered regions, or between domains that constitute the intermolecular interface. Peptide mimics of the PRM have been suggested as potential antagonists of intermolecular interactions. In this paper, we discuss novel PRM-mediated interactions in the human immunome that potentially serve as attractive targets for immunomodulation and drug development for inflammatory and autoimmune pathologies.
当前版本的人类免疫组网络包括近 1400 种相互作用,涉及约 600 种蛋白质。在免疫反应的许多方面都可以观察到由富脯氨酸基序(PRM)介导的分子间相互作用。已知富脯氨酸区域优先采用多脯氨酸 II 型螺旋构象,这种扩展结构有利于瞬时分子间相互作用,如信号转导、抗原识别、细胞间通讯和细胞骨架组织。聚脯氨酸 II 型螺旋的侧链和骨架羰基都有参与界面相互作用的倾向,这使其成为一种极佳的识别图案。这种独特化学特征的一个优点是,即使没有高亲和力,相互作用也能起到鉴别作用。事实上,免疫反应是由精心策划的低亲和力短时分子间相互作用介导的。富含脯氨酸的区域主要位于溶剂暴露区,如环状区、内在无序区或构成分子间界面的结构域之间。有人建议将 PRM 的多肽模拟物作为分子间相互作用的潜在拮抗剂。在本文中,我们将讨论人类免疫组中由 PRM 介导的新型相互作用,它们有可能成为免疫调节和药物开发的诱人靶点,用于治疗炎症和自身免疫性病症。
{"title":"Proline rich motifs as drug targets in immune mediated disorders.","authors":"Mythily Srinivasan, A Keith Dunker","doi":"10.1155/2012/634769","DOIUrl":"10.1155/2012/634769","url":null,"abstract":"<p><p>The current version of the human immunome network consists of nearly 1400 interactions involving approximately 600 proteins. Intermolecular interactions mediated by proline-rich motifs (PRMs) are observed in many facets of the immune response. The proline-rich regions are known to preferentially adopt a polyproline type II helical conformation, an extended structure that facilitates transient intermolecular interactions such as signal transduction, antigen recognition, cell-cell communication and cytoskeletal organization. The propensity of both the side chain and the backbone carbonyls of the polyproline type II helix to participate in the interface interaction makes it an excellent recognition motif. An advantage of such distinct chemical features is that the interactions can be discriminatory even in the absence of high affinities. Indeed, the immune response is mediated by well-orchestrated low-affinity short-duration intermolecular interactions. The proline-rich regions are predominantly localized in the solvent-exposed regions such as the loops, intrinsically disordered regions, or between domains that constitute the intermolecular interface. Peptide mimics of the PRM have been suggested as potential antagonists of intermolecular interactions. In this paper, we discuss novel PRM-mediated interactions in the human immunome that potentially serve as attractive targets for immunomodulation and drug development for inflammatory and autoimmune pathologies.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":" ","pages":"634769"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC3362030/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39973188","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2012-01-01Epub Date: 2012-02-22DOI: 10.1155/2012/532519
Dolores Javier Sánchez-González, Enrique Méndez-Bolaina, Nayeli Isabel Trejo-Bahena
Platelet-derived Growth Factors (GFs) are biologically active peptides that enhance tissue repair mechanisms such as angiogenesis, extracellular matrix remodeling, and cellular effects as stem cells recruitment, chemotaxis, cell proliferation, and differentiation. Platelet-rich plasma (PRP) is used in a variety of clinical applications, based on the premise that higher GF content should promote better healing. Platelet derivatives represent a promising therapeutic modality, offering opportunities for treatment of wounds, ulcers, soft-tissue injuries, and various other applications in cell therapy. PRP can be combined with cell-based therapies such as adipose-derived stem cells, regenerative cell therapy, and transfer factors therapy. This paper describes the biological background of the platelet-derived substances and their potential use in regenerative medicine.
{"title":"Platelet-rich plasma peptides: key for regeneration.","authors":"Dolores Javier Sánchez-González, Enrique Méndez-Bolaina, Nayeli Isabel Trejo-Bahena","doi":"10.1155/2012/532519","DOIUrl":"https://doi.org/10.1155/2012/532519","url":null,"abstract":"<p><p>Platelet-derived Growth Factors (GFs) are biologically active peptides that enhance tissue repair mechanisms such as angiogenesis, extracellular matrix remodeling, and cellular effects as stem cells recruitment, chemotaxis, cell proliferation, and differentiation. Platelet-rich plasma (PRP) is used in a variety of clinical applications, based on the premise that higher GF content should promote better healing. Platelet derivatives represent a promising therapeutic modality, offering opportunities for treatment of wounds, ulcers, soft-tissue injuries, and various other applications in cell therapy. PRP can be combined with cell-based therapies such as adipose-derived stem cells, regenerative cell therapy, and transfer factors therapy. This paper describes the biological background of the platelet-derived substances and their potential use in regenerative medicine.</p>","PeriodicalId":14239,"journal":{"name":"International Journal of Peptides","volume":" ","pages":"532519"},"PeriodicalIF":0.0,"publicationDate":"2012-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1155/2012/532519","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40169868","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}