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Novel insights into DNA methylation-based epigenetic regulation of breast tumor angiogenesis. 基于DNA甲基化的乳腺肿瘤血管生成表观遗传调控的新见解。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.04.002
Sharath Mohan Bhat, Palla Ranga Prasad, Manjunath B Joshi

Breast tumors are highly vascularized and dependent on angiogenesis for growth, progression and metastasis. Like other solid tumors, vasculature in breast tumors also display leaky and tortuous phenotype and hence inhibit immune cell infiltration, show reduced efficacy to anticancer drugs and radiotherapy. Epigenetic reprogramming including significant alterations in DNA methylation in tumor and stromal cells generate an imbalance in expression of pro- and anti-angiogenic factors and subsequently lead to disordered angiogenesis. Hence, understanding DNA methylation-based regulation of angiogenesis in breast tumors may open new avenues for designing therapeutic targets. Our present review manuscript summarized contemporary knowledge of influence of DNA methylation in regulating angiogenesis. Further, we identified novel set of pro-angiogenic genes enriched in endothelial cells which are coregulated with DNMT isoforms in breast tumors and harboring CpG islands. Our analysis revealed promoters of pro-angiogenic genes were hypomethylated and anti-angiogenic genes were hypermethylated in tumors and further reflected on their expression patterns. Interestingly, promoter DNA methylation intensities of novel set of pro-angiogenic genes significantly correlated to patient survival outcome.

乳腺肿瘤是高度血管化的,其生长、进展和转移依赖于血管生成。与其他实体瘤一样,乳腺肿瘤的血管也表现出渗漏和弯曲的表型,从而抑制免疫细胞的浸润,对抗癌药物和放疗的疗效降低。表观遗传重编程包括肿瘤和基质细胞中DNA甲基化的显著改变,产生促血管生成因子和抗血管生成因子表达的不平衡,随后导致血管生成紊乱。因此,了解乳腺肿瘤中基于DNA甲基化的血管生成调控可能为设计治疗靶点开辟新的途径。本文综述了DNA甲基化对血管生成调控的影响。此外,我们在内皮细胞中发现了一组新的促血管生成基因,这些基因在乳腺肿瘤中与DNMT亚型共调节,并含有CpG岛。我们的分析显示,促血管生成基因的启动子在肿瘤中低甲基化,而抗血管生成基因的启动子在肿瘤中高甲基化,这进一步反映了它们的表达模式。有趣的是,一组新的促血管生成基因的启动子DNA甲基化强度与患者的生存结果显著相关。
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引用次数: 0
Impact of radiation therapy on healthy tissues. 放射治疗对健康组织的影响。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2022.11.006
Cyrus Chargari, Elie Rassy, Carole Helissey, Samir Achkar, Sabine Francois, Eric Deutsch

Radiation therapy has a fundamental role in the management of cancers. However, despite a constant improvement in radiotherapy techniques, the issue of radiation-induced side effects remains clinically relevant. Mechanisms of acute toxicity and late fibrosis are therefore important topics for translational research to improve the quality of life of patients treated with ionizing radiations. Tissue changes observed after radiotherapy are consequences of complex pathophysiology, involving macrophage activation, cytokine cascade, fibrotic changes, vascularization disorders, hypoxia, tissue destruction and subsequent chronic wound healing. Moreover, numerous data show the impact of these changes in the irradiated stroma on the oncogenic process, with interplays between tumor radiation response and pathways involved in the fibrotic process. The mechanisms of radiation-induced normal tissue inflammation are reviewed, with a focus on the impact of the inflammatory process on the onset of treatment-related toxicities and the oncogenic process. Possible targets for pharmacomodulation are also discussed.

放射治疗在癌症治疗中起着重要作用。然而,尽管放射治疗技术不断改进,放射引起的副作用问题仍然具有临床意义。因此,急性毒性和晚期纤维化的机制是转化研究的重要课题,以提高电离辐射治疗患者的生活质量。放疗后观察到的组织变化是复杂病理生理的结果,包括巨噬细胞活化、细胞因子级联、纤维化改变、血管化障碍、缺氧、组织破坏和随后的慢性伤口愈合。此外,大量数据显示辐照基质中的这些变化对致癌过程的影响,肿瘤辐射反应与纤维化过程中涉及的途径之间存在相互作用。本文综述了辐射诱导正常组织炎症的机制,重点介绍了炎症过程对治疗相关毒性发作和致癌过程的影响。还讨论了药物调节的可能靶点。
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引用次数: 0
Settling the uncertainty about unconventional circulating tumor cells: Epithelial-to-mesenchymal transition, cell fusion and trogocytosis. 解决非常规循环肿瘤细胞的不确定性:上皮-间充质转化、细胞融合和胞嘧啶。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-08-08 DOI: 10.1016/bs.ircmb.2023.07.004
Giulia Gallerani, Tania Rossi, Manuela Ferracin, Massimiliano Bonafè

Circulating tumor cells (CTCs) were first described 150 years ago. The so-called "classical" CTC populations (EpCAM+/CK+/CD45-) have been fully characterized and proposed as the most representative CTC subset, with clinical relevance. Nonetheless, other "atypical" or "unconventional" CTCs have also been identified, and their critical role in metastasis formation was demonstrated. In this chapter we illustrate the studies that led to the discovery of unconventional CTCs, defined as CTCs that display both epithelial and mesenchymal markers, or both cancer and immune markers, also in the form of hybrid cancer-immune cells. We also present biological explanations for the origin of these unconventional CTCs: epithelial to mesenchymal transition, cell-cell fusion and trogocytosis. We believe that a deeper knowledge on the biology of CTCs is needed to fully elucidate their role in cancer progression and their use as cancer biomarkers.

循环肿瘤细胞(CTC)在150年前首次被描述。所谓的“经典”CTC群体(EpCAM+/CK+/CD45-)已被充分表征,并被认为是最具代表性的CTC亚群,具有临床相关性。尽管如此,也发现了其他“非典型”或“非常规”CTC,并证明了它们在转移形成中的关键作用。在本章中,我们说明了导致发现非常规CTC的研究,即同时显示上皮和间充质标志物,或同时显示癌症和免疫标志物的CTC,也以混合癌-免疫细胞的形式。我们还对这些非常规CTC的起源提出了生物学解释:上皮-间充质转化、细胞-细胞融合和胞嘧啶作用。我们认为,需要对CTC的生物学有更深入的了解,以充分阐明它们在癌症进展中的作用及其作为癌症生物标志物的用途。
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引用次数: 0
The various functions and phenotypes of macrophages are also reflected in their responses to irradiation: A current overview. 巨噬细胞的各种功能和表型也反映在它们对辐照的反应中:当前概述。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.01.002
Lisa Deloch, Michael Rückert, Thomas Weissmann, Sebastian Lettmaier, Eva Titova, Teresa Wolff, Felix Weinrich, Rainer Fietkau, Udo S Gaipl

Macrophages are a vital part of the innate immune system that are involved in healthy biological processes but also in disease modulation and response to therapy. Ionizing radiation is commonly used in the treatment of cancer and, in a lower dose range, as additive therapy for inflammatory diseases. In general, lower doses of ionizing radiation are known to induce rather anti-inflammatory responses, while higher doses are utilized in cancer treatment where they result, next to tumor control, in rather inflammatory responses. Most experiments that have been carried out in ex vivo on macrophages find this to be true, however in vivo, tumor-associated macrophages, for example, show a contradictory response to the respective dose-range. While some knowledge in radiation-induced modulations of macrophages has been collected, many of the underlying mechanisms remain unclear. Due to their pivotal role in the human body, however, they are a great target in therapy and could potentially aid in better treatment outcome. We therefore summarized the current knowledge of macrophage mediated radiation responses.

巨噬细胞是先天免疫系统的重要组成部分,参与健康的生物过程,也参与疾病调节和治疗反应。电离辐射通常用于治疗癌症,在较低剂量范围内,作为炎症性疾病的附加治疗。一般来说,已知较低剂量的电离辐射可引起相当大的抗炎反应,而较高剂量的电离辐射则用于癌症治疗,其结果仅次于肿瘤控制,是相当大的炎症反应。大多数在离体巨噬细胞上进行的实验发现这是正确的,然而在体内,例如,肿瘤相关的巨噬细胞对各自的剂量范围表现出矛盾的反应。虽然在辐射诱导的巨噬细胞调节方面已经收集了一些知识,但许多潜在的机制仍不清楚。然而,由于它们在人体中的关键作用,它们是治疗中的一个重要目标,可能有助于更好的治疗结果。因此,我们总结了巨噬细胞介导的辐射反应的现有知识。
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引用次数: 0
Dual impact of radiation therapy on tumor-targeting immune responses. 放射治疗对肿瘤靶向免疫反应的双重影响。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/S1937-6448(23)00114-4
Céline Mirjolet, Jérémy Baude, Lorenzo Galluzzi
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引用次数: 0
Super-enhancer landscape rewiring in cancer: The epigenetic control at distal sites. 癌症中的超级增强子景观重新布线:远端位点的表观遗传控制。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.03.013
Eros Di Giorgio, Roberta Benetti, Emanuela Kerschbamer, Luigi Xodo, Claudio Brancolini

Super-enhancers evolve as elements at the top of the hierarchical control of gene expression. They are important end-gatherers of signaling pathways that control stemness, differentiation or adaptive responses. Many epigenetic regulations focus on these regions, and not surprisingly, during the process of tumorigenesis, various alterations can account for their dysfunction. Super-enhancers are emerging as key drivers of the aberrant gene expression landscape that sustain the aggressiveness of cancer cells. In this review, we will describe and discuss about the structure of super-enhancers, their epigenetic regulation, and the major changes affecting their functionality in cancer.

超级增强子作为基因表达层次控制的顶层元素而进化。它们是控制干性、分化或适应性反应的信号通路的重要末端采集者。许多表观遗传调控集中在这些区域,毫不奇怪,在肿瘤发生过程中,各种改变可以解释它们的功能障碍。超级增强子正在成为维持癌细胞侵袭性的异常基因表达景观的关键驱动因素。在这篇综述中,我们将描述和讨论超级增强子的结构,它们的表观遗传调控,以及在癌症中影响它们功能的主要变化。
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引用次数: 0
Models to study CTCs and CTC culture methods. 研究CTC和CTC培养方法的模型。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 Epub Date: 2023-08-03 DOI: 10.1016/bs.ircmb.2023.07.007
Cristóbal Fernández-Santiago, Rafael López-López, Roberto Piñeiro

The vast majority of cancer-related deaths are due to the presence of disseminated disease. Understanding the metastatic process is key to achieving a reduction in cancer mortality. Particularly, there is a need to understand the molecular mechanisms that drive cancer metastasis, which will allow the identification of curative treatments for metastatic cancers. Liquid biopsies have arisen as a minimally invasive approach to gain insights into the biology of metastasis. Circulating tumour cells (CTCs), shed to the circulation from the primary tumour or metastatic lesions, are a key component of liquid biopsy. As metastatic precursors, CTCs hold the potential to unravel the mechanisms involved in metastasis formation as well as new therapeutic strategies for treating metastatic disease. However, the complex biology of CTCs together with their low frequency in circulation are factors hampering an in-depth mechanistic investigation of the metastatic process. To overcome these problems, CTC-derived models, including CTC-derived xenograft (CDX) and CTC-derived ex vivo cultures, in combination with more traditional in vivo models of metastasis, have emerged as powerful tools to investigate the biological features of CTCs facilitating cancer metastasis and uncover new therapeutic opportunities. In this chapter, we provide an up to date view of the diverse models used in different cancers to study the biology of CTCs, and of the methods developed for CTC culture and expansion, in vivo and ex vivo. We also report some of the main challenges and limitations that these models are facing.

绝大多数与癌症相关的死亡是由于传播性疾病的存在。了解转移过程是降低癌症死亡率的关键。特别是,需要了解驱动癌症转移的分子机制,这将允许确定转移癌的治疗方法。液体活检已经成为一种微创方法,可以深入了解转移生物学。循环肿瘤细胞(CTC)从原发性肿瘤或转移性病变脱落到循环中,是液体活检的关键组成部分。CTC作为转移前体,有可能揭示转移形成的机制,以及治疗转移性疾病的新治疗策略。然而,CTC的复杂生物学及其在循环中的低频率是阻碍对转移过程进行深入机制研究的因素。为了克服这些问题,CTC衍生模型,包括CTC衍生异种移植物(CDX)和CTC衍生离体培养物,与更传统的体内转移模型相结合,已成为研究促进癌症转移的CTC的生物学特征并揭示新的治疗机会的强大工具。在本章中,我们提供了在不同癌症中用于研究CTC生物学的各种模型的最新视图,以及为体内和离体CTC培养和扩增开发的方法。我们还报告了这些模型面临的一些主要挑战和局限性。
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引用次数: 0
Oncolytic viruses in hematological malignancies: hijacking disease biology and fostering new promises for immune and cell-based therapies. 恶性血液病中的溶瘤病毒:劫持疾病生物学并促进免疫和细胞治疗的新前景。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.05.001
Mário Sousa-Pimenta, Ângelo Martins, Vera Machado

The increased tropism for malignant cells of some viruses has been highlighted in recent studies, prompting their use as a strategy to modify the transcriptional profile of those cells, while sparing the healthy ones. Likewise, they have been recognized as players modulating microenvironmental immunity, namely through an increase in antigen-presenting, natural-killer, and T CD8+ cytotoxic cells by a cross-priming mechanism elicited by tumor-associated antigens. The immunomodulatory role of the oncolytic virus seems relevant in hematological malignancies, which may relapse as a result of a proliferative burst elicited by an external stimulus in progenitor or neoplastic stem cells. By reprogramming the host cells and the surrounding environment, the potential of virotherapy ranges from the promise to eradicate the minimal measurable disease (in acute leukemia, for example), to the ex vivo purging of malignant progenitor cells in the setting of autologous bone marrow transplantation. In this review, we analyze the recent advances in virotherapy in hematological malignancies, either when administered alone or together with chemotherapeutic agents or other immunomodulators.

在最近的研究中,一些病毒对恶性细胞的趋向性增加,促使它们作为一种策略来修改这些细胞的转录谱,同时保留健康细胞。同样,它们也被认为是调节微环境免疫的参与者,即通过肿瘤相关抗原引发的交叉启动机制,通过增加抗原呈递、自然杀伤和T CD8+细胞毒性细胞。溶瘤病毒的免疫调节作用似乎与血液系统恶性肿瘤有关,这些恶性肿瘤可能由于外部刺激引起祖细胞或肿瘤干细胞的增殖爆发而复发。通过对宿主细胞和周围环境进行重新编程,病毒疗法的潜力范围从有望根除最小可测量的疾病(例如急性白血病)到在自体骨髓移植环境中清除恶性祖细胞。在这篇综述中,我们分析了血液系统恶性肿瘤病毒治疗的最新进展,无论是单独使用还是与化疗药物或其他免疫调节剂联合使用。
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引用次数: 0
Epigenetic regulation of epithelial-mesenchymal transition during cancer development. 肿瘤发生过程中上皮-间质转化的表观遗传调控。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.05.007
Sunisa Yoodee, Visith Thongboonkerd

Epithelial-mesenchymal transition (EMT) plays essential roles in promoting malignant transformation of epithelial cells, leading to cancer progression and metastasis. During EMT-induced cancer development, a wide variety of genes are dramatically modified, especially down-regulation of epithelial-related genes and up-regulation of mesenchymal-related genes. Expression of other EMT-related genes is also modified during the carcinogenic process. Especially, epigenetic modifications are observed in the EMT-related genes, indicating their involvement in cancer development. Mechanically, epigenetic modifications of histone, DNA, mRNA and non-coding RNA stably change the EMT-related gene expression at transcription and translation levels. Herein, we summarize current knowledge on epigenetic regulatory mechanisms observed in EMT process relate to cancer development in humans. The better understanding of epigenetic regulation of EMT during cancer development may lead to improvement of drug design and preventive strategies in cancer therapy.

上皮-间质转化(epithelial -mesenchymal transition, EMT)在促进上皮细胞的恶性转化,导致癌症的进展和转移中起着至关重要的作用。在emt诱导的癌症发展过程中,多种基因被显著修饰,尤其是上皮相关基因的下调和间质相关基因的上调。其他emt相关基因的表达在致癌过程中也会发生改变。特别是在emt相关基因中观察到表观遗传修饰,表明它们参与了癌症的发展。机械地,组蛋白、DNA、mRNA和非编码RNA的表观遗传修饰在转录和翻译水平上稳定地改变了emt相关基因的表达。在此,我们总结了目前关于EMT过程中观察到的与人类癌症发展相关的表观遗传调控机制的知识。更好地了解EMT在癌症发展过程中的表观遗传调控可能有助于改进癌症治疗中的药物设计和预防策略。
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引用次数: 0
Epigenetic inhibitors and their role in cancer therapy. 表观遗传抑制剂及其在癌症治疗中的作用。
3区 生物学 Q1 Biochemistry, Genetics and Molecular Biology Pub Date : 2023-01-01 DOI: 10.1016/bs.ircmb.2023.04.005
Nouha Abdelaziz, Lubna Therachiyil, Hana Q Sadida, Ateeque Mohamed Ali, Omar S Khan, Mayank Singh, Abdul Q Khan, Ammira S Al-Shabeeb Akil, Ajaz A Bhat, Shahab Uddin

Epigenetic modifications to DNA are crucial for normal cellular and biological functioning. DNA methylation, histone modifications, and chromatin remodeling are the most common epigenetic mechanisms. These changes are heritable but still reversible. The aberrant epigenetic alterations, such as DNA methylation, histone modification, and non-coding RNA (ncRNA)-mediated gene regulation, play an essential role in developing various human diseases, including cancer. Recent studies show that synthetic and dietary epigenetic inhibitors attenuate the abnormal epigenetic modifications in cancer cells and therefore have strong potential for cancer treatment. In this chapter, we have highlighted various types of epigenetic modifications, their mechanism, and as drug targets for epigenetic therapy.

表观遗传修饰的DNA是至关重要的正常细胞和生物功能。DNA甲基化、组蛋白修饰和染色质重塑是最常见的表观遗传机制。这些变化是可遗传的,但仍然是可逆的。异常的表观遗传改变,如DNA甲基化、组蛋白修饰和非编码RNA (ncRNA)介导的基因调控,在包括癌症在内的各种人类疾病的发生中发挥着重要作用。最近的研究表明,合成和膳食表观遗传抑制剂可以减弱癌细胞中异常的表观遗传修饰,因此具有很强的癌症治疗潜力。在本章中,我们重点介绍了各种类型的表观遗传修饰,它们的机制,以及作为表观遗传治疗的药物靶点。
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引用次数: 0
期刊
International review of cell and molecular biology
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