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Optimizing Cancer Treatment: A Comprehensive Review of Active and Passive Drug Delivery Strategies. 优化癌症治疗:主动和被动给药策略的综合综述。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-01 DOI: 10.61882/ibj.4960
Parastoo Tarighi, Seyedeh Mona Mousavi Esfahani, Ali Emamjomeh, Seyedeh Zohreh Mirjalili, Parastoo Mirzabeigi

Nanocarriers as powerful tools for delivering drugs to tumors provide new strategies for cancer treatment. These delivery systems encompass a diverse variety of structures, including polymeric nanoparticles (NPs), liposomes, dendrimers, micelles, and inorganic NPs such as gold and silica. Each type exhibits distinct physicochemical advantages that contribute to stability, drug-loading capacity, and targeting efficacy. Engineered nanocarriers can be utilized for the active targeting of tumor-specific receptors or for passive targeting of tumors via the enhanced permeability (EPR) and retention effect, a characteristic of abnormal tumor vasculature. This targeting approach enables the precise delivery of the therapeutic agents at tumor sites, increasing drug efficacy while minimizing exposure to healthy tissues. The benefits of these strategies include reduced systemic adverse effects, improved bioavailability, and an optimized therapeutic index. This review examines both active and passive drug delivery systems, with a special focus on the characteristics of the EPR effect.

纳米载体作为向肿瘤输送药物的有力工具,为癌症治疗提供了新的策略。这些递送系统包含多种结构,包括聚合NPs、脂质体、树状大分子、胶束和无机NPs,如金和二氧化硅。每种类型都表现出独特的物理化学优势,有助于稳定性,载药能力和靶向效力。工程纳米载体可用于主动靶向肿瘤特异性受体或通过EPR效应被动靶向肿瘤,EPR效应是肿瘤血管异常的特征。这种靶向方法能够在肿瘤部位精确地递送治疗剂,提高药物疗效,同时最大限度地减少对健康组织的暴露。这些策略的好处包括减少全身不良反应,提高生物利用度和优化治疗指数。本文综述了主动和被动药物传递系统,特别关注EPR效应的特征。
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引用次数: 0
Dietary Conjugated Linoleic Acid Isomers Modify the Fatty Acid Composition of Liver and Adipose Tissues. sdafsdf。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-01 DOI: 10.61882/ibj.4990
Guillermo Hernández Díaz, Julio C. Ramírez Nava, Isaac Aguirre Maldonaldo, Beatriz Agame Lagunes, Narvick L. Cortez Ríos, Sandra Hernandez Leyva, Hugo S. García, Alfonso Alexander Aguilera
<p><strong>Background: </strong>Conjugated linoleic acids (CLA) are a group of isomers derived from linoleic acid, naturally present in beef, lamb, and dairy products. CLA has been reported to exert therapeutic effects on cancer, obesity, and diabetes. This study evaluated the effects of a mixture containing equal proportions of CLA isomers (c9,t11 and t10,c12) on insulin resistance (IR) and their incorporation into the plasma membranes of adipocytes and hepatocytes in SHRs.</p><p><strong>Methods: </strong>For eight weeks, one group of hypertensive rats received sunflower oil supplemented with CLA isomers, while the control group received only vegetable oil. Serum parameters were measured, and the fatty acid composition of plasma membranes was analyzed using gas chromatography.</p><p><strong>Results: </strong>Rats treated with CLA isomers showed a reduction in body weight (BW), IR, and hypertension. Additionally, there was a significant incorporation of CLA into the plasma membranes of adipocytes and hepatocytes. In contrast, the control rats displayed higher levels of n-6 polyunsaturated fatty acid and arachidonic acid (AA) in their membranes, which promote the synthesis of eicosanoids and hypertensive prostaglandins. These findings were further supported by data mining analysis, which linked the results to the expression levels of genes encoding enzymes involved in the synthesis of PGE2, D2, and F2α from AA.</p><p><strong>Conclusion: </strong>The mixture of CLA isomers reduced BW, IR, and hypertension in SHRs. These effects were associated with the incorporation of c9,t11 and t10,c12 isomers into the plasma membranes of adipocytes and hepatocytes.</p><p><strong>Background: </strong>Conjugated linoleic acids are a group of isomers derived from linoleic acid, naturally present in beef, lamb, and dairy products. CLA has been reported to exert therapeutic effects on cancer, obesity, and diabetes. This study evaluated the effects of a mixture containing equal proportions of CLA isomers (c9,t11 and t10,c12) on IR and their incorporation into the plasma membranes of adipocytes and hepatocytes in SHRs.</p><p><strong>Methods: </strong>For eight weeks, one group of hypertensive rats received sunflower oil supplemented with CLA isomers, while the control group received only vegetable oil. Serum parameters were measured, and the fatty acid composition of plasma membranes was analyzed using gas chromatography.</p><p><strong>Results: </strong>Rats treated with CLA isomers showed a reduction in BW, IR, and hypertension. Additionally, there was a significant incorporation of CLA into the plasma membranes of adipocytes and hepatocytes. In contrast, the control rats displayed higher levels of n-6 PUFA and AA in their membranes, which promote the synthesis of eicosanoids and hypertensive prostaglandins. These findings were further supported by data mining analysis, which linked the results to the expression levels of genes encoding enzymes involved in the synthes
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引用次数: 0
Association of rs4646287 Polymorphism with the Risk of Hepatitis B Virus Infection and the Progression of Hepatocellular Carcinoma in an Iranian Population. sdfsd。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-07-01 DOI: 10.61882/ibj.4979
Hassan Akrami, Mohammad Reza Fattahi, Mastaneh Zeraatiannejad, Jamal Sarvari, Yousef Nikmanesh, Zahra Mansourabadi, Zahra Yazdani

Background: Hepatitis B virus (HBV) is responsible for more than one million deaths annually, mainly due to HBV-related diseases and hepatocellular carcinoma (HCC). HBV enters hepatocytes and interacts with the sodium taurocholate co-transporting polypeptide. While several single nucleotide polymorphisms (SNPs) have been linked to HBV infection and HCC, further research is needed to clarify the precise role of SNPs. The relationship of the rs4646287 SNP with the risk of HBV infection and the progression of cirrhosis and HCC has been investigated in different populations. This study aimed to evaluate the association of the rs4646287 SNP with HBV infection, cirrhosis, and HCC in an Iranian population.

Methods: The whole blood DNA was extracted from healthy individuals and patients with HBV, cirrhosis, and HCC. Primers for the C and T variants were designed using Primer1. The genotypes of the samples were identified using Tetra-ARMS PCR. The Tetra-ARMS PCR products were analyzed by electrophoresis on 2.5% agarose gels.

Results: Individuals with the rs4646287 TT genotype exhibited a significantly reduced risk of developing cirrhosis and HCC compared to healthy controls. The TT genotype also showed a decreased correlation between the HBV group and those with cirrhosis and HCC.

Conclusion: Our findings suggest that the rs4646287 TT genotype is associated with a lower risk of developing HBV-related diseases and HCC in an Iranian population.

Background: Hepatitis B virus is responsible for more than one million deaths annually, mainly due to HBV-related diseases and HCC. HBV enters hepatocytes and interacts with the NTCP. While several SNPs have been linked to HBV infection and HCC, further research is needed to clarify the precise role of SNPs. The relationship of the rs4646287 SNP with the risk of HBV infection and the progression of cirrhosis and HCC has been investigated in different populations. This study aimed to evaluate the association of the rs4646287 SNP with HBV infection, cirrhosis, and HCC in an Iranian population.

Methods: The whole blood DNA was extracted from healthy individuals and patients with HBV, cirrhosis, and HCC. Primers for the C and T variants were designed using Primer1. The genotypes of the samples were identified using Tetra-ARMS PCR. The Tetra-ARMS PCR products were analyzed by electrophoresis on 2.5% agarose gels.

Results: Individuals with the rs4646287 TT genotype exhibited a significantly reduced risk of developing cirrhosis and HCC compared to healthy controls. The TT genotype also showed a decreased correlation between the HBV group and those with cirrhosis and HCC.

Conclusion: Our findings suggest that the rs4646287 TT genotype is associated with a lower risk of developing HBV-related diseases and HCC in an Iranian population.

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引用次数: 0
Development of Experimental Platforms to Assess Helicobacter pylori HopQ Interaction with Host CEACAM Molecules. 幽门螺杆菌HopQ与宿主CEACAM分子相互作用实验平台的建立
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.4937/ibj.5029
Nazanin Shans, Maryam Esmaeili, Kimia Abraheh, Niloofar Asadi Hanjani, Maedeh Farrokhi, Negar Sardarpour, Yeganeh Talebkhan, Fatemeh Kazemi-Lomedasht, Esmat Mirabzadeh, Marjan Mohammadi

Background: Helicobacter pylori is an extracellular bacterium responsible for various gastrointestinal diseases, such as peptic ulcers and gastric cancer. It uses multiple mechanisms to colonize the harsh, acidic environment of the stomach and establish its pathogenic processes, mostly through CagA translocation. While cell surface integrin molecules were previously believed to be the main mediators anchoring H. pylori and facilitating this process, recent studies highlight the critical role of the interaction between the bacterial adhesin Helicobacter pylori outer membrane protein Q (HopQ) and host carcinoembryonic antigen-related cell adhesion molecules (CEACAMs) in CagA translocation and subsequent pathogenic signaling.

Methods: Recombinant proteins, including HopQ, HopQ-GFP (green fluorescent protein), HopQ-HRP (horseradish peroxidase), and recombinant N-terminal domain of human CEACAM1 (C1ND), were produced via gene cloning, expression, and purification techniques. Ligand-receptor interactions were evaluated using FACS analysis along with antigen- and cell-based ELISA assays.

Results: In this study, we have developed antigen and cell-based platforms using recombinant fusion proteins (HopQ-GFP and HopQ-HRP) that effectively interact with recombinant C1ND, as well as various CEACAM molecules expressed on gastric cell lines (MKN45 and AGS).

Conclusion: These assay platforms enable detailed investigation of the HopQ-CEACAM interaction and supports high-throughput screening of inhibitors, facilitating the identification of potential drugs or vaccine candidates targeting H. pylori infection.

背景:幽门螺杆菌是一种细胞外细菌,可导致多种胃肠道疾病,如消化性溃疡和胃癌。它使用多种机制在胃部恶劣的酸性环境中定植并建立其致病过程,主要是通过CagA易位。虽然细胞表面整合素分子以前被认为是锚定幽门螺杆菌并促进这一过程的主要介质,但最近的研究强调了细菌粘附HopQ和宿主CEACAMs之间的相互作用在CagA易位和随后的致病信号传导中的关键作用。方法:通过基因克隆、表达和纯化技术制备HopQ、HopQ- gfp、HopQ- hrp和C1ND重组蛋白。使用FACS分析以及基于抗原和细胞的ELISA检测来评估配体与受体的相互作用。结果:在本研究中,我们利用重组融合蛋白(HopQ-GFP和HopQ-HRP)开发了抗原和基于细胞的平台,这些融合蛋白可与重组C1ND以及在胃细胞系(MKN45和AGS)上表达的各种CEACAM分子有效相互作用。结论:这些检测平台可以详细研究HopQ-CEACAM相互作用,并支持高通量筛选抑制剂,促进鉴定针对幽门螺杆菌感染的潜在药物或候选疫苗。
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引用次数: 0
Effects of Peptides and Bioactive Peptides on Acute Kidney Injury: A Review Study. 多肽和生物活性肽在急性肾损伤中的作用研究综述。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.5000
Zeynab Mohamadi Yarijani, Houshang Najafi

Acute kidney injury (AKI) is the sudden loss of kidney function that occurs within hours or days, resulting in the accumulation of waste materials in the blood and disruption of fluid balance. AKI is prevalent among hospitalized patients, especially the elderly in the intensive care units. Inflammation, oxidative stress, and apoptosis are typical physiological responses following AKI. Peptides, especially bioactive peptides, exhibit various properties, including immunomodulatory and antihypertensive effects, and functions against diabetes, obesity, and cancer. In recent years, much attention has been drawn to the application of peptides and bioactive peptides in pharmaceuticals, particularly for their potential use, alone or in combination, in the treatment of AKI. Given the critical role of inflammation, oxidative stress, and apoptosis pathways in AKI, along with the anti-inflammatory, anti-apoptotic, and antioxidant effects of peptides, this study was designed to review the effects and underlying mechanisms of peptides in AKI.

急性肾损伤是指肾脏功能在数小时或数天内突然丧失,导致废物在血液中积聚和体液平衡被破坏。AKI在住院患者中很普遍,尤其是重症监护病房的老年人。炎症、氧化应激和细胞凋亡是AKI后的典型生理反应。多肽,尤其是生物活性多肽,具有多种特性,包括免疫调节和降压作用,以及抗糖尿病、肥胖和癌症的功能。近年来,肽和生物活性肽在药物中的应用引起了人们的广泛关注,特别是它们在治疗AKI方面的潜在用途,无论是单独使用还是联合使用。鉴于炎症、氧化应激和凋亡通路在AKI中的关键作用,以及肽的抗炎、抗凋亡和抗氧化作用,本研究旨在回顾肽在AKI中的作用及其潜在机制。
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引用次数: 0
Upregulation of CircCSPP1, CircNRIP1, and CircSMAD2 in Breast Cancer and Their Potential as Diagnostic Biomarkers. CircCSPP1, CircNRIP1和CircSAMD2在乳腺癌中的上调及其作为诊断生物标志物的潜力
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.4945
Mahsa Keshavarz-Fathi, Farzaneh Darbeheshti, Rangarirai Makuku, Parmida Sadat Pezeshki, Homa Seyedmirzaei, Yaser Mansoori, Ali Mohammad Mosadeghrad, Nima Rezaei

Background: Identifying novel diagnostic biomarkers with stable structures, such as circulating circular RNAs (circRNAs) can improve the early detection and management of BC. Herein, we conducted this study to analyze the expression profile of four circRNAs, including circCSPP1 (hsa_circ_0001806), circNRIP1 (hsa_circ_0004771), circSMAD2 (hsa_circ_0000847), and circFOXP1 (hsa_circ_0008234) in BC.

Methods: Tumor tissues and adjacent normal tissues were obtained from patients with sporadic breast cancer (BC). Divergent primers were designed to amplify the target transcripts using quantitative real-time PCR. The expression profiles of circRNAs were analyzed in tumor and adjacent normal tissues. Sanger sequencing was performed to confirm the back-splicing junctions of circRNAs. ROC curves were generated to assess the potential of the mentioned RNAs as diagnostic biomarkers.

Results: We observed a significant upregulation of circCSPP1, circNRIP1, and circSMAD2 in tumor tissue compared to adjacent normal tissues. Among them, circCSPP1 was the most highly upregulated one in tumor samples from 39 patients. Expression of circCSPP1 was significantly higher in estrogen receptor (ER)-negative, progesterone receptor (PR)-negative, human epidermal growth factor receptor-2 (HER2)-negative, and triple-negatives compared to ER-positive, PR-positive, HER2-positive, and non-triple-negative ones. Expression of circNRIP1 was also significantly elevated in the ER-negative and the triple-negative subgroups. These three circRNAs also displayed a desirable potential as diagnostic biomarkers.

Conclusion: : This is the first paper that reports the upregulation of circCSPP1 and circSMAD2 in BC and upregulation of circCSPP1 and circNRIP1 in the triple-negative subgroup. Our findings suggest that circCSPP1, circNRIP1, and circSMAD2 may serve as promising diagnostic biomarkers for BC. Identifying the downstream pathways regulated by these circRNAs could lead to the discovery of new therapeutic targets.

背景:鉴定具有稳定结构的新型诊断生物标志物,如circRNAs,可以改善BC的早期发现和管理。在此,我们进行了这项研究,分析了四种circRNAs的表达谱,包括circCSPP1 (hsa_circ_0001806)、circNRIP1 (hsa_circ_0004771)、circSMAD2 (hsa_circ_0000847)和circFOXP1 (hsa_circ_0008234)。方法:取散发性BC患者的肿瘤组织及邻近正常组织。设计不同引物,利用实时定量PCR扩增目标转录本。在肿瘤和邻近正常组织中分析环状rna的表达谱。Sanger测序确认环状rna的反向剪接连接。生成ROC曲线以评估上述rna作为诊断性生物标志物的潜力。结果:与邻近正常组织相比,我们观察到肿瘤组织中circCSPP1、circNRIP1和circSMAD2的显著上调。其中,在39例患者的肿瘤样本中,circCSPP1是上调幅度最大的一个。circCSPP1在er阴性、pr阴性、her2阴性和三阴性中的表达明显高于er阳性、pr阳性、her2阳性和非三阴性。在er阴性和三阴性亚组中,circNRIP1的表达也显著升高。这三种环状rna也显示出作为诊断生物标志物的理想潜力。结论:这是第一篇报道circCSPP1和circSMAD2在BC中上调,circCSPP1和circNRIP1在三阴性亚组中上调的论文。我们的研究结果表明circCSPP1, circNRIP1和circSMAD2可能作为BC的有希望的诊断生物标志物。确定由这些环状rna调控的下游通路可能会导致新的治疗靶点的发现。
{"title":"Upregulation of CircCSPP1, CircNRIP1, and CircSMAD2 in Breast Cancer and Their Potential as Diagnostic Biomarkers.","authors":"Mahsa Keshavarz-Fathi, Farzaneh Darbeheshti, Rangarirai Makuku, Parmida Sadat Pezeshki, Homa Seyedmirzaei, Yaser Mansoori, Ali Mohammad Mosadeghrad, Nima Rezaei","doi":"10.61882/ibj.4945","DOIUrl":"10.61882/ibj.4945","url":null,"abstract":"<p><strong>Background: </strong>Identifying novel diagnostic biomarkers with stable structures, such as circulating circular RNAs (circRNAs) can improve the early detection and management of BC. Herein, we conducted this study to analyze the expression profile of four circRNAs, including circCSPP1 (hsa_circ_0001806), circNRIP1 (hsa_circ_0004771), circSMAD2 (hsa_circ_0000847), and circFOXP1 (hsa_circ_0008234) in BC.</p><p><strong>Methods: </strong>Tumor tissues and adjacent normal tissues were obtained from patients with sporadic breast cancer (BC). Divergent primers were designed to amplify the target transcripts using quantitative real-time PCR. The expression profiles of circRNAs were analyzed in tumor and adjacent normal tissues. Sanger sequencing was performed to confirm the back-splicing junctions of circRNAs. ROC curves were generated to assess the potential of the mentioned RNAs as diagnostic biomarkers.</p><p><strong>Results: </strong>We observed a significant upregulation of circCSPP1, circNRIP1, and circSMAD2 in tumor tissue compared to adjacent normal tissues. Among them, circCSPP1 was the most highly upregulated one in tumor samples from 39 patients. Expression of circCSPP1 was significantly higher in estrogen receptor (ER)-negative, progesterone receptor (PR)-negative, human epidermal growth factor receptor-2 (HER2)-negative, and triple-negatives compared to ER-positive, PR-positive, HER2-positive, and non-triple-negative ones. Expression of circNRIP1 was also significantly elevated in the ER-negative and the triple-negative subgroups. These three circRNAs also displayed a desirable potential as diagnostic biomarkers.</p><p><strong>Conclusion: </strong>: This is the first paper that reports the upregulation of circCSPP1 and circSMAD2 in BC and upregulation of circCSPP1 and circNRIP1 in the triple-negative subgroup. Our findings suggest that circCSPP1, circNRIP1, and circSMAD2 may serve as promising diagnostic biomarkers for BC. Identifying the downstream pathways regulated by these circRNAs could lead to the discovery of new therapeutic targets.</p>","PeriodicalId":14500,"journal":{"name":"Iranian Biomedical Journal","volume":" ","pages":"159-166"},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12396114/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144591253","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineering of the Caspase-3 Gene in Recombinant CHO Cells Caused More Apoptosis Resistance and enhanced Recombinant Protein Production Than the BAX Gene. Caspase-3基因在重组CHO细胞中的工程化比BAX基因更能抵抗细胞凋亡并促进重组蛋白的产生。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.4934
Amirabbas Rahimi, Morteza Karimipoor, Reza Mahdian, Atefeh Alipour, Saadi Hosseini, Marzieh Mohammadi, Hooman Kaghazian, Hosein Shahsavarani, Mohammad Ali Shokrgozar

Background: BAX and caspase-3 are essential genes in the apoptotic pathway of cells, promoting the apoptotic cascade through different mechanisms. Inhibition of these genes can increase the longevity of cells in cell culture. This study aimed to compare the effects of clustered regularly interspaced short palindromic repeats-CRISPR-associated protein 9 (CRISPR-Cas9)-mediated knockdown of BAX and caspase-3 genes on apoptosis inhibition, cell lifespan, and erythropoietin (EPO) production in CHO cell lines.

Methods: The BAX and caspase-3 gene expression was evaluated in the recombinant Chinese hamster ovary (rCHO) cell lines producing EPO using the CRISPR-Cas9 method. Their anti-apoptotic effects and the level of EPO expression were also compared. In addition, oleuropein (OP) as an apoptosis inducer, was introduced to the manipulated cell line to assess the stability and viability of the manipulated cell lines.

Results: The rCHO cells with the manipulated BAX gene exhibited a higher cell density than those with the manipulated caspase-3 gene (152% vs. 142%). Despite the increased cell density in the cells with the BAX gene manipulation, EPO production was higher in the cells with the manipulated caspase-3 gene (1.58-fold increase in the BAX-manipulated cells compared to a 1.70-fold increase in the caspase-3-manipulated cells).

Conclusion: Our observations suggest that the downregulation of the BAX and caspase-3 genes using the CRISPR method, inhibits apoptosis and enhances the yield of recombinant EPO, even in the presence of an apoptosis inducer. Additionally, reduction of caspase-3 expression was proved to be more effective than BAX in extending the lifespan of cells and producing heterologous recombinant proteins.

背景:BAX和caspase-3是细胞凋亡通路中必不可少的基因,通过不同的机制促进细胞凋亡级联。抑制这些基因可以增加细胞培养中细胞的寿命。本研究旨在比较crispr - cas9介导的BAX和caspase-3基因敲低对CHO细胞系凋亡抑制、细胞寿命和EPO生成的影响。方法:采用CRISPR-Cas9方法,检测产生EPO的rCHO细胞系中BAX和caspase-3基因的表达。比较其抗凋亡作用及EPO表达水平。此外,将OP作为一种凋亡诱导剂引入到操纵细胞系中,以评估操纵细胞系的稳定性和活力。结果:转染BAX基因的rCHO细胞密度高于转染caspase-3基因的rCHO细胞密度(152%比142%)。尽管在BAX基因操作的细胞中细胞密度增加,但在caspase-3基因操作的细胞中EPO的产量更高(BAX操作的细胞增加了1.58倍,而caspase-3操作的细胞增加了1.70倍)。结论:我们的观察结果表明,使用CRISPR方法下调BAX和caspase-3基因,即使在存在凋亡诱导剂的情况下,也能抑制细胞凋亡并提高重组EPO的产量。此外,减少caspase-3的表达被证明比BAX更有效地延长细胞寿命和产生异源重组蛋白。
{"title":"Engineering of the Caspase-3 Gene in Recombinant CHO Cells Caused More Apoptosis Resistance and enhanced Recombinant Protein Production Than the BAX Gene.","authors":"Amirabbas Rahimi, Morteza Karimipoor, Reza Mahdian, Atefeh Alipour, Saadi Hosseini, Marzieh Mohammadi, Hooman Kaghazian, Hosein Shahsavarani, Mohammad Ali Shokrgozar","doi":"10.61882/ibj.4934","DOIUrl":"10.61882/ibj.4934","url":null,"abstract":"<p><strong>Background: </strong>BAX and caspase-3 are essential genes in the apoptotic pathway of cells, promoting the apoptotic cascade through different mechanisms. Inhibition of these genes can increase the longevity of cells in cell culture. This study aimed to compare the effects of clustered regularly interspaced short palindromic repeats-CRISPR-associated protein 9 (CRISPR-Cas9)-mediated knockdown of BAX and caspase-3 genes on apoptosis inhibition, cell lifespan, and erythropoietin (EPO) production in CHO cell lines.</p><p><strong>Methods: </strong>The BAX and caspase-3 gene expression was evaluated in the recombinant Chinese hamster ovary (rCHO) cell lines producing EPO using the CRISPR-Cas9 method. Their anti-apoptotic effects and the level of EPO expression were also compared. In addition, oleuropein (OP) as an apoptosis inducer, was introduced to the manipulated cell line to assess the stability and viability of the manipulated cell lines.</p><p><strong>Results: </strong>The rCHO cells with the manipulated BAX gene exhibited a higher cell density than those with the manipulated caspase-3 gene (152% vs. 142%). Despite the increased cell density in the cells with the BAX gene manipulation, EPO production was higher in the cells with the manipulated caspase-3 gene (1.58-fold increase in the BAX-manipulated cells compared to a 1.70-fold increase in the caspase-3-manipulated cells).</p><p><strong>Conclusion: </strong>Our observations suggest that the downregulation of the BAX and caspase-3 genes using the CRISPR method, inhibits apoptosis and enhances the yield of recombinant EPO, even in the presence of an apoptosis inducer. Additionally, reduction of caspase-3 expression was proved to be more effective than BAX in extending the lifespan of cells and producing heterologous recombinant proteins.</p>","PeriodicalId":14500,"journal":{"name":"Iranian Biomedical Journal","volume":"29 3","pages":"149-158"},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12396116/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144527985","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Antifungal Potential of Streptomyces-Derived Metabolites Against Fluconazole-Resistant Oral Candida albicans: In vitro Evaluation and Mechanistic Insights. 链霉菌衍生代谢物对氟康唑耐药口腔白色念珠菌的抗真菌潜力:体外评价和机制见解。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.4937
Mahtab Karami-Feli, Zahra Jahanshiri, Akram Sadeghi

Background: Oropharyngeal candidiasis, primarily caused by Candida albicans, is the most common opportunistic fungal infection in patients with head and neck cancer. The increasing emergence of fluconazole (FLZ) resistance has led to higher morbidity and mortality rates. Streptomyces, a genus of Actinomycetes, produces bioactive molecules with antimicrobial effects. This study investigated the antifungal potential of S. monomycini strain 615 against FLZ-resistant C. albicans clinical isolates in vitro.

Methods: S. monomycini strain 615 was cultured, and an aqueous crud extract containing its metabolites was prepared. The effects of extract were tested on five FLZ-resistant C. albicans isolates. Key pathogenic factors such as protease activity, biofilm formation, and gene expressions related to virulence (SAP1, SAP2, HWP1, and ERG11) and azole resistance (ERG11) were evaluated. Cytotoxicity of the extract (1.8-0.0008 µg/ml) was assessed on KYSE-30 esophageal epithelial cells using the MTT assay.

Results: Strain 615 showed strong antifungal activity with minimum inhibitory concentration (MIC) values of 0.0008-0.0035 µg/ml and minimum fungicidal concentration (MFC) values of 0.0017-0.0035 µg/ml after 48 hours. The extract significantly reduced ergosterol content by 31.81%, completely inhibited phospholipase and proteinase activities at 0.0035 µg/ml and suppressed biofilm formation at 0.0035-0.0140 µg/ml. Expression of all tested virulence genes decreased except for ERG11, indicating a possible mechanism to overcome azole resistance. The highest extract concentration caused 76.7% cytotoxicity in KYSE-30 cells after 72 hours.

Conclusion: S. monomycini strain 615 could serve as an alternative or adjunct therapy for FLZ-resistant oropharyngeal candidiasis in head and neck cancer patients, warranting further research to confirm safety and efficacy.

背景:口咽念珠菌病是头颈癌患者中最常见的机会性真菌感染,主要由白色念珠菌引起。越来越多的FLZ耐药性导致了更高的发病率和死亡率。链霉菌是放线菌的一种,产生具有抗菌作用的生物活性分子。本研究探讨了单胞菌615菌株对耐flz白色念珠菌临床分离株的体外抑菌潜力。方法:对单霉素615菌株进行培养,制备含其代谢产物的水提物。试验了提取物对5株耐flz白色念珠菌的作用。对关键致病因素如蛋白酶活性、生物膜形成、毒力相关基因表达(SAP1、SAP2、HWP1和ERG11)和唑抗性(ERG11)进行了评价。采用MTT法评估提取物(1.8 ~ 0.0008µg/ml)对KYSE-30食管上皮细胞的细胞毒性。结果:菌株615在48 h后表现出较强的抗真菌活性,MIC值为0.0008 ~ 0.0035µg/ml, MFC值为0.0017 ~ 0.0035µg/ml。在0.0035µg/ml浓度下,麦角甾醇含量显著降低31.81%,完全抑制磷脂酶和蛋白酶活性,0.0035 ~ 0.0140µg/ml浓度下,抑制生物膜的形成。除ERG11外,所有毒力基因表达均下降,提示其克服唑抗性的可能机制。最高提取物浓度对KYSE-30细胞72 h后的毒性为76.7%。结论:615单霉素菌株可作为flz耐药的头颈癌患者OPC的替代或辅助治疗,其安全性和有效性有待进一步研究证实。
{"title":"Antifungal Potential of Streptomyces-Derived Metabolites Against Fluconazole-Resistant Oral Candida albicans: In vitro Evaluation and Mechanistic Insights.","authors":"Mahtab Karami-Feli, Zahra Jahanshiri, Akram Sadeghi","doi":"10.61882/ibj.4937","DOIUrl":"10.61882/ibj.4937","url":null,"abstract":"<p><strong>Background: </strong>Oropharyngeal candidiasis, primarily caused by Candida albicans, is the most common opportunistic fungal infection in patients with head and neck cancer. The increasing emergence of fluconazole (FLZ) resistance has led to higher morbidity and mortality rates. Streptomyces, a genus of Actinomycetes, produces bioactive molecules with antimicrobial effects. This study investigated the antifungal potential of S. monomycini strain 615 against FLZ-resistant C. albicans clinical isolates in vitro.</p><p><strong>Methods: </strong>S. monomycini strain 615 was cultured, and an aqueous crud extract containing its metabolites was prepared. The effects of extract were tested on five FLZ-resistant C. albicans isolates. Key pathogenic factors such as protease activity, biofilm formation, and gene expressions related to virulence (SAP1, SAP2, HWP1, and ERG11) and azole resistance (ERG11) were evaluated. Cytotoxicity of the extract (1.8-0.0008 µg/ml) was assessed on KYSE-30 esophageal epithelial cells using the MTT assay.</p><p><strong>Results: </strong>Strain 615 showed strong antifungal activity with minimum inhibitory concentration (MIC) values of 0.0008-0.0035 µg/ml and minimum fungicidal concentration (MFC) values of 0.0017-0.0035 µg/ml after 48 hours. The extract significantly reduced ergosterol content by 31.81%, completely inhibited phospholipase and proteinase activities at 0.0035 µg/ml and suppressed biofilm formation at 0.0035-0.0140 µg/ml. Expression of all tested virulence genes decreased except for ERG11, indicating a possible mechanism to overcome azole resistance. The highest extract concentration caused 76.7% cytotoxicity in KYSE-30 cells after 72 hours.</p><p><strong>Conclusion: </strong>S. monomycini strain 615 could serve as an alternative or adjunct therapy for FLZ-resistant oropharyngeal candidiasis in head and neck cancer patients, warranting further research to confirm safety and efficacy.</p>","PeriodicalId":14500,"journal":{"name":"Iranian Biomedical Journal","volume":" ","pages":"126-137"},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12396118/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144093492","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Multifaceted Cooperation Between WNT and PI3K Signaling Axis through the Long Noncoding RNA SNHG16 and TCF7 in de novo Acute Lymphoblastic Leukemia Patients. 新发急性淋巴细胞白血病患者中WNT和PI3K信号轴通过长链非编码RNA SNHG16和TCF7的多方面合作
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.5031
Mohadeseh Khani, Atbin Latifi, Mohammad Sayyadi

Background: Acute lymphoblastic leukemia (ALL) is the most prevalent form of acute leukemia in children, arising from the known and unknown factors. This complexity has limited advancements in patient recovery. Recently, long noncoding RNAs lncRNA (lncRNA) molecules have emerged as significant but not fully understood players in leukemia research. Studies have indicated that c-Myc can stimulate and enhance gene expression through multiple pathways, particularly by activating the PI3K and WNT pathways. The present study investigated the expression levels of lncRNAs involved in the upstream regulation of the PI3K/WNT pathways in patients diagnosed with ALL.

Methods: This case-control cross-sectional study was conducted using RNA from blood samples. The study examined 36 patients with ALL and 36 healthy controls. The expression levels of SNHG16 and TCF7 lncRNAs and their target genes were determined using qRT-PCR.

Results: The expression of Akt, β-catenin and c-Myc genes in the patient group showed a significant increase compared to the control group (p < 0.05). The expression levels of SNHG16 and TCF7 were significantly elevated in ALL patients compared to the control group (p < 0.05). Furthermore, a significant positive correlation was observed between the expression levels of these two lncRNAs in the patient group (p < 0.05).

Conclusion: Our findings demonstrate that SNHG16 and TCF7 lncRNA may act as crucial regulators of the Akt and β-catenin in ALL, which in turn influence c-Myc expression levels in affected individuals. Further research is needed to better understand the molecular mechanisms underlying ALL, potentially leading to improved treatment and monitoring strategies for patients.

背景:急性淋巴细胞白血病是儿童急性白血病最常见的形式,由已知和未知的因素引起。这种复杂性限制了患者康复的进展。最近,lncRNA分子在白血病研究中发挥了重要作用,但尚未完全了解。研究表明,c-Myc可以通过多种途径刺激和增强基因表达,特别是通过激活PI3K和WNT途径。本研究探讨了ALL患者中参与PI3K/WNT通路上游调控的lncrna的表达水平。方法:本病例-对照横断面研究采用血液样本中的RNA。该研究调查了36名ALL患者和36名健康对照者。采用qRT-PCR检测SNHG16和TCF7 lncrna及其靶基因的表达水平。结果:与对照组相比,患者组Akt、β-catenin、c-Myc基因表达显著升高(p < 0.05)。与对照组相比,ALL患者SNHG16、TCF7表达水平显著升高(p < 0.05)。在患者组中,这两种lncrna的表达水平呈显著正相关(p < 0.05)。结论:我们的研究结果表明,SNHG16和TCF7 lncRNA可能是ALL中Akt和β-catenin的重要调节因子,进而影响患者c-Myc的表达水平。需要进一步的研究来更好地了解ALL的分子机制,从而有可能改善患者的治疗和监测策略。
{"title":"Multifaceted Cooperation Between WNT and PI3K Signaling Axis through the Long Noncoding RNA SNHG16 and TCF7 in de novo Acute Lymphoblastic Leukemia Patients.","authors":"Mohadeseh Khani, Atbin Latifi, Mohammad Sayyadi","doi":"10.61882/ibj.5031","DOIUrl":"10.61882/ibj.5031","url":null,"abstract":"<p><strong>Background: </strong>Acute lymphoblastic leukemia (ALL) is the most prevalent form of acute leukemia in children, arising from the known and unknown factors. This complexity has limited advancements in patient recovery. Recently, long noncoding RNAs lncRNA (lncRNA) molecules have emerged as significant but not fully understood players in leukemia research. Studies have indicated that c-Myc can stimulate and enhance gene expression through multiple pathways, particularly by activating the PI3K and WNT pathways. The present study investigated the expression levels of lncRNAs involved in the upstream regulation of the PI3K/WNT pathways in patients diagnosed with ALL.</p><p><strong>Methods: </strong>This case-control cross-sectional study was conducted using RNA from blood samples. The study examined 36 patients with ALL and 36 healthy controls. The expression levels of SNHG16 and TCF7 lncRNAs and their target genes were determined using qRT-PCR.</p><p><strong>Results: </strong>The expression of Akt, β-catenin and c-Myc genes in the patient group showed a significant increase compared to the control group \u0000(p < 0.05). The expression levels of SNHG16 and TCF7 were significantly elevated in ALL patients compared to the control group (p < 0.05). Furthermore, a significant positive correlation was observed between the expression levels of these two lncRNAs in the patient group (p < 0.05).</p><p><strong>Conclusion: </strong>Our findings demonstrate that SNHG16 and TCF7 lncRNA may act as crucial regulators of the Akt and β-catenin in ALL, which in turn influence c-Myc expression levels in affected individuals. Further research is needed to better understand the molecular mechanisms underlying ALL, potentially leading to improved treatment and monitoring strategies for patients.</p>","PeriodicalId":14500,"journal":{"name":"Iranian Biomedical Journal","volume":"29 3","pages":"104-113"},"PeriodicalIF":0.0,"publicationDate":"2025-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12558116/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144742104","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Atorvastatin-Loaded Carboxymethyl Cellulose-Gelatin Hydrogel: A Synergistic Strategy for Enhanced Wound Healing and Skin Tissue Regeneration. 阿托伐他汀注入羧甲基纤维素-明胶水凝胶:促进伤口愈合和皮肤组织再生的协同策略。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-05-01 DOI: 10.61882/ibj.5043
Seyed Reza Mousavi, Mojtaba Rashidi, Azam Khedri, Maryam Kouchak, Majid Salehi, Sepehr Zamani, Ghorban Mohammadzadeh

Background: Skin tissue engineering is an innovative alternative to traditional methods for addressing skin injuries. This study aimed to synthesize a hydrogel consisting of carboxymethyl cellulose (CMC) and gelatin (Gel) containing atorvastatin (ATR) with the potential to accelerate tissue regeneration and wound healing in an animal model.

Methods: Five unique formulations of hydrogel with different concentrations of ATR (0.1%, 0.5%, 1%, and 2% w/v) were synthesized using CMC-Gel. The structural characteristics of the hydrogels were assessed using SEM and FTIR spectroscopy. Additional evaluations carried out included swelling behavior, degradability, ATR release, compatibility, hemolytic activity, and the viability of NIH/3T3 fibroblast cells. The therapeutic effectiveness of these hydrogels in enhancing wound healing was investigated in an animal model by making a full-thickness skin incision in Wistar rats.

Results: The synthesized CMC-Gel scaffolds had a porous structure with interconnected pores measuring 103 ± 8.74 μm and the ability to enhance cell migration. The MTT analysis showed a concentration-dependent relationship between ATR and cell proliferation, among which, the desirable concentration was 0.1% w/v. Furthermore, increased ATR concentrations were associated with decreased dressing capacity for hemostasis and coagulation. In vivo studies revealed that all the hydrogel-treated groups significantly outperformed the control group in promoting wound closure rates. Remarkably, the CMC-Gel-ATR 0.1% group exhibited the highest rates of wound closure, re-epithelialization, and angiogenesis.

Conclusion: Our results suggest the CMC-Gel-ATR as a desirable wound dressing for clinical application due to its unique physicochemical properties and comprehensive biocompatibility in in vitro and in vivo investigations.

背景:皮肤组织工程是解决皮肤损伤的传统方法的一种创新选择。本研究的目的是合成一种由羧甲基纤维素(CMC)和含有阿托伐他汀(ATR)的明胶(Gel)组成的水凝胶,该水凝胶具有加速动物模型组织再生和伤口愈合的潜力。方法:采用CMC-Gel合成不同ATR浓度(0.1%、0.5%、1%、2% w/v)的5种独特的水凝胶配方。采用扫描电镜(SEM)和傅里叶变换红外光谱(FTIR)分析了水凝胶的结构特征。评估了它们的肿胀行为、降解性、ATR释放、相容性、溶血活性以及它们对NIH-3T3成纤维细胞活力的毒性作用。在Wistar大鼠皮肤全层切口动物模型中,研究了其促进伤口愈合的治疗效果。结果:合成的CMC-Gel支架具有孔径为103±8.74 μm的多孔结构,具有促进细胞迁移的能力。MTT分析显示,阿托伐他汀与细胞增殖呈剂量依赖关系,其理想浓度为0.1% w/v。此外,ATR浓度升高与敷料止血和凝血能力下降有关。体内研究显示,所有水凝胶处理组在促进伤口愈合率方面明显优于气体处理组。值得注意的是,CMC-Gel-ATR 0.1%组的伤口愈合、再上皮化和血管生成率最高。结论:CMC-Gel-ATR具有独特的理化性质和全面的生物相容性,可作为一种理想的伤口敷料应用于临床。
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Iranian Biomedical Journal
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