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Unraveling Leishmania major Metacyclogenesis: A Comprehensive Analysis of Transcriptomic and Metabolomic Profiles 解开利什曼原虫的主要元胞发生:转录组学和代谢组学的综合分析
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2025-01-01 DOI: 10.61882/ibj.4899
Mansour Aminzadeh, Fariborz Bahrami, Zeynab Piryaei, Mahdi Vasighi, Zahra Kalantari, Mohammad Arjmand, Soheila Ajdary

Background: Metacyclogenesis is a critical developmental process in the life cycle of Leishmania parasites, particularly in their transition from non-infective procyclic to infective metacyclic promastigotes. This transformation is closely linked to the metabolic adaptation of the parasite, optimizing its survival and study, we integrated metabolomics and transcriptomics data to gain deeper molecular mechanisms of Leishmania major metacyclogenesis.

Methods: The metabolic profiles of procyclic and metacyclic promastigotes were first identified using ¹H-NMR spectroscopy. Multivariate statistical analysis conducted to distinguish different metabolites between the two forms. Metabolic pathway analysis was performed using the KEGG database to identify the metabolic pathways that significantly altered and overrepresented in the metabolomic profile. Finally, the differential gene expression and pathway enrichment analyses were conducted on transcriptomic data retrieved from public repositories.

Result: Multivariate statistical analysis revealed that 44 metabolites and ten pathways were significantly different between the two forms. Transcriptome genes during metacyclogenesis. These genes underwent GO and KEGG pathway analyses, revealing upregulated GO categories in the metacyclic phase, including protein phosphorylation, ion transport, signal transduction, and phosphorylation reactions, as well as several downregulated GO categories. Integrating metabolomic and transcriptomic data demonstrated seven significantly different KEGG pathways between procyclic and metacyclic forms, including fructose and mannose, galactose, ascorbate and aldarate, arginine and proline, histidine, inositol phosphate, and pyruvate metabolism.

Conclusion: Our findings suggest distinct metabolic profiles and changes in gene expression associated with the transition from procyclic to metacyclic promastigotes. By integrating diverse omics data, we could identify more reliable altered pathways and biomarkers.

背景:超循环发生是利什曼原虫生命周期中一个关键的发育过程,特别是在它们从非感染性原循环原虫向感染性超循环原虫过渡的过程中。这种转化与寄生虫的代谢适应密切相关,优化其生存和研究,我们整合代谢组学和转录组学数据,以获得利什曼原虫主要元胞形成的更深层次的分子机制。方法:采用¹H-NMR技术首次鉴定原环和亚环promastigotes的代谢谱。进行多变量统计分析以区分两种形式的不同代谢物。使用KEGG数据库进行代谢途径分析,以确定代谢组学谱中显著改变和过度代表的代谢途径。最后,对从公共数据库检索的转录组数据进行差异基因表达和途径富集分析。结果:多因素统计分析显示,两种形态的44种代谢物和10种途径存在显著差异。元细胞发生过程中的转录组基因。对这些基因进行了GO和KEGG通路分析,揭示了在亚环期上调的GO类别,包括蛋白质磷酸化、离子转运、信号转导和磷酸化反应,以及几种下调的GO类别。综合代谢组学和转录组学数据显示,在原环和亚环形式之间,有7种显著不同的KEGG途径,包括果糖和甘露糖、半乳糖、抗坏血酸和醛酸盐、精氨酸和脯氨酸、组氨酸、磷酸肌醇和丙酮酸代谢。结论:我们的研究结果表明,不同的代谢谱和基因表达的变化与从原环到元环的转变有关。通过整合不同的组学数据,我们可以确定更可靠的改变途径和生物标志物。
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引用次数: 0
Immunogenic Potential of a Multi-Peptide Vaccine Construct Against Uropathogenic Escherichia coli-Associated Urinary Tract Infection. 针对尿路致病性大肠杆菌相关尿路感染的多肽疫苗结构的免疫原性潜力的设计和评估。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-30 DOI: 10.61882/ibj.5149
Saeide Mirsharifi, Mehri Habibi, Touraj Rahimi, Fatemeh Foroohi, Mohammad Reza Asadi Karam

Background: Urinary tract infection caused by uropathogenic E. coli (UPEC) is a common infectious disease. The growing frequency of antibiotic resistance highlights the need for alternative strategies, such as vaccines, to combat UTIs. This study aimed to evaluate the immunogenicity of a novel vaccine candidate targeting UPEC.

Methods: Different bioinformatics servers were used to design a vaccine candidate composed of PapG II and FimH antigens from UPEC, along with the N- (1-173) and C-terminal (401-495) domains of FliC from Salmonella typhimurium. The final construct was cloned into the pET28a vector, expressed, purified, and confirmed using SDS-PAGE and Western blotting. Mice were immunized with the recombinant protein, both with and without alum adjuvant, and antibody responses were measured using ELISA.

Results: The final vaccine construct included one domain of PapG II (81 aa) and FimH (83 aa). The conserved domains of FliC were incorporated into the construct. SDS-PAGE and Western blot confirmed the purification of the protein, with a size of 53 kDa. Immunization of mice with PapG.FimH.FliC protein induced significantly higher levels of serum IgG, IgG isotypes, IgA, as well as mucosal IgA and IgG responses compared to the controls (p < 0.05). The addition of alum to the protein significantly enhanced serum IgG1 and IgA and mucosal IgG, compared to the protein without alum (p < 0.05).

Conclusion: The vaccine construct induced significant humoral responses in the mouse model, suggesting its potential as a promising candidate against UPEC. However, additional experimental analyses are required to validate the efficacy of the vaccine construct.

背景:UPEC引起的尿路感染是一种常见的感染性疾病。抗生素耐药性的日益频繁突出表明,需要采取其他战略,如疫苗,来防治尿路感染。本研究旨在评价一种针对UPEC的新型候选疫苗的免疫原性。方法:利用不同的生物信息学服务器设计由UPEC中PapG II和FimH抗原以及鼠伤寒沙门氏菌中FliC的N-(1-173)和c -末端(401-495)结构域组成的候选疫苗。将最终构建物克隆到pET28a载体上,进行表达、纯化,并使用SDS-PAGE和Western blotting进行确认。用重组蛋白免疫小鼠(含和不含明矾佐剂),用ELISA法测定抗体反应。结果:最终构建的疫苗包含1个PapGⅱ结构域(81 aa)和1个FimH结构域(83 aa)。FliC的保守结构域被纳入到构建中。SDS-PAGE和Western blot证实了该蛋白的纯化,大小为53 kDa。用papg . fihm . flic蛋白免疫小鼠,血清IgG、IgG同型、IgA、黏膜IgA和IgG应答水平均显著高于对照组(p < 0.05)。与不添加明矾的蛋白相比,添加明矾显著提高了血清IgG1、IgA和黏膜IgG的水平(p < 0.05)。结论:该疫苗结构在小鼠模型中诱导了显著的体液反应,表明其有潜力成为抗UPEC的候选疫苗。然而,需要额外的实验分析来验证疫苗结构的有效性。
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024 铋、奥美拉唑、阿莫西林和环丙沙星治疗两周根除幽门螺杆菌的疗效与三种药物治疗比较
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Akbar Arjamandpour, Zahra Hojjaji, Sara Moslehi
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Artin Rahimi, Arash Pooladi
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Bahareh Moradi Lahbidi, Arezoo Jabbari, Azimeh Ghorbanian, Abbas Lalegani Dezaki
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Maryam Dalvand, Toomaj Sabooteh
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Negin Shahi, Mehraban Shahi, Nasrin Davaridolatabadi, Negar Shahi
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Houran Firouzian, Amirreza Ghafourian Pouladi Toosi, Masoomeh Hamdi Askarabad, Mahdi Zavvar
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Elham Mokhtari Amirmajdi, Shahryar Moeinirad, Maryam Boozari
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引用次数: 0
25th National and 11th International Annual Congress on Research and Technology of Iranian Medical Sciences Students, Urmia, Iran, 5-7 September, 2024. 第25届和第11届伊朗医学学生研究与技术国际年会,伊朗乌尔米娅,2024年9月5日至7日。
Q2 Biochemistry, Genetics and Molecular Biology Pub Date : 2024-12-01
Matin Masaeli, Mansoure Momen Heravi
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引用次数: 0
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Iranian Biomedical Journal
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