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Host Nuclear Genome Copy Number Variations Identify High-Risk Anal Precancers in People Living with HIV. 宿主核基因组拷贝数变异识别出艾滋病病毒感染者的高危肛门癌前病变。
Pub Date : 2024-04-15 DOI: 10.1097/QAI.0000000000003409
T. Mutetwa, Yuxin Liu, Richard Silvera, Michelle Evans, Michael Yurich, Joseph Tripodi, Issa Leonard, Jane Houldsworth, Zeynep Gümüş, Anne M. Bowcock, Keith Sigel, M. Gaisa, P. Polak
BACKGROUNDPeople living with HIV (PLWH) have substantially increased incidence of anal precancer and cancer. There are very little data regarding genomic disturbances in anal precancers among PLWH. Here, we identified specific chromosomal variants in anal squamous intraepithelial lesions.METHODSWe collected 63 anal biopsy specimens (27 low-grade intraepithelial lesions [LSIL] and 36 high-grade intraepithelial lesions [HSIL]) from PLWH obtained as part of anal cancer screening in our NYC-based health system. Data on patient demographics, anal cytological and high-risk human papillomavirus (HR-HPV) diagnoses were collected. Specimens were tested for a panel of chromosomal alterations associated with HPV-induced oncogenesis using Fluorescence In-Situ Hybridization (FISH) and analyses compared the associations of these alterations with clinical characteristics.RESULTSGains of 3q26, 5p15, 20q13 and cen7 were detected in 42%, 31%, 31%, and 19% of HSIL compared to 7%, 0%, 4%, and 0% of LSIL, respectively. Where at least one abnormality was seen, 89% had a 3q26 gain. In lesions with 5p15 gains, 20q13 gains co-occurred in 91% of cases, while cen7 gain only co-occurred with the other three alterations. Sensitivity and specificity of any alteration to predict HSIL was 47% (95% CI: 30-65%) and 93% (95% CI: 76%-99%) respectively.CONCLUSIONSGenomic alterations seen in HPV-associated cancers may help distinguish anal LSIL from HSIL. 3q26 amplification may be an early component of anal carcinogenesis, preceding 5p16, 20q13 and/or chr7.IMPACTWe share insights on potential genomic biomarkers for discriminating high-risk anal precancers.
背景艾滋病毒感染者(PLWH)的肛门癌前病变和癌症发病率大大增加。有关艾滋病病毒感染者肛门癌前病变基因组紊乱的数据非常少。我们收集了 63 份肛门活检标本(27 份低级别上皮内病变 [LSIL] 和 36 份高级别上皮内病变 [HSIL]),这些标本来自纽约市医疗系统中作为肛门癌筛查一部分的艾滋病感染者。我们收集了患者人口统计学、肛门细胞学和高危人乳头瘤病毒(HR-HPV)诊断数据。利用荧光原位杂交(FISH)技术检测标本中与HPV诱导致癌相关的一系列染色体改变,并分析比较这些改变与临床特征的关联。结果在42%、31%、31%和19%的HSIL中分别检测到3q26、5p15、20q13和cen7异常,而在LSIL中分别检测到7%、0%、4%和0%。在至少出现一种异常的病变中,89%为3q26增益。在5p15增益的病变中,91%的病例同时出现20q13增益,而cen7增益仅与其他三种改变同时出现。任何改变预测 HSIL 的敏感性和特异性分别为 47%(95% CI:30%-65%)和 93%(95% CI:76%-99%)。3q26 扩增可能是肛门癌变的早期组成部分,早于 5p16、20q13 和/或 chr7。
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引用次数: 0
Impact of COVID-19 on People Living with HIV: Data from Five Medical Monitoring Project Sites, 2020-2022. COVID-19 对艾滋病毒感染者的影响:2020-2022 年五个医疗监测项目点的数据。
Pub Date : 2024-04-02 DOI: 10.1097/QAI.0000000000003403
Steven J Erly, Tim W Menza, Lauren Granillo, Michael Navejas, C. Udeagu, Kathleen Brady A Md, Lindsay K Hixson, Shavvy Raj-Sing, Tanner Nassau, Chelsey Kaasa, Susan Buskin
BACKGROUNDThe COVID-19 pandemic disrupted global economic and healthcare systems. People living with HIV (PLWH) represent a marginalized and stigmatized population who may have been particularly impacted. The purpose of this analysis was to describe the impact of the COVID-19 pandemic on PLWH in the United States.SETTINGUnited States.METHODSWe analyzed surveys of behavioral and clinical characteristics of PLWH residing in five states that participated in the Medical Monitoring Project between 2020 and 2022. We described the impact of COVID-19 illness, testing and diagnoses, receipt of medical care, social service access, employment, and preventive measures by project site and demographic characteristics.RESULTSUnweighted data from 1715 PLWH were analyzed. A high proportion of PLWH had medical care disrupted by the pandemic; 31% of PLWH missed medical appointments, 26% missed routine labs, and 7% missed antiretroviral therapy doses. 30% of PLWH reported losing wages and 19% reported difficulty in accessing social services. Overall, 88% reported receiving at least one dose of COVID-19 vaccine, but vaccine uptake was low among younger, Black and Hispanic or Latina/o/x PLWH.CONCLUSIONThis descriptive analysis reinforces previous findings that show that COVID-19 negatively impacted PLWH and their ability to obtain medical care. Additional efforts will be critical to ameliorating the longer-term impacts of COVID-19 on the health of PLWH and supporting PLWH through future pandemics and healthcare system disruptions.
背景 COVID-19 大流行扰乱了全球经济和医疗保健系统。艾滋病病毒感染者(PLWH)是被边缘化和被污名化的人群,他们受到的影响可能尤为严重。本分析旨在描述 COVID-19 大流行对美国 PLWH 的影响。方法 我们分析了对 2020 年至 2022 年期间居住在参与医疗监测项目的五个州的 PLWH 的行为和临床特征的调查。我们按项目地点和人口特征描述了 COVID-19 疾病、检测和诊断、接受医疗护理、获得社会服务、就业和预防措施的影响。结果 分析了来自 1715 名 PLWH 的未加权数据。很大比例的 PLWH 因大流行病而中断了医疗服务;31% 的 PLWH 错过了医疗预约,26% 错过了常规化验,7% 错过了抗逆转录病毒治疗剂量。30%的 PLWH 报告称失去了工资,19% 报告称难以获得社会服务。总体而言,88%的 PLWH 报告至少接种了一剂 COVID-19 疫苗,但年轻、黑人和西班牙裔或拉丁裔/o/x PLWH 的疫苗接种率较低。要减轻 COVID-19 对 PLWH 健康的长期影响,并在未来的流行病和医疗保健系统混乱时为 PLWH 提供支持,还需做出更多努力。
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引用次数: 0
HIV-exposed, uninfected infants in Uganda experience poorer growth and body composition trajectories than HIV-unexposed infants. 在乌干达,与未感染艾滋病毒的婴儿相比,暴露于艾滋病毒的未感染婴儿的生长和身体成分轨迹较差。
Pub Date : 2020-05-29 DOI: 10.1093/cdn/nzaa054_095
Charlotte E Lane, E. Widen, Shalean M. Collins, S. Young
BACKGROUNDHIV-uninfected infants of HIV-positive women may experience worse growth and health outcomes than infants of HIV-negative women, but this has not been thoroughly investigated under the WHO's most recent recommendations to reduce vertical transmission.OBJECTIVETo determine if HIV-exposed and -uninfected (HEU) infants whose mothers received Option B+ have higher odds of experiencing suboptimal growth trajectories than HIV-unexposed, -uninfected infants and if this relationship is affected by food insecurity.DESIGNRepeated anthropometric measures were taken on 238 infants (HEU=86) at 1 week and 1,3,6,9, and 12 months after delivery in Gulu, Uganda. Latent class growth mixture modeling was used to develop trajectories for length-for-age z-scores (LAZ), weight-for-length z-scores, mid-upper arm circumference (MUAC), sum of skinfolds, and arm fat area. Multinomial logistic models were built to predict odds of trajectory class membership, controlling for socioeconomic factors.RESULTSHEU infants had greater odds of being in the shortest two LAZ trajectory classes (OR=3.80[1.22,11.82], OR=8.72 [1.80,42.09]) and higher odds of being in smallest sum of skinfolds trajectory class (OR=3.85[1.39,10.59]) vs. unexposed infants. Among HEU infants, increasing food insecurity was associated with lower odds of being in the lowest sum of skinfolds class (OR=0.86[0.76,0.98]).CONCLUSIONSThere continues to be differences in growth patterns by HIV-exposure under the new set of WHO guidelines for the prevention of mother-to-child transmission of HIV and the feeding of HEU infants in low-resource settings that are not readily identified through traditional mixed effects modeling. Food insecurity was not associated with class membership, but differentially affected adiposity by HIV-exposure status.
背景HIV 阳性妇女的未感染婴儿的生长和健康状况可能比 HIV 阴性妇女的婴儿更差,但根据世界卫生组织最近提出的减少垂直传播的建议,尚未对此进行深入研究。设计在乌干达古卢对 238 名婴儿(HEU=86 名)在产后 1 周、1、3、6、9 和 12 个月进行了重复人体测量。采用潜类生长混合模型建立了身长与年龄Z值(LAZ)、体重与身长Z值、中上臂围(MUAC)、皮褶总和和手臂脂肪面积的轨迹。在控制社会经济因素的情况下,建立了多叉逻辑模型来预测轨迹等级成员的几率。结果与未暴露婴儿相比, HEU 婴儿进入最短两个 LAZ 轨迹等级的几率更大(OR=3.80[1.22,11.82], OR=8.72 [1.80,42.09]),进入最小皮褶总和轨迹等级的几率更高(OR=3.85[1.39,10.59])。结论:根据世界卫生组织预防母婴传播艾滋病的新指南,在低资源环境中喂养 HEU 婴儿时,HIV 暴露婴儿的生长模式仍存在差异,而传统的混合效应模型无法轻易识别这些差异。粮食不安全与班级成员资格无关,但会因艾滋病毒暴露状况的不同而对脂肪含量产生不同影响。
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引用次数: 8
Nucleotide binding by the HIV-1 integrase protein in vitro. HIV-1整合酶蛋白在体外的核苷酸结合。
J R Lipford, S T Worland, C M Farnet

Recombinant human immunodeficiency virus type 1 (HIV-1) integrase was shown to bind ATP and other nucleoside triphosphates and nucleotide analogs in vitro. Cross-linking of ATP and the photoaffinity analog 8-azido-ATP to integrase occurred in a UV dose-dependent manner. Covalent binding of ATP to integrase was also achieved without UV irradiation when the nucleotide was oxidized to the 2',3'-dialdehyde derivative (oxidized ATP) prior to incubation with the protein, indicating the presence of a reactive lysine residue in the nucleotide binding region of the protein. A number of experimental observations indicate that nucleotides and DNA substrates bind at the same or overlapping site(s) on the integrase protein. For example, the binding of nucleotides or nucleotide analogs to integrase was blocked by prior incubation with DNA substrates, and the covalent cross-linking of 8-azido-ATP to integrase inhibited the DNA binding and oligonucleotide cleavage activities of the protein. Oxidized ATP inhibited the oligonucleotide cleavage activity of integrase at concentrations that had no effect on DNA binding, suggesting that oxidized nucleotides may specifically target the catalytic center of the enzyme. These studies indicate that nucleotide analogs may serve as probes for the DNA binding and catalytic sites of the enzyme and may serve as models for the design of active site inhibitors of retroviral integrase.

重组人类免疫缺陷病毒1型(HIV-1)整合酶在体外被证明可以结合ATP和其他三磷酸核苷和核苷酸类似物。ATP和光亲和类似物8-叠氮-ATP与整合酶的交联以紫外线剂量依赖的方式发生。当核苷酸在与蛋白质孵育之前被氧化为2',3'-双醛衍生物(氧化ATP)时,ATP与整合酶的共价结合也在没有紫外线照射的情况下实现,这表明在蛋白质的核苷酸结合区域存在活性赖氨酸残基。许多实验观察表明,核苷酸和DNA底物在整合酶蛋白上的相同或重叠位点结合。例如,核苷酸或核苷酸类似物与整合酶的结合被事先与DNA底物孵育阻断,8-叠氮- atp与整合酶的共价交联抑制了DNA结合和蛋白质的寡核苷酸裂解活性。氧化的ATP在不影响DNA结合的浓度下抑制整合酶的寡核苷酸裂解活性,表明氧化的核苷酸可能特异性靶向酶的催化中心。这些研究表明,核苷酸类似物可以作为酶的DNA结合位点和催化位点的探针,并可以作为设计逆转录病毒整合酶活性位点抑制剂的模型。
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引用次数: 0
Antiretroviral therapy is associated with a decrease in unintegrated HIV-1 DNA in pediatric patients. 抗逆转录病毒治疗与儿科患者未整合HIV-1 DNA的减少有关。
R M Donovan, C E Bush, S M Smereck, E Moore, F Cohen, L D Saravolatz

Good markers for monitoring the efficacy of antiretroviral therapy in children do not currently exist. This study examined the effect of antiretroviral therapy on human immunodeficiency virus (HIV-1) unintegrated DNA (uDNA), integrated DNA (iDNA), percent uDNA, immune complex dissociated (ICD) p24 antigenemia, and plasma viral titer. Seven children were followed at therapy initiation and at approximately 3- and 10-month intervals. HIV-1 uDNA was detected in all children prior to start of therapy (average percent uDNA, 43%). At 3 months, the percent HIV uDNA decreased in all patients to an average of 18% (p = 0.01) and at 10 months decreased to an average of 1%. In contrast, the amount of HIV iDNA was relatively constant after initiation of therapy. ICD HIV p24 antigen was detected in all patients prior to therapy (average, 538 pg/ml). Over the study period, the ICD p24 antigen level decreased in three patients and remained relatively unchanged in four patients. Plasma cultures of HIV-1 were positive in only one of the seven patients prior to therapy. Among the methods evaluated, measurement of uDNA was the only parameter which reliable decreased after initiation of nucleoside therapy.

目前尚不存在用于监测儿童抗逆转录病毒治疗疗效的良好标志物。本研究检测了抗逆转录病毒治疗对人类免疫缺陷病毒(HIV-1)未整合DNA (uDNA)、整合DNA (iDNA)、uDNA百分比、免疫复合物解离(ICD) p24抗原血症和血浆病毒滴度的影响。7名儿童在治疗开始时和大约3个月和10个月的间隔进行随访。治疗开始前,所有儿童均检测到HIV-1 uDNA(平均百分比uDNA, 43%)。3个月时,所有患者的HIV - uDNA百分比平均下降到18% (p = 0.01), 10个月时平均下降到1%。相比之下,HIV dna的数量在治疗开始后相对稳定。治疗前,所有患者均检测到ICD HIV p24抗原(平均538 pg/ml)。在研究期间,3例患者的ICD p24抗原水平下降,4例患者保持相对不变。在接受治疗前,7名患者中只有1人的血浆HIV-1培养呈阳性。在评估的方法中,uDNA的测定是唯一可靠的参数,在核苷治疗开始后下降。
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引用次数: 0
Changes in HIV risk behavior among French heterosexuals: patterns of sexual monogamy and condom use between 1988 and 1991. 法国异性恋者艾滋病风险行为的变化:1988年至1991年间的一夫一妻制和避孕套使用模式。
Pub Date : 1994-12-01 DOI: 10.1097/00126334-199412000-00015
M Guiguet, F LePont, O Retel, A J Valleron
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引用次数: 4
Trends in risk behavior and HIV seroprevalence in heterosexual injection drug users in San Francisco, 1986-1992. 1986-1992年旧金山异性注射吸毒者的危险行为和HIV血清流行趋势。
J K Watters

We examine changes and stability in risk behaviors and HIV-1 seroprevalence among heterosexual injection drug users (IDUs) over 13 cross-sectional surveys, 1986-1992. Interviews (n = 5,956) were conducted with IDUs in street settings and drug detoxification clinics over 6.5 years, and respondents were tested for HIV-1 antibody. Trends in use of condoms and bleach and HIV seroprevalence were assessed using multiple logistic and linear regression analyses. The percentage of time condoms were reportedly used during intercourse among men increased from 4.5% to 31.0%. Among the declining population of IDUs who reported needle sharing, reported use of bleach increased from 3% to 89%. Significant changes in use of bleach 100% of the time were reported: 29.8% in 1988, 52.8% in 1990, and 40.0% in 1992. HIV seroprevalence doubled from 7% in 1986 to 14% in 1987. Post-1987 fluctuations in HIV seroprevalence were not significant. Significant changes in risk behaviors among IDUs were reported over the study period. These changes coincided with the implementation of HIV prevention in San Francisco, including outreach programs, HIV testing and counseling, bleach distribution, and syringe exchange. The moderate and stable rate of HIV seroprevalence beginning in 1987 parallels self-reported reductions in risk behavior.

在1986-1992年的13项横断面调查中,我们研究了异性注射吸毒者(IDUs)的危险行为和HIV-1血清阳性率的变化和稳定性。在6.5年的时间里,对街头和戒毒诊所的注射吸毒者进行了访谈(n = 5,956),并对受访者进行了HIV-1抗体检测。使用多重逻辑分析和线性回归分析评估了安全套和漂白剂的使用趋势和艾滋病毒血清阳性率。据报道,男性在性交过程中使用避孕套的比例从4.5%上升到31.0%。在报告共用针头的注射吸毒者中,报告使用漂白剂的人数从3%增加到89%。漂白剂使用率100%发生了显著变化:1988年为29.8%,1990年为52.8%,1992年为40.0%。艾滋病毒的血清患病率从1986年的7%增加到1987年的14%。1987年后艾滋病毒血清阳性率波动不显著。据报道,在研究期间,注射吸毒者的危险行为发生了重大变化。这些变化与旧金山艾滋病毒预防的实施相一致,包括外展项目、艾滋病毒检测和咨询、漂白剂分发和注射器交换。1987年开始的艾滋病毒血清流行率的适度和稳定与自我报告的危险行为的减少相一致。
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引用次数: 0
HTLV-I-associated myelopathy in Venezuela. 委内瑞拉htlv - 1相关脊髓病
Pub Date : 1994-12-01 DOI: 10.1097/00126334-199412000-00014
M Zabaleta, J Peralta, J Birges, N Bianco, G Echeverria de Perez
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引用次数: 6
Improved detection of HTLV-II antibody using a whole viral lysate-based EIA. 利用基于全病毒裂解物的EIA改进了HTLV-II抗体的检测。
Pub Date : 1994-12-01 DOI: 10.1097/00126334-199412000-00016
R L Kline, D Vlahov, T C Quinn
{"title":"Improved detection of HTLV-II antibody using a whole viral lysate-based EIA.","authors":"R L Kline,&nbsp;D Vlahov,&nbsp;T C Quinn","doi":"10.1097/00126334-199412000-00016","DOIUrl":"https://doi.org/10.1097/00126334-199412000-00016","url":null,"abstract":"","PeriodicalId":14827,"journal":{"name":"Journal of acquired immune deficiency syndromes","volume":"7 12","pages":"1291-2"},"PeriodicalIF":0.0,"publicationDate":"1994-12-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://sci-hub-pdf.com/10.1097/00126334-199412000-00016","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"18960778","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 6
Absence of GVH diseases in AIDS. 艾滋病患者中没有GVH疾病。
J A Habeshaw, A G Dalgleish, E F Hounsell
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引用次数: 0
期刊
Journal of acquired immune deficiency syndromes
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