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NKX2-1 gene variants in solid tumours: the spectrum of gene variants and potential impact in surgical pathology diagnosis. 实体瘤中的 NKX2-1 基因变异:基因变异谱及对外科病理诊断的潜在影响。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209860
Ju-Yoon Yoon, Farah El-Sharkawy Navarro, Qiang Ding, Jason Rosenbaum, Salvatore Priore
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引用次数: 0
Low-positive controls for monitoring progesterone receptor immunohistochemical staining. 监测孕酮受体免疫组化染色的低阳性对照。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209902
Yu-Hsun Lin, Jen-Fan Hang, Ching-Fen Yang, Chih-Yi Hsu

Aims: Progesterone receptor (PR) is a crucial prognostic marker in breast cancer. However, achieving consistent results in PR immunohistochemistry (IHC) remains challenging due to the lack of well-defined low-positive controls. This study aimed to identify benign tissues with consistent low-level PR expression to serve as ideal controls for IHC.

Methods: We evaluated PR expression in the squamous epithelium of the uterine cervix, nipple smooth muscle and pancreatic islets. QuPath digital image analysis was employed to compare the intensity and quantity of PR staining in target cells within a 2×2 mm area.

Results: The squamous epithelium of the secretory phase cervix, nipple smooth muscle and pancreatic islets displayed appreciable weak PR expression, with mean values of 73, 55 and 60 cells, respectively. Notably, 62% (8/13) of the 2×2 mm areas in the atrophic cervix were completely negative for PR expression. The coefficients of variation for weak PR-expressing cells in pancreatic islets (57.4%) and nipple smooth muscle (65.0%) were lower than those observed in the cervix (96.2%-222.0%). The squamous epithelium of the cervix, especially during the secretory phase, exhibited weak positivity confined to the basal layers, providing another viable control option. However, variations in PR expression may be influenced by physiological factors, such as hormonal fluctuations.

Conclusions: Pancreatic islets and nipple smooth muscle, with their consistent low-level PR expression, offer a promising solution to the challenges associated with PR IHC. This approach may help minimise variations resulting from differing staining methods across laboratories.

目的:孕激素受体(PR)是乳腺癌预后的重要指标。然而,由于缺乏明确的低阳性对照,在PR免疫组织化学(IHC)中获得一致的结果仍然具有挑战性。本研究旨在鉴定具有一致的低水平PR表达的良性组织,作为IHC的理想对照。方法:观察PR在宫颈鳞状上皮、乳头平滑肌和胰岛组织中的表达。采用QuPath数字图像分析比较2×2 mm范围内靶细胞PR染色的强度和数量。结果:分泌期宫颈鳞状上皮、乳头平滑肌和胰岛均有明显的弱PR表达,平均分别为73、55和60个细胞。62%(8/13)萎缩宫颈2×2 mm区PR表达完全阴性。胰岛(57.4%)和乳头平滑肌(65.0%)弱pr表达细胞的变异系数低于宫颈(96.2% ~ 222.0%)。宫颈的鳞状上皮,特别是在分泌期,表现出局限于基底层的弱阳性,这提供了另一种可行的控制选择。然而,PR表达的变化可能受到生理因素的影响,如激素波动。结论:胰岛和乳头平滑肌具有一致的低水平PR表达,为PR IHC相关的挑战提供了一个有希望的解决方案。这种方法可以帮助减少不同实验室染色方法的差异。
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引用次数: 0
Diagnostic challenges of the idiopathic plasmacytic lymphadenopathy (IPL) subtype of idiopathic multicentric Castleman disease (iMCD): Factors to differentiate from IgG4-related disease. 特发性多中心卡斯特曼病(iMCD)的特发性浆细胞性淋巴腺病(IPL)亚型的诊断难题:与IgG4相关疾病相鉴别的因素。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2023-209280
Asami Nishikori, Midori Filiz Nishimura, David C Fajgenbaum, Yoshito Nishimura, Kanna Maehama, Tomoka Haratake, Tetsuya Tabata, Mitsuhiro Kawano, Naoya Nakamura, Shuji Momose, Remi Sumiyoshi, Tomohiro Koga, Hidetaka Yamamoto, Frits van Rhee, Atsushi Kawakami, Yasuharu Sato

Aims and methods: Idiopathic multicentric Castleman disease (iMCD) is currently considered to be classified into three clinical subtypes, including idiopathic plasmacytic lymphadenopathy (IPL), thrombocytopaenia, anasarca, fever, reticulin fibrosis/renal dysfunction, organomegaly (TAFRO) and not otherwise specified (NOS). Among the three, iMCD-IPL closely mimics IgG4-related disease (IgG4-RD). In diagnosing IgG4-RD, it is sometimes challenging to distinguish iMCD-IPL patients that also meet the histological diagnostic criteria for IgG4-RD. In this study, we focused on the number of IgG4-positive cells in the lymph nodes and analysed the relationship with laboratory findings to distinguish iMCD-IPL from IgG4-RD. Thirty-nine patients with iMCD-IPL and 22 patients with IgG4-RD were included.

Results: Among the cases considered to be iMCD-IPL, 33.3% (13/39) cases also met the histological diagnostic criteria for IgG4-RD and serum IgG4 levels were not different between the two groups. However, the serum IgG4/IgG ratio was significantly higher in IgG4-RD, with a cut-off value of 19.0%. Additionally, a significant positive correlation between serum IgG levels and the number of IgG4-positive cells was observed in iMCD-IPL (p=0.001). The serum IgG cut-off value for distinguishing iMCD-IPL meeting histological criteria for IgG4-RD from other iMCD-IPL was 5381 mg/dL.

Conclusions: iMCD-IPL cases with high serum IgG levels (>5000 mg/dL) were likely to meet the diagnostic criteria for IgG4-RD because of the numerous IgG4-positive cells observed. A combination of clinical presentations, laboratory values including the serum IgG4/IgG ratios and histological analysis is crucial for diagnosis of IgG4-RD and iMCD-IPL.

目的和方法:特发性多中心卡斯特曼病(iMCD)目前被认为可分为三种临床亚型,包括特发性浆细胞性淋巴结病(IPL)、血小板减少症、贫血、发热、网状纤维化/肾功能障碍、器官肥大(TAFRO)和未另作说明(NOS)。在这三种疾病中,iMCD-IPL 与 IgG4 相关疾病(IgG4-RD)相似。在诊断 IgG4-RD 时,有时很难区分同时符合 IgG4-RD 组织学诊断标准的 iMCD-IPL 患者。在本研究中,我们重点研究了淋巴结中 IgG4 阳性细胞的数量,并分析了其与实验室检查结果的关系,以区分 iMCD-IPL 和 IgG4-RD。研究共纳入 39 例 iMCD-IPL 患者和 22 例 IgG4-RD 患者:结果:在被认为是 iMCD-IPL 的病例中,33.3%(13/39)的病例也符合 IgG4-RD 的组织学诊断标准,两组患者的血清 IgG4 水平没有差异。但是,IgG4-RD 患者的血清 IgG4/IgG 比值明显较高,临界值为 19.0%。此外,在 iMCD-IPL 中观察到血清 IgG 水平与 IgG4 阳性细胞数量之间存在明显的正相关性(p=0.001)。结论:血清 IgG 水平较高(>5000 mg/dL)的 iMCD-IPL 病例很可能符合 IgG4-RD 的诊断标准,因为观察到大量 IgG4 阳性细胞。结合临床表现、实验室值(包括血清 IgG4/IgG 比值)和组织学分析是诊断 IgG4-RD 和 iMCD-IPL 的关键。
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引用次数: 0
Prognostic value of immunohistochemical markers of intratumoral hypoxia in pregnancy-associated breast cancer. 妊娠相关乳腺癌肿瘤内缺氧免疫组化标志物的预后价值。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-210002
Carsten F J Bakhuis, Paul J van Diest, Britt B M Suelmann, Natalie D Ter Hoeve, Sven van Kempen, Pieter J Westenend, Sabine C Linn, Elsken van der Wall, Carmen van Dooijeweert

Aims: Breast cancer (BC) during pregnancy (PrBC) and the postpartum period (PPBC) often exhibits more aggressive tumour characteristics and is associated with a poorer prognosis compared with age-matched nonpregnant patients with BC. The underlying mechanisms for this increased aggressiveness remain unresolved. Intratumoral hypoxia, a known adverse prognostic marker in nonpregnant BC, has not yet been studied in PrBC/PPBC. This is particularly intriguing due to the potential exposure to angiogenesis-stimulating factors during pregnancy, which may influence tumour behaviour.

Methods: Tumour tissues from 148 patients with PrBC and 45 patients with PPBC were used to create a tissue microarray (TMA), and clinical and outcome data were obtained. The TMAs were stained for hypoxia-associated protein markers: glucose transporter-1, carbonic anhydrase IX and hypoxia-inducible factor-1α.

Results: Of all 193 tumours, 152 (79%) expressed at least one of these proteins indicative of intratumoral hypoxia. The presence of intratumoral hypoxia was associated with a higher histological grade (83% grade III vs 63%) and frequent hormone receptor negativity (68% vs 39%). In a multivariable analysis, the presence of intratumoral hypoxia indicated a significantly worse prognosis (HR 2.532, 95% CI 1.1 to 5.7) for patients with PrBC and PPBC.

Conclusion: This unique study, the first in patients with PrBC and PPBC, showed that, despite their likely exposure to angiogenesis-stimulating factors, intratumoral hypoxia is frequent and affects 79% of patients. Importantly, patients with tumours overexpressing hypoxia markers have significantly worse survival. This suggests that hypoxia may be an important mechanism in carcinogenesis and clinical behaviour of PrBC and PPBC.

目的:与年龄匹配的非妊娠乳腺癌患者相比,妊娠期(PrBC)和产后(PPBC)乳腺癌(BC)通常表现出更具侵袭性的肿瘤特征,且预后较差。这种侵略性增强的潜在机制仍未得到解决。肿瘤内缺氧是已知的非妊娠BC的不良预后标志物,但尚未在PrBC/PPBC中进行研究。这是特别有趣的,因为在怀孕期间可能暴露于血管生成刺激因素,这可能会影响肿瘤的行为。方法:利用148例PrBC患者和45例PPBC患者的肿瘤组织构建组织微阵列(TMA),获取临床和预后数据。对tma进行缺氧相关蛋白标记:葡萄糖转运蛋白-1、碳酸酐酶IX和缺氧诱导因子-1α染色。结果:在所有193个肿瘤中,152个(79%)表达至少一种这些蛋白,表明肿瘤内缺氧。肿瘤内缺氧的存在与较高的组织学分级(III级83%对63%)和频繁的激素受体阴性(68%对39%)相关。在一项多变量分析中,对于PrBC和PPBC患者,肿瘤内缺氧的存在表明预后明显较差(HR 2.532, 95% CI 1.1至5.7)。结论:这项独特的研究,首次在PrBC和PPBC患者中进行,表明尽管他们可能暴露于血管生成刺激因子,但肿瘤内缺氧是常见的,并影响了79%的患者。重要的是,肿瘤过表达缺氧标志物的患者生存率明显较差。这提示缺氧可能是PrBC和PPBC的癌变和临床行为的重要机制。
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引用次数: 0
Using decision support platforms to enhance cancer diagnostics: the importance of vigilance and wise decision-making. 利用决策支持平台加强癌症诊断:警惕和明智决策的重要性。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209706
Hyunji Kim, Kyoung Un Park
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引用次数: 0
Improving transparency in publishing: gaps in standardised reporting across surgical pathology and laboratory medicine journals. 提高出版透明度:外科病理学和实验室医学期刊标准化报告的差距。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209858
Griffin Hughes, Cameron O'Brien, Reece Anderson, Matt Vassar

Aims: Research reporting checklists are itemised writing standards to improve transparency and facilitate reproducibility. Previous assessments of their recommendation or requirement have demonstrated improved checklist adherence across medical specialties and study designs. Here, we investigated the endorsement of reporting checklists within pathology, laboratory medicine and forensic science journals.

Methods: We queried Google Scholar Metrics and the Scopus CiteScore tool to identify top pathology and forensic medicine journals. Two authors independently assessed for the mention, recommendation or requirement or checklists-derived from the Enhancing the Quality and Transparency Of Health Research (EQUATOR) network-as well as study preregistration within each journal's aims and instructions for authors. Journal editors were contacted by one author every 3 weeks to confirm whether or not certain study designs would be considered for publication.

Results: Of the 88 journals evaluated, most did not mention or endorse the EQUATOR Network (73.9%) or International Committee of Medical Journal Editors reporting standards (51.1%). The most commonly reported checklists included Animal Research: Reporting of In Vivo Experiments (38.6%), Consolidated Standards of Reporting Trials (28.4%) and Preferred Reporting Items for Systematic Reviews and Meta-Analyses (25.0%). The CARE reporting checklist for case reports was required most often by five journals (5.7%). The final email response from journal editors and contacts was 9.1%.

Conclusions: Reporting checklists were suboptimally mentioned and rarely required. Even with many basic and diagnostic science reporting checklists and initiatives, endorsement remains low. We recommend that authors, reviewers and editors become familiar with relevant reporting checklists for their fields and publishing spaces to improve checklist visibility and adherence for scientific transparency, reproducibility and rigour.

目的:研究报告核对表是逐项编写标准,以提高透明度和促进可重复性。先前对他们的建议或要求的评估表明,在医学专业和研究设计中,检查表的依从性得到了改善。在此,我们调查了病理学、检验医学和法医学期刊对报告清单的认可。方法:我们通过谷歌Scholar Metrics和Scopus CiteScore工具来筛选顶级病理学和法医学期刊。两位作者独立评估了提及、推荐或要求或清单,这些清单来自于提高健康研究的质量和透明度(EQUATOR)网络,以及每个期刊的目标和作者指导下的研究预注册。每3周由一位作者联系期刊编辑,以确认是否考虑发表某些研究设计。结果:在被评估的88种期刊中,大多数没有提及或认可EQUATOR网络(73.9%)或国际医学期刊编辑委员会报告标准(51.1%)。最常见的报告清单包括动物研究:体内实验报告(38.6%)、试验报告综合标准(28.4%)和系统评价和荟萃分析首选报告项目(25.0%)。5家期刊最常使用病例报告的CARE报告清单(5.7%)。来自期刊编辑和联系人的最终电子邮件回复为9.1%。结论:报告核对表未被提及,很少被要求。即使有许多基础和诊断科学报告清单和倡议,认可仍然很低。我们建议作者、审稿人和编辑熟悉各自领域和出版空间的相关报告清单,以提高清单的可见性和依从性,从而提高科学透明度、可重复性和严谨性。
{"title":"Improving transparency in publishing: gaps in standardised reporting across surgical pathology and laboratory medicine journals.","authors":"Griffin Hughes, Cameron O'Brien, Reece Anderson, Matt Vassar","doi":"10.1136/jcp-2024-209858","DOIUrl":"10.1136/jcp-2024-209858","url":null,"abstract":"<p><strong>Aims: </strong>Research reporting checklists are itemised writing standards to improve transparency and facilitate reproducibility. Previous assessments of their recommendation or requirement have demonstrated improved checklist adherence across medical specialties and study designs. Here, we investigated the endorsement of reporting checklists within pathology, laboratory medicine and forensic science journals.</p><p><strong>Methods: </strong>We queried Google Scholar Metrics and the Scopus CiteScore tool to identify top pathology and forensic medicine journals. Two authors independently assessed for the mention, recommendation or requirement or checklists-derived from the Enhancing the Quality and Transparency Of Health Research (EQUATOR) network-as well as study preregistration within each journal's aims and instructions for authors. Journal editors were contacted by one author every 3 weeks to confirm whether or not certain study designs would be considered for publication.</p><p><strong>Results: </strong>Of the 88 journals evaluated, most did not mention or endorse the EQUATOR Network (73.9%) or International Committee of Medical Journal Editors reporting standards (51.1%). The most commonly reported checklists included Animal Research: Reporting of In Vivo Experiments (38.6%), Consolidated Standards of Reporting Trials (28.4%) and Preferred Reporting Items for Systematic Reviews and Meta-Analyses (25.0%). The CARE reporting checklist for case reports was required most often by five journals (5.7%). The final email response from journal editors and contacts was 9.1%.</p><p><strong>Conclusions: </strong>Reporting checklists were suboptimally mentioned and rarely required. Even with many basic and diagnostic science reporting checklists and initiatives, endorsement remains low. We recommend that authors, reviewers and editors become familiar with relevant reporting checklists for their fields and publishing spaces to improve checklist visibility and adherence for scientific transparency, reproducibility and rigour.</p>","PeriodicalId":15391,"journal":{"name":"Journal of Clinical Pathology","volume":" ","pages":"37-42"},"PeriodicalIF":2.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"144078351","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Carcinoma arising in microglandular adenosis of the breast: clinicopathological and genetic analysis. 乳腺微腺腺病引起的癌:临床病理和遗传分析。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209833
Qiang Zhang, Yanping Li, Bao-Hua Yu, Rui Bi, Xiaoli Xu, Yufan Cheng, Wentao Yang, Ruohong Shui

Aims: To study the clinicopathological, immunohistochemical and molecular features of carcinoma arising in microglandular adenosis (MGACA) of the breast.

Methods: Clinicopathological features of 13 cases of MGACA were analysed. All tumours were molecular subtype by immunohistochemistry (IHC) of AR, CD8, FOXC1 and DCLK1 expression. Next-generation sequencing including 511 genes was analysed.

Results: All tumours showed a histological spectrum ranging from microglandular adenosis (MGA) to atypical MGA (AMGA), ductal carcinoma in situ (DCIS) and MGACA. Invasive components in 10 of 13 tumours were invasive carcinoma of no special type (NST), 3 were metaplastic carcinoma with mesenchymal differentiation (including two cases of matrix-producing carcinoma) mixed with NST. All lesion-associated epithelial cells were triple negative (TNBC) and positive for S-100. Reticulin staining showed the presence of basement membrane in MGA, AMGA and DCIS, and its absence in invasive carcinoma. According to IHC-based TNBC molecular subtyping, 10 tumours were basal-like immune-suppressed (BLIS), 2 were luminal androgen receptor and 1 was immunomodulatory. 10 patients had gene mutations. Pathogenic germline mutations of the BRCA1 and BRCA2 genes were detected in four tumours (30.7%) and one tumour (7.7%). Somatic mutation rate of the TP53 gene was 69.2%. Amplification rates of MYC, FGFR2, JAK2 and MCL1 genes in our cohort were 46.2%, 15.4%, 15.4% and 7.7%, respectively.

Conclusion: MGACA is a rare breast carcinoma, with distinct morphological, immunohistochemical and molecular features. Most MGACA were BLIS molecular subtype of TNBC. TP53 and BRCA1 gene mutation and MYC gene amplification were the most common genetic changes in MGACA.

目的:探讨乳腺微腺腺病(MGACA)的临床病理、免疫组织化学及分子特征。方法:对13例MGACA的临床病理特征进行分析。通过免疫组化(IHC)检测AR、CD8、FOXC1和DCLK1的表达均为分子亚型。分析了511个基因的下一代测序。结果:所有肿瘤的组织学范围从微腺腺病(MGA)到非典型MGA (AMGA),导管原位癌(DCIS)和MGACA。在13例肿瘤中,有10例浸润性癌为无特殊类型浸润性癌(NST), 3例为间充质分化的化生癌(包括2例基质生成癌)伴NST。所有病变相关上皮细胞均为三阴性(TNBC), S-100阳性。网状蛋白染色显示MGA、AMGA和DCIS中存在基底膜,而浸润性癌中没有基底膜。根据基于免疫组化的TNBC分子分型,10例为基底样免疫抑制(BLIS)型,2例为腔内雄激素受体型,1例为免疫调节型。10例患者有基因突变。在4个肿瘤(30.7%)和1个肿瘤(7.7%)中检测到BRCA1和BRCA2基因的致病性种系突变。TP53基因体细胞突变率为69.2%。MYC、FGFR2、JAK2和MCL1基因在我们队列中的扩增率分别为46.2%、15.4%、15.4%和7.7%。结论:MGACA是一种罕见的乳腺癌,具有独特的形态学、免疫组织化学和分子特征。MGACA多为BLIS分子亚型。TP53、BRCA1基因突变和MYC基因扩增是MGACA最常见的遗传改变。
{"title":"Carcinoma arising in microglandular adenosis of the breast: clinicopathological and genetic analysis.","authors":"Qiang Zhang, Yanping Li, Bao-Hua Yu, Rui Bi, Xiaoli Xu, Yufan Cheng, Wentao Yang, Ruohong Shui","doi":"10.1136/jcp-2024-209833","DOIUrl":"10.1136/jcp-2024-209833","url":null,"abstract":"<p><strong>Aims: </strong>To study the clinicopathological, immunohistochemical and molecular features of carcinoma arising in microglandular adenosis (MGACA) of the breast.</p><p><strong>Methods: </strong>Clinicopathological features of 13 cases of MGACA were analysed. All tumours were molecular subtype by immunohistochemistry (IHC) of AR, CD8, FOXC1 and DCLK1 expression. Next-generation sequencing including 511 genes was analysed.</p><p><strong>Results: </strong>All tumours showed a histological spectrum ranging from microglandular adenosis (MGA) to atypical MGA (AMGA), ductal carcinoma in situ (DCIS) and MGACA. Invasive components in 10 of 13 tumours were invasive carcinoma of no special type (NST), 3 were metaplastic carcinoma with mesenchymal differentiation (including two cases of matrix-producing carcinoma) mixed with NST. All lesion-associated epithelial cells were triple negative (TNBC) and positive for S-100. Reticulin staining showed the presence of basement membrane in MGA, AMGA and DCIS, and its absence in invasive carcinoma. According to IHC-based TNBC molecular subtyping, 10 tumours were basal-like immune-suppressed (BLIS), 2 were luminal androgen receptor and 1 was immunomodulatory. 10 patients had gene mutations. Pathogenic germline mutations of the <i>BRCA1</i> and <i>BRCA2</i> genes were detected in four tumours (30.7%) and one tumour (7.7%). Somatic mutation rate of the <i>TP53</i> gene was 69.2%. Amplification rates of <i>MYC</i>, <i>FGFR2</i>, <i>JAK2</i> and <i>MCL1</i> genes in our cohort were 46.2%, 15.4%, 15.4% and 7.7%, respectively.</p><p><strong>Conclusion: </strong>MGACA is a rare breast carcinoma, with distinct morphological, immunohistochemical and molecular features. Most MGACA were BLIS molecular subtype of TNBC. <i>TP53</i> and <i>BRCA1</i> gene mutation and <i>MYC</i> gene amplification were the most common genetic changes in MGACA.</p>","PeriodicalId":15391,"journal":{"name":"Journal of Clinical Pathology","volume":" ","pages":"31-36"},"PeriodicalIF":2.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143624860","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Clinical utility of 'Shaken' biopsies for whole-genome sequencing. 全基因组测序“摇法”活检的临床应用
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209781
Rachel Nelan, Martina Mijuskovic, Martina Hughes, Jennifer Becq, Zoya Kingsbury, Eleni Tsogka, Miao He, Dunja Vucenovic, Clare Craig, Greg Elgar, Pauline Levey, Tamara Suaris, Emma Walsh, Mark Ross, J Louise Jones

Aims: Whole-genome sequencing (WGS) is beginning to be applied to cancer samples in the clinical setting. This ideally requires high-quality, minimally degraded DNA of high tumour cell content, while retaining sufficient tissue with excellent morphology for histopathological diagnosis and immunohistochemistry. The aim of this study was to investigate alternative ways of handling cancer samples to fulfil both diagnostic and molecular requirements.

Methods: Ex vivo biopsies were taken to investigate the feasibility of using cancer cells 'shaken' from the surface of a biopsy for WGS, while maintaining the tissue biopsy for histological diagnosis. WGS from the shaken cells was compared with the gold standard of a fresh-frozen (FF) biopsy. The procedure was piloted in the real-world setting for breast cancer samples.

Results: Cells shaken from ex vivo biopsies can yield DNA of sufficient quantity and quality for WGS, while having no discernible impact on quality of tissue morphology. WGS data showed good coverage, comparable variant calls and generally higher tumour content in shaken cell samples compared with the control FF samples. For real-world biopsies, DNA yields were lower, but WGS data were of excellent quality for the cases analysed.

Conclusions: Shaken biopsy sampling allows genomic sequencing from patients with cancer who may otherwise not receive a genome sequence due to limited sample availability. It represents a way of overcoming the logistics of obtaining and storing FF tissue making it a suitable technique for wider scale implementation in the clinical setting.

目的:全基因组测序(WGS)正开始在临床环境中应用于癌症样本。理想情况下,这需要高质量、低降解的DNA,高肿瘤细胞含量,同时保留足够的组织,具有良好的形态学,用于组织病理学诊断和免疫组织化学。本研究的目的是研究处理癌症样本的替代方法,以满足诊断和分子要求。方法:采用离体活组织检查,探讨从活检组织表面“摇匀”癌细胞进行WGS的可行性,同时保持组织活检进行组织学诊断。将摇匀细胞的WGS与新鲜冷冻(FF)活检的金标准进行比较。该程序在乳腺癌样本的真实环境中进行了试点。结果:从离体活检中摇匀的细胞可以产生足够数量和质量的DNA用于WGS,同时对组织形态质量没有明显的影响。WGS数据显示,与对照FF样本相比,摇过的细胞样本具有良好的覆盖率、可比较的变异呼叫和普遍较高的肿瘤含量。对于真实的活组织检查,DNA产率较低,但WGS数据对于所分析的病例具有极好的质量。结论:震荡活检取样允许对癌症患者进行基因组测序,否则由于样本可用性有限,患者可能无法获得基因组测序。它代表了一种克服获得和储存FF组织的物流的方法,使其成为临床环境中更大规模实施的合适技术。
{"title":"Clinical utility of 'Shaken' biopsies for whole-genome sequencing.","authors":"Rachel Nelan, Martina Mijuskovic, Martina Hughes, Jennifer Becq, Zoya Kingsbury, Eleni Tsogka, Miao He, Dunja Vucenovic, Clare Craig, Greg Elgar, Pauline Levey, Tamara Suaris, Emma Walsh, Mark Ross, J Louise Jones","doi":"10.1136/jcp-2024-209781","DOIUrl":"10.1136/jcp-2024-209781","url":null,"abstract":"<p><strong>Aims: </strong>Whole-genome sequencing (WGS) is beginning to be applied to cancer samples in the clinical setting. This ideally requires high-quality, minimally degraded DNA of high tumour cell content, while retaining sufficient tissue with excellent morphology for histopathological diagnosis and immunohistochemistry. The aim of this study was to investigate alternative ways of handling cancer samples to fulfil both diagnostic and molecular requirements.</p><p><strong>Methods: </strong>Ex vivo biopsies were taken to investigate the feasibility of using cancer cells 'shaken' from the surface of a biopsy for WGS, while maintaining the tissue biopsy for histological diagnosis. WGS from the shaken cells was compared with the gold standard of a fresh-frozen (FF) biopsy. The procedure was piloted in the real-world setting for breast cancer samples.</p><p><strong>Results: </strong>Cells shaken from ex vivo biopsies can yield DNA of sufficient quantity and quality for WGS, while having no discernible impact on quality of tissue morphology. WGS data showed good coverage, comparable variant calls and generally higher tumour content in shaken cell samples compared with the control FF samples. For real-world biopsies, DNA yields were lower, but WGS data were of excellent quality for the cases analysed.</p><p><strong>Conclusions: </strong>Shaken biopsy sampling allows genomic sequencing from patients with cancer who may otherwise not receive a genome sequence due to limited sample availability. It represents a way of overcoming the logistics of obtaining and storing FF tissue making it a suitable technique for wider scale implementation in the clinical setting.</p>","PeriodicalId":15391,"journal":{"name":"Journal of Clinical Pathology","volume":" ","pages":"4-11"},"PeriodicalIF":2.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12772573/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143542179","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Oesophageal sebaceous heterotopia with ducts mimicking epidermoid metaplasia: a rare diagnostic pitfall. 食道皮脂腺异位伴导管模仿表皮样变:一个罕见的诊断陷阱。
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-209809
Audrey McCloskey, Kevin M Waters, Brent K Larson, Maha Guindi, Keith Lai, Srinivas Gaddam, Anila Vasireddy, Danielle A Hutchings
{"title":"Oesophageal sebaceous heterotopia with ducts mimicking epidermoid metaplasia: a rare diagnostic pitfall.","authors":"Audrey McCloskey, Kevin M Waters, Brent K Larson, Maha Guindi, Keith Lai, Srinivas Gaddam, Anila Vasireddy, Danielle A Hutchings","doi":"10.1136/jcp-2024-209809","DOIUrl":"10.1136/jcp-2024-209809","url":null,"abstract":"","PeriodicalId":15391,"journal":{"name":"Journal of Clinical Pathology","volume":" ","pages":"71-72"},"PeriodicalIF":2.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142501191","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Diagnostic dilemmas in idiopathic multicentric Castlemans disease idiopathic plasmacytic lymphadenopathy (IPL) type and IgG4-related lymphadenopathy: challenges in recognition and distinction, especially in western pathology. 特发性多中心Castlemans病的诊断困境特发性浆细胞性淋巴结病(IPL)型和igg4相关淋巴结病:在认识和区分上的挑战,特别是在西方病理学
IF 2 4区 医学 Q2 PATHOLOGY Pub Date : 2025-12-15 DOI: 10.1136/jcp-2024-210036
Vikram Deshpande, Judith Ferry
{"title":"Diagnostic dilemmas in idiopathic multicentric Castlemans disease idiopathic plasmacytic lymphadenopathy (IPL) type and IgG4-related lymphadenopathy: challenges in recognition and distinction, especially in western pathology.","authors":"Vikram Deshpande, Judith Ferry","doi":"10.1136/jcp-2024-210036","DOIUrl":"10.1136/jcp-2024-210036","url":null,"abstract":"","PeriodicalId":15391,"journal":{"name":"Journal of Clinical Pathology","volume":" ","pages":"1-3"},"PeriodicalIF":2.0,"publicationDate":"2025-12-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"143441077","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
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Journal of Clinical Pathology
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