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Adapting the cystic fibrosis care model: Perspectives from people with CF, caregivers, and members of CF care teams 调整囊性纤维化护理模式:囊性纤维化患者、护理人员和囊性纤维化护理团队成员的观点。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-11-01 DOI: 10.1016/j.jcf.2024.09.002
Quynh T. Tran , Enid Aliaj , Murrey G. Olmsted , Sarah E Hempstead , Paula H. Lomas , Rebekah F. Brown , Patrick A. Flume , A. Whitney Brown

Background

Rapidly emerging clinical trends offer the opportunity to amend guidance on issues pertaining to CF care delivery. A national survey was conducted to gather perspectives on CF care including potential adaptations to the care model to best meet the needs of this population.

Methods

A survey instrument was developed to capture perspectives on CF care. People with CF (pwCF), including those post lung transplant, caregivers and care teams were surveyed. Descriptive statistics were calculated to characterize respondents and responses.

Results

In-person, routine visits with the CF care teams were valued by survey respondents. However, reduced in-person visit frequency from the standard three-month interval was supported for individuals in a stable state of health. This was particularly true for pwCF ages two or older and on a modulator. Lung function, pulmonary exacerbation frequency, and transition periods were noted to influence preference for visit frequency. Integrating telehealth with remote monitoring in between visits was broadly supported. For shared care between CF teams and other medical providers (transplant teams and primary care providers (PCP)), good communication, easily accessible health records, and convenient locations were important.

Conclusions

Survey findings support adapting CF care based on individual needs and life transitions. Themes identified can inform future areas of study and resource development to support successful modification of the CF care model and shared decision-making between patients and their care providers.
背景:迅速兴起的临床趋势为修订有关 CF 护理服务问题的指南提供了机会。我们开展了一项全国性调查,以收集有关 CF 护理的观点,包括对护理模式的潜在调整,从而最大限度地满足这一人群的需求:方法:我们开发了一种调查工具来收集有关 CF 护理的观点。对 CF 患者(包括肺移植后患者)、护理人员和护理团队进行了调查。我们计算了描述性统计数字,以描述受访者和回答的特点:受访者非常重视与 CF 护理团队的面对面例行探访。然而,对于健康状况稳定的人来说,他们支持在标准的三个月间隔期基础上减少亲自探访的频率。对于年龄在两岁或两岁以上且正在使用调节剂的儿童患者来说,尤其如此。研究指出,肺功能、肺部恶化频率和过渡时期会影响对就诊频率的偏好。在两次就诊之间将远程医疗与远程监测相结合的做法得到了广泛支持。对于 CF 团队与其他医疗服务提供者(移植团队和初级保健提供者 (PCP))之间的共同护理而言,良好的沟通、易于获取的健康记录和方便的地点非常重要:调查结果支持根据个人需求和生活转变调整 CF 护理。所确定的主题可为未来的研究领域和资源开发提供信息,以支持成功修改 CF 护理模式以及患者与其护理提供者之间的共同决策。
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引用次数: 0
Staying agile: Adapting care to meet changing healthcare needs of people with cystic fibrosis 保持灵活性:调整护理以满足囊性纤维化患者不断变化的医疗保健需求。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-11-01 DOI: 10.1016/j.jcf.2024.09.008
Rebekah F. Brown , A. Whitney Brown , Paula Lomas , Quynh T. Tran , Sarah E. Hempstead , Patrick A. Flume
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引用次数: 0
Repurposing DNase I and alginate lyase to degrade the biofilm matrix of dual-species biofilms of Staphylococcus aureus and Pseudomonas aeruginosa grown in artificial sputum medium: In-vitro assessment of their activity in combination with broad-spectrum antibiotics 重新利用 DNase I 和藻酸盐裂解酶降解人工痰培养基中生长的金黄色葡萄球菌和铜绿假单胞菌双菌种生物膜基质:与广谱抗生素联合使用的体外活性评估。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-11-01 DOI: 10.1016/j.jcf.2024.02.012
Zhifen Wang , Rita Vanbever , Joseph H. Lorent , Jessica Solis , Christiane Knoop , Françoise Van Bambeke

Background

Biofilm-associated pulmonary infections pose therapeutic challenges in cystic fibrosis patients, especially when involving multiple bacterial species. Enzymatic degradation of the biofilm matrix may offer a potential solution to enhance antibiotic efficacy. This study investigated the repurposing of DNase I, commonly used for its mucolytic activity in cystic fibrosis, to target extracellular DNA within biofilms, as well as potential synergies with alginate lyase and broad-spectrum antibiotics in dual-species biofilms of Pseudomonas aeruginosa and Staphylococcus aureus.

Methods

Dual-species biofilms were grown in artificial sputum medium using S. aureus and P. aeruginosa isolated by pairs from the same patients and exposed to various combinations of enzymes, meropenem, or tobramycin. Activity was assessed by measuring biofilm biomass and viable counts. Matrix degradation and decrease in bacterial load were visualized using confocal microscopy. Biofilm viscoelasticity was estimated by rheology.

Results

Nearly complete destruction of the biofilms was achieved only if combining the enzymatic cocktail with the two antibiotics, and if using supratherapeutic levels of DNase I and high concentrations of alginate lyase. Biofilms containing non-pigmented mucoid P. aeruginosa required higher antibiotic concentrations, despite low viscoelasticity. In contrast, for biofilms with pigmented mucoid P. aeruginosa, a correlation was observed between the efficacy of different treatments and the reduction they caused in elasticity and viscosity of the biofilm.

Conclusions

In this complex, highly drug-tolerant biofilm model, enzymes prove useful adjuvants to enhance antibiotic activity. However, the necessity for high enzyme concentrations emphasizes the need for thorough concentration-response evaluations and safety assessments before considering clinical applications.
背景:与生物膜相关的肺部感染给囊性纤维化患者的治疗带来了挑战,尤其是涉及多种细菌种类时。酶降解生物膜基质可能是提高抗生素疗效的潜在解决方案。本研究调查了 DNase I(常用于囊性纤维化的粘液溶解活性)在铜绿假单胞菌和金黄色葡萄球菌双菌种生物膜中针对细胞外 DNA 的再利用,以及与藻酸盐裂解酶和广谱抗生素的潜在协同作用:在人工痰培养基中培养金黄色葡萄球菌和铜绿假单胞菌的双种生物膜。通过测量生物膜生物量和存活计数来评估其活性。使用共聚焦显微镜观察基质降解和细菌量减少的情况。生物膜的粘弹性通过流变学进行估算:结果:只有将酶鸡尾酒与两种抗生素结合使用,以及使用超治疗水平的 DNase I 和高浓度的藻酸盐裂解酶,才能几乎完全破坏生物膜。含有非色素粘液铜绿假单胞菌的生物膜尽管粘弹性较低,但需要更高浓度的抗生素。与此相反,对于含有色素粘液铜绿假单胞菌的生物膜,不同处理方法的疗效与其导致的生物膜弹性和粘度降低之间存在相关性:在这种复杂的高耐药性生物膜模型中,酶被证明是增强抗生素活性的有用佐剂。然而,高浓度酶的必要性强调了在考虑临床应用之前进行彻底的浓度-反应评估和安全评估的必要性。
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引用次数: 0
Changes in urinary glutathione sulfonamide (GSA) levels between admission and discharge of patients with cystic fibrosis 囊性纤维化患者从入院到出院期间尿液中谷胱甘肽磺酰胺(GSA)水平的变化。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-11-01 DOI: 10.1016/j.jcf.2024.04.009
Tamara L Blake , Peter D Sly , Isabella Andersen , Claire E Wainwright , David W Reid , Scott C Bell , Briana R Smith , Anthony J Kettle , Nina Dickerhof
There is an urgent need to develop sensitive, non-invasive biomarkers that can track airway inflammatory activity for patients with cystic fibrosis (CF). Urinary glutathione sulfonamide (GSA) levels correlate well with GSA levels in BAL samples and other markers of neutrophilic inflammation, suggesting that this biomarker may be suitable for tracking disease activity in this population. We recruited 102 children (median 11.5 years-old) and 64 adults (median 32.5 years-old) who were admitted to hospital for management of an acute pulmonary exacerbation and/or eradication of infectious agents such as Pseudomonas aeruginosa or Staphylococcus aureus. Our aim was to explore how urinary GSA levels changed across admission timepoints. Urine samples were collected at admission and discharge, and GSA measured by liquid chromatography with mass spectrometry. Paired admission-discharge results were compared using Wilcoxon signed-rank test. Paired admission-discharge samples were available for 53 children and 60 adults. A statistically significant difference was observed between admission-discharge for children and adults. Spearman's correlation analysis identified a correlation between urinary GSA levels and sex and S. aureus infection for children only. Our preliminary findings suggest that urinary GSA is responsive to the resolution of an acute pulmonary exacerbation and therefore warrants further studies in this population.
囊性纤维化(CF)患者急需开发能跟踪气道炎症活动的灵敏、非侵入性生物标记物。尿液谷胱甘肽磺酰胺(GSA)水平与 BAL 样本中的 GSA 水平及其他中性粒细胞炎症标志物有很好的相关性,这表明该生物标记物可能适合用于跟踪该人群的疾病活动。我们招募了 102 名儿童(中位数为 11.5 岁)和 64 名成人(中位数为 32.5 岁),他们因急性肺部恶化和/或铜绿假单胞菌或金黄色葡萄球菌等感染性病原体的根除而入院治疗。我们的目的是探索尿液中 GSA 水平在不同入院时间点的变化情况。我们在患者入院和出院时收集尿液样本,并采用液相色谱-质谱法测量 GSA。使用 Wilcoxon 符号秩检验比较入院和出院的配对结果。53 名儿童和 60 名成人获得了入院和出院的配对样本。从统计学角度看,儿童和成人的入院和出院结果存在明显差异。斯皮尔曼相关分析表明,仅儿童尿液中的 GSA 水平与性别和金黄色葡萄球菌感染之间存在相关性。我们的初步研究结果表明,尿液中的 GSA 对急性肺部恶化的缓解具有反应性,因此有必要对这一人群进行进一步研究。
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引用次数: 0
Metabolomics analysis of bronchoalveolar lavage fluid predicts unique features of the lower airway in pediatric cystic fibrosis 支气管肺泡灌洗液的代谢组学分析可预测小儿囊性纤维化患者下气道的独特特征。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-11-01 DOI: 10.1016/j.jcf.2024.04.017
John B. O'Connor , Madison Mottlowitz , Brandie D. Wagner , J. Kirk Harris , Theresa A. Laguna

Background

Progressive, obstructive lung disease resulting from chronic infection and inflammation is the leading cause of morbidity and mortality in persons with cystic fibrosis (PWCF). Metabolomics and next -generation sequencing (NGS) of airway secretions can allow for better understanding of cystic fibrosis (CF) pathophysiology. In this study, global metabolomic profiling on bronchoalveolar lavage fluid (BALF) obtained from pediatric PWCF and disease controls (DCs) was performed and compared to lower airway microbiota, inflammation, and lung function.

Methods

BALF was collected from children undergoing flexible bronchoscopies for clinical indications. Metabolomic profiling was performed using a platform developed by Metabolon Inc. Total bacterial load (TBL) was measured using quantitative polymerase chain reaction (qPCR), and bacterial communities were characterized using 16S ribosomal RNA (rRNA) sequencing. Random Forest Analysis (RFA), principal component analysis (PCA), and hierarchical clustering analysis (HCA) were performed.

Results

One hundred ninety-five BALF samples were analyzed, 142 (73 %) from PWCF. Most metabolites (425/665) and summed categories (7/9) were significantly increased in PWCF. PCA of the metabolomic data revealed CF BALF exhibited more dispersed clustering compared to DC BALF. Higher metabolite concentrations correlated with increased inflammation, increased abundance of Staphylococcus, and decreased lung function.

Conclusions

The lower airway metabolome of PWCF was defined by a complex expansion of metabolomic activity. These findings could be attributed to heightened inflammation in PWCF and aspects of the CF airway polymicrobial ecology. CF-specific metabolomic features are associated with the unique underlying biology of the CF airway.
背景:慢性感染和炎症导致的进行性阻塞性肺病是囊性纤维化患者(PWCF)发病和死亡的主要原因。气道分泌物的代谢组学和下一代测序(NGS)可以更好地了解囊性纤维化(CF)的病理生理学。本研究对小儿囊性纤维化患者和疾病对照组(DCs)的支气管肺泡灌洗液(BALF)进行了全球代谢组学分析,并将其与下气道微生物群、炎症和肺功能进行了比较:方法: 收集因临床适应症而接受柔性支气管镜检查的儿童的 BALF。使用 Metabolon 公司开发的平台进行代谢组学分析。使用定量聚合酶链反应(qPCR)测量细菌总负荷(TBL),并使用 16S 核糖体 RNA(rRNA)测序鉴定细菌群落。进行了随机森林分析(RFA)、主成分分析(PCA)和层次聚类分析(HCA):分析了 195 份 BALF 样本,其中 142 份(73%)来自 PWCF。大多数代谢物(425/665)和总分类(7/9)在 PWCF 中明显增加。代谢组学数据的 PCA 显示,与 DC BALF 相比,CF BALF 的聚类更为分散。较高的代谢物浓度与炎症加重、葡萄球菌增多和肺功能下降相关:结论:PWCF 的下呼吸道代谢组是由复杂的代谢组活性扩展所决定的。这些发现可归因于PWCF炎症的加剧和CF气道多微生物生态学的某些方面。CF特有的代谢组特征与CF气道独特的潜在生物学特性有关。
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引用次数: 0
Supporting adherence to the cystic fibrosis regimen: Development and validation of The Daily Care Check-In (DCC). 支持坚持囊性纤维化治疗方案:日常护理签到 (DCC) 的开发与验证。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-10-31 DOI: 10.1016/j.jcf.2024.10.011
Kristin A Riekert, Christine Ford, Andrea Goodman, Thomas Eckmann, Angela Green, Alexandra L Quittner

Background: The cystic fibrosis (CF) regimen is time-consuming and burdensome leading to barriers to self-management. This mixed-methods study developed the Daily Care Check-in (DCC) that is specific to the barriers faced by people with CF (PWCF) and evaluated its validity.

Methods: Qualitative methods were used to identify barriers to self-management and develop items, with "think aloud" cognitive interviews conducted to refine the items. A multisite, cross-sectional study was conducted to test the internal consistency, test-retest reliability, and validity of the DCC scores, comparing them to objective medication adherence (composite medication possession ratio (cMPR)) and psychosocial measures (self-efficacy, medication beliefs, executive functioning, depressive and anxiety symptoms, treatment burden, and treatment complexity).

Results: The DCC (18 items) includes two scales: Occurrence (score range 0-18) and Interference (score range 0-90). 405 participants completed the DCC, 344 (85 %) completed the survey, and 365 (90 %) had a cMPR calculated. On average, 6.8 barriers were reported (SD = 4.2 Occurrence Scale), and the Interference Scale had a mean score of 18.4 (SD = 14.0). Reliability was acceptable to good. cMPR was negatively correlated with the DCC (rho=-0.26, Occurrence and rho = -0.31, Interference, p-values<0.0001). A priori hypotheses between the DCC and the other measures were supported and demonstrated construct validity.

Conclusions: This study provides evidence supporting the validity of the DCC for assessing the presence and impact of barriers to CF self-management, including medication adherence. Formal screening of self-management barriers (e.g., using the DCC) should be considered to facilitate conversations with the care team and identify tailored interventions to support CF self-management.

背景:囊性纤维化(CF)疗程耗时且负担沉重,导致患者在自我管理方面遇到障碍。这项混合方法研究针对囊性纤维化患者(PWCF)面临的障碍开发了日常护理签到(DCC),并对其有效性进行了评估:方法:采用定性方法确定自我管理的障碍并开发项目,同时进行 "大声思考 "认知访谈以完善项目。我们进行了一项多地点横断面研究,以检验 DCC 分数的内部一致性、测试-再测试可靠性和有效性,并将其与客观用药依从性(复合药物持有率 (cMPR))和社会心理测量(自我效能、用药信念、执行功能、抑郁和焦虑症状、治疗负担和治疗复杂性)进行比较:DCC(18 个项目)包括两个量表:结果:DCC(18 个项目)包括两个量表:发生(分值范围 0-18)和干扰(分值范围 0-90)。405 名参与者完成了 DCC,344 人(85%)完成了调查,365 人(90%)计算了 cMPR。报告的障碍平均为 6.8 个(SD = 4.2 个发生量表),干扰量表的平均分为 18.4 分(SD = 14.0 分)。cMPR 与 DCC 呈负相关(rho=-0.26,发生量表;rho=-0.31,干扰量表,p 值):本研究提供的证据支持了 DCC 在评估 CF 自我管理障碍(包括服药依从性)的存在和影响方面的有效性。应考虑对自我管理障碍进行正式筛查(如使用 DCC),以促进与护理团队的对话,并确定支持 CF 自我管理的定制干预措施。
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引用次数: 0
Pseudo-Bartter syndrome: A CFTR-related disorder? 假性巴特综合征:一种与 CFTR 相关的疾病?
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-10-31 DOI: 10.1016/j.jcf.2024.10.007
Noelia Rodriguez Mier, Virginie Antoons, Senne Cuyx, Anabela Santo Ramalho, Mieke Boon, Marijke Proesmans, Djalila Mekahli, François Vermeulen

This case report presents a 14-month-old boy with a history of cystic fibrosis (CF) carrier status, diagnosed following a positive newborn screening for CF (CF-NBS), who developed symptoms suggestive of Pseudo-Bartter syndrome (PBS). Despite initial evaluations not meeting CF diagnostic criteria, subsequent investigations revealed an intermediate sweat chloride concentration, a second CFTR mutation, and CFTR dysfunction through rectal organoid morphology analysis (ROMA) consistent with CFTR-related disorder (CFTR-RD). This case raises important considerations regarding the diagnosis and management of CFTR-RD. PBS can be considered as a rare presentation of CFTR-RD and can occur in children with sweat chloride below the CF range. Functional testing of CFTR by ROMA enabled a more accurate diagnosis. Despite the negative work-up after CF-NBS, this infant developed CFTR-RD, but this should not be considered as a screen failure. Follow-up of children with CFTR-RD at a CF centre is preferred, because of the risk of developing CF.

本病例报告介绍了一名 14 个月大的男童,他曾是囊性纤维化(CF)携带者,在新生儿 CF 筛查(CF-NBS)呈阳性后被确诊,并出现了提示假巴特综合征(PBS)的症状。尽管最初的评估结果不符合 CF 诊断标准,但随后的检查发现该患者的汗液氯化物浓度处于中等水平,存在第二个 CFTR 基因突变,并且通过直肠类器官形态分析(ROMA)发现其 CFTR 功能障碍与 CFTR 相关疾病(CFTR-RD)一致。该病例提出了有关 CFTR-RD 诊断和治疗的重要注意事项。PBS可视为CFTR-RD的一种罕见表现,可发生于汗液氯化物低于CF范围的儿童。通过ROMA对CFTR进行功能测试可以获得更准确的诊断。尽管CF-NBS检查结果为阴性,但这名婴儿还是发展成了CFTR-RD,但这不应被视为筛查失败。由于 CFTR-RD 患儿有发展成 CF 的风险,因此最好在 CF 中心对其进行随访。
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引用次数: 0
Mental health, behaviour and sleep quality in children 6-11 years before and after elexacaftor/tezacaftor/ivacaftor initiation. 开始使用 elexacaftor/tezacaftor/ivacaftor 前后 6-11 岁儿童的心理健康、行为和睡眠质量。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-10-25 DOI: 10.1016/j.jcf.2024.10.002
Tonia Douglas, Maddison Deery, Hayley Kimball, Vanessa E Cobham, Sophia Panochini, Paul D Robinson, Claire E Wainwright, Peter D Sly, Tamara Blake
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引用次数: 0
Pf bacteriophage is associated with decline in lung function in a longitudinal cohort of patients with cystic fibrosis and Pseudomonas airway infection. 在囊性纤维化和气道假单胞菌感染患者的纵向队列中,噬菌体Pf与肺功能下降有关。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-10-25 DOI: 10.1016/j.jcf.2024.09.018
Elizabeth B Burgener, Aditi Gupta, Kayo Nakano, Sophia L Gibbs, Maya E Sommers, Arya Khosravi, Michelle S Bach, Colleen Dunn, Jacquelyn Spano, Patrick R Secor, Lu Tian, Paul L Bollyky, Carlos E Milla

Background: The Pseudomonas filamentous bacteriophage (Pf) infects Pseudomonas aeruginosa (Pa) and is abundant in the airways of many people with cystic fibrosis (CF) (pwCF). We previously demonstrated that Pf promotes biofilm growth, as well as generates liquid crystals that confer biofilms with adhesivity, viscosity and resistance to clearance. Consistent with these findings, the presence of Pf in sputum from pwCF has been linked to chronic Pa infection and more severe exacerbations in a cross-sectional cohort study.

Methods: We examined the relationships between Pf and clinical outcomes in a longitudinal study of pwCF. Sputum Pa and Pf concentrations were measured by qPCR, as well cytokines and active neutrophil elastase by standardized assays. Recorded clinical data, including spirometry and microbiological results, were analyzed for associations with Pf. Finally, lung explants from pwCF in this cohort who underwent lung transplantation were examined for presence of liquid crystals within secretions.

Results: In explanted lungs from pwCF with known Pf infection we demonstrate areas of birefringence consistent with liquid crystalline structures within the airways. We find that high concentration of Pf in sputum is associated with accelerated loss of lung function, suggesting a potential role for Pf in the pathogenesis of CF lung disease. We also find Pf to associate with increased airway inflammation and an anti-viral cytokine response.

Conclusion: Pf may serve as a prognostic biomarker and potential therapeutic target for Pa infections in CF.

背景:假单胞菌丝状噬菌体(Pf)感染铜绿假单胞菌(Pa),并在许多囊性纤维化(CF)患者(pwCF)的呼吸道中大量存在。我们以前曾证实,Pf 能促进生物膜生长,并产生液晶,使生物膜具有粘附性、粘性和抗清除性。与这些研究结果相一致,在一项横断面队列研究中,PwCF 患者痰液中的 Pf 与慢性 Pa 感染和更严重的病情加重有关:方法:我们在一项针对肺结核患者的纵向研究中考察了Pf与临床结果之间的关系。通过 qPCR 法测量痰中 Pa 和 Pf 的浓度,并通过标准化检测法测量细胞因子和活性中性粒细胞弹性蛋白酶。对记录的临床数据(包括肺活量测定和微生物学结果)进行了分析,以确定其与 Pf 的关系。最后,对该队列中接受肺移植的 pwCF 肺部外植体进行了检查,以确定分泌物中是否存在液晶:结果:在已知感染了 Pf 的 pwCF 肺部切片中,我们发现了与气道内液晶结构一致的双折射区域。我们发现,痰中高浓度的 Pf 与肺功能加速丧失有关,这表明 Pf 在 CF 肺病的发病机制中可能发挥作用。我们还发现 Pf 与气道炎症加剧和抗病毒细胞因子反应有关:结论:Pf 可作为 CF 中 Pa 感染的预后生物标志物和潜在治疗靶点。
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引用次数: 0
Longitudinal effects of elexacaftor/tezacaftor/ivacaftor on the oropharyngeal metagenome in adolescents with cystic fibrosis. elexacaftor/tezacaftor/ivacaftor 对囊性纤维化青少年口咽部元基因组的纵向影响。
IF 5.4 2区 医学 Q1 RESPIRATORY SYSTEM Pub Date : 2024-10-14 DOI: 10.1016/j.jcf.2024.10.001
Ruth Steinberg, Alexander Moeller, Amanda Gisler, Nadja Mostacci, Markus Hilty, Jakob Usemann

Background: Triple modulator therapy elexacaftor/tezacaftor/ivacaftor (ETI) improves lung function and impacts upon the respiratory microbiome in people with Cystic fibrosis (pwCF) with advanced lung disease. However, adolescents with cystic fibrosis (CF) are less colonized with bacterial pathogens than adult pwCF but their microbiota already differs from healthy individuals. The aim of this study was to longitudinally analyze the impact of ETI on the respiratory metagenome in adolescents with predominantly mild CF lung disease.

Methods: In this prospective observational study, we included pwCF aged 12-20 years with at least one F508del mutation, who collected oropharyngeal swabs before and after initiation of ETI therapy twice per week to biweekly over three months. We performed whole metagenome shotgun sequencing, followed by host DNA filtering and taxonomic profiling. We used linear and additive mixed effects models adjusted for known confounders and corrected for multiple testing to study longitudinal development of the microbiome. We analyzed bacterial diversity, abundance, and strain-level phylogeny.

Results: We analyzed the metagenomic data of 297 swabs of 20 pwCF. Microbiome composition changed after initiation of ETI therapy. We observed a slight diversification of the microbiome over time (Inv Simpson, Coef 0.085, 95 %CI 0.003, 0.17, p = 0.04). Strain-level analysis and clustering showed that strain retention of the most frequent bacterial species is predominant even during ETI therapy.

Conclusions: During three months of ETI therapy, commensal bacteria increased, which may help to prevent overgrowth of bacterial pathogens.

背景:三联调节疗法 elexacaftor/tezacaftor/ivacaftor (ETI) 可改善晚期肺病囊性纤维化患者(pwCF)的肺功能,并对呼吸道微生物群产生影响。然而,与成年囊性纤维化患者相比,青少年囊性纤维化患者的细菌病原体定植较少,但他们的微生物群已经与健康人不同。本研究旨在纵向分析 ETI 对以轻度 CF 肺病为主的青少年呼吸道元基因组的影响:在这项前瞻性观察研究中,我们纳入了年龄在 12-20 岁、至少有一个 F508del 基因突变的 pwCF,他们在开始接受 ETI 治疗前后收集了口咽拭子,在三个月内每周两次到每两周一次。我们进行了全元基因组枪式测序,然后进行了宿主 DNA 筛选和分类分析。我们使用线性和加性混合效应模型来研究微生物组的纵向发展,这些模型对已知的混杂因素进行了调整,并对多重测试进行了校正。我们分析了细菌的多样性、丰度和菌株级系统发育:结果:我们分析了 20 个 pwCF 的 297 份拭子的元基因组数据。微生物组的组成在接受 ETI 治疗后发生了变化。随着时间的推移,我们观察到微生物组略有多样化(Inv Simpson, Coef 0.085, 95 %CI 0.003, 0.17, p = 0.04)。菌株水平分析和聚类显示,即使在 ETI 治疗期间,最常见细菌种类的菌株保留率也很高:结论:在三个月的 ETI 治疗期间,共生菌增多,这可能有助于防止细菌病原体的过度生长。
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引用次数: 0
期刊
Journal of Cystic Fibrosis
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