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The Pathogenic Role of Anti-Granulocyte-Macrophage Colony-Stimulating Factor Autoantibodies in the Nocardiosis with the Central Nervous System Involvement. 抗粒细胞-巨噬细胞集落刺激因子自身抗体在中枢神经系统受累的诺卡氏杆菌病中的致病作用
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-12 DOI: 10.1007/s10875-024-01775-w
Yu-Fang Lo, Shang-Yu Wang, Yi-Hui Wu, Mao-Wang Ho, Chun-Fu Yeh, Tsai-Yi Wu, Jhan-Jie Peng, You-Ning Lin, Jing-Ya Ding, Han-Po Shih, Chia-Chi Lo, Yu-Pei Chan, Cheng-Shyuan Rau, Chen-Yen Kuo, Kun-Hua Tu, Wei-Te Lei, Yi-Chun Chen, Cheng-Lung Ku

Purpose: Anti-granulocyte-macrophage colony-stimulating factor autoantibodies (anti-GM-CSF Abs) are implicated in the pathogenesis of Cryptococcus gattii (C. gattii) infection and pulmonary alveolar proteinosis (PAP). Their presence has also been noted in nocardiosis cases, particularly those with disseminated disease. This study delineates a case series characterizing clinical features and specificity of anti-GM-CSF Abs in nocardiosis patients.

Methods: In this study, eight patients were recruited to determine the presence or absence of anti-GM-CSF Abs. In addition to the detailed description of the clinical course, we thoroughly investigated the autoantibodies regarding the characteristics, isotypes, subclasses, titers, and neutralizing capacities by utilizing the plasma samples from patients.

Results: Of eight patients, five tested positive for anti-GM-CSF Abs, all with central nervous system (CNS) involvement; patients negative for these antibodies did not develop CNS nocardiosis. Distinct from previously documented cases, none of our patients with anti-GM-CSF Abs exhibited PAP symptoms. The titer and neutralizing activity of anti-GM-CSF Abs in our cohort did not significantly deviate from those found in C. gattii cryptococcosis and PAP patients. Uniquely, one individual (Patient 3) showed a minimal titer and neutralizing action of anti-GM-CSF Abs, with no relation to disease severity. Moreover, IgM autoantibodies were notably present in all CNS nocardiosis cases investigated.

Conclusion: The presence of anti-GM-CSF Abs suggests an intrinsic immunodeficiency predisposing individuals toward CNS nocardiosis. The presence of anti-GM-CSF Abs helps to elucidate vulnerability to CNS nocardiosis, even with low titer of autoantibodies. Consequently, systematic screening for anti-GM-CSF Abs should be considered a crucial diagnostic step for nocardiosis patients.

目的:抗粒细胞-巨噬细胞集落刺激因子自身抗体(抗GM-CSF抗体)与加特隐球菌(C. gattii)感染和肺泡蛋白沉着病(PAP)的发病机制有关。在诺卡氏杆菌病病例中也发现了抗 M-CSF 蛋白,尤其是那些有播散性疾病的病例。本研究描述了一个病例系列,描述了诺卡地病患者抗 GM-CSF 抗体的临床特征和特异性:本研究招募了八名患者,以确定是否存在抗 GM-CSF 抗体。除了详细描述临床病程外,我们还利用患者的血浆样本对自身抗体的特征、异型、亚类、滴度和中和能力进行了深入研究:结果:在八名患者中,五人的抗 GM-CSF 抗体检测呈阳性,均累及中枢神经系统(CNS);而这些抗体呈阴性的患者均未发展为中枢神经系统念珠菌病。与之前记录的病例不同的是,我们的抗 GM-CSF 抗体患者均未表现出 PAP 症状。我们队列中抗 GM-CSF 抗体的滴度和中和活性与 C. gattii 隐球菌病和 PAP 患者中发现的抗 GM-CSF 抗体的滴度和中和活性没有明显差异。与众不同的是,有一名患者(患者 3)的抗 GM-CSF 抗体滴度和中和活性极低,与疾病严重程度无关。此外,在所有接受调查的中枢神经系统念珠菌病病例中都明显存在 IgM 自身抗体:结论:抗 GM-CSF 抗体的存在表明,中枢神经系统念珠菌病易感人群存在内在的免疫缺陷。即使自身抗体滴度较低,抗 GM-CSF 抗体的存在也有助于阐明中枢神经系统念珠菌病的易感性。因此,系统筛查抗 GM-CSF 抗体应被视为诺卡地病患者的重要诊断步骤。
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引用次数: 0
Interferon Alpha Therapy in MSMD. α干扰素治疗 MSMD。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-09 DOI: 10.1007/s10875-024-01779-6
Vaishnavi V Iyengar, Akshaya Chougule, Vijaya Gowri, Prasad Taur, Minnie Bodhanwala, Mukesh M Desai
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引用次数: 0
DIAPH1-Deficiency is Associated with Major T, NK and ILC Defects in Humans. DIAPH1缺陷与人类主要的T、NK和ILC缺陷有关。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-09 DOI: 10.1007/s10875-024-01777-8
Zehra Busra Azizoglu, Royala Babayeva, Zehra Sule Haskologlu, Mustafa Burak Acar, Serife Ayaz-Guner, Fatma Zehra Okus, Mohammad Bilal Alsavaf, Salim Can, Kemal Erdem Basaran, Mehmed Fatih Canatan, Alper Ozcan, Hasret Erkmen, Can Berk Leblebici, Ebru Yilmaz, Musa Karakukcu, Mehmet Kose, Ozlem Canoz, Ahmet Özen, Elif Karakoc-Aydiner, Serdar Ceylaner, Gülsüm Gümüş, Huseyin Per, Hakan Gumus, Halit Canatan, Servet Ozcan, Figen Dogu, Aydan Ikinciogullari, Ekrem Unal, Safa Baris, Ahmet Eken

Loss of function mutations in Diaphanous related formin 1 (DIAPH1) are associated with seizures, cortical blindness, and microcephaly syndrome (SCBMS) and are recently linked to combined immunodeficiency. However, the extent of defects in T and innate lymphoid cells (ILCs) remain unexplored. Herein, we characterized the primary T, natural killer (NK) and helper ILCs of six patients carrying two novel loss of function mutation in DIAPH1 and Jurkat cells after DIAPH1 knockdown. Mutations were identified by whole exome sequencing. T-cell immunophenotyping, proliferation, migration, cytokine signaling, survival, and NK cell cytotoxicity were studied via flow cytometry-based assays, confocal microscopy, and real-time qPCR. CD4+ T cell proteome was analyzed by mass spectrometry. p.R351* and p.R322*variants led to a significant reduction in the DIAPH1 mRNA and protein levels. DIAPH1-deficient T cells showed proliferation, activation, as well as TCR-mediated signaling defects. DIAPH1-deficient PBMCs also displayed impaired transwell migration, defective STAT5 phosphorylation in response to IL-2, IL-7 and IL-15. In vitro generation/expansion of Treg cells from naïve T cells was significantly reduced. shRNA-mediated silencing of DIAPH1 in Jurkat cells reduced DIAPH1 protein level and inhibited T cell proliferation and IL-2/STAT5 axis. Additionally, NK cells from patients had diminished cytotoxic activity, function and IL-2/STAT5 axis. Lastly, DIAPH1-deficient patients' peripheral blood contained dramatically reduced numbers of all helper ILC subsets. DIAPH1 deficiency results in major functional defects in T, NK cells and helper ILCs underlining the critical role of formin DIAPH1 in the biology of those cell subsets.

Diaphanous related formin 1(DIAPH1)的功能缺失突变与癫痫发作、皮层失明和小头畸形综合征(SCBMS)有关,最近又与联合免疫缺陷有关。然而,T淋巴细胞和先天性淋巴细胞(ILCs)的缺陷程度仍有待探索。在此,我们对六名携带 DIAPH1 和 Jurkat 细胞 DIAPH1 基因敲除后两种新型功能缺失突变的患者的原发性 T 淋巴细胞、自然杀伤细胞(NK)和辅助性 ILC 进行了鉴定。突变是通过全外显子组测序确定的。通过流式细胞仪、共聚焦显微镜和实时 qPCR 对 T 细胞免疫分型、增殖、迁移、细胞因子信号转导、存活和 NK 细胞细胞毒性进行了研究。p.R351* 和 p.R322* 变体导致 DIAPH1 mRNA 和蛋白质水平显著降低。DIAPH1 缺陷的 T 细胞表现出增殖、活化以及 TCR 介导的信号缺陷。DIAPH1 基因缺陷的 PBMCs 也显示了经孔迁移障碍,以及对 IL-2、IL-7 和 IL-15 反应的 STAT5 磷酸化缺陷。在 Jurkat 细胞中 shRNA 介导的 DIAPH1 沉默降低了 DIAPH1 蛋白水平,抑制了 T 细胞增殖和 IL-2/STAT5 轴。此外,患者的NK细胞的细胞毒性活性、功能和IL-2/STAT5轴也有所减弱。最后,DIAPH1 缺乏症患者外周血中所有辅助性 ILC 亚群的数量显著减少。DIAPH1缺乏会导致T细胞、NK细胞和辅助性ILC出现重大功能缺陷,这凸显了甲形蛋白DIAPH1在这些细胞亚群的生物学中的关键作用。
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引用次数: 0
Epidermodysplasia Verruciformis and Vδ2 γδ T-cell Expansion in STK4 Deficiency. 表皮增生性疣和 STK4 缺乏症的 Vδ2 γδ T 细胞扩增
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-07 DOI: 10.1007/s10875-024-01780-z
Wenjing Ying, Xin Long, Travis Vandergriff, Hemanth Karnati, Meghan Heberton, Mingyi Chen, Xiaochuan Wang, Christian Wysocki, Xiao-Fei Kong

The clinical penetrance of infectious diseases varies considerably among patients with inborn errors of immunity (IEI), even for identical genetic defects. This variability is influenced by pathogen exposure, healthcare access and host-environment interactions. We describe here a patient in his thirties who presented with epidermodysplasia verruciformis (EV) due to infection with a weakly virulent beta-papillomavirus (HPV38) and CD4+ T-cell lymphopenia. The patient was born to consanguineous parents living in the United States. Exome sequencing identified a previously unknown biallelic STK4 stop-gain mutation (p.Trp425X). The patient had no relevant history of infectious disease during childhood other than mild wart-like lesion on the skin, but he developed diffuse large B-cell lymphoma (DLBCL) and EBV viremia with a low viral load in his thirties. Despite his low CD4+ T-cell count, the patient had normal counts of CD3+ cells, predominantly double-negative T cells (67.4%), which turned out to be Vδ2+ γδ T cells. γδ T-cell expansion has frequently been observed in the 33 reported cases with STK4 deficiency. The Vδ2 γδ T cells of this STK4-deficient patient are mostly CD45RA-CD27+CCR7+ central memory γδT cells, and their ability to proliferate in response to T-cell activation was impaired, as was that of CD4+ T cells. In conclusion, γδ T-cell expansion may act as a compensatory mechanism to combat viral infection, providing immune protection in immunocompromised individuals.

即使是基因缺陷完全相同的先天性免疫错误(IEI)患者,传染病的临床渗透率也有很大差异。这种差异受病原体接触、医疗保健途径和宿主-环境相互作用的影响。我们在此描述了一名三十多岁的患者,他因感染弱毒性的β-乳头状瘤病毒(HPV38)和CD4+T细胞淋巴细胞减少症而患上表皮增生性疣状疱疹(EV)。患者的父母是生活在美国的近亲。外显子组测序发现了一个之前未知的STK4双倍序列停止-增益突变(p.Trp425X)。患者在童年时期除了皮肤有轻度疣样病变外,没有相关的传染病史,但他在30多岁时患上了弥漫性大B细胞淋巴瘤(DLBCL)和EB病毒感染,但病毒载量很低。尽管患者的 CD4+ T 细胞数量较低,但 CD3+ 细胞数量正常,主要是双阴性 T 细胞(67.4%),这些细胞原来是 Vδ2+ γδ T 细胞。在已报道的 33 例 STK4 缺乏症病例中,经常观察到 γδ T 细胞扩增。该 STK4 缺乏症患者的 Vδ2 γδ T 细胞大多是 CD45RA-CD27+CCR7+ 中央记忆 γδT 细胞,它们对 T 细胞激活的增殖能力受损,CD4+ T 细胞的增殖能力也受损。总之,γδ T 细胞扩增可能是对抗病毒感染的一种补偿机制,可为免疫功能低下的个体提供免疫保护。
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引用次数: 0
A Cross-Sectional Study of Health-Related Quality of Life in Patients with Predominantly Antibody Deficiency. 关于主要抗体缺乏症患者健康相关生活质量的横断面研究
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-07 DOI: 10.1007/s10875-024-01781-y
Ahmed Elmoursi, Baijun Zhou, Mei-Sing Ong, Joseph S Hong, Andrew Pak, Megha Tandon, Natalia Sutherland, Daniel V DiGiacomo, Jocelyn R Farmer, Sara Barmettler

Health-related quality of life (HRQoL) measures individual well-being across physical, psychological, and social domains. Patients with predominantly antibody deficiency (PAD) are at risk for morbidity and mortality, however, the effect of these complications on HRQoL requires additional study. Patients with PAD were asked to voluntarily complete the Centers for Disease Control (CDC) HRQoL-14 Healthy Days Measure questionnaire. These results were compared to data from the CDC-initiated Behavioral Risk Factor Surveillance System (BRFSS), a cross-sectional questionnaire including questions from CDC-HRQOL-14. Statistical analyses included two-proportion Z-test, t-tests, and analysis of variance. 83 patients with PAD completed the survey. Patients were sub-stratified into mild (23.7%), moderate (35.5%), severe (40.8%), and secondary (8.4%) PAD. "Fair or poor" health status was reported in 52.6% of PAD patients. Mental health challenges ≥ 14 days/month occurred in 25% of patients. Physical health issues ≥ 14 days/month was reported in 44.7% of patients. Activity limitations were noted by 80.3% of patients. There were no statistically significant differences by PAD severity. Patients with autoimmune and inflammatory disease co-morbidities reported more mental health challenges compared to those without (78% vs. 54.3%, p = 0.02). Compared to the CDC-BRFSS data, significantly more patients with PAD reported "fair or poor" health status (53% vs 12.0%; p < 0.0001), mental health challenges (24.1% vs 14.7%; p = 0.02), and poor physical health (44.6% vs 8.0%; p < 0.0001). Patients with PAD had significantly reduced HRQoL compared to CDC-BRFSS respondents from a similar geographical region. Decreased HRQoL was prevalent across all PAD severity levels. Additional research is needed to improve HRQoL for patients with PAD.

健康相关生活质量(HRQoL)衡量个人在生理、心理和社会领域的健康状况。主要抗体缺乏症(PAD)患者有发病和死亡的风险,但这些并发症对 HRQoL 的影响还需要进一步研究。我们要求 PAD 患者自愿填写美国疾病控制中心(CDC)的 HRQoL-14 健康日测量问卷。这些结果与美国疾病控制中心发起的行为风险因素监测系统(BRFSS)的数据进行了比较,BRFSS是一个横断面问卷,其中包括CDC-HRQOL-14的问题。统计分析包括双比例 Z 检验、t 检验和方差分析。83 名 PAD 患者完成了调查。患者被细分为轻度(23.7%)、中度(35.5%)、重度(40.8%)和继发性(8.4%)PAD。52.6%的 PAD 患者健康状况为 "一般或较差"。25%的患者精神健康问题≥14天/月。44.7%的患者报告身体健康问题≥14天/月。80.3%的患者活动受限。在统计学上,PAD 严重程度的差异并不明显。与没有合并自身免疫性疾病和炎症性疾病的患者相比,合并自身免疫性疾病和炎症性疾病的患者面临更多的心理健康挑战(78% 对 54.3%,P = 0.02)。与 CDC-BRFSS 数据相比,报告健康状况为 "一般或较差 "的 PAD 患者明显更多(53% vs 12.0%;P = 0.05)。
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引用次数: 0
Description of BCG and Tuberculosis Disease in a Cohort of 79 Patients with Chronic Granulomatous Disease. 在一组 79 名慢性肉芽肿病患者中描述卡介苗和结核病。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-05 DOI: 10.1007/s10875-024-01778-7
Ximena León-Lara, Uriel Pérez-Blanco, Marco A Yamazaki-Nakashimada, Juan Carlos Bustamante-Ogando, Nancy Aguilar-Gómez, Hernán Cristerna-Tarrasa, Aidé-Tamara Staines-Boone, Omar J Saucedo-Ramírez, Eunice Fregoso-Zuñiga, Ana-Paola Macías-Robles, María R Canseco-Raymundo, Marco Venancio-Hernández, Cristina Moctezuma-Trejo, Berenise Gámez-González, Carmen Zarate-Hernández, Roselia Ramírez-Rivera, Selma Scheffler-Mendoza, Nancy Jiménez-Polvo, Leticia Hernández-Nieto, Jocelyn Carmona-Vargas, María L García-Cruz, Óscar Zavaleta-Martínez, Carla M Román-Montes, Victoria Cervantes-Parra, Anelena González-Reynoso, Rogelio Guzmán-Cotaya, Francisco Espinosa-Rosales, Patricia Saltigeral-Simental, Sara Espinosa-Padilla, Lizbeth Blancas Galicia

Purpose: Chronic granulomatous disease (CGD) is an inherited immunodeficiency caused by pathogenic variants of genes encoding the enzyme complex NADPH oxidase. In countries where tuberculosis (TB) is endemic and the Bacillus Calmette-Guérin (BCG) vaccine is routinely administered, mycobacteria are major disease-causing pathogens in CGD. However, information on the clinical evolution and treatment of mycobacterial diseases in patients with CGD is limited. The present study describes the adverse reactions to BCG and TB in Mexican patients with CGD.

Methods: Patients with CGD who were evaluated at the Immunodeficiency Laboratory of the National Institute of Pediatrics between 2013 and 2024 were included. Medical records were reviewed to determine the clinical course and treatment of adverse reactions to BCG and TB disease.

Results: A total of 79 patients with CGD were included in this study. Adverse reactions to BCG were reported in 55 (72%) of 76 patients who received the vaccine. Tuberculosis was diagnosed in 19 (24%) patients. Relapse was documented in three (10%) of 31 patients with BGC-osis and six (32%) of 19 patients with TB, despite antituberculosis treatment. There was no difference in the frequency of BCG and TB disease between patients with pathogenic variants of the X-linked CYBB gene versus recessive variants.

Conclusions: This report highlights the importance of considering TB in endemic areas and BCG complications in children with CGD to enable appropriate diagnostic and therapeutic approaches to improve prognosis and reduce the risk of relapse.

目的:慢性肉芽肿病(CGD)是一种遗传性免疫缺陷病,由编码复合 NADPH 氧化酶的基因的致病变体引起。在结核病(TB)流行和常规接种卡介苗(BCG)的国家,分枝杆菌是 CGD 的主要致病病原体。然而,有关 CGD 患者分枝杆菌疾病的临床演变和治疗的信息却很有限。本研究描述了墨西哥 CGD 患者对卡介苗和结核病的不良反应:方法:纳入2013年至2024年期间在国家儿科研究所免疫缺陷实验室接受评估的CGD患者。回顾病历以确定卡介苗和结核病不良反应的临床过程和治疗方法:本研究共纳入79名CGD患者。在 76 名接种卡介苗的患者中,55 人(72%)出现卡介苗不良反应。19名(24%)患者确诊为肺结核。尽管进行了抗结核治疗,31 名卡介苗接种阳性患者中有 3 人(10%)复发,19 名结核病患者中有 6 人(32%)复发。X连锁CYBB基因致病变体与隐性变体患者的卡介苗病和结核病发病率没有差异:本报告强调了考虑CGD患儿在结核病流行地区的结核病和卡介苗并发症的重要性,以便采取适当的诊断和治疗方法来改善预后和降低复发风险。
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引用次数: 0
Insights into Patient Experiences with Facilitated Subcutaneous Immunoglobulin Therapy in Primary Immune Deficiency: A Prospective Observational Cohort. 原发性免疫缺陷患者使用皮下注射免疫球蛋白辅助疗法的经历:前瞻性观察队列。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-05 DOI: 10.1007/s10875-024-01771-0
Ezgi Yalcin Gungoren, Melek Yorgun Altunbas, Ummugulsum Dikici, Zeynep Meric, Isil Eser Simsek, Ayca Kiykim, Salim Can, Esra Karabiber, Nalan Yakici, Fazil Orhan, Haluk Cokugras, Metin Aydogan, Oner Ozdemir, Sevgi Bilgic Eltan, Safa Baris, Ahmet Ozen, Elif Karakoc-Aydiner

Background: Immunoglobulin G replacement therapy (IgRT), intravenous (IV) and subcutaneous (SC) routes, is pivotal in treatment of primary immunodeficiencies (PID). In recent years, facilitated subcutaneous immunoglobulin (fSCIG), a combination of rHuPH20 and 10% IgG has emerged as a delivery method to combine advantages of both IV and SC.

Method: In an observational prospective cohort, we investigated patient experience with fSCIG in PID patients from 5 PID centers for up to 12 months. We assessed the efficacy and safety of this treatment with patient/caregiver- and physician-reported indicators. Additionally, we analyzed patient treatment satisfaction (TSQM-9) and quality of life (QoL).

Results: We enrolled 29 patients (22 pediatric and 7 adults; 14 females and 15 males; (median: 15, min-max: 2-40.9 years) who initiated fSCIG as IgRT-naive (n = 1), switched from conventional rapid-push 10% SCIG (n = 6) or IVIG (n = 22). Among the participants, 19 (65%) exhibited antibody deficiencies, 8 (27%) combined immunodeficiencies, and 2 (7%) immune dysregulations. Remarkably, targeted trough immunoglobulin G levels were achieved under all previous IgRTs as well as fSCIG. No severe systemic adverse drug reactions were documented, despite prevalent local (%86.45) and mild systemic (%26.45) adverse reactions were noted with fSCIG. Due to mild systemic symptoms, 2 patients switched from fSCIG to 10% SCIG. The patient satisfaction survey revealed a notable increase at 2-4th (p = 0.102); 5-8th (p = 0.006) and 9-12th (p < 0.001) months compared to the baseline. No significant trends were observed in QoL surveys.

Conclusion: fSCIG demonstrates admissable tolerability and efficacy in managing PIDs in addition to notable increase of patients' drug satisfaction with IgRT. The identified benefits support the continuation of this therapy despite the local reactions.

背景:免疫球蛋白G替代疗法(IgRT),包括静脉注射(IV)和皮下注射(SC)两种途径,是治疗原发性免疫缺陷症(PID)的关键。近年来,由rHuPH20和10% IgG组合而成的促进皮下免疫球蛋白(fSCIG)已成为一种结合静脉注射和皮下注射优点的给药方法:在一项前瞻性队列观察中,我们调查了来自 5 个 PID 中心的 PID 患者使用 fSCIG 长达 12 个月的经验。我们通过患者/护理人员和医生报告的指标评估了该疗法的疗效和安全性。此外,我们还分析了患者的治疗满意度(TSQM-9)和生活质量(QoL):我们共招募了 29 名患者(22 名儿童和 7 名成人;14 名女性和 15 名男性;(中位数:15 岁,最小-最大值:2-40.9 岁),他们开始使用 fSCIG 时均为 IgRT-naive(n = 1),从传统的快速推注 10%SCIG(n = 6)或 IVIG(n = 22)转换而来。参与者中有 19 人(65%)表现出抗体缺乏,8 人(27%)表现出合并免疫缺陷,2 人(7%)表现出免疫失调。值得注意的是,以往所有的 IgRT 和 fSCIG 均能达到目标谷值免疫球蛋白 G 水平。尽管使用 fSCIG 时普遍存在局部不良反应(86.45%)和轻度全身不良反应(26.45%),但未发现严重的全身性药物不良反应。由于出现轻微的全身症状,2 名患者从 fSCIG 改用了 10% SCIG。患者满意度调查显示,第 2-4 次(p = 0.102)、第 5-8 次(p = 0.006)和第 9-12 次(p 结论:fSCIG 在治疗 PID 方面具有可接受的耐受性和疗效,而且患者对 IgRT 的药物满意度显著提高。尽管存在局部反应,但已确定的益处支持继续使用这种疗法。
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引用次数: 0
A Novel Case of IFNAR1 Deficiency Identified a Common Canonical Splice Site Variant in DOCK8 in Western Polynesia: The Importance of Validating Variants of Unknown Significance in Under-Represented Ancestries. 西波利尼西亚的一例新型 IFNAR1 缺乏症患者发现了 DOCK8 中一个常见的规范剪接位点变异:在代表性不足的祖先中验证意义不明的变异的重要性。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-08-05 DOI: 10.1007/s10875-024-01774-x
Aimee Huynh, Paul E Gray, Anna Sullivan, Joseph Mackie, Antoine Guerin, Geetha Rao, Karrnan Pathmanandavel, Erika Della Mina, Georgina Hollway, Matthew Hobbs, Karen Enthoven, Patrick O'Young, Sam McManus, Luke H Wainwright, Megan Higgins, Fallon Noon, Melanie Wong, Paul Bastard, Qian Zhang, Jean-Laurent Casanova, Kuang-Chih Hsiao, Alberto Pinzon-Charry, Cindy S Ma, Stuart G Tangye

Advanced genomic technologies such as whole exome or whole genome sequencing have improved diagnoses and disease outcomes for individuals with genetic diseases. Yet, variants of unknown significance (VUS) require rigorous validation to establish disease causality or modification, or to exclude them from further analysis. Here, we describe a young individual of Polynesian ancestry who in the first 13 mo of life presented with SARS-CoV-2 pneumonia, severe enterovirus meningitis and adenovirus gastroenteritis, and severe adverse reaction to MMR vaccination. Genomic analysis identified a previously reported pathogenic homozygous variant in IFNAR1 (c.1156G > T, p.Glu386* LOF), which is common in Western Polynesia. Moreover, a new and putatively deleterious canonical splice site variant in DOCK8 was also found in homozygosity (c.3234 + 2T > C). This DOCK8 variant is common in Polynesians and other under-represented ancestries in large genomic databases. Despite in silico bioinformatic predictions, extensive in vitro and ex vivo analysis revealed the DOCK8 variant likely be neutral. Thus, our study reports a novel case of IFNAR1 deficiency, but also highlights the importance of functional validation of VUS, including those predicted to be deleterious, and the pressing need to expand our knowledge of the genomic architecture and landscape of under-represented populations and ancestries.

全外显子组或全基因组测序等先进的基因组技术改善了遗传病患者的诊断和疾病治疗效果。然而,意义不明的变异(VUS)需要严格的验证才能确定疾病的因果关系或改变,或将其排除在进一步分析之外。在这里,我们描述了一位波利尼西亚血统的年轻人,他在出生后的头 13 个月里患上了 SARS-CoV-2 肺炎、严重的肠道病毒脑膜炎和腺病毒肠胃炎,以及接种麻风腮疫苗后出现的严重不良反应。基因组分析发现了之前报道过的 IFNAR1 致病性同源变体(c.1156G > T, p.Glu386* LOF),该变体在西波利尼西亚很常见。此外,在 DOCK8 中也发现了一个新的、可能是有害的典型剪接位点变异(c.3234 + 2T > C)。这种 DOCK8 变异在波利尼西亚人和其他在大型基因组数据库中代表性不足的祖先中很常见。尽管进行了硅学生物信息学预测,但大量的体外和体内分析表明 DOCK8 变体可能是中性的。因此,我们的研究报告了一个 IFNAR1 缺乏症的新病例,同时也强调了对 VUS(包括那些预测为有害的 VUS)进行功能验证的重要性,以及扩大我们对代表性不足的人群和祖先的基因组结构和景观的了解的迫切需要。
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引用次数: 0
Inheritance of STING mosaicism in two half-siblings. 两个同父异母兄弟姐妹的 STING 镶嵌遗传。
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-07-30 DOI: 10.1007/s10875-024-01768-9
Alix de Becdelièvre, Laurye-Anne Eveillard, Beata Wolska-Kuśnierz, Marie-Louise Frémond
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引用次数: 0
Exclusive Characteristics of the p.E555K Dominant-Negative Variant in Autosomal Dominant E47 Deficiency. 常染色体显性 E47 缺乏症中 p.E555K 显性阴性变异的独特特征
IF 7.2 2区 医学 Q1 IMMUNOLOGY Pub Date : 2024-07-29 DOI: 10.1007/s10875-024-01758-x
Takanori Utsumi, Miyuki Tsumura, Masato Yashiro, Zenichiro Kato, Kosuke Noma, Fumiaki Sakura, Reiko Kagawa, Yoko Mizoguchi, Shuhei Karakawa, Hidenori Ohnishi, Charlotte Cunningham-Rundles, Peter D Arkwright, Masao Kobayashi, Hirokazu Kanegane, Dusan Bogunovic, Bertrand Boisson, Jean-Laurent Casanova, Takaki Asano, Satoshi Okada

Purpose: Transcription factor 3 (TCF3) encodes 2 transcription factors generated by alternative splicing, E12 and E47, which contribute to early lymphocyte differentiation. In humans, autosomal dominant (AD) E47 transcription factor deficiency is an inborn error of immunity characterized by B-cell deficiency and agammaglobulinemia. Only the recurrent de novo p.E555K pathogenic variant has been associated with this disease and acts via a dominant-negative (DN) mechanism. In this study, we describe the first Asian patient with agammaglobulinemia caused by the TCF3 p.E555K variant and provide insights into the structure and function of this variant.

Methods: TCF3 variant was identified by inborn errors of immunity-related gene panel sequencing. The variant E555K was characterized by alanine scanning of the E47 basic region and comprehensive mutational analysis focused on position 555.

Results: The patient was a 25-year-old male with B-cell deficiency, agammaglobulinemia, and mild facial dysmorphic features. We confirmed the diagnosis of AD E47 transcription factor deficiency by identifying a heterozygous missense variant, c.1663 G>A; p.E555K, in TCF3. Alanine scanning of the E47 basic region revealed the structural importance of position 555. Comprehensive mutational analysis focused on position 555 showed that only the glutamate-to-lysine substitution had a strong DN effect. 3D modeling demonstrated that this variant not only abolished hydrogen bonds involved in protein‒DNA interactions, but also inverted the charge on the surface of the E47 protein.

Conclusions: Our study reveals the causative mutation hotspot in the TCF3 DN variant and highlights the weak negative selection associated with the TCF3 gene.

目的:转录因子 3(TCF3)编码两种通过替代剪接产生的转录因子,即 E12 和 E47,它们有助于早期淋巴细胞分化。在人类中,常染色体显性(AD)E47 转录因子缺乏症是一种先天性免疫错误,其特征是 B 细胞缺乏症和农抗球蛋白血症。只有复发性的新p.E555K致病变体与这种疾病相关,并通过显性阴性(DN)机制起作用。在这项研究中,我们描述了第一例由TCF3 p.E555K变异体引起的亚洲丙种球蛋白血症患者,并对该变异体的结构和功能进行了深入研究:方法: TCF3变异体是通过先天性免疫相关基因面板测序确定的。通过对 E47 基本区的丙氨酸扫描和以 555 位为重点的全面突变分析,确定了变异体 E555K 的特征:患者是一名 25 岁的男性,患有 B 细胞缺乏症、丙种球蛋白血症和轻度面部畸形。我们在 TCF3 中发现了一个杂合子错义变异,c.1663 G>A; p.E555K,从而确诊为 AD E47 转录因子缺乏症。对 E47 基本区的丙氨酸扫描显示了 555 位的结构重要性。以 555 位为重点的全面突变分析表明,只有谷氨酸到赖氨酸的置换具有强烈的 DN 效应。三维建模表明,这种变异不仅取消了参与蛋白质-DNA相互作用的氢键,而且还使E47蛋白质表面的电荷倒置:我们的研究揭示了 TCF3 DN 变异的致病突变热点,并强调了与 TCF3 基因相关的弱负选择。
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引用次数: 0
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Journal of Clinical Immunology
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