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CF-PPI: Centroid based new feature extraction approach for Protein-Protein Interaction Prediction 基于质心的蛋白质相互作用特征提取新方法
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-03-24 DOI: 10.1080/0952813X.2022.2052189
Gunjan Sahni, Bhawna Mewara, Soniya Lalwani, Rajesh Kumar
ABSTRACT Protein is always a central part of the biology of the organism, it is essential to be familiar with the nature of proteins’ molecular level communications, in which the prediction of Protein-Protein Interactions (PPIs) plays the main role. This article proposes a new probabilistic feature extraction technique, termed Centroid-based feature (CF) abbreviated as CF-PPI, to generate a new feature from protein sequence, and then the random forest is used as a classifier to predict PPIs. CF-PPI considers the residual energy of the protein bond in the scenario to detect the interaction between proteins and resolve the protein’s length variation issue using probabilistic feature vectors. The PPI datasets which are used in this article are S. cerevisae, H. pylori, and Human, which achieved the average accuracy of 96.25%, 97.68%, and 97.69% respectively using the CF-PPI and Random Forest as a classifier and the comparison result proved superior to other existing results. The AUC score is also evaluated, additionally, a blind test is performed using five other species’ datasets which are independent of the training set with the same proposed feature approach. The experimental results prove that the CF-PPI is very promising and beneficial for looming proteomics research.
摘要蛋白质一直是生物体生物学的核心部分,了解蛋白质分子水平通讯的本质是至关重要的,其中蛋白质-蛋白质相互作用(PPIs)的预测起着主要作用。本文提出了一种新的概率特征提取技术,称为基于质心的特征(CF),简称CF- ppi,从蛋白质序列中生成新的特征,然后使用随机森林作为分类器来预测PPIs。CF-PPI考虑场景中蛋白质键的剩余能量,检测蛋白质之间的相互作用,并利用概率特征向量解决蛋白质长度变化问题。本文使用的PPI数据集为S. cerevisae、H. pylori和Human,使用CF-PPI和Random Forest作为分类器,平均准确率分别达到96.25%、97.68%和97.69%,对比结果优于其他已有结果。AUC得分也被评估,此外,使用其他五个独立于训练集的物种数据集进行盲测,这些数据集具有相同的建议特征方法。实验结果表明,CF-PPI在蛋白质组学研究中具有广阔的应用前景。
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引用次数: 2
A computer aided plant leaf classification based on optimal feature selection and enhanced recurrent neural network 基于最优特征选择和增强递归神经网络的计算机辅助植物叶片分类
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-03-08 DOI: 10.1080/0952813X.2022.2046178
Bhanuprakash Dudi, V. Rajesh
ABSTRACT This paper develops a new plant leaf classification model based on enhanced segmentation and optimal feature selection. The first process is the pre-processing, in which RGB to grey-scale conversion, histogram equalisation, and median filtering are adopted. Further, the optimised U-Net model is used for the leaf segmentation. Once the segmentation of the leaf is done, a set of features are extracted related to shape, colour, and texture. Since the length of the feature vector seems to be high that in turn affects the network training, optimal feature selection is adopted in order to reduce data dimensionality and to build robust classification models. Here, the optimal feature selection is performed by the new hybrid algorithm, namely Crow-Electric Fish Optimization (C-EFO), which is the hybridisation of Electric Fish Optimization (EFO) and Crow Search Algorithm (CSA). Finally, the deep learning model termed as Enhanced Recurrent Neural Network (E-RNN) is used for performing the classification with the improvement based on C-EFO. From the analysis, the accuracy of the proposed C-EFO+Opt-U-Net+E-RNN is 4.7% better than k-NN, 3.5% better than VGG16, 3.5% better than LSTM, and 2.75% better than RNN, respectively. Finally, the experimental results on two plant leaf databases show that the proposed method is quite effective and feasible when compared to conventional models.
摘要提出了一种基于增强分割和最优特征选择的植物叶片分类模型。首先是预处理,采用RGB到灰度的转换、直方图均衡化和中值滤波。进一步,将优化后的U-Net模型用于叶片分割。一旦对叶子进行分割,就会提取出一组与形状、颜色和纹理相关的特征。由于特征向量的长度似乎很高,从而影响网络训练,因此采用最优特征选择来降低数据维数并建立鲁棒分类模型。在这里,最优特征选择采用新的混合算法,即乌鸦-电鱼优化算法(C-EFO),它是电鱼优化算法(EFO)和乌鸦搜索算法(CSA)的杂交。最后,使用基于C-EFO改进的深度学习模型增强递归神经网络(E-RNN)进行分类。分析表明,C-EFO+Opt-U-Net+E-RNN的准确率分别比k-NN高4.7%,比VGG16高3.5%,比LSTM高3.5%,比RNN高2.75%。最后,在两个植物叶片数据库上的实验结果表明,与传统模型相比,该方法是有效可行的。
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引用次数: 4
Utopia constrained multi objective optimisation evolutionary algorithm 乌托邦约束多目标优化进化算法
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-27 DOI: 10.1080/0952813X.2022.2035826
P. Varshini, S. Baskar, S. T. Selvi
ABSTRACT A new multiobjective evolutionary optimisation algorithm (MOEA) to solve multimodal, multidimensional, nonconvex, nonlinear, dynamic multiobjective optimisation problems (MOPs) is the need of the hour. The quality of an MOEA lies in a good balance between the exploration and exploitation stages of the MOEA. Utopia constrained MOEA (U-MOEA) is proposed in this paper that improves the exploitation in the replacement step to achieve a perfect balance between exploration and exploitation. The proposed U-MOEA is tested on benchmark MOPs and a multivariable controller design problem. The performance of the proposed algorithm is also compared with other MOEAs such as NSGA-II and ICMDRA concerning hyper volume, nondomination count, combined Pareto set metric, and Cmetric . The performance metrics show better hyper volume and spread metric values for the proposed algorithm, indicating the ability in attaining trade-off region closeness along with diversified Pareto front for U-MOEA when compared to the other two algorithms. Results clearly show that the proposed U-MOEA produces good convergence, diversity characteristics with many numbers of trade-off solutions in a Pareto front.
一种新的多目标进化优化算法(MOEA)可以解决多模态、多维、非凸、非线性、动态的多目标优化问题(MOPs)。科学评价的质量取决于科学评价在勘探阶段和开发阶段之间的平衡。本文提出了乌托邦约束MOEA (Utopia constrained MOEA, U-MOEA),改进了替代阶段的开发,实现了探索与开发的完美平衡。在基准MOPs和多变量控制器设计问题上对所提出的U-MOEA进行了测试。并将该算法的性能与NSGA-II和ICMDRA等moea进行了超体积、非支配计数、组合Pareto集度量和Cmetric的比较。性能指标显示,该算法具有更好的超容量和扩展度量值,表明与其他两种算法相比,该算法能够实现U-MOEA的权衡区域接近性和多样化的Pareto前沿。结果表明,所提出的U-MOEA具有较好的收敛性和多样性,在Pareto前沿存在大量的权衡解。
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引用次数: 0
Understanding the intent behind sharing misinformation on social media 理解在社交媒体上分享错误信息背后的意图
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-16 DOI: 10.1080/0952813X.2021.1960637
Basant Agarwal, A. Agarwal, P. Harjule, Azizur Rahman
ABSTRACT Several studies have been conducted in annotating and collecting the misinformation spread on various social media sites. The misinformation spread during COVID-19 pandemic increased many folds. Understanding the reasons and intent of the misinformation during COVID-19 is a crucial task. Existing approaches have not focused on understanding the intent behind sharing misinformation in the first place. To understand the intent, we introduce a new dataset MisMemoir that apart from annotating misinformation, also collects the social context and site history of the user sharing misinformation. Utilising the established benefits of game theory in social media behaviour analysis, we deploy two-person cooperative games to understand how prominent positive feedback cues like likes and retweets are in motivating an individual to share misinformation on the platform Twitter. Experimental results demonstrate that the spread of misinformation’s primary intent is the intentional/unintentional manoeuvre to increased reach and possibly a false sense of accomplishment. Empirically, we show that in a competitive environment like social media, feedback cues like retweets and comments assume the role of ‘attention’ payoff that significantly affects the strategy of a user on Twitter to share misinformation intentionally.
在对各种社交媒体网站上传播的错误信息进行注释和收集方面进行了一些研究。在2019冠状病毒病大流行期间,错误信息的传播增加了许多倍。在2019冠状病毒病期间,了解错误信息的原因和意图是一项至关重要的任务。现有的方法并没有首先关注于理解分享错误信息背后的意图。为了理解其意图,我们引入了一个新的数据集MisMemoir,该数据集除了注释错误信息外,还收集了分享错误信息的用户的社会背景和网站历史。利用博弈论在社交媒体行为分析中的既定优势,我们部署了两人合作游戏,以了解像点赞和转发这样的积极反馈线索是如何激励个人在Twitter平台上分享错误信息的。实验结果表明,错误信息传播的主要意图是有意/无意的操作,以增加覆盖面和可能的虚假成就感。我们的经验表明,在社交媒体这样的竞争环境中,转发和评论等反馈线索承担了“注意力”回报的角色,显著影响了Twitter用户有意分享错误信息的策略。
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引用次数: 1
Guaranteed cost leaderless consensus for uncertain Markov jumping multi-agent systems 不确定马尔可夫跳跃多智能体系统的保证成本无领导共识
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960631
A. Parivallal, R. Sakthivel, Chao Wang
ABSTRACT This paper proposes an approach for the solvability of multi-agent systems with Markov jumps subject to time-varying delay and uncertainties. The primary concern of this paper is to construct a state feedback control design with a guaranteed cost function which not only ensures consensus but also assures certain amount of energy consumption. This cost function is designed with the aid of control inputs of all agents and state error among neighbouring agents. A new set of sufficient conditions for the guaranteed cost consensus of the considered Markov jumping multi-agent system (MAS) is derived in terms of linear matrix inequalities (LMIs) by constructing suitable Lyapunov-Krasovskii functional (LKF) and with the aid of Kronecker product properties. Finally, a numerical example is given to illustrate the effectiveness of the developed theoretical results.
提出了一种具有时变时滞和不确定性的马尔可夫跳变多智能体系统的可解性方法。本文主要关注的是构建一个具有保证成本函数的状态反馈控制设计,该控制设计既能保证共识,又能保证一定的能量消耗。该代价函数是借助于所有智能体的控制输入和相邻智能体之间的状态误差来设计的。通过构造合适的Lyapunov-Krasovskii泛函(LKF),并借助于Kronecker积性质,利用线性矩阵不等式(lmi)导出了考虑的马尔可夫跳跃多智能体系统(MAS)保证成本一致性的一组新的充分条件。最后,通过数值算例说明了所建立理论结果的有效性。
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引用次数: 6
Empirical analyses of genetic algorithm and grey wolf optimiser to improve their efficiency with a new multi-objective weighted fitness function for feature selection in machine learning classification: the roadmap 基于多目标加权适应度函数的遗传算法和灰狼优化器在机器学习分类中提高效率的实证分析:路线图
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960627
Azam Davahli, M. Shamsi, Golnoush Abaei, Arash Khosravi
ABSTRACT Feature selection (FS) is an optimisation problem that reduces the dimension of the dataset and increases the performance of the machine learning algorithms and classification through the selection of the optimal subset features and elimination of the redundant features. However, the huge search space is an important challenge in the FS problem. Due to their satisfactory capabilities to handle high-dimension search spaces, meta-heuristic search algorithms have recently gained much attention and become popular in the FS problem. For these algorithms, choosing a proper fitness function plays an important role. The fitness function orients the searching strategy of the algorithms to obtain best solutions. Appropriate fitness functions will help the algorithms with exploring the search space more effectively and efficiently. In this work, firstly the efficiency of two of the most outstanding and successful heuristic algorithms in the FS domain, namely genetic algorithm (GA) and grey wolf optimiser (GWO), are investigated and analysed with a single-objective fitness function. Secondly, two recent feature selection techniques based on GA and GWO, namely feature selection, weight, and parameter optimisation (FWP) and binary GWO (BGWO) with their fitness function are investigated and analysed. Thirdly, in order to remove the detected drawbacks and weaknesses of the FS algorithms and to enhance their efficiency, a new multi-objective weighted fitness function based on multiple predominant criteria has been presented. The effectiveness of the proposed fitness function on the FS algorithms is evaluated by using SVM and associative classification on 11 different large and small datasets. The experimental results show the superiority of proposed fitness function (where features were reduced and the classification performance has been improved) over single-objective fitness function and other existing fitness functions. Furthermore, another key aim of this study is to present a comprehensive study about the strengths and weaknesses of the FS algorithms which can be used as guidelines for future possible works to more improve the developments of these algorithms.
特征选择(FS)是一个优化问题,它通过选择最优子集特征和消除冗余特征来降低数据集的维数,提高机器学习算法和分类的性能。然而,巨大的搜索空间是FS问题的一个重要挑战。元启发式搜索算法由于其处理高维搜索空间的令人满意的能力,近年来在FS问题中得到了广泛的关注和应用。在这些算法中,选择合适的适应度函数起着重要的作用。适应度函数指导算法的搜索策略以获得最优解。适当的适应度函数有助于算法更有效地探索搜索空间。本文首先利用单目标适应度函数对遗传算法(genetic algorithm, GA)和灰狼优化器(grey wolf optimizer, GWO)这两种最成功的启发式算法的效率进行了研究和分析。其次,研究了基于遗传算法和GWO的两种最新特征选择技术,即特征选择、权重和参数优化(FWP)和带适应度函数的二元GWO (BGWO)。第三,为了消除现有的多目标加权适应度算法存在的缺陷和不足,提高算法的效率,提出了一种基于多优准则的多目标加权适应度函数。通过在11个不同的大小数据集上使用支持向量机和关联分类来评估所提出的适应度函数对FS算法的有效性。实验结果表明,本文提出的适应度函数(减少了特征,提高了分类性能)优于单目标适应度函数和其他现有适应度函数。此外,本研究的另一个关键目的是对FS算法的优缺点进行全面研究,这可以作为未来可能工作的指导方针,以进一步改进这些算法的发展。
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引用次数: 2
Fusing clinical and image data for detecting the severity of breast cancer by a novel hierarchical approach 融合临床和图像数据检测乳腺癌的严重程度通过一种新的分层方法
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960629
Zeinab Rahimi Rise, M. Mahootchi, Abbas Ahmadi
ABSTRACT In this paper, we developed an innovative approach combining clustering and classification routines to detect breast cancer severity (stage) and recognise whether or not it metastasises. We use Fuzzy C-mean to cluster data and a proper classification routine to recognise the severity of cancer for each cluster. In other words, we use the divide-and-conquer rule to overcome the nonlinearity of relations between features. Moreover, to have a more accurate classification in the test or real data, we impose the fuzzy membership of each data to a cluster along with other features as the set of input into the classification method. Another advantage of our research study is to use both clinical and image features and to extract new features using principal component analysis (PCA) for the classification phase. Whereas a patient might belong to more than one cluster, the results of all corresponding classification methods for the respective patient are appropriately combined to end up with the stage of the cancerous patient. Ultimately, to investigate the efficiency of the proposed hybrid approach, we use seven real data sets with both clinical and image data.
在本文中,我们开发了一种结合聚类和分类常规的创新方法来检测乳腺癌的严重程度(阶段)并识别其是否转移。我们使用模糊c均值对数据进行聚类,并使用适当的分类程序来识别每个聚类的癌症严重程度。换句话说,我们使用分治规则来克服特征之间关系的非线性。此外,为了在测试数据或真实数据中获得更准确的分类,我们将每个数据的模糊隶属度与其他特征一起作为分类方法的输入集。我们研究的另一个优点是同时使用临床和图像特征,并在分类阶段使用主成分分析(PCA)提取新的特征。尽管一个病人可能属于多个簇,但对每个病人的所有相应分类方法的结果被适当地组合起来,最终得到癌症病人的阶段。最后,为了研究所提出的混合方法的效率,我们使用了包含临床和图像数据的七个真实数据集。
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引用次数: 1
HLA: a novel hybrid model based on fixed structure and variable structure learning automata HLA:一种基于固定结构和变结构学习自动机的新型混合模型
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960630
Saber Gholami, A. Saghiri, S. M. Vahidipour, M. R. Meybodi
ABSTRACT Learning Automata (LAs) are adaptive decision-making models designed to find an appropriate action in unknown environments. LAs can be classified into two classes: variable structure and fixed structure. To the best of our knowledge, there is no hybrid model based on both of these classes. In this paper, we propose a model that brings together the benefits of both classes of LAs. In the proposed model, called an HLA, the action switching phase of a fixed structure learning automaton is fused with a variable structure learning automaton. Several computer simulations are conducted to study the performance of the proposed model with respect to the total number of rewards and action switching in addition to the convergence rate. The proposed model is compared to both variable structure and fixed structure learning automata, and in most cases, the numerical results demonstrate its superiority. In order to show the applicability of the HLA, a novel adaptive dropout mechanism in deep neural networks was suggested. The results of the simulations show that the proposed mechanism performs better than the simple dropout mechanism with respect to network accuracy.
学习自动机(LAs)是一种自适应决策模型,旨在在未知环境中找到合适的行动。LAs可分为变结构和固定结构两类。据我们所知,没有基于这两个类的混合模型。在本文中,我们提出了一个模型,将这两类人工智能的优点结合在一起。在HLA模型中,固定结构学习自动机的动作切换阶段与变结构学习自动机融合。通过计算机仿真研究了该模型在奖励总数和动作切换以及收敛速度方面的性能。将该模型与变结构和固定结构学习自动机进行了比较,在大多数情况下,数值结果表明了其优越性。为了证明HLA的适用性,提出了一种新的深度神经网络自适应退出机制。仿真结果表明,该机制在网络精度方面优于简单的dropout机制。
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引用次数: 1
Global exponential stability of memristor based uncertain neural networks with time-varying delays via Lagrange sense 基于拉格朗日感知的时变时滞记忆电阻不确定神经网络的全局指数稳定性
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960632
R. Suresh, M. Ali, Sumit Saroha
ABSTRACT This paper addresses the global exponential stability in Lagrange sense for memristor-based neural networks (MNNs) with time-varying delays. This paper attempts to derive the delay-dependent Lagrange stability conditions in terms of linear matrix inequalities by designing a suitable Lyapunov-Krasovskii functionaland used Wirtinger inequality, Jensen-based inequality for estimating the integral inequalities. The conditions which are derived confirms the globally exponential stability in Lagrange sense for the proposed MNNs and, the detailed estimation for global exponential attractive set is also given. To show the effectiveness and applicability of the proposed criteria, two numerical examples are also provided in this paper.
本文研究了具有时变延迟的基于记忆电阻的神经网络(MNNs)在拉格朗日意义下的全局指数稳定性。本文通过设计一个合适的Lyapunov-Krasovskii泛函,并利用Wirtinger不等式、jensen不等式来估计线性矩阵不等式,尝试推导线性矩阵不等式中时滞相关的Lagrange稳定性条件。所得到的条件证实了所提mnn在拉格朗日意义上的全局指数稳定性,并给出了全局指数吸引集的详细估计。为了说明所提准则的有效性和适用性,文中还给出了两个数值算例。
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引用次数: 0
Finite-time reliable sampled-data control for fractional-order memristive neural networks with quantisation 带有量化的分数阶记忆神经网络有限时间可靠采样数据控制
IF 2.2 4区 计算机科学 Q3 COMPUTER SCIENCE, ARTIFICIAL INTELLIGENCE Pub Date : 2022-02-13 DOI: 10.1080/0952813X.2021.1960626
R. Sakthivel, Karthick S.A, Chao Wang, Kanakalakshmi S
ABSTRACT This paper addresses the reliable finite-time stabilisation problem for a class of fractional-order memristor neural networks under sampled-data controller influenced by the quantisation signal and actuator failures. Precisely, the framework of observer has been initiated for estimating unmeasured state and remunerate the actuator faults with nonlinearities in the controller. Precisely, quantiser is incorporated in the network can reduce the process of transmitting data. Subsequently, activation function approach bringing together with traditional indirect Lyapunov theory endows some sufficient conditions in the frame of linear matrix inequalities to assure the finite-time stabilisation criterion for the addressed neural networks under the proposed reliable sampled-data control. Explicitly, the state feedback control and observer gain matrices are attained by solving the developed linear matrix inequalities. Convincingly, two numerical simulations are explored to substantiate the excellence and potentiality of the developed control law.
研究了一类分数阶记忆电阻神经网络在采样数据控制器受量化信号和执行器失效影响下的有限时间可靠镇定问题。精确地说,建立了观测器框架来估计未测状态,并利用控制器中的非线性补偿执行器故障。准确地说,在网络中加入量化器可以减少传输数据的过程。随后,激活函数方法结合传统的间接李雅普诺夫理论,在线性矩阵不等式的框架内给出了若干充分条件,以保证所提出的可靠采样数据控制下所寻址神经网络的有限时间稳定准则。明确地,通过求解所建立的线性矩阵不等式得到状态反馈控制矩阵和观测器增益矩阵。令人信服的是,两个数值模拟验证了所开发的控制律的优越性和潜力。
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引用次数: 0
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Journal of Experimental & Theoretical Artificial Intelligence
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