首页 > 最新文献

Journal of Plant Diseases and Protection最新文献

英文 中文
Exploring the interaction between aminobutyric acid and epigenetics in modulating ash dieback response in european ash (Fraxinus excelsior) 探索氨基丁酸与表观遗传学在调节欧洲白蜡树(Fraxinus excelsior)白蜡树枯萎病反应中的相互作用
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-14 DOI: 10.1007/s41348-024-00989-9
Hans Hoenicka, Susanne Bein, Marta Starczak, Daniel Gackowski

European ash populations face a significant threat from the invasive fungus Hymenoscyphus fraxineus, leading to ash dieback disease. The absence of resistant individuals and restrictions on biotechnological solutions hinder the ability to combat this widespread illness in the near term. Priming strategies offer an alternative approach to boost stress tolerance not only in this scenario but also in other endangered tree species by triggering plant defense mechanisms. The non-proteinogenic amino acid β-aminobutyric acid (BABA) has demonstrated potential in enhancing resistance to diverse stressors in plants. Despite limited research on forest tree species, the current study evaluated BABA’s effectiveness in mitigating ash dieback disease severity and explored potential correlations between priming treatments and epigenetic modifications. The results indicated that BABA enhanced stress tolerance in ash seedlings following inoculation with Hymenoscyphus fraxineus. BABA effectively decreased the development of necrosis associated with ash dieback disease in seedlings five months post-inoculation. Additionally, treatments involving BABA were linked to observed epigenetic alterations. Elevated levels of the non-canonical deoxynucleosides 5-(hydroxymethyl)-2'-deoxycytidine (5-hmdC) and 5-(hydroxymethyl)-2'-deoxyuridine (5-hmdU) were confirmed subsequent to the treatments. This study highlights the potential of BABA and other priming strategies in enhancing disease tolerance in forest tree species like European ash. Short-term improved stress tolerance and epigenetic changes were confirmed. Yet, the exact priming conditions for inducing long-term effects in plants, including long-living forest trees, remain unknown, posing a challenge for applying priming strategies to manage ash dieback and protect many other endangered tree species.

欧洲白蜡树种群面临着入侵真菌 Hymenoscyphus fraxineus 的巨大威胁,这种真菌会导致白蜡树枯死病。抗病个体的缺乏和生物技术解决方案的限制阻碍了在短期内防治这种广泛传播的疾病的能力。诱导策略提供了另一种方法,不仅能在这种情况下提高抗逆性,还能通过触发植物防御机制提高其他濒危树种的抗逆性。非蛋白源氨基酸 β-氨基丁酸(BABA)在增强植物对各种胁迫的抵抗力方面已被证明具有潜力。尽管对林木物种的研究有限,但目前的研究评估了 BABA 在减轻白蜡枯萎病严重程度方面的有效性,并探讨了引物处理与表观遗传修饰之间的潜在相关性。研究结果表明,BABA 能增强白蜡树幼苗在接种白蜡疫霉菌(Hymenoscyphus fraxineus)后的抗逆性。BABA 能有效减少接种后五个月白蜡树幼苗与白蜡树枯萎病相关的坏死发展。此外,涉及 BABA 的处理与观察到的表观遗传学改变有关。经证实,处理后非经典脱氧核苷5-(羟甲基)-2'-脱氧胞苷(5-hmdC)和5-(羟甲基)-2'-脱氧尿苷(5-hmdU)的水平升高。这项研究凸显了 BABA 和其他引物策略在提高欧洲白蜡树等森林树种的抗病能力方面的潜力。短期内提高的抗逆性和表观遗传学变化得到了证实。然而,诱导植物(包括长寿林木)产生长期效应的确切诱导条件仍然未知,这对应用诱导策略管理白蜡树枯萎病和保护许多其他濒危树种构成了挑战。
{"title":"Exploring the interaction between aminobutyric acid and epigenetics in modulating ash dieback response in european ash (Fraxinus excelsior)","authors":"Hans Hoenicka, Susanne Bein, Marta Starczak, Daniel Gackowski","doi":"10.1007/s41348-024-00989-9","DOIUrl":"https://doi.org/10.1007/s41348-024-00989-9","url":null,"abstract":"<p>European ash populations face a significant threat from the invasive fungus <i>Hymenoscyphus fraxineus</i>, leading to ash dieback disease. The absence of resistant individuals and restrictions on biotechnological solutions hinder the ability to combat this widespread illness in the near term. Priming strategies offer an alternative approach to boost stress tolerance not only in this scenario but also in other endangered tree species by triggering plant defense mechanisms. The non-proteinogenic amino acid β-aminobutyric acid (BABA) has demonstrated potential in enhancing resistance to diverse stressors in plants. Despite limited research on forest tree species, the current study evaluated BABA’s effectiveness in mitigating ash dieback disease severity and explored potential correlations between priming treatments and epigenetic modifications. The results indicated that BABA enhanced stress tolerance in ash seedlings following inoculation with <i>Hymenoscyphus fraxineus</i>. BABA effectively decreased the development of necrosis associated with ash dieback disease in seedlings five months post-inoculation. Additionally, treatments involving BABA were linked to observed epigenetic alterations. Elevated levels of the non-canonical deoxynucleosides 5-(hydroxymethyl)-2'-deoxycytidine (5-hmdC) and 5-(hydroxymethyl)-2'-deoxyuridine (5-hmdU) were confirmed subsequent to the treatments. This study highlights the potential of BABA and other priming strategies in enhancing disease tolerance in forest tree species like European ash. Short-term improved stress tolerance and epigenetic changes were confirmed. Yet, the exact priming conditions for inducing long-term effects in plants, including long-living forest trees, remain unknown, posing a challenge for applying priming strategies to manage ash dieback and protect many other endangered tree species.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142249957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Improved methodology for the efficient isolation of viable Meloidogyne incognita eggs 高效分离有活力的黑僵菌虫卵的改进方法
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-14 DOI: 10.1007/s41348-024-00993-z
Yuanzheng Wang, Qiang Zhang

Eggs represent a crucial life stage for Meloidogyne incognita, and viable eggs are frequently employed in nematode research. The common issue currently encountered with established technologies is that higher concentrations of sodium hypochlorite (NaOCl) result in irreversible damage to M. incognita eggs. Therefore, developing a novel method to avoid such a problem is highly important. In this study, the fresh roots of infected cucumber plants were prestored in plastic bags at 28 °C, after which M. incognita egg masses were collected from these root samples. Egg masses from roots prestored for more than 48 h could be efficiently disassociated with a low concentration (0.3%) of NaOCl in a short period of time (2 min), representing an innovative new method. Moreover, the hatchability of the harvested M. incognita eggs was maximized in this work. Additionally, if the treatment time was extended beyond 5 min, 0.3% NaOCl affected larval hatching irreversibly. Overall, these findings indicate that prestorage of infected roots in plastic bags enables the application of lower concentrations of NaOCl in M. incognita egg extraction.

卵是线虫的一个重要生命阶段,线虫研究中经常使用有活力的卵。现有技术目前遇到的共同问题是,较高浓度的次氯酸钠(NaOCl)会对线虫卵造成不可逆的损害。因此,开发一种新方法来避免这一问题非常重要。在这项研究中,受感染的黄瓜植株的新鲜根系被预装在 28 °C的塑料袋中,然后从这些根系样本中收集 M. incognita 卵块。用低浓度(0.3%)的 NaOCl 在短时间内(2 分钟)就能有效地分离预处理超过 48 小时的根中的卵块,这是一种创新的新方法。此外,这项研究还最大限度地提高了收获的白蛾卵的孵化率。此外,如果处理时间超过 5 分钟,0.3% NaOCl 会对幼虫孵化造成不可逆的影响。总之,这些研究结果表明,将受感染的根部预先储存在塑料袋中,可以在提取白僵菌卵时使用较低浓度的 NaOCl。
{"title":"Improved methodology for the efficient isolation of viable Meloidogyne incognita eggs","authors":"Yuanzheng Wang, Qiang Zhang","doi":"10.1007/s41348-024-00993-z","DOIUrl":"https://doi.org/10.1007/s41348-024-00993-z","url":null,"abstract":"<p>Eggs represent a crucial life stage for <i>Meloidogyne incognita</i>, and viable eggs are frequently employed in nematode research. The common issue currently encountered with established technologies is that higher concentrations of sodium hypochlorite (NaOCl) result in irreversible damage to <i>M. incognita</i> eggs. Therefore, developing a novel method to avoid such a problem is highly important. In this study, the fresh roots of infected cucumber plants were prestored in plastic bags at 28 °C, after which <i>M. incognita</i> egg masses were collected from these root samples. Egg masses from roots prestored for more than 48 h could be efficiently disassociated with a low concentration (0.3%) of NaOCl in a short period of time (2 min), representing an innovative new method. Moreover, the hatchability of the harvested <i>M. incognita</i> eggs was maximized in this work. Additionally, if the treatment time was extended beyond 5 min, 0.3% NaOCl affected larval hatching irreversibly. Overall, these findings indicate that prestorage of infected roots in plastic bags enables the application of lower concentrations of NaOCl in <i>M. incognita</i> egg extraction.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142249956","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Recruitment and retention of predatory coccinellid beetle, Cheilomenes sexmaculata (Fab.) using synthetic semiochemicals 使用合成半化学物质招募和留住捕食性茧甲虫--Cheilomenes sexmaculata (Fab.)
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-14 DOI: 10.1007/s41348-024-00994-y
K. Srinivas, Sachin S. Suroshe, Suresh M. Nebapure, G. N. Kiran Kumar, Chaitanya, M. C. Keerthi, P. D. Kamala Jayanthi

The six-spotted zigzag ladybird beetle, Cheilomenes sexmaculata (Coleoptera: Coccinellidae), is a prevalent generalist predator in India, commonly observed on maize and wheat during the summer and winter seasons. Ladybird beetles are important natural predators of aphids and other sap-sucking pests in maize and wheat crop ecosystems. Enhancing their abundance in the field through attractants is essential for the success of augmentative biological pest control programmes. This study aimed to evaluate the effectiveness of eight synthetic volatiles in attracting ladybird beetles using electroantennogram tests, olfactometer bioassays, and semi-field and field trials. In EAG studies, benzaldehyde and terpineol significantly triggered responses in adult males and females without any significant difference between the sexes. In dose-dependent olfactometer bioassays, at five doses (10 μg, 100 μg, 300 μg, 700 μg, and 1000 μg), C. sexmaculata adults exhibited a preference for 700 μg of benzaldehyde (74.28%) and terpineol (72.62%) over other doses. However, none of the twelve blends of these two attractive compounds showed a significant attraction to C. sexmaculata. Subsequently, all these eight synthetic semiochemicals were evaluated for ladybird beetle attraction in semi-field and field trials over different weeks. Terpineol (50.20 ± 0.31), benzaldehyde (41.67 ± 0.35), and (+)-3-carene (27.73 ± 0.33) were confirmed as attractants in semi-field trials over 3 weeks, and the same trend was noticed in the field trials over the 8 weeks. However, the attraction patterns in the field trails varied slightly between grubs and adults regarding (+)-3-carene and methyl salicylate. While adults clearly preferred (+)-3-carene over methyl salicylate, grubs showed no significant difference in attraction to these two compounds. This study lays the groundwork for developing optimal attractant formulations for C. sexmaculata, potentially enhancing the biocontrol services of this predator in its native area, such as India.

六斑人字形瓢虫(鞘翅目:褐瓢虫科)是印度一种普遍存在的天敌,在夏季和冬季的玉米和小麦上很常见。瓢虫是玉米和小麦作物生态系统中蚜虫和其他吸汁害虫的重要天敌。通过引诱剂提高瓢虫在田间的数量对于生物害虫控制辅助计划的成功至关重要。本研究旨在通过电触觉测试、嗅觉仪生物测定以及半田间和田间试验,评估八种合成挥发性物质吸引瓢虫的效果。在 EAG 研究中,苯甲醛和松油醇能显著引发成年雄虫和雌虫的反应,且两性之间无明显差异。在剂量依赖性嗅觉仪生物测定中,在五种剂量(10 μg、100 μg、300 μg、700 μg 和 1000 μg)下,雌性蛙成虫对 700 μg 苯甲醛(74.28%)和松油醇(72.62%)的偏好高于其他剂量。然而,这两种具有吸引力的化合物的 12 种混合物均未显示出对性尾柱虫的明显吸引力。随后,在不同周的半田间和田间试验中,对所有这八种合成半化学物质对瓢虫的吸引力进行了评估。在为期 3 周的半田间试验中,松油醇(50.20 ± 0.31)、苯甲醛(41.67 ± 0.35)和(+)-3-蒈烯(27.73 ± 0.33)被确认为引诱剂,在为期 8 周的田间试验中也发现了同样的趋势。不过,在田间试验中,蛴螬和成虫对(+)-3-蒈烯和水杨酸甲酯的吸引模式略有不同。成虫明显更喜欢(+)-3-蒈烯而不是水杨酸甲酯,而蛴螬对这两种化合物的吸引力则没有明显差异。这项研究为开发 C. sexmaculata 的最佳引诱剂配方奠定了基础,有可能提高这种天敌在印度等原产地的生物防治服务。
{"title":"Recruitment and retention of predatory coccinellid beetle, Cheilomenes sexmaculata (Fab.) using synthetic semiochemicals","authors":"K. Srinivas, Sachin S. Suroshe, Suresh M. Nebapure, G. N. Kiran Kumar, Chaitanya, M. C. Keerthi, P. D. Kamala Jayanthi","doi":"10.1007/s41348-024-00994-y","DOIUrl":"https://doi.org/10.1007/s41348-024-00994-y","url":null,"abstract":"<p>The six-spotted zigzag ladybird beetle, <i>Cheilomenes sexmaculata</i> (Coleoptera: Coccinellidae), is a prevalent generalist predator in India, commonly observed on maize and wheat during the summer and winter seasons. Ladybird beetles are important natural predators of aphids and other sap-sucking pests in maize and wheat crop ecosystems. Enhancing their abundance in the field through attractants is essential for the success of augmentative biological pest control programmes. This study aimed to evaluate the effectiveness of eight synthetic volatiles in attracting ladybird beetles using electroantennogram tests, olfactometer bioassays, and semi-field and field trials. In EAG studies, benzaldehyde and terpineol significantly triggered responses in adult males and females without any significant difference between the sexes. In dose-dependent olfactometer bioassays, at five doses (10 μg, 100 μg, 300 μg, 700 μg, and 1000 μg), <i>C. sexmaculata</i> adults exhibited a preference for 700 μg of benzaldehyde (74.28%) and terpineol (72.62%) over other doses. However, none of the twelve blends of these two attractive compounds showed a significant attraction to <i>C. sexmaculata</i>. Subsequently, all these eight synthetic semiochemicals were evaluated for ladybird beetle attraction in semi-field and field trials over different weeks. Terpineol (50.20 ± 0.31), benzaldehyde (41.67 ± 0.35), and (+)-3-carene (27.73 ± 0.33) were confirmed as attractants in semi-field trials over 3 weeks, and the same trend was noticed in the field trials over the 8 weeks. However, the attraction patterns in the field trails varied slightly between grubs and adults regarding (+)-3-carene and methyl salicylate. While adults clearly preferred (+)-3-carene over methyl salicylate, grubs showed no significant difference in attraction to these two compounds. This study lays the groundwork for developing optimal attractant formulations for <i>C. sexmaculata</i>, potentially enhancing the biocontrol services of this predator in its native area, such as India.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-14","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142250125","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Emerging strategies in plant virus disease control: insights from the 56th meeting of the DPG working group “Viruskrankheiten der Pflanzen” 植物病毒病控制的新战略:DPG "植物病毒病 "工作组第 56 次会议的启示
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-12 DOI: 10.1007/s41348-024-00992-0
Björn Krenz, Annette Niehl, Gabi Krczal

Transforming agriculture into a sustainable system includes innovative, safe, and sustainable management of virus diseases. Advances in cutting-edge biotechnological tools, such as CRISPR/Cas9 genome editing (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9), environmental RNA interference (RNAi), and the application of natural antiviral compounds, present promising new strategies for effective virus control. Highly sensitive and validated diagnostic tools allow early detection and targeted management strategies. The 56th meeting of the Deutsche Phytomedizinische Gesellschaft (DPG) working group on "Viruskrankheiten der Pflanzen" tackled the latest developments and challenges in the field of plant virology in Germany, covering topics on genomic technologies, diagnostics and quarantine regulations, virus–host interaction, virus diversity, plant immunity, and more. A special emphasis lay on the applied side of plant virology, as here, pressing agricultural challenges have to be met. In this perspectives paper, we give a summary on the conference’s findings and highlight possibilities to derive novel strategies for disease control.

将农业转变为可持续系统包括对病毒疾病进行创新、安全和可持续的管理。尖端生物技术工具的进步,如 CRISPR/Cas9 基因组编辑(聚类规则间隔短回文重复序列/CRISPR 相关蛋白 9)、环境 RNA 干扰(RNAi)以及天然抗病毒化合物的应用,为有效控制病毒提供了前景广阔的新策略。高灵敏度和经过验证的诊断工具可以实现早期检测和有针对性的管理策略。德国植物医学协会(DPG)"植物病毒 "工作组第 56 次会议探讨了德国植物病毒学领域的最新发展和挑战,涉及基因组技术、诊断和检疫法规、病毒与宿主的相互作用、病毒多样性、植物免疫等主题。其中特别强调了植物病毒学的应用方面,因为在这方面必须应对紧迫的农业挑战。在这篇视角论文中,我们总结了会议的研究成果,并强调了制定新型疾病控制策略的可能性。
{"title":"Emerging strategies in plant virus disease control: insights from the 56th meeting of the DPG working group “Viruskrankheiten der Pflanzen”","authors":"Björn Krenz, Annette Niehl, Gabi Krczal","doi":"10.1007/s41348-024-00992-0","DOIUrl":"https://doi.org/10.1007/s41348-024-00992-0","url":null,"abstract":"<p>Transforming agriculture into a sustainable system includes innovative, safe, and sustainable management of virus diseases. Advances in cutting-edge biotechnological tools, such as CRISPR/Cas9 genome editing (clustered regularly interspaced short palindromic repeats/CRISPR-associated protein 9), environmental RNA interference (RNAi), and the application of natural antiviral compounds, present promising new strategies for effective virus control. Highly sensitive and validated diagnostic tools allow early detection and targeted management strategies. The 56th meeting of the Deutsche Phytomedizinische Gesellschaft (DPG) working group on \"Viruskrankheiten der Pflanzen\" tackled the latest developments and challenges in the field of plant virology in Germany, covering topics on genomic technologies, diagnostics and quarantine regulations, virus–host interaction, virus diversity, plant immunity, and more. A special emphasis lay on the applied side of plant virology, as here, pressing agricultural challenges have to be met. In this perspectives paper, we give a summary on the conference’s findings and highlight possibilities to derive novel strategies for disease control.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142226520","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of full-sibling families from natural single-tree ash progenies based on SSR markers and genome-wide SNPs 基于 SSR 标记和全基因组 SNP,从天然单树白蜡后代中鉴定全同胞家族
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-11 DOI: 10.1007/s41348-024-00966-2
Melina Krautwurst, Franziska Past, Birgit Kersten, Ben Bubner, Niels A. Müller

Common ash, Fraxinus excelsior, is threatened by the invasive pathogen Hymenoscyphus fraxineus, which causes ash dieback. The pathogen is rapidly spreading throughout Europe with severe ecological and economic consequences. Multiple studies have presented evidence for the existence of a small fraction of genotypes with low susceptibility. Such genotypes can be targets for natural and artificial selection to conserve F. excelsior and associated ecosystems. To resolve the genetic architecture of variation in susceptibility it is necessary to analyze segregating populations. Here we employed about 1000 individuals of each of four single-tree progenies from potentially tolerant mother trees to identify full-sibling (full-sib) families. To this end, we first genotyped all 4000 individuals and the four mothers with eight SSR markers. We then used the program COLONY to predict full-sibs without knowledge of the paternal genotypes. For each single-tree progeny, COLONY predicted dozens of full-sib families, ranging from 3–166 individuals. In the next step, 910 individuals assigned to full-sib families with more than 28 individuals were subjected to high-resolution genotyping using over one million genome-wide SNPs which were identified with Illumina low-coverage resequencing. Using these SNP genotyping data in principal component analyses we were able to assign individuals to full-sib families with high confidence. Together the analyses revealed five large families with 73–212 individuals. These can be used to generate genetic linkage maps and to perform quantitative trait locus analyses for ash dieback susceptibility. The elucidation of the genetic basis of natural variation in ash may support breeding and conservation efforts and may contribute to more robust forest ecosystems.

普通白蜡树(Fraxinus excelsior)正受到入侵病原体 Hymenoscyphus fraxineus 的威胁,这种病原体会导致白蜡树枯死。这种病原体正在欧洲迅速蔓延,造成了严重的生态和经济后果。多项研究表明,有一小部分基因型对该病原体的易感性较低。这些基因型可以成为自然选择和人工选择的目标,以保护杉木和相关生态系统。要解决易感性变异的遗传结构问题,必须对分离种群进行分析。在这里,我们从可能具有抗逆性的母树中选取了四株单株后代中的每一株约 1000 个个体,以确定全同胞(全同胞)家系。为此,我们首先用 8 个 SSR 标记对所有 4000 个个体和 4 个母本进行了基因分型。然后,我们使用 COLONY 程序在不知道父本基因型的情况下预测全同源后代。对于每个单树后代,COLONY 都能预测出几十个全同父异母家族,范围在 3-166 个个体之间。下一步,对分配到 28 个以上全兄弟家族的 910 个个体进行了高分辨率基因分型,使用了通过 Illumina 低覆盖率重测序鉴定的 100 多万个全基因组 SNP。在主成分分析中使用这些 SNP 基因分型数据,我们能够以较高的置信度将个体归入全兄弟家族。分析结果显示,共有 5 个大家族,成员人数为 73-212 人。这些数据可用于生成遗传连锁图谱,并对白蜡枯死易感性进行定量性状位点分析。阐明白蜡自然变异的遗传基础可支持育种和保护工作,并有助于建立更稳健的森林生态系统。
{"title":"Identification of full-sibling families from natural single-tree ash progenies based on SSR markers and genome-wide SNPs","authors":"Melina Krautwurst, Franziska Past, Birgit Kersten, Ben Bubner, Niels A. Müller","doi":"10.1007/s41348-024-00966-2","DOIUrl":"https://doi.org/10.1007/s41348-024-00966-2","url":null,"abstract":"<p>Common ash, <i>Fraxinus excelsior</i>, is threatened by the invasive pathogen <i>Hymenoscyphus fraxineus</i>, which causes ash dieback. The pathogen is rapidly spreading throughout Europe with severe ecological and economic consequences. Multiple studies have presented evidence for the existence of a small fraction of genotypes with low susceptibility. Such genotypes can be targets for natural and artificial selection to conserve <i>F. excelsior</i> and associated ecosystems. To resolve the genetic architecture of variation in susceptibility it is necessary to analyze segregating populations. Here we employed about 1000 individuals of each of four single-tree progenies from potentially tolerant mother trees to identify full-sibling (full-sib) families. To this end, we first genotyped all 4000 individuals and the four mothers with eight SSR markers. We then used the program COLONY to predict full-sibs without knowledge of the paternal genotypes. For each single-tree progeny, COLONY predicted dozens of full-sib families, ranging from 3–166 individuals. In the next step, 910 individuals assigned to full-sib families with more than 28 individuals were subjected to high-resolution genotyping using over one million genome-wide SNPs which were identified with Illumina low-coverage resequencing. Using these SNP genotyping data in principal component analyses we were able to assign individuals to full-sib families with high confidence. Together the analyses revealed five large families with 73–212 individuals. These can be used to generate genetic linkage maps and to perform quantitative trait locus analyses for ash dieback susceptibility. The elucidation of the genetic basis of natural variation in ash may support breeding and conservation efforts and may contribute to more robust forest ecosystems.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142226519","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Soil classification, crop prediction, and disease detection using ML and DL–“agro insights” 利用 ML 和 DL 进行土壤分类、作物预测和疾病检测--"农业洞察力"
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-06 DOI: 10.1007/s41348-024-00991-1
Tamilarasi Kathirvel Mururgan, Penta Revanth

India, renowned for its rich agricultural heritage, is ranked among the three world crop suppliers. Farmers face numerous challenges, including difficulty in selecting profitable crops suited to their soil and unpredictable weather conditions that affect yield predictions. To address these issues, various analytical methods have been employed in agricultural yield-prediction studies. Plant diseases are prevalent in agriculture, prompting the need for effective detection methods. Therefore, in this study, the proposed agro insights’ model aimed at assisting farmers in predicting or deciding the type of soil and crop to sow, which is implemented through ML and DL methods to predict the optimal crop to be cultivated by deciding diverse input variables such as the region, soil, and crop type. The accuracy of soil classification and crop recommendation is 93.3% using random forest technique and crop disease detection is 96% using CNN technique.

印度以其丰富的农业遗产而闻名,是世界三大作物供应国之一。农民面临着众多挑战,包括难以选择适合其土壤的有利可图的作物,以及影响产量预测的不可预测的天气条件。为了解决这些问题,农业产量预测研究采用了各种分析方法。植物病害在农业中十分普遍,因此需要有效的检测方法。因此,在本研究中,提出的 "农业洞察力 "模型旨在帮助农民预测或决定播种的土壤和作物类型,该模型通过 ML 和 DL 方法实现,通过决定不同的输入变量(如地区、土壤和作物类型)来预测最佳作物种植。使用随机森林技术,土壤分类和作物推荐的准确率为 93.3%;使用 CNN 技术,作物病害检测的准确率为 96%。
{"title":"Soil classification, crop prediction, and disease detection using ML and DL–“agro insights”","authors":"Tamilarasi Kathirvel Mururgan, Penta Revanth","doi":"10.1007/s41348-024-00991-1","DOIUrl":"https://doi.org/10.1007/s41348-024-00991-1","url":null,"abstract":"<p>India, renowned for its rich agricultural heritage, is ranked among the three world crop suppliers. Farmers face numerous challenges, including difficulty in selecting profitable crops suited to their soil and unpredictable weather conditions that affect yield predictions. To address these issues, various analytical methods have been employed in agricultural yield-prediction studies. Plant diseases are prevalent in agriculture, prompting the need for effective detection methods. Therefore, in this study, the proposed agro insights’ model aimed at assisting farmers in predicting or deciding the type of soil and crop to sow, which is implemented through ML and DL methods to predict the optimal crop to be cultivated by deciding diverse input variables such as the region, soil, and crop type. The accuracy of soil classification and crop recommendation is 93.3% using random forest technique and crop disease detection is 96% using CNN technique.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-06","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142207713","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Insecticidal effects of compounds isolated from Trifolium pratense on Myzus persicae, Brevicoryne brassicae and Tetranychus cinnabarinus 从三叶草中分离出的化合物对柿蕈蚊、黄铜蝽和朱砂蝇的杀虫作用
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-05 DOI: 10.1007/s41348-024-00979-x
Zhaoben Qi, Aifeng Peng, Haitao Yu, Yitong Li, Chenpeng Zhang, Quan Liu

Aphids and mites, which cause severe yield reductions, are commonly controlled by commercial insecticides, which has led to serious environmental problems. Research is currently being performed on developing safe and low-toxicity botanical pesticides, which are an effective way to reduce environmental pollution and pesticide residue in food. Trifolium pratense L. is a globally important forage and vulnerable to aphids and mites. The differences in secondary metabolites between infested leaves (ILs) and pest-free leaves (PFLs) of T. pratense were investigated by gas chromatography–mass spectrometry (GC–MS) and high-performance liquid chromatography (HPLC) to determine the chemical defense mechanism. The results revealed significant differences in the contents of fatty acids and isoflavones. The contents of neophytadiene, methyl linoleate, daidzein, genistein, formononetin, and biochanin A in ILs were significantly increased compared with PFLs. The insecticidal compounds were further separated by bioassay-directed fractionation against Myzus persicae Sulzer, Brevicoryne brassicae Linnaeus and Tetranychus cinnabarinus Boisduval. The ethyl acetate (EtOAc) extract had greater insecticidal activity than the petroleum ether (PE) extract. Notably, there was no significant difference between the EtOAc extract and avermectin at 1.00 mg/mL against T. cinnabarinus after 48 h. The following ten compounds were obtained from the PE and EtOAc extracts: prunetin (1), genistein (2), formononetin (3), biochanin A (4), 8-hydroxy-4',7-dimethoxyisoflavane (5), L-maackiain (6), 4-hydroxy-3-methoxy-(6aR,11aR)-8,9-methylenedioxypterocarpan (7), β-sitosterol (8), linoleic acid (9) and linoleic acid monoglyceride (10). Compound 7 exhibited the highest level of insecticidal activity, which was close to that of avermectin. The results indicated that isoflavones were the main active insecticidal components.

蚜虫和螨虫会造成严重减产,通常使用商业杀虫剂来控制,这导致了严重的环境问题。目前正在研究开发安全低毒的植物杀虫剂,这是减少环境污染和食物中农药残留的有效方法。Trifolium pratense L. 是全球重要的牧草,易受蚜虫和螨虫的危害。本研究采用气相色谱-质谱法(GC-MS)和高效液相色谱法(HPLC)研究了有虫害叶片(ILs)和无虫害叶片(PFLs)之间次生代谢物的差异,以确定其化学防御机制。结果表明,脂肪酸和异黄酮的含量存在明显差异。与 PFLs 相比,ILs 中新茶黄素、亚油酸甲酯、大豆泽素、染料木素、福莫宁素和生物茶素 A 的含量明显增加。通过生物测定定向分馏,进一步分离出了对 Myzus persicae Sulzer、Brevicoryne brassicae Linnaeus 和 Tetranychus cinnabarinus Boisduval 有杀虫作用的化合物。乙酸乙酯(EtOAc)提取物的杀虫活性高于石油醚(PE)提取物。值得注意的是,在 48 小时后,乙酸乙酯提取物和 1.00 mg/mL 的阿维菌素对朱砂金龟子的杀虫活性没有明显差异。从 PE 和 EtOAc 提取物中获得了以下 10 种化合物:prunetin(1)、genistein(2)、formononetin(3)、biochanin A(4)、8-hydroxy-4',7-dimethoxyisoflavane(5)、L-maackiain(6)、4-hydroxy-3-methoxy-(6aR,11aR)-8,9-methylenedioxypterocarpan (7)、β-谷甾醇 (8)、亚油酸 (9) 和亚油酸单甘酯 (10)。化合物 7 的杀虫活性最高,接近阿维菌素。结果表明,异黄酮是主要的活性杀虫成分。
{"title":"Insecticidal effects of compounds isolated from Trifolium pratense on Myzus persicae, Brevicoryne brassicae and Tetranychus cinnabarinus","authors":"Zhaoben Qi, Aifeng Peng, Haitao Yu, Yitong Li, Chenpeng Zhang, Quan Liu","doi":"10.1007/s41348-024-00979-x","DOIUrl":"https://doi.org/10.1007/s41348-024-00979-x","url":null,"abstract":"<p>Aphids and mites, which cause severe yield reductions, are commonly controlled by commercial insecticides, which has led to serious environmental problems. Research is currently being performed on developing safe and low-toxicity botanical pesticides, which are an effective way to reduce environmental pollution and pesticide residue in food. <i>Trifolium pratense</i> L. is a globally important forage and vulnerable to aphids and mites. The differences in secondary metabolites between infested leaves (ILs) and pest-free leaves (PFLs) of <i>T. pratense</i> were investigated by gas chromatography–mass spectrometry (GC–MS) and high-performance liquid chromatography (HPLC) to determine the chemical defense mechanism. The results revealed significant differences in the contents of fatty acids and isoflavones. The contents of neophytadiene, methyl linoleate, daidzein, genistein, formononetin, and biochanin A in ILs were significantly increased compared with PFLs. The insecticidal compounds were further separated by bioassay-directed fractionation against <i>Myzus persicae</i> Sulzer, <i>Brevicoryne brassicae</i> Linnaeus and <i>Tetranychus cinnabarinus</i> Boisduval. The ethyl acetate (EtOAc) extract had greater insecticidal activity than the petroleum ether (PE) extract. Notably, there was no significant difference between the EtOAc extract and avermectin at 1.00 mg/mL against <i>T. cinnabarinus</i> after 48 h. The following ten compounds were obtained from the PE and EtOAc extracts: prunetin (<b>1</b>), genistein (<b>2</b>), formononetin (<b>3</b>), biochanin A (<b>4</b>), 8-hydroxy-4',7-dimethoxyisoflavane (<b>5</b>), L-maackiain (<b>6</b>), 4-hydroxy-3-methoxy-(6aR,11aR)-8,9-methylenedioxypterocarpan (<b>7</b>), β-sitosterol (<b>8</b>), linoleic acid (<b>9</b>) and linoleic acid monoglyceride (<b>10</b>). Compound <b>7</b> exhibited the highest level of insecticidal activity, which was close to that of avermectin. The results indicated that isoflavones were the main active insecticidal components.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-05","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142207714","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Second crop options for Pratylenchus brachyurus management on soybean 管理大豆上 Pratylenchus brachyurus 的第二茬作物方案
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-09-02 DOI: 10.1007/s41348-024-00990-2
Bruno Scentinela Jacintho Paes, Gabriela de Sousa Carvalho, Mário Massayuki Inomoto

The lesion nematode Pratylenchus brachyurus is a major pest of soybean in Brazil, managed by treating seed with nematicides and replacing corn for pearl millet (Pennisetum glaucum) and rattlepods (Crotalaria spp.) as a second crop. However, these cover crops are not profitable, leading growers to consider alternatives as cowpea, sunflower, and sorghum. In fact, although cowpea and sorghum are susceptible to P. brachyurus, cowpea is widely cultivated in the Brazilian Cerrado, where P. brachyurus is prevalent, and the forage sorghum ‘BRS Ponta Negra’ has been recommended for P. brachyurus management, based on field observations. Considering the increasing importance of cowpea in the Brazilian Cerrado, three pot trials were carried out to evaluate the host status of modern cowpea cultivars for P. brachyurus. Additionally, two pot trials were carried out to evaluate the effect of cowpea, sunflower, forage sorghum ‘BRS Ponta Negra’, pearl millet and showy rattlepod on soybean production in soil with P. brachyurus, taking account the scarcity of studies that prove the benefits of replacing corn for resistant crops on soybean grain production. The five cowpea cultivars tested were highly suitable hosts for P. brachyurus, supporting previous findings. Therefore, cowpea should be avoided in infested growing areas, especially as a second crop after soybean. Among the cover crops, only showy rattlepod consistently decreased P. brachyurus population density and increased soybean grain production, proving to be more effective than pearl millet in managing P. brachyurus.

病害线虫 Pratylenchus brachyurus 是巴西大豆的主要害虫,管理方法是用杀线虫剂处理种子,并用珍珠粟(Pennisetum glaucum)和鼠李(Crotalaria spp.)然而,这些覆盖作物无利可图,导致种植者考虑种植豇豆、向日葵和高粱等替代作物。事实上,虽然豇豆和高粱都易感红铃虫,但豇豆在红铃虫盛行的巴西塞拉多地区广泛种植,而且根据实地观察,"BRS Ponta Negra "饲用高粱已被推荐用于红铃虫的防治。考虑到豇豆在巴西塞拉多地区的重要性与日俱增,研究人员进行了三次盆栽试验,以评估现代豇豆栽培品种对红铃虫的寄主状况。此外,考虑到很少有研究证明用抗性作物替代玉米对大豆谷物产量的益处,我们还进行了两项盆栽试验,以评估豇豆、向日葵、饲用高粱 "BRS Ponta Negra"、珍珠粟和秀丽鼠李对大豆产量的影响。测试的五个豇豆栽培品种都非常适合褐飞虱寄主,这与之前的研究结果相吻合。因此,豇豆应避免种植在有虫害的地区,尤其是作为大豆之后的第二茬作物。在各种覆盖作物中,只有秀丽鼠李能持续降低褐飞虱的种群密度并提高大豆产量,证明它比珍珠粟更能有效控制褐飞虱。
{"title":"Second crop options for Pratylenchus brachyurus management on soybean","authors":"Bruno Scentinela Jacintho Paes, Gabriela de Sousa Carvalho, Mário Massayuki Inomoto","doi":"10.1007/s41348-024-00990-2","DOIUrl":"https://doi.org/10.1007/s41348-024-00990-2","url":null,"abstract":"<p>The lesion nematode <i>Pratylenchus brachyurus</i> is a major pest of soybean in Brazil, managed by treating seed with nematicides and replacing corn for pearl millet (<i>Pennisetum glaucum</i>) and rattlepods (<i>Crotalaria</i> spp.) as a second crop. However, these cover crops are not profitable, leading growers to consider alternatives as cowpea, sunflower, and sorghum. In fact, although cowpea and sorghum are susceptible to <i>P. brachyurus</i>, cowpea is widely cultivated in the Brazilian Cerrado, where <i>P. brachyurus</i> is prevalent, and the forage sorghum ‘BRS Ponta Negra’ has been recommended for <i>P</i>. <i>brachyurus</i> management, based on field observations. Considering the increasing importance of cowpea in the Brazilian Cerrado, three pot trials were carried out to evaluate the host status of modern cowpea cultivars for <i>P. brachyurus</i>. Additionally, two pot trials were carried out to evaluate the effect of cowpea, sunflower, forage sorghum ‘BRS Ponta Negra’, pearl millet and showy rattlepod on soybean production in soil with <i>P. brachyurus</i>, taking account the scarcity of studies that prove the benefits of replacing corn for resistant crops on soybean grain production. The five cowpea cultivars tested were highly suitable hosts for <i>P. brachyurus</i>, supporting previous findings. Therefore, cowpea should be avoided in infested growing areas, especially as a second crop after soybean. Among the cover crops, only showy rattlepod consistently decreased <i>P. brachyurus</i> population density and increased soybean grain production, proving to be more effective than pearl millet in managing <i>P. brachyurus</i>.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-09-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142227721","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Rice black bug (Scotinophara sp.) status and ecological pest management practices in rice 水稻黑穗病(Scotinophara sp.)
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-08-21 DOI: 10.1007/s41348-024-00976-0
G. Leena, P. Anandhi, V. Ambethgar, S. Elamathi, K. Subrahmaniyan, Patil Santosh Ganapati, Sheela Venugopal

Rice (Oryza sativa) is a staple food worldwide, yet faces significant threats from over 100 insect species, including 20 economic pests that are causing serious yield loss to rice plants. In many Asian nations, stink bugs belonging to the genus Scotinophara coarctata (Fabricius, Entomolgia systematica emendata et aucta, secundum classes, ordines, genera, species adjectis synonymis, locis, observationibus, descriptionibus, Suppl.: 1–572. Proft, Hafniae, 1798), Pentatomidae, Hemiptera are a common pest of rice. Black bug sucks the sap from the rice plants, and heavily infested rice plants turn yellowish brown and further die causing “bug burned” symptoms. Excessive sucking by more number of bugs causes maximum damage to rice crop in all affected areas. This review is focused on the nature of damage, taxonomy, alternate host, biology, light trap studies, influence of host varieties on the population development of black bug, EIL, ETL, yield loss, sustainable integrated BB management including cultural practices, exploiting the pest diversionary approaches for the management of black bug, biological control by parasites, predators and entomogenous fungi, efficacy of insecticides and botanicals in the management. This review is focused on the sustainable pest managementpractices for black bug in rice.

水稻(Oryza sativa)是全世界的主食,但却面临着 100 多种昆虫的严重威胁,其中包括 20 种经济害虫,它们给水稻造成了严重的产量损失。在许多亚洲国家,属于 Scotinophara coarctata 属的臭虫(Fabricius,Entomolgia systematica emendata et aucta,secundum classes,ordines,genera,species adjectis synonymis,locis,observationibus,descriptionibus,Suppl.Proft,Hafniae,1798),五蠹科,半翅目,是水稻的常见害虫。黑蝽会吸食稻株的汁液,虫害严重的稻株会变成黄褐色并进一步枯死,造成 "虫烧 "症状。更多虫子的过度吸食会对所有受害地区的水稻作物造成最大程度的损害。本综述的重点是危害的性质、分类、替代寄主、生物学、光诱捕器研究、寄主品种对黑蝽种群发展的影响、EIL、ETL、产量损失、可持续的 BB 综合管理(包括文化实践)、利用害虫转移方法管理黑蝽、寄生虫、捕食者和昆虫真菌的生物防治、杀虫剂和植物药在管理中的功效。本综述侧重于水稻黑潮虫的可持续虫害管理实践。
{"title":"Rice black bug (Scotinophara sp.) status and ecological pest management practices in rice","authors":"G. Leena, P. Anandhi, V. Ambethgar, S. Elamathi, K. Subrahmaniyan, Patil Santosh Ganapati, Sheela Venugopal","doi":"10.1007/s41348-024-00976-0","DOIUrl":"https://doi.org/10.1007/s41348-024-00976-0","url":null,"abstract":"<p>Rice (<i>Oryza sativa</i>) is a staple food worldwide, yet faces significant threats from over 100 insect species, including 20 economic pests that are causing serious yield loss to rice plants. In many Asian nations, stink bugs belonging to the genus <i>Scotinophara coarctata</i> (Fabricius, Entomolgia systematica emendata et aucta, secundum classes, ordines, genera, species adjectis synonymis, locis, observationibus, descriptionibus, Suppl.: 1–572. Proft, Hafniae, 1798), Pentatomidae, Hemiptera are a common pest of rice. Black bug sucks the sap from the rice plants, and heavily infested rice plants turn yellowish brown and further die causing “bug burned” symptoms. Excessive sucking by more number of bugs causes maximum damage to rice crop in all affected areas. This review is focused on the nature of damage, taxonomy, alternate host, biology, light trap studies, influence of host varieties on the population development of black bug, EIL, ETL, yield loss, sustainable integrated BB management including cultural practices, exploiting the pest diversionary approaches for the management of black bug, biological control by parasites, predators and entomogenous fungi, efficacy of insecticides and botanicals in the management. This review is focused on the sustainable pest management\u0000practices for black bug in rice.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142207715","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Chemometric analysis using infrared spectroscopy and PCA-LDA for early diagnosis of Fusarium oxysporum in tomato 利用红外光谱和 PCA-LDA 进行化学计量分析,早期诊断番茄中的镰孢菌
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-08-21 DOI: 10.1007/s41348-024-00978-y
Laura J. García-Barrera, Stefani A. Meza-Zamora, Juan C. Noa-Carrazana, Raúl J. Delgado-Macuil

The interaction of phytopathogenic organisms and plants generates physiological and biochemical changes in the latter. However, the effects on the plants are rarely visible in the infection first stages. Novel optical techniques can help to improve the early detection of phytopathogenic organisms in tomato without the plant sacrifice. In this work, infrared spectroscopy and chemometric methods were used to determinate the effects of Fusarium oxysporum in tomato plants cultivated in pots, analyzing fully expanded leaves. Fusarium oxysporum was molecular identified and its pathogenicity was tested in vitro. Three plants treatments were evaluated for 55 days post infection in pots in greenhouse under semi-controlled conditions: control, water stress, and fungal inoculated (1 × 108 conidia/mL). Phenotypical results were followed twice a week for eight weeks; the phenotypical characteristics were very similar in almost all sampling times except in height, especially in the first 27 days post infection, after this time the height was similar in the three treatments. The stalk and root-dried matter analysis do not show statistical differences; however, the infrared results, acquired from the adaxial surface of leaves, show differences in peaks associated with salicylic acid, jasmonic acid, abscisic acid, and proline in the first 27 days post infection. The principal component analysis–linear discriminant analysis were used to distinguish subtle biochemical changes between the three treatments, facilitating the early detection of the pathogen and its monitoring over time.

植物病原生物与植物的相互作用会使后者发生生理和生化变化。然而,在感染初期,植物受到的影响很少能被察觉。新型光学技术有助于在不牺牲植株的情况下提高对番茄中植物病原菌的早期检测。本研究采用红外光谱法和化学计量学方法,通过分析完全展开的叶片,确定氧孢镰刀菌对盆栽番茄植株的影响。对镰孢菌进行了分子鉴定,并对其致病性进行了体外测试。在半控制条件下,在温室盆栽中对感染后 55 天的三种植物处理进行了评估:对照、水胁迫和真菌接种(1 × 108 分生孢子/毫升)。在八周的时间里,每周两次对表型结果进行跟踪;除高度外,几乎所有取样时间的表型特征都非常相似,尤其是在感染后的前 27 天,此后三种处理的高度相似。茎秆和根干物质分析未显示出统计学差异;但从叶片正面获取的红外结果显示,在感染后的前 27 天,与水杨酸、茉莉酸、脱落酸和脯氨酸相关的峰值存在差异。主成分分析和线性判别分析用于区分三种处理之间的细微生化变化,从而有助于早期发现病原体并对其进行长期监测。
{"title":"Chemometric analysis using infrared spectroscopy and PCA-LDA for early diagnosis of Fusarium oxysporum in tomato","authors":"Laura J. García-Barrera, Stefani A. Meza-Zamora, Juan C. Noa-Carrazana, Raúl J. Delgado-Macuil","doi":"10.1007/s41348-024-00978-y","DOIUrl":"https://doi.org/10.1007/s41348-024-00978-y","url":null,"abstract":"<p>The interaction of phytopathogenic organisms and plants generates physiological and biochemical changes in the latter. However, the effects on the plants are rarely visible in the infection first stages. Novel optical techniques can help to improve the early detection of phytopathogenic organisms in tomato without the plant sacrifice. In this work, infrared spectroscopy and chemometric methods were used to determinate the effects of <i>Fusarium oxysporum</i> in tomato plants cultivated in pots, analyzing fully expanded leaves. <i>Fusarium oxysporum</i> was molecular identified and its pathogenicity was tested in vitro. Three plants treatments were evaluated for 55 days post infection in pots in greenhouse under semi-controlled conditions: control, water stress, and fungal inoculated (1 × 10<sup>8</sup> conidia/mL). Phenotypical results were followed twice a week for eight weeks; the phenotypical characteristics were very similar in almost all sampling times except in height, especially in the first 27 days post infection, after this time the height was similar in the three treatments. The stalk and root-dried matter analysis do not show statistical differences; however, the infrared results, acquired from the adaxial surface of leaves, show differences in peaks associated with salicylic acid, jasmonic acid, abscisic acid, and proline in the first 27 days post infection. The principal component analysis–linear discriminant analysis were used to distinguish subtle biochemical changes between the three treatments, facilitating the early detection of the pathogen and its monitoring over time.</p>","PeriodicalId":16838,"journal":{"name":"Journal of Plant Diseases and Protection","volume":null,"pages":null},"PeriodicalIF":2.0,"publicationDate":"2024-08-21","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"142207717","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"农林科学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Journal of Plant Diseases and Protection
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1