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Emerging pathogens and disease dynamics threatening avocado production in southern Türkiye 威胁图尔基耶南部牛油果生产的新病原体和病害动态
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-18 DOI: 10.1007/s41348-024-00954-6
Özer Çalış, Sefanur Çelik, Hakan Fidan, Mumin Ibrahim Tek, Mehraj Shah, Ilhami Tozlu, Shabir Hussain Wani

Avocado (Persea americana Milll.) holds a pivotal position in global fruit crops, contributing significantly to the economies of tropical and subtropical regions. However, the rising incidence of diseases poses a substantial risk to avocado production. This comprehensive study investigated the disease landscape in Antalya, the largest avocado cultivation area in the Türkiye. A survey of 2537 avocado trees across 11 regions from 2020 to 2021 revealed alarming disease incidences, particularly in the eastern regions of Gazipasa and Alanya. Dieback, branch canker, anthracnose, and soil-borne root rot were identified as the primary diseases affecting tree canopies, twigs, and branches. Morphological and molecular analyzes unveiled a spectrum of pathogens, with Colletotrichum gloeosporioides dominating in the Mediterranean region. Notably, Phytophthora cinnamomi emerged as a severe threat, causing root rot and decline in avocado trees. Fusarium solani and Fusarium oxysporum, known for their association with tropical fruit crops, were identified in the western parts of Antalya. Additionally, we have detected Neofusicoccum parvum, Lasiodiplodia theobromae, and Neopestalotiopsis rosae in collected samples from avocado trees. The identified pathogens exhibited varying levels of severity in branch canker and anthracnose on avocado branches and leaves. Furthermore, pathogenicity evaluations shed light on the potential of these pathogens to induce severe symptoms, emphasizing the urgency for effective control measures. The exploration of cultural and biological control strategies are crucial for mitigating the impact of branch canker, dieback, and anthracnose diseases, ensuring the sustainability of avocado cultivation in the region.

牛油果(Persea americana Milll.)然而,不断上升的病害发生率给鳄梨生产带来了巨大风险。这项综合研究调查了土耳其最大的牛油果种植区安塔利亚的病害情况。2020 年至 2021 年期间,对 11 个地区的 2537 棵牛油果树进行的调查显示,病害发生率令人担忧,尤其是在东部的加齐帕萨和阿兰亚地区。枯萎病、枝干腐烂病、炭疽病和土传根腐病被确定为影响树冠、树枝和枝干的主要病害。形态学和分子分析揭示了病原体的种类,地中海地区主要是球孢子菌。值得注意的是,Phytophthora cinnamomi 是一个严重的威胁,它导致牛油果树根部腐烂和衰退。在安塔利亚西部地区发现了 Fusarium solani 和 Fusarium oxysporum,它们因与热带水果作物有关而闻名。此外,我们还在采集的牛油果树样本中检测到了副球孢霉(Neofusicoccum parvum)、Lasiodiplodia theobromae 和 Neopestalotiopsis rosae。已确定的病原体在牛油果枝叶上表现出不同程度的腐烂病和炭疽病。此外,致病性评估揭示了这些病原体诱发严重症状的潜力,强调了采取有效控制措施的紧迫性。探索文化和生物防治策略对于减轻枝干腐烂病、枯萎病和炭疽病的影响,确保该地区鳄梨种植的可持续性至关重要。
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引用次数: 0
First report of Hyphodermella rosae as causal agent of white rot of Philodendron inflorescences 首次报告Hyphodermella rosae是Philodendron花序白腐病的病原菌
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-17 DOI: 10.1007/s41348-024-00951-9
Eliana Dell’Olmo, Veronica Senape, Giovanni Ragosta, Loredana Sigillo

In Spring 2022, philodendron plants in South Italy showed rotting and drop of inflorescences. Inspecting the inner part of the inflorescences, abundant white mould was observed. Hyphodermella rosae was isolated from symptomatic tissues and found to be responsible of the disease after Koch’s postulate accomplishment. Morphological and molecular characterization by ITS, RBP and TEF sequencing, as well as further phylogenetic analyses, validated the identification of strain CREA OF 1276 among H. rosae. This work is the first report of H. rosae as causal agent of white rot in philodendron in Italy and worldwide and also represents a new description of pathogenic lifestyle of this corticoid species.

2022 年春,南意大利的凤仙花植株出现腐烂和花序脱落现象。在检查花序内部时,发现了大量白色霉菌。从有症状的组织中分离出 Hyphodermella rosae,根据科赫推断,发现该病是由 Hyphodermella rosae 引起的。通过 ITS、RBP 和 TEF 测序进行的形态学和分子鉴定,以及进一步的系统发育分析,确认了 CREA OF 1276 菌株属于 H. rosae。这是意大利乃至世界范围内首次报道 H. rosae 是荷兰鹅掌楸白腐病的病原菌,同时也是对这种皮质类物种致病生活方式的新描述。
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引用次数: 0
Diagnosis of tomato leaf disease using OTSU multi-threshold image segmentation-based chimp optimization algorithm and LeNet-5 classifier 利用基于 OTSU 多阈值图像分割的黑猩猩优化算法和 LeNet-5 分类器诊断番茄叶病
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-08 DOI: 10.1007/s41348-024-00953-7
Padamata Ramesh Babu, Atluri Srikrishna, Venkateswara Rao Gera

The ability to diagnose crop diseases is crucial which affects the crop yield and agricultural productivity. The primary area of study for crop disease diagnostics now centres on deep learning techniques. However, deep learning techniques require high computational power, which limits their portability. This paper used the variation of convolution neural network model LeNet-5 for classification and the Otsu multi-thresholding method with an optimization algorithm for the segmentation of the images. The classifier is trained using the Plant Village dataset which contains images of tomato leaves with various types of diseases. This method is highlighted for its high accuracy in disease identification. Additionally, to assess its ability to perform well with new, unseen data, real-time diseased images are tested in the proposed method. This can ensure that the method can effectively generalize beyond the initial dataset it was trained on. The performance using the dataset can be calculated using precision, recall, F1-score, and accuracy. These are compared with three existing approaches Xception, ResNet50, and VGG16 from this comparison the proposed approach gives the best accuracy for classification.

作物病害诊断能力至关重要,它会影响作物产量和农业生产率。目前,作物疾病诊断的主要研究领域集中在深度学习技术上。然而,深度学习技术需要较高的计算能力,这限制了其可移植性。本文使用卷积神经网络模型 LeNet-5 的变体进行分类,并使用带有优化算法的大津多重阈值法对图像进行分割。分类器使用植物村数据集进行训练,该数据集包含患有各种疾病的番茄叶片图像。该方法因其在病害识别方面的高准确率而备受瞩目。此外,为了评估该方法在处理新的、未见过的数据时的良好性能,还对所提出的方法中的实时病害图像进行了测试。这可以确保该方法能够有效地超越其训练的初始数据集。使用数据集的性能可以用精确度、召回率、F1-分数和准确度来计算。这些数据与现有的三种方法 Xception、ResNet50 和 VGG16 进行了比较。
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引用次数: 0
Potential host range of Stilbocrea banihashemiana and susceptibility of economically important trees to this emergent fungal canker-causing pathogen Stilbocrea banihashemiana 的潜在寄主范围以及重要经济树木对这种新出现的真菌腐烂病病原体的易感性
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-05 DOI: 10.1007/s41348-024-00930-0
Hamed Negahban, Reza Mostowfizadeh-Ghalamfarsa, Zeinab Bolboli, Maryam Salami, Moslem Jafari

Stilbocrea banihashemiana is a recently described species of ascomycete fungi (Bionectriaceae) that causes canker and dieback diseases on fig and barberry, and dieback on loquat trees. Previous studies suggested this pathogen might affect other trees including economically important fruit crops, such as almonds, apples, and olives. This study assessed the susceptibility of 40 tree species belonging to 20 plant families, including fruit-bearing, ornamental, and edible landscape plants, to S. banihashemiana. The assessment was conducted by wound-inoculating detached shoots and one-year-old saplings with the pathogen. Based on five parameters of induced lesions, we clustered the inoculated tree species using the principal component analysis approach. The results of the approach revealed four distinct groups of tree species based on their susceptibility traits. Almond, apricot, eucalyptus, poplar, and red mulberry clustered in one group as susceptible hosts. The majority of the species examined, which included both tropical and temperate trees, were categorized as moderately susceptible. Platanus and sweet orange were identified as non-host-resistant species, while Arizona cypress, garden privet, and olive were classified as low susceptible. Moreover, our findings suggest a correlation between temperature and the aggressiveness of S. banihashemiana. This study revealed that the emerging pathogen, S. banihashemiana, could have a broader host range than currently recognized. The accidental introduction of this pathogen through the global trade of live host plants may pose a significant threat to economically important trees in temperate and subtropical regions.

Stilbocrea banihashemiana 是一种新近被描述的子囊真菌(Bionectriaceae),可引起无花果和小檗的腐烂病和枯萎病,以及枇杷树的枯萎病。以前的研究表明,这种病原体可能会影响其他树木,包括杏仁、苹果和橄榄等具有重要经济价值的水果作物。本研究评估了隶属于 20 个植物科的 40 种树木对 S. banihashemiana 的易感性,其中包括果树、观赏植物和食用景观植物。评估是通过将病原体伤口接种到分离的嫩枝和一岁的树苗上进行的。根据诱发病变的五个参数,我们使用主成分分析方法对接种的树种进行了聚类。该方法的结果显示,根据树种的易感性特征,我们将其分为四个不同的组别。杏、杏树、桉树、杨树和红桑作为易感寄主被归为一组。所研究的大多数树种(包括热带和温带树种)被归类为中度易感树种。桔梗和甜橙被确定为非抗性寄主树种,而亚利桑那柏树、花园紫薇和橄榄则被归类为低度易感树种。此外,我们的研究结果表明,温度与 S. banihashemiana 的侵袭性之间存在相关性。这项研究表明,新出现的病原体 S. banihashemiana 的寄主范围可能比目前公认的更广。这种病原体通过活寄主植物的全球贸易意外引入,可能会对温带和亚热带地区具有重要经济价值的树木构成重大威胁。
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引用次数: 0
Field effectiveness of some essential oil emulsions against the whitefly Bemisia tabaci (GENN.) that infest potato plants in Egypt 一些精油乳剂对埃及马铃薯植物粉虱(Bemisia tabaci (GENN.))的田间防治效果
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-04 DOI: 10.1007/s41348-024-00944-8
Trandil F. Wahba, Enas Adel Abd-Elatef, Mona N. Wahba

Whitefly, Bemisia tabaci, nymphs and sucking sap adults, is one of the most damaging pests of potato, Solanum tuberosum. Excessive use of pesticides causes environmental pollution and the death of beneficial insects, so it is necessary to search for safer controlling alternatives. An experiment was carried out during seasons 2020–2021 and 2021–2022, under field conditions in Egypt. The objective of this study was to identify the main constituent compounds of peppermint and eucalyptus essential oils prepare coarse emulsion (CE) and nanoemulsion (NE) of both peppermint and eucalyptus essential oils and evaluate their efficiency against the whitefly, B. tabaci, in potato cultivars and the effect of these emulsions on the chemical components of potato leaves. The results revealed that the toxicity of the emulsions decreased with increasing time after spraying. The second spray which took place at a 10-day interval was more effective than the first spray. During the season of 2021, three days following the second spray, the tested emulsions' toxicity was highly effective. The reduction percentages of nymph for peppermint coarse emulsion (PCE), peppermint nanoemulsion (PNE), eucalyptus coarse emulsion (ECE), eucalyptus nanoemulsion (ENE) and imidacloprid were 82.64, 84.14, 73.26, 72.72 and 89.03, but they were 78.58, 83.27, 77.85, 69.97 and 89.26 compared with 2022. A moderately positive correlation was identified between temperature, specific humidity, wind speed and the effectiveness of the emulsions. This indicates that higher levels of temperature, humidity and wind speed were associated with increased efficacy of the emulsions. The study of the phytochemicals (total soluble protein, total carbohydrate, total phenolic contents and peroxidase activity). PCE and ECE achieved a slight decrease in protein levels. Also, ECE increased total plant carbohydrates. All treatments did not affect the phenolic compounds of potato leaf plants except ENE, which caused an increase in phenolic compounds. All treatments decreased the nitrogen plants' contents, while PCE, PNE, and ENE increased the potassium content. All treatments increase the activity of peroxidase (POX) compared with untreated plants. The formulations PNE and ENE might be an interesting alternative for integrated pest management of B. tabaci nymphs.

烟粉虱(Bemisia tabaci)若虫和吸汁成虫是马铃薯(Solanum tuberosum)上危害最严重的害虫之一。过量使用杀虫剂会造成环境污染和益虫死亡,因此有必要寻找更安全的杀虫替代品。2020-2021 年和 2021-2022 年两季,在埃及的田间条件下进行了一项实验。这项研究的目的是确定薄荷精油和桉树精油的主要成分化合物,制备薄荷精油和桉树精油的粗乳剂(CE)和纳米乳剂(NE),并评估它们对马铃薯栽培品种中的粉虱 B. tabaci 的防治效果,以及这些乳剂对马铃薯叶片化学成分的影响。结果表明,随着喷洒时间的延长,乳剂的毒性降低。间隔 10 天进行的第二次喷洒比第一次喷洒更有效。在 2021 年的季节里,第二次喷洒后三天,测试乳剂的毒性非常有效。与 2022 年相比,薄荷粗乳剂(PCE)、薄荷纳米乳剂(PNE)、桉树粗乳剂(ECE)、桉树纳米乳剂(ENE)和吡虫啉的若虫减少率分别为 82.64、84.14、73.26、72.72 和 89.03,但它们的若虫减少率分别为 78.58、83.27、77.85、69.97 和 89.26。温度、特定湿度、风速与乳剂效果之间存在中度正相关。这表明,温度、湿度和风速越高,乳剂的功效越高。植物化学物质研究(总可溶性蛋白质、总碳水化合物、总酚含量和过氧化物酶活性)。PCE 和 ECE 使蛋白质含量略有下降。此外,ECE 增加了植物碳水化合物总量。所有处理都不影响马铃薯叶片植株的酚类化合物,只有 ENE 导致酚类化合物增加。所有处理都降低了植物的氮含量,而 PCE、PNE 和 ENE 增加了钾含量。与未处理的植物相比,所有处理都能提高过氧化物酶(POX)的活性。制剂 PNE 和 ENE 可能会成为一种有趣的替代品,用于对塔巴氏菌若虫进行虫害综合防治。
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引用次数: 0
Biochemical dynamics during development of insect-induced plant galls: a review 昆虫诱导的植物虫瘿发育过程中的生化动态:综述
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-06-01 DOI: 10.1007/s41348-024-00931-z
Preeti Mishra, Parmila Saini, Vidya Patni

Insect-induced galls are regulated outgrowths of plant tissues that result from unique and mutual interactions between host plants and gall-inducing insects. The insects, mainly belonging to the orders Hemiptera, Hymenoptera, Thysanoptera, and Diptera, induce gall formation through activities such as oviposition, feeding, secretions, and chewing. These activities trigger morphogenetic and physiological factors, leading to the development of distinct forms of galls. It is noteworthy that about 90% of gall-inducing insects exhibit host specificity. This review investigates the biochemical and metabolic changes that occur when plants and insects interact. These insects use enzymes such as polygalacturonase, pectinesterase, cellulase, and proteinase present in their saliva to assist in breaking down the plant's cuticle and cell wall during the infestation. This process disrupts the subcellular environment, resulting in a chemical shock at the infestation sites. Stressful conditions stimulate the generation of action potential in plants, activating channels and causing faster depolarization of the plasma membrane. Additionally, under stress, plants may generate high levels of reactive oxygen species (ROS), leading to an oxidative burst at sites of infection. ROS triggers necrosis through a hypersensitive response. Gall-inducing insects disrupt the normal metabolism of host plants, resulting in a series of biochemical changes and metabolic imbalances. These changes promote the formation of new plant tissues, which require the production of plant growth hormones and ultimately alter the host plant's phenotype.

昆虫诱导的虫瘿是寄主植物和诱导虫瘿的昆虫之间独特而相互的作用所产生的植物组织的调节性外生组织。昆虫主要属于半翅目、膜翅目、鞘翅目和双翅目,它们通过产卵、取食、分泌物和咀嚼等活动诱导虫瘿形成。这些活动会引发形态发生和生理因素,从而形成不同形式的虫瘿。值得注意的是,约 90% 的虫瘿诱导昆虫具有寄主特异性。本综述研究植物与昆虫相互作用时发生的生化和代谢变化。这些昆虫利用唾液中的聚半乳糖醛酸酶、果胶酶、纤维素酶和蛋白酶等酶类,在侵染过程中协助分解植物的角质层和细胞壁。这一过程会破坏亚细胞环境,导致侵染部位受到化学冲击。应激条件会刺激植物产生动作电位,激活通道并导致质膜加速去极化。此外,在应激状态下,植物可能会产生大量活性氧(ROS),导致侵染部位发生氧化猝灭。ROS 通过超敏反应引发坏死。诱瘿昆虫会破坏寄主植物的正常新陈代谢,导致一系列生化变化和新陈代谢失衡。这些变化会促进新植物组织的形成,从而需要产生植物生长素,并最终改变寄主植物的表型。
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引用次数: 0
Symptoms and disease virulence assessment in commercial pepper cultivars caused by Pepper chat fruit viroid 由辣椒聊果病毒引起的商业辣椒栽培品种的症状和致病力评估
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-05-29 DOI: 10.1007/s41348-024-00943-9
Thitichat Keyata, Samabhorn Sinhabandhu, Kanungnit Reanwarakorn

The symptoms caused by viroids differ, ranging from asymptomatic to mild-or-severe symptoms. Pepper plant symptoms caused by the Pepper chat fruit viroid (PCFVd) are mild compared to those affecting tomato plants; however, there is not much more known of the symptomatology on pepper plants. Symptoms that could be used for disease virulence assessment in pepper plants were elucidated from 31 commercial pepper cultivars belonging to Capsicum annuum and C. frutescens that had been purchased from agricultural shops. The plants were mechanically sap-inoculated at the seedling growth stage and observed weekly for symptom development, with disease virulence evaluations performed at 4, 8, and 12 weeks post inoculation. Infection of all plants was verified based on reverse transcription-polymerase chain reaction, along with visual evidence of growth reduction, including leaf rugosity and leaf size reduction, a narrow canopy of the blocky and elongated fruit shapes for C. annuum and explicit apical stunting with small apical leaves of the elongated fruit type for C. frutescens. The disease virulence assessment was designed based on these symptoms to produce a score with 0–10 disease virulence levels (DVLs). The results showed that the pepper cultivars displayed responses to PCFVd with DVL scores of 1.00–8.00, with no PCFVd transmission being recorded from seeds to seedlings for the 3 test cultivars. This finding indicated that the genetic resources of pepper cultivars against PCFVd were as low as 1.00 DVL. However, the low DVL pepper cultivars could provide an inoculum source to other susceptible plants via mechanical transmission.

病毒引起的症状各不相同,从无症状到症状轻微或严重不等。与影响番茄植株的症状相比,辣椒聊果病毒病(PCFVd)引起的辣椒植株症状较轻;然而,人们对辣椒植株的症状了解不多。我们从农资店购买了 31 个属于辣椒属(Capsicum annuum)和辣椒属(C. frutescens)的商品辣椒栽培品种,从中找出了可用于辣椒植株病害毒性评估的症状。植株在幼苗生长阶段进行机械汁液接种,每周观察症状发展情况,并在接种后 4、8 和 12 周进行病害毒性评估。根据反转录聚合酶链式反应以及生长减弱的直观证据,包括叶片皱缩和叶片大小减小、C. annuum 的块状和拉长果实形状的狭窄冠层,以及 C. frutescens 的明显顶端发育不良和拉长果实类型的小顶端叶片,对所有植株的感染情况进行了验证。根据这些症状设计了病害毒力评估,得出 0-10 个病害毒力等级(DVL)。结果表明,辣椒栽培品种对 PCFVd 的反应为 DVL 分数 1.00-8.00,3 个试验栽培品种的种子到幼苗之间没有 PCFVd 传播记录。这一结果表明,辣椒栽培品种对 PCFVd 的遗传资源的 DVL 值低至 1.00。然而,低 DVL 的辣椒栽培品种可通过机械传播为其他易感植物提供接种源。
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引用次数: 0
The use of long-read PCR amplicon sequencing to study the evolution of resistance to zoxamide, oxathiapiprolin and complex III inhibitors in French Plasmopara viticola field populations 利用长线程 PCR 扩增子测序技术研究法国葡萄原疟原虫田间种群对唑虫酰胺、氧硫磷和复合体 III 抑制剂的抗药性演变情况
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-05-29 DOI: 10.1007/s41348-024-00939-5
S. Cherrad, B. Gillet, J. Dellinger, L. Bellaton, P. Roux, C. Hernandez, H. Steva, L. Perrier, S. Vacher, S. Hughes

Molecular methods are one of the most effective tools to monitor fungicide resistance. Long-read sequencing is an emerging technology in the field of plant pathology. We developed a PCR-based Oxford Nanopore Technologies amplicon sequencing method allowing the simultaneous detection and quantification of Plasmopara viticola variants conferring fungicide resistance to complex III inhibitors, zoxamide and oxathiapiprolin in the same vineyard population. Analysis of cyt b gene variants in natural P. viticola populations showed that almost all samples (23 out of 24 populations) collected in France contain variants G143A, S34L and/or E203-DE-V204 insertion. In the analysed populations, only cyt b reads with both substitutions S34L and G134A were detected at significant levels, suggesting the selection of resistant strains to both QoI fungicides and ametoctradin. French P. viticola population P36 with low sensitivity to oxathiapiprolin did not contain oxysterol binding protein sequences with both variants G770V and N837I, suggesting the presence of two different genotypes of P. viticola strain in this population. Zoxamide insensitivity associated with β-tubulin variants carrying the C239S substitution was detected in Italian vineyard populations but not in France.

分子方法是监测杀菌剂抗药性的最有效工具之一。长读测序是植物病理学领域的一项新兴技术。我们开发了一种基于 PCR 技术的牛津纳米孔技术(Oxford Nanopore Technologies)扩增子测序方法,可同时检测和量化同一葡萄园种群中对复合体 III 抑制剂、唑虫酰胺和氧硫吡咯林具有杀菌剂抗性的葡萄疫霉(Plasmopara viticola)变体。对葡萄孢菌天然种群中细胞 b 基因变体的分析表明,在法国采集的几乎所有样本(24 个种群中的 23 个)都含有 G143A、S34L 和/或 E203-DE-V204 插入变体。在所分析的种群中,只有同时含有 S34L 和 G134A 的细胞 b 读数被检测到,且含量较高,这表明对 QoI 杀菌剂和阿米曲丁都有抗性的菌株被选育出来。对噁硫唑嘌呤敏感性低的法国葡萄孢群体 P36 不包含 G770V 和 N837I 两个变体的氧杂环醇结合蛋白序列,这表明该群体中存在两种不同基因型的葡萄孢菌株。在意大利的葡萄园种群中检测到与携带 C239S 取代的 β-管蛋白变体相关的对唑菌酰胺不敏感性,但在法国没有检测到。
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引用次数: 0
The nearly complete genome sequence of clade B, wheat streak mosaic virus isolate from Türkiye 图尔基耶小麦条纹花叶病毒分离物 B 支系几乎完整的基因组序列
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-05-29 DOI: 10.1007/s41348-024-00942-w
Havva Ilbağı, Rick Masonbrink, Wyatt Allen Miller

Wheat streak mosaic virus is one of the most widespread viruses in cereal crops, causing severe losses and dramatically affecting worldwide wheat production. Currently, four distinct clades of WSMV have been grouped and named: A (Mexico), B (Europe, Asia, Russia, the USA), C (Iran), and D (The USA, Argentina, Brazil, Australia, Canada, Türkiye). In this study, we determined the nearly complete and partial nucleotide sequences of WSMV type B isolates collected from wheat found in the European part of Türkiye using high throughput sequencing. Excluding the poly(A) tail, the genome of isolate S34Edirne (GenBank acc.no. MZ405098) consisted of 9360 nucleotides and contained a single large open reading frame encoding a polyprotein of 3033 amino acids. The partial sequence of WSMV in wheat isolate (GenBank acc.no. ON364116) is 3348 nt long. The characteristic lack of a GGA (Gly2761) codon within coat protein (CP) of the polyprotein of S34Edirne complete nucleotide sequence is typical for the clade B, WSMV-ΔE isolates, which are widely found throughout the European continent. Sequence comparisons revealed that WSMV Turkish wheat isolate is the most closely related to Czech isolate, with highly similar nucleotide and amino acid identities at 98.83 and 99.13%, respectively. The result of this study indicates that the nearly complete and partial genome sequences of S34Edirne and S34_Edirne24 isolates should be placed into clade B of the European WSMV-ΔE isolates.

小麦条纹花叶病毒是谷类作物中最广泛传播的病毒之一,会造成严重损失,并对全球小麦生产产生巨大影响。目前,已将小麦条纹花叶病毒分成四个不同的支系并将其命名:A(墨西哥)、B(欧洲、亚洲、俄罗斯、美国)、C(伊朗)和 D(美国、阿根廷、巴西、澳大利亚、加拿大、土耳其)。在本研究中,我们利用高通量测序技术测定了从土耳其欧洲地区小麦中收集的 B 型 WSMV 分离物的近乎完整的部分核苷酸序列。除去多聚(A)尾,分离株 S34Edirne(GenBank acc.no. MZ405098)的基因组由 9360 个核苷酸组成,包含一个大的开放阅读框,编码 3033 个氨基酸的多聚蛋白。小麦分离物中的 WSMV 部分序列(GenBank acc.no. ON364116)长 3348 nt。S34Edirne 完整核苷酸序列的多聚蛋白的衣壳蛋白(CP)中缺少 GGA(Gly2761)密码子,这是 B 支 WSMV-ΔE 分离物的典型特征,这些分离物广泛分布于欧洲大陆。序列比较显示,土耳其小麦 WSMV 分离物与捷克分离物的亲缘关系最密切,核苷酸和氨基酸的相似度分别为 98.83% 和 99.13%。该研究结果表明,S34Edirne 和 S34_Edirne24 分离物的几乎完整和部分基因组序列应归入欧洲 WSMV-ΔE 分离物的 B 支系。
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引用次数: 0
Comparison of two different experimental environments for resistance screenings for the leafhopper-transmitted wheat dwarf virus in wheat 比较两种不同实验环境对小麦叶蝉传播的小麦矮小病毒的抗性筛选
IF 2 4区 农林科学 Q2 AGRICULTURE, MULTIDISCIPLINARY Pub Date : 2024-05-29 DOI: 10.1007/s41348-024-00929-7
Anne-Kathrin Pfrieme, Andreas Stahl, Klaus Pillen, Torsten Will

Wheat dwarf virus (WDV) causes high yield losses in wheat and other cereals and is therefore an important pathogen transmitted by the leafhopper Psammotettix alienus. Climate change will increase infections by insect-transmitted viruses due to the increasing spread of vectors. In the context of integrated pest management, the cultivation of WDV-resistant/tolerant varieties is an effective way of controlling WDV. Evaluation of tolerant/resistant genotypes is based on inoculation with viruliferous leafhoppers and subsequent phenotyping in gauze houses under semi-field conditions. For successful screening, it is important to ensure the uniform and reproducible inoculation of plants. Abiotic conditions, particularly temperature, have a critical influence on inoculation success, and thus, variations in infection rates were observed within and between previous replicates in the field. Furthermore, the leafhopper population reared in the greenhouse has to be reestablished after each infection, which delays the screening process. We addressed these issues by developing an improved inoculation assay in which plants are inoculated in small infection hoods in the greenhouse before being planted out in gauze houses. This procedure allows optimal environmental conditions for WDV infection of test plants and allows the plants with WDV infection to develop under natural environmental conditions for symptom scoring. In addition, the viruliferous leafhoppers were recollected from the test plants after infection, allowing a sustainable use of the insects. The method thus enables more reliable phenotyping by increasing infection success and testing a greater number of genotypes in a shorter time.

小麦矮缩病毒(WDV)会造成小麦和其他谷物的高产损失,因此是由叶蝉 Psammotettix alienus 传播的重要病原体。由于传播媒介的日益扩散,气候变化将增加昆虫传播病毒的感染。在病虫害综合防治方面,种植抗/耐 WDV 品种是控制 WDV 的有效方法。耐受/抗性基因型的评估是基于对带毒叶蝉的接种以及随后在半田间条件下的纱房中进行表型分析。要想成功筛选,必须确保植物接种的一致性和可重复性。非生物条件,尤其是温度,对接种成功与否有着至关重要的影响,因此,在田间的前几个重复中和重复之间都观察到了感染率的变化。此外,在温室中饲养的叶蝉种群在每次感染后都必须重新建立,这就延误了筛选过程。为了解决这些问题,我们开发了一种改进的接种试验,即先将植物接种到温室中的小型感染罩中,然后再种到纱布房中。这一程序为测试植物感染 WDV 提供了最佳环境条件,并使感染 WDV 的植物在自然环境条件下生长,以便进行症状评分。此外,感染后的带毒叶蝉可从试验植物上回收,从而实现昆虫的可持续利用。因此,该方法能提高感染成功率,在更短时间内测试更多基因型,从而实现更可靠的表型分析。
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引用次数: 0
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Journal of Plant Diseases and Protection
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