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Transcriptome Analysis Revealed that Oxalic Acid in Exogenous Licorice Root Exudates Can Stimulate the Phenylpropane Metabolic Pathway 转录组分析揭示外源甘草根渗出物中的草酸可刺激苯丙氨酸代谢途径
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-27 DOI: 10.1007/s00344-024-11385-w
Qiaoli Ma, Xinghua Liang

Licorice roots can release low-molecular-weight oxalic acid (OA). However, the allelopathic effects of OA on licorice are unknown. This study presents an investigation of the effects of exogenous OA treatment on licorice roots through transcriptomic and physiological analyses. Transcriptomic analysis demonstrated that following OA treatment, differentially expressed genes (DEGs) were primarily involved in the phenylpropanoid metabolism pathway. At 6 h, the expression levels of genes associated with this pathway, such as PAL, CHS, POD, cellulase, CPY, MYB, and bHLH, were upregulated. The metabolism of related metabolites, such as flavonoids and lignin, also increased. These findings suggest that the phenylpropanoid metabolism pathway may play a significant role in the response to OA treatment. In addition, the activities of GST, CAT, and POD markedly increased, whereas the content of H2O2 gradually decreased, indicating that OA can activate the antioxidant protective capabilities of licorice roots. These findings suggest that OA may enhance the antioxidant defense of licorice root, as well as the effectiveness of its flavonoid constituents (to a certain degree). Our findings provide valuable theoretical insight into the allelopathic effects of licorice roots.

甘草根能释放低分子量草酸(OA)。然而,OA 对甘草的等位病理效应尚不清楚。本研究通过转录组学和生理学分析,研究了外源 OA 处理对甘草根的影响。转录组分析表明,OA 处理后,差异表达基因(DEGs)主要涉及苯丙类代谢途径。在 6 小时内,与该途径相关的基因,如 PAL、CHS、POD、纤维素酶、CPY、MYB 和 bHLH 的表达水平上调。黄酮类化合物和木质素等相关代谢物的代谢也有所增加。这些研究结果表明,苯丙类代谢途径可能在OA治疗反应中发挥了重要作用。此外,GST、CAT 和 POD 的活性明显提高,而 H2O2 的含量则逐渐降低,这表明 OA 可以激活甘草根的抗氧化保护能力。这些研究结果表明,OA 可增强甘草根的抗氧化防御能力,并在一定程度上增强其黄酮类成分的功效。我们的研究结果为了解甘草根的等位效应提供了宝贵的理论依据。
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引用次数: 0
Combined Application of 2,4-Epibrassinolide and K2SO4 Improved the Cadmium Tolerance in Tobaccos by Protecting Chloroplast and Reducing Cd Accumulation 2,4-表紫苏内酯和 K2SO4 的联合应用通过保护叶绿体和减少镉积累提高烟草对镉的耐受性
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-24 DOI: 10.1007/s00344-024-11427-3
Yalin Yang, Lijun Qin, Piao Wu, Xiangnan Qin, Yaxuan Xiang, Xian Gong

Potassium sulfate (K2SO4) or 2,4-Epibrassinolide (EBL) mediated response to cadmium (Cd) stress in plants has been widely reported, but the joint effect both on plants in response to Cd stress remains obscure. Herein, our results showed the combined application of K2SO4 (10 mM) and EBL (0.2 μM) on tobacco plants under Cd stress (CdCl2, 100 μM) relieved Cd toxicity by improving the activities of AOEs and reducing the contents of decreasing superoxide (H2O2 and O2) and cadmium ion. As a result, the synergetic application of K2SO4 and EBL protected the integrity of chloroplast, which ensured a normal process of photosynthesis without a significant decrease in photosynthetic pigment content. Additionally, the combined application of K2SO4 and EBL also inhibited the expression of the Cd transport-related gene NtNramp1 and enhanced the Cd efflux-related gene NtHMA2. Moreover, the combined treatment of EBL associated with K2SO4 also effectively reduced the Cd accumulation in tobacco leaves under Cd stress compared with the groups treated separately, which implied a potentially synergistic role of EBL and K2SO4 in alleviating Cd toxicity in tobacco plants. This study provides a theoretical reference for the further analysis of the molecular mechanism of K2SO4 and EBL in jointly mediating the response to heavy metals in plants.

硫酸钾(K2SO4)或2,4-表紫草素内酯(EBL)介导的植物对镉(Cd)胁迫的响应已被广泛报道,但二者对植物响应镉胁迫的联合效应仍不清楚。在此,我们的研究结果表明,K2SO4(10 mM)和 EBL(0.2 μM)联合应用于镉胁迫(CdCl2,100 μM)下的烟草植株,通过提高 AOEs 的活性、降低超氧化物(H2O2 和 O2-)和镉离子的含量,缓解了镉的毒性。因此,K2SO4 和 EBL 的协同作用保护了叶绿体的完整性,从而确保了光合作用的正常进行,且光合色素含量没有显著下降。此外,联合施用 K2SO4 和 EBL 还抑制了镉转运相关基因 NtNramp1 的表达,增强了镉外排相关基因 NtHMA2 的表达。此外,与单独处理组相比,EBL与K2SO4联合处理还能有效降低镉胁迫下烟草叶片的镉积累,这意味着EBL和K2SO4在缓解烟草植物镉毒性方面可能具有协同作用。该研究为进一步分析 K2SO4 和 EBL 共同介导植物对重金属反应的分子机制提供了理论参考。
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引用次数: 0
Auxin Receptor TRANSPORT INHIBITOR RESPONSE1 Promotes Tulip Plant Growth and Bulb Swelling 叶黄素受体转运抑制应答1促进郁金香植物生长和鳞茎膨大
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-24 DOI: 10.1007/s00344-024-11426-4
Qi Sun, Bei Zhang, Lin Xiang, Yanping Wang, Zhulong Chan

Tulips are mainly asexually propagated by bulbs that are modified underground stems. Hormones, including auxin, play pivotal roles during plant development. In this study, we investigated the roles of the auxin receptor TRANSPORT INHIBITOR RESPONSE1 (TgTIR1) in tulip bulb growth. TgTIR1 promoter activity analysis showed that it is most abundant in fast growing tissues including hypocotyl, cotyledons, and lateral root in Arabidopsis. Expression of TgTIR1 in Arabidopsis activated lateral organ boundary domain (LBD) transcription factors to promote the outgrowth of axillary branches and lateral roots. TgTIR1 transgenic plants also exhibited increased primary root length, plant height and leaf width. Moreover, downregulation of endogenous TgTIR1 through virus-induced gene silencing (VIGS) inhibited the growth of tulip plants and daughter bulbs. Exogenous auxin promoted while the auxin transport inhibitor 1-N-naphthylphthalamic acid (NPA) repressed tulip daughter bulb growth. This study offered evidence that the auxin pathway was involved in lateral root initiation and tulip bulb growth.

郁金香主要通过球茎进行无性繁殖,而球茎是经过改造的地下茎。在植物发育过程中,包括辅酶在内的激素起着关键作用。在这项研究中,我们调查了辅助素受体TRANSPORT INHIBITOR RESPONSE1(TgTIR1)在郁金香球茎生长中的作用。TgTIR1启动子活性分析表明,它在拟南芥的下胚轴、子叶和侧根等快速生长组织中含量最高。在拟南芥中表达 TgTIR1 能激活侧器官边界域(LBD)转录因子,促进腋枝和侧根的生长。TgTIR1 转基因植株的主根长度、株高和叶宽也有所增加。此外,通过病毒诱导基因沉默(VIGS)下调内源 TgTIR1 会抑制郁金香植株和子鳞茎的生长。外源辅助素促进郁金香子球茎的生长,而辅助素转运抑制剂 1-N-萘酞氨基甲酸(NPA)则抑制郁金香子球茎的生长。这项研究提供了证据,证明辅酶途径参与了侧根的萌发和郁金香球茎的生长。
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引用次数: 0
Molecular Evidence of Crosstalk Between Bacterial Endophytes and Plant Transcriptome in Brassica juncea 甘蓝内生细菌与植物转录组之间相互影响的分子证据
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-24 DOI: 10.1007/s00344-024-11406-8
Garima Sharma, Pooja Gokhale Sinha, Vartika Mathur

The beneficial effects of endophytes on plant growth, development and yield are well known. Modulating plant growth-promoting substances and ameliorating biotic and abiotic stresses are some of the key mechanisms that are deployed by endophytes to facilitate host growth and defence. However, the understanding of the plant’s genome response to their presence is still limited. Therefore, this study provides an insight into the microbiome of B. juncea seeds as well as leaves, and its impact on plant growth and development. It also correlates their presence with the changes in plant. Removal of seed-borne culturable endophytes resulted in trade-off of accelerated growth with decreased biomass. 16S metagenomics revealed that bacterial endophyte diversity and density varied with stage of the plant. We found that 22 endophytic genera including Enterococcus, Halobacteroides, Planktothrix and Streptomyces were observed irrespective of Bavistin treatment and age of the plant. Removal of culturable endophytes also led to downregulation of crucial genes involved in growth, photosynthesis (Photosystem I assembly protein, Photosystem II reaction center protein and Rubisco), transport (nitrate transporter; NRT) and regulation of plant hormones (auxin homeostasis and signalling; CYP83A1) in B. juncea. To the best of our knowledge, this is the first report of the response of plant’ transcriptome to changes in endophyte composition indicating a strong possibility of host gene regulation by the endophytic partner. The exact mechanism of the same needs to be further explored.

内生菌对植物生长、发育和产量的有益影响众所周知。调节植物生长促进物质、改善生物和非生物胁迫是内生菌促进宿主生长和防御的一些关键机制。然而,人们对植物基因组对内生菌存在的反应的了解仍然有限。因此,本研究深入探讨了君子兰种子和叶片的微生物组及其对植物生长和发育的影响。研究还将它们的存在与植物的变化联系起来。去除种子中可培养的内生菌会导致加速生长与生物量下降的权衡。16S 元基因组学显示,细菌内生菌的多样性和密度随植物的生长阶段而变化。我们发现,无论巴维司汀的处理方法和植物的年龄如何,都能观察到 22 个内生菌属,包括肠球菌属(Enterococcus)、哈洛巴氏杆菌属(Halobacteroides)、扁虱属(Planktothrix)和链霉菌属(Streptomyces)。清除可培养的内生菌还会导致君子兰中参与生长、光合作用(光系统 I 组装蛋白、光系统 II 反应中心蛋白和 Rubisco)、运输(硝酸盐转运体;NRT)和植物激素调控(辅助素平衡和信号传导;CYP83A1)的关键基因下调。据我们所知,这是首次报道植物转录组对内生菌成分变化的反应,表明宿主基因很有可能受到内生菌伙伴的调控。其确切机制还有待进一步探讨。
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引用次数: 0
Physiological and Genomic Elucidation of Cold-Resilient Rhizobacteria Reveals Plant Growth Promotion by Siderophore Optimization and Enhanced Biocontrol Potential Against Fungal Pathogens 耐寒根瘤菌的生理学和基因组阐明揭示了苷酸优化对植物生长的促进作用以及针对真菌病原体的更强生物控制潜力
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-24 DOI: 10.1007/s00344-024-11430-8
Pallavi Sharma, Girija Kaushal, Shruti Sinai Borker, Ayush Lepcha, Anil Kumar, Rakshak Kumar

Cold stress and fungal pathogens pose significant challenge to high-altitude agriculture, impeding plant growth and metabolism. Siderophore-producing plant growth-promoting (PGP) rhizobacteria offer a promising solution by enhancing iron uptake and engaging in pathogen biocontrol. The current research aims to investigate the potential of siderophore-producing psychrotrophic bacteria to manage fungal phytopathogens effectively for its possible application as a bio-inoculant. In our search for psychrotrophic PGP bacteria with biocontrol potential, we isolated 13 rhizobacterial morphotypes; among these, AMR01 showed excellent biofertilizer characteristics. Taxonomic analysis elucidated AMR01 as a potentially novel Pseudomonas species. At 10 °C, AMR01 produced 33.23% siderophore unit (PSU), increasing to 55.76 PSU through pH, NH4NO3, and iron concentration optimization. Furthermore, AMR01 exhibited other PGP attributes, including auxin and ammonia production (13.47 µg/ml and 25.08 mg/l), phosphate solubilization (295.1 µg/ml), nitrogen fixation, potassium solubilization, and hydrogen cyanide (HCN) production. Remarkably, AMR01 demonstrated biocontrol potential, inhibiting three phytopathogens. Seed bacterization with AMR01 enhanced the germination of fungus-infected seeds, as evidenced by increased root and shoot length, compared to uninoculated control, conferring protection against fungal infestation. Genome analysis identified genes involved in pyoverdine synthesis and PGP traits in AMR01. The biosynthetic gene cluster associated with siderophore, HCN, and NRPS further supported AMR01 as a potent biocontrol agent. This research underscores the capacity of a novel, Pseudomonas sp., to improve plant growth by aiding in nutrient uptake and protecting against phytopathogens. Physiological and genomic evidence supports the potential of AMR01 as a bio-inoculant for addressing fungal-induced diseases in crops grown in the Indian Himalayan region.

冷胁迫和真菌病原体对高海拔农业构成了巨大挑战,阻碍了植物的生长和新陈代谢。产生嗜苷铁元素的植物生长促进(PGP)根瘤菌通过提高铁吸收和参与病原体生物防治,提供了一种前景广阔的解决方案。目前的研究旨在调查产生嗜铁素的精神营养细菌有效控制真菌植物病原体的潜力,以便将其用作生物接种剂。在寻找具有生物防治潜力的精神营养型 PGP 细菌的过程中,我们分离了 13 种根瘤菌形态,其中 AMR01 表现出优异的生物肥料特性。分类分析表明,AMR01 可能是一种新型假单胞菌。在 10 °C 条件下,AMR01 可产生 33.23% 的苷元单位(PSU),通过优化 pH 值、NH4NO3 和铁浓度,PSU 可增至 55.76。此外,AMR01 还表现出其他 PGP 特性,包括产生辅素和氨气(13.47 微克/毫升和 25.08 毫克/升)、溶解磷酸盐(295.1 微克/毫升)、固氮、溶解钾和产生氰化氢(HCN)。值得注意的是,AMR01 具有生物防治潜力,可抑制三种植物病原体。与未接种的对照组相比,用 AMR01 对种子进行细菌培养可提高受真菌感染的种子的萌发率,根和芽的长度也有所增加,从而保护种子免受真菌侵染。基因组分析确定了参与 AMR01 中吡咯烷酮合成和 PGP 性状的基因。与苷元、HCN 和 NRPS 相关的生物合成基因簇进一步证明 AMR01 是一种有效的生物控制剂。这项研究强调了一种新型假单胞菌(Pseudomonas sp.)通过帮助吸收养分和抵御植物病原体来改善植物生长的能力。生理学和基因组学证据支持 AMR01 作为生物接种剂解决印度喜马拉雅地区农作物真菌引起的疾病的潜力。
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引用次数: 0
Regulatory Response of Rice Seedlings to Exogenously Applied Kinetin During Oxidative Stress 氧化应激期间水稻幼苗对外源施用的 Kinetin 的调控反应
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-23 DOI: 10.1007/s00344-024-11425-5
Vimalraj Kantharaj, Nirmal Kumar Ramasamy, Young-Eun Yoon, Keum-Ah Lee, Vikranth Kumar, Hyeonji Choe, Hadjer Chohra, Young-Nam Kim, Yong Bok Lee

Hydroxyurea (HU) is a known suppressor of ribonucleotide reductase enzyme through enhanced hydrogen peroxide (H2O2) production, causing oxidative damage to DNA in plants. Kinetin (KI) has emerged as an important phytohormone in regulating development processes and antioxidant protection effects against environmental stresses. Therefore, this study aimed to investigate the potential and regulating mechanism of KI application on tolerance of Oryza sativa to HU-induced oxidative stress. Three-day-old rice seedlings were grown in 1/2 MS medium for seven days following different treatments: control, HU (1 mM), KI (40 nM), and HU + KI. The results showed that, compared to control, HU treatment significantly reduced the growth (e.g., dry weight and root length: 36% and 48%, respectively) and photosynthetic rate (e.g., Fv/Fm: 31%) and pigments (e.g., chlorophyll and carotenoid: 52% and 67%, respectively), by stimulating oxidative stress (e.g., H2O2) markers and malondialdehyde levels, causing DNA damage and G1/S (growth/synthesis) and G2/M (growth/mitotic) phase arrest on seven-day-old rice seedlings. Meanwhile, the follow-up treatment of KI to the HU stress plants enhanced the growth (14–31%) and photosynthetic (13–29%) parameters by regulating antioxidant enzyme (e.g., catalase, ascorbate peroxidase, peroxidase, and superoxide dismutase) activities as well as abscisic acid, salicylic acid, gibberellic acid, and indole-3-acetic acid hormone contents, coupled with a significant reduction in reactive oxygen species accumulation. Additionally, KI reduced the DNA damage in the plants exposed to HU stress by reducing the relative density of apurinic/apyrimidinic sites, as evidenced by both decrease and increase in transcriptional regulation of genes (e.g., ATM, ATR, PARP, RAD51A2, and RAD51C) involved in DNA damage response and cell cycle progression. Our findings indicate that exogenous application of KI to plants affected by oxidative stress improves the antioxidant defense system and phytohormone homeostasis as well as DNA damage response alleviating G1/S and G2/M arrest, contributing to enhancement of the rice seedling performance.

众所周知,羟基脲(HU)会通过增强过氧化氢(H2O2)的产生来抑制核糖核苷酸还原酶,从而导致植物 DNA 的氧化损伤。动情素(KI)是一种重要的植物激素,可调节植物的生长发育过程,并对环境胁迫具有抗氧化保护作用。因此,本研究旨在探讨施用 KI 对 Oryza sativa 耐受 HU 诱导的氧化胁迫的潜力和调节机制。在 1/2 MS 培养基中培育 3 天大的水稻幼苗 7 天,分别进行不同的处理:对照、HU(1 mM)、KI(40 nM)和 HU + KI。结果表明,与对照组相比,HU 处理显著降低了秧苗的生长(如干重和根长:分别为 36% 和 48%)、光合速率(如 Fv/Fm:31%)和色素(如叶绿素和类胡萝卜素)、通过刺激氧化应激(如 H2O2)标记和丙二醛水平,造成七天龄水稻秧苗 DNA 损伤和 G1/S(生长/合成)和 G2/M(生长/有丝分裂)期停滞,从而降低光合速率(如 Fv/Fm:31%)和色素(如叶绿素和类胡萝卜素:分别为 52% 和 67%)。同时,通过调节抗氧化酶(如过氧化氢酶、抗坏血酸过氧化物酶、过氧化物酶和超氧化物歧化酶)活性以及脱落酸、水杨酸、赤霉素和吲哚-3-乙酸激素含量,以及显著减少活性氧积累,对 HU 胁迫植株进行 KI 后续处理可提高其生长(14-31%)和光合(13-29%)参数。此外,KI 还通过降低嘌呤/近嘧啶位点的相对密度来减少暴露于 HU 胁迫下的植株的 DNA 损伤,这表现在参与 DNA 损伤响应和细胞周期进展的基因(如 ATM、ATR、PARP、RAD51A2 和 RAD51C)转录调控的减少和增加上。我们的研究结果表明,向受氧化胁迫影响的植物外源施用 KI 可改善抗氧化防御系统和植物激素平衡,以及 DNA 损伤响应,缓解 G1/S 和 G2/M 停滞,从而有助于提高水稻秧苗的生长性能。
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引用次数: 0
Comparative Effects of Root and Foliar Leonardite-Suspension Concentrate Application on Plant Growth and Photosynthetic Efficiency of Lettuce Plants (Lactuca sativa L.) 根部和叶面施用莱昂纳多悬浮浓缩物对莴苣(Lactuca sativa L.)植物生长和光合效率的比较效应
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-20 DOI: 10.1007/s00344-024-11424-6
Santiago Atero-Calvo, Francesco Magro, Giacomo Masetti, Eloy Navarro-León, Juan Jose Rios, Begoña Blasco, Juan Manuel Ruiz

Humic substances (HS) have been defined as a potential plant biostimulant to improve crop yield in a sustainable and environmentally friendly way. Leonardite-suspension concentrate (SC) is a type of HS extracted from lignite that is currently employed to enhance various physiological aspects of plants. However, the different effects between both modes of SC application (root and foliar) are poorly understood, especially on photosynthesis performance. Therefore, this study aimed to investigate the influence of a leonardite-SC-based product (BLACKJAK®), on lettuce growth and photosynthesis efficiency, while comparing both methods of application. For this purpose, four root (R): R1 (0.20 mL/L), R2 (0.40 mL/L), R3 (0.60 mL/L), and R4 (0.80 mL/L), and four foliar: F1 (5.00 mL/L), F2 (7.50 mL/L), F3 (10.00 mL/L), and F4 (12.50 mL/L) BLACKJAK® doses were applied to lettuce plants. Related shoot and root growth parameters, photosynthetic efficiency, and sugar and starch content were assessed in lettuce plants. The results showed that BLACKJAK® improved shoot and root biomass, foliar area, and root length, especially at intermediate doses (R2, R3, F2, and F3), with R3 demonstrating the greatest growth increases. Similarly, the main photosynthetic parameters analyzed (net photosynthetic rate and Rubisco carboxylation efficiency), and the soluble sugars and starch content were improved by the same doses, with R3 showing the best photosynthetic performance. Hence, our study suggests that BLACKJAK® improves lettuce yield and photosynthetic efficiency, particularly with radicular application at R3.

腐殖质(HS)被定义为一种潜在的植物生物刺激剂,能以可持续和环保的方式提高作物产量。莱昂纳多悬浮浓缩物(SC)是从褐煤中提取的一种腐殖质,目前被用于提高植物的各种生理机能。然而,人们对悬浮浓缩物的两种施用模式(根部施用和叶面施用)之间的不同影响,尤其是对光合作用性能的影响还知之甚少。因此,本研究旨在比较两种施用方法,研究基于leonardite-SC的产品(BLACKJAK®)对莴苣生长和光合作用效率的影响。为此,使用了四种根部施肥(R):R1(0.20 mL/L)、R2(0.40 mL/L)、R3(0.60 mL/L)和 R4(0.80 mL/L),以及四种叶面施肥:莴苣植株施用的 BLACKJAK® 剂量分别为 F1(5.00 mL/L)、F2(7.50 mL/L)、F3(10.00 mL/L)和 F4(12.50 mL/L)。对莴苣植株的相关芽和根生长参数、光合效率、糖和淀粉含量进行了评估。结果表明,BLACKJAK® 提高了芽和根的生物量、叶面积和根长,尤其是在中间剂量(R2、R3、F2 和 F3)下,其中 R3 的生长增幅最大。同样,在相同剂量下,主要光合参数(净光合速率和 Rubisco 羧化效率)、可溶性糖和淀粉含量也得到了改善,其中 R3 的光合作用表现最好。因此,我们的研究表明,BLACKJAK® 可提高莴苣产量和光合效率,尤其是在 R3 刻度上施用时。
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引用次数: 0
A Tyrosine Kinase-Like Gene BdCTR1 Negatively Regulates Flowering Time in the Model Grass Plant Brachypodium distachyon 酪氨酸激酶样基因 BdCTR1 负向调控模式禾本科植物 Brachypodium distachyon 的开花时间
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-19 DOI: 10.1007/s00344-024-11418-4
Weiming Bai, Jingyu Li, Dongtian Zang, Fanting Sun, Yufei Niu, Pengyue Wang, Wenjia You, Nan Li, Peisen Su

Flowering time is critical for the regional adaptation, yield, and reproduction of crop plants. Tyrosine kinase-like (TKL) genes are protein kinases (PKs) that play important roles in various plant processes. However, the functions of only a few TKLs in controlling flowering time in plants have been characterized. As a genetic model system, Brachypodium distachyon has been widely used in the study of gramineous crop species. Here, we identified and characterized the function of the model plant Brachypodium (poaceae) tyrosine kinase-like kinase BdCTR1 in controlling flowering time. BdCTR1 mutation caused earlier flowering compared with wild-type (WT) plants. Transcriptomic analysis revealed 2261 differentially expressed genes (DEGs) related to the circadian rhythm, phytohormone signaling, and flavonoid biosynthesis pathways in Bdctr1 mutants compared with the wild type (WT). Quantitative reverse transcription–polymerase chain reaction (qRT–PCR) revealed that the expression levels of flowering-related genes, including FT, PPD1, CO, and FUL, and ET-related genes, including ETR, MKK, and ERF, were altered in Bdctr1 mutants compared with those in WT plants. Thus, our results show that BdCTR1 plays a role in controlling flowering time by regulating various signaling pathways and contribute to elucidating the molecular mechanisms of PKs in controlling plant flowering.

开花时间对农作物的区域适应、产量和繁殖至关重要。酪氨酸激酶样(TKL)基因是一种蛋白激酶(PKs),在植物的各种过程中发挥着重要作用。然而,只有少数 TKL 在控制植物开花时间方面的功能得到了表征。作为一个遗传模型系统,禾本科作物的研究中广泛使用了大花蕨类植物(Brachypodium distachyon)。在此,我们鉴定并描述了模式植物禾本科植物酪氨酸激酶样激酶 BdCTR1 在控制开花时间中的功能。与野生型(WT)植物相比,BdCTR1突变会导致开花时间提前。转录组分析发现,与野生型(WT)相比,Bdctr1 突变体中有 2261 个与昼夜节律、植物激素信号转导和类黄酮生物合成途径相关的差异表达基因(DEGs)。定量反转录聚合酶链反应(qRT-PCR)显示,与 WT 植物相比,Bdctr1 突变体中开花相关基因(包括 FT、PPD1、CO 和 FUL)和 ET 相关基因(包括 ETR、MKK 和 ERF)的表达水平发生了变化。因此,我们的研究结果表明,BdCTR1通过调控各种信号通路在控制花期中发挥作用,有助于阐明PKs控制植物开花的分子机制。
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引用次数: 0
Special Fungal Community Structure Formed by Typical Halophytes in the Rhizosphere Soil Under the Synergistic Action of Different Saline and Alkaline Environments 不同盐碱环境协同作用下根瘤土壤中典型卤叶植物形成的特殊真菌群落结构
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-19 DOI: 10.1007/s00344-024-11422-8
Qian Zhou, Jilian Wang, Tian Zhang, Mingyuan Li

To adapt to a habitat, halophytes growing at the same saline–alkali levels develop their unique rhizosphere microbial communities, whereas same plant species growing at different saline–alkali levels have different rhizosphere microbial communities. Therefore, understanding the rhizosphere microbial community structure of halophytes in different saline–alkali soils can help explore the microbial diversity and functional potential of important soil microorganisms. In this study, rhizosphere soils of three typical halophytes, namely, Halocnemum strobilaceum, Phragmites communis, and Halostachys caspica, growing at severe, heavy, and moderate saline–alkali soils, respectively, were collected from southern Xinjiang. The community structure and physicochemical properties of fungal species in the total nine rhizosphere soils were investigated. Furthermore, the differences in the fungal community structure, diversity, and ecological functions were analyzed in terms of the extent of saline–alkali level and host plant specificity. Rhizosphere soils in the nine habitats had different physicochemical properties. In terms of host plant type, rhizosphere fungal species diversity and richness were the highest in P. communis, followed by H. caspica and H. strobilaceum. The fungal community diversity and richness followed the pattern of moderate > severe > heavy in different soil salinity and alkali types. Although the three host plants had similar rhizosphere fungal community structures under moderate and heavy saline–alkali conditions, these varied significantly under extremely severe saline–alkali conditions. In total, 315 species were identified across all samples, and they were affiliated with 12 phyla, 37 classes, 69 orders, 138 families, and 244 genera. The number of jointly owned ASVs was 189. In the nine habitats, Ascomycota and Basidiomycota were the dominant phyla, while Alternaria, Neocamarosporium, Filobasidium, and Acremonium were the common dominant genera. A prediction of fungal community functions revealed pathotroph-saprotroph-symbiotroph and saprotrophs to be dominant. At the same saline–alkali level, the functional clustering distance of fungal communities was closer. Factors such as soil organic matter (SOM), available nitrogen (AN), electronic conductivity (EC), and pH contributed to the distribution of microbial communities. This study revealed both similarities and distinctions in the composition of fungal communities within the rhizosphere soils of the three typical halophytes thriving in various saline–alkali habitats. At moderate and heavy saline–alkali levels, the fungal community structures were markedly influenced by the severity of salinity and alkalinity. In extremely severe saline–alkali soils, the host plant type significantly affected the fungal community structure. Ultimately, these findings lay a theoretical foundation for the improvement of soil a

为了适应生境,生长在同一盐碱地的卤叶植物会形成其独特的根圈微生物群落,而生长在不同盐碱地的同一植物物种则具有不同的根圈微生物群落。因此,了解不同盐碱地中卤叶植物的根瘤微生物群落结构有助于探索重要土壤微生物的多样性和功能潜力。本研究从新疆南部采集了生长在重度、中度和重度盐碱地的三种典型盐碱地植物根瘤菌群落土壤,分别为Halocnemum strobilaceum、Phragmites communis和Halostachys caspica。研究了九种根圈土壤中真菌的群落结构和理化性质。此外,还从盐碱程度和寄主植物特异性的角度分析了真菌群落结构、多样性和生态功能的差异。九个生境的根瘤土壤具有不同的理化性质。从寄主植物类型来看,根瘤菌群落的真菌物种多样性和丰富度以 P. communis 最高,其次是 H. caspica 和 H. strobilaceum。真菌群落多样性和丰富度在不同的土壤盐碱度类型中呈现出中度、重度和重度的模式。虽然在中度和重度盐碱条件下,三种寄主植物的根瘤菌群落结构相似,但在极重度盐碱条件下,这些群落结构却有很大差异。所有样本中共鉴定出 315 个物种,它们分别隶属于 12 个门、37 个类、69 个目、138 个科和 244 个属。共同拥有的 ASV 数量为 189 个。在九个生境中,子囊菌门(Ascomycota)和担子菌门(Basidiomycota)是优势菌门,而交替孢属(Alternaria)、新金孢属(Neocamarosporium)、丝孢属(Filobasidium)和cremonium属(Acremonium)是常见的优势属。对真菌群落功能的预测显示,嗜病菌-嗜副真菌-嗜共生真菌和嗜副真菌占优势。在相同的盐碱度下,真菌群落的功能聚类距离更近。土壤有机质(SOM)、可利用氮(AN)、电子电导率(EC)和 pH 值等因素对微生物群落的分布有一定影响。这项研究揭示了生长在不同盐碱地的三种典型卤叶植物根瘤土壤中真菌群落组成的相似性和差异性。在中度和重度盐碱地中,真菌群落结构明显受到盐度和碱度严重程度的影响。在极度严重的盐碱土壤中,寄主植物类型对真菌群落结构有显著影响。这些发现最终为改善盐碱地土壤和提高作物产量奠定了理论基础。
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引用次数: 0
Specialization of the Stems into Shoots, Stolons, and Rhizomes in Bermudagrass (Cynodon dactylon L.): Insights from Combined Metabolome and Transcriptome Analyses 百慕大草(Cynodon dactylon L.)的茎特化为芽、匍匐茎和根茎:代谢组和转录组联合分析的启示
IF 4.8 3区 生物学 Q1 PLANT SCIENCES Pub Date : 2024-07-18 DOI: 10.1007/s00344-024-11420-w
Ziyan Ma, Shuai Yuan, Jingbo Chen, Bing Zhang

As a perennial warm-season turfgrass species with great economic value, bermudagrass (Cynodon dactylon L.) simultaneously has three types of stems: shoot, stolon, and rhizome. However, molecular mechanisms underlying the specialization of the three types of stems remain poorly understood. In this study, the metabolome differences among the three types of stems were analyzed and compared through untargeted metabolomic profiling in combination with transcriptome-wide analyses of the genes participating in the metabolic pathways. A total of 949 metabolites were identified in the three stems, whereas 303, 473, and 330 metabolites were differentially accumulated between shoots and stolons, shoots and rhizomes, and stolons and rhizomes, respectively. Sugars and phenylpropanoids were two enriched categories of metabolites showing preferential accumulation in the three types of stems. Transcriptome and RT-qPCR analyses indicated that gene expression of key enzymes catalyzing the synthesis and transformation of sugars and phenylpropanoids, especially glucose-1-phosphate adenylyltransferase, starch synthase, and phenylalanine ammonia-lyase, were delicately regulated to maintain the sugar-starch and lignin-flavonoid homeostasis in the three stems. The results of this study not only expanded our understanding of metabolism regulation in bermudagrass, but also laid a foundation for molecular mechanism study of stem specialization in this glamorous plant species.

百慕大草(Cynodon dactylon L.)是一种具有重要经济价值的多年生暖季型草坪草物种,同时具有三种茎:嫩枝、匍匐茎和根茎。然而,人们对这三种茎特化的分子机制仍然知之甚少。本研究通过非靶向代谢组图谱分析,结合参与代谢途径的全转录组基因分析,对三种茎的代谢组差异进行了分析和比较。在三种茎中共鉴定出949种代谢物,而在嫩枝与匍匐茎、嫩枝与根茎以及匍匐茎与根茎之间分别有303种、473种和330种代谢物的积累存在差异。糖类和苯丙酮类是三类茎中优先积累的两类代谢物。转录组和 RT-qPCR 分析表明,催化糖类和苯丙类化合物合成和转化的关键酶,特别是 1-磷酸葡萄糖腺苷基转移酶、淀粉合成酶和苯丙氨酸氨化酶的基因表达受到微妙调控,以维持三种茎中糖-淀粉和木质素-类黄酮的平衡。该研究结果不仅拓展了我们对百慕大草代谢调控的认识,还为这一魅力植物物种茎特化的分子机制研究奠定了基础。
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引用次数: 0
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Journal of Plant Growth Regulation
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