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Genomics of human NAFLD: Lack of data reproducibility and high interpatient variability in drug target expression as major causes of drug failures. 人类非酒精性脂肪肝的基因组学研究:数据缺乏可重复性和患者间药物靶点表达的高度差异性是药物治疗失败的主要原因。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-02-15 DOI: 10.1097/HEP.0000000000000780
Shifang Tang, Jürgen Borlak

Background and aims: NAFLD is a major disease burden and a foremost cause of chronic liver disease. Presently, nearly 300 trials evaluate the therapeutic efficacy of > 20 drugs. Remarkably, the majority of drugs fail. To better comprehend drug failures, we investigated the reproducibility of fatty liver genomic data across 418 liver biopsies and evaluated the interpatient variability of 18 drug targets.

Approach and results: Apart from our own data, we retrieved NAFLD biopsy genomic data sets from public repositories and considered patient demographics. We divided the data into test and validation sets, assessed the reproducibility of differentially expressed genes and performed gene enrichment analysis. Patients were stratified by disease activity score, fibrosis grades and sex, and we investigated the regulation of 18 drug targets across 418 NAFLD biopsies of which 278 are NASH cases. We observed poor reproducibility of differentially expressed genes across 9 independent studies. On average, only 4% of differentially expressed genes are commonly regulated based on identical sex and 2% based on identical NAS disease score and fibrosis grade. Furthermore, we observed sex-specific gene regulations, and for females, we noticed induced expression of genes coding for inflammatory response, Ag presentation, and processing. Conversely, extracellular matrix receptor interactions are upregulated in males, and the data agree with clinical findings. Strikingly, and with the exception of stearoyl-CoA desaturase, most drug targets are not regulated in > 80% of patients.

Conclusions: Lack of data reproducibility, high interpatient variability, and the absence of disease-dependent drug target regulations are likely causes of NASH drug failures in clinical trials.

背景目的:非酒精性脂肪肝(NAFLD)是一种主要的疾病负担,也是慢性肝病的首要病因。目前,近 300 项试验对 20 多种药物的疗效进行了评估。值得注意的是,大多数药物都以失败告终。为了更好地理解药物失败的原因,我们调查了418例肝脏活检中脂肪肝基因组数据的可重复性,并评估了18个药物靶点的患者间变异性:除了我们自己的数据外,我们还从公共资料库中检索了非酒精性脂肪肝活检基因组数据集,并考虑了患者的人口统计学特征。我们将数据分为测试集和验证集,评估了差异表达基因(DEG)的重现性,并进行了基因富集分析。我们根据疾病活动评分、纤维化等级和性别对患者进行了分层,并在418份非酒精性脂肪肝活检样本(其中278份为NASH病例)中调查了18个药物靶点的调控情况。我们在 9 项独立研究中观察到 DEGs 的重现性很差。平均而言,只有 4% 的 DEGs 受相同性别的基因调控,2% 的 DEGs 受相同 NAS 疾病评分和纤维化分级的基因调控。此外,我们还观察到性别特异性基因调控,对女性而言,我们注意到炎症反应、抗原递呈和处理基因的诱导表达。相反,男性的 ECM 受体相互作用上调,这些数据与临床发现一致。令人震惊的是,除了硬脂酰-CoA 去饱和酶外,大多数药物靶点在超过 80% 的患者中没有受到调节:结论:缺乏数据可重复性、患者间差异大以及缺乏与疾病相关的药物靶点调节可能是导致 NASH 药物临床试验失败的原因。
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引用次数: 0
Finding the TRAIL to escape granzyme B-mediated liver injury in PSC. 寻找 TRAIL,摆脱颗粒酶 B 介导的 PSC 肝损伤。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-03-19 DOI: 10.1097/HEP.0000000000000859
Maria Eugenia Guicciardi, Nidhi Jalan-Sakrikar
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引用次数: 0
Full adherence to cirrhosis quality indicators is associated with lower mortality in acute variceal bleeding: Nationwide audit. 完全遵守肝硬化质量指标可降低急性静脉曲张出血的死亡率:全国性审计。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-02-20 DOI: 10.1097/HEP.0000000000000793
Yu Jun Wong, Margaret Teng, Alyssa Sim, Htay Myat Thet, Xuhui Teoh, Marianne Anastasia De Roza, Guan Sen Kew, Jia Hong Koh, Pooi Ling Loi, Kai Lim, Garrett Kang, Jonathan Kuang, En Xian Sarah Low, Jing Liang Ho, Liu Yuan Gabriel Cher, Kenny Sze, Guan Wee Wong, Boon Yew Andrew Kwek, Wei Lyn Yang, Juan G Abraldes, Jason Chang

Background and aims: Acute variceal bleeding (AVB) is a major complication in patients with cirrhosis. Using a nationwide AVB audit, we performed a nested cohort study to determine whether full adherence to the AVB quality indicator (QI) improves clinical outcomes in patients with cirrhosis and AVB.

Approach and results: We assessed real-world adherence to AVB QI among patients with cirrhosis admitted for AVB in all public hospitals in Singapore between January 2015 and December 2020. Full adherence was considered when all 5 QIs were fulfilled: prophylactic antibiotics, vasoactive agents, timely endoscopy, endoscopic hemostasis during index endoscopy, and nonselective beta-blockers after AVB. We compare 6-week mortality between the full adherence and suboptimal adherence groups using a propensity-matched cohort.A total of 989 patients with AVB were included. Full adherence to all AVB QI was suboptimal (56.5%). Analysis of the propensity-matched cohort with comparable baseline characteristics showed that full adherence was associated with a lower risk of early infection (20.0% vs. 26.9%), early rebleeding (5.2% vs. 10.2%), and mortality at 6 weeks (8.2% vs. 19.7%) and 1 year (21.3% vs. 35.4%) ( p <0.05 for all). While full adherence was associated with a lower 6-week mortality regardless of the MELD score, nonadherence was associated with a higher 6-week mortality despite a lower predicted risk of 6-week mortality. Despite high adherence to the recommended process measures, patients with CTP-C remain at a higher risk of rebleeding, 6-week and 1-year mortality.

Conclusions: Full adherence to the AVB QI should be the target for quality improvement in patients with cirrhosis.

简介:急性静脉曲张出血(AVB)是肝硬化患者的主要并发症:急性静脉曲张出血(AVB)是肝硬化患者的主要并发症。我们利用一项全国性的静脉曲张出血审计,开展了一项巢式队列研究,以确定完全遵守静脉曲张出血质量指标(QI)是否能改善肝硬化静脉曲张患者的临床预后:我们评估了 2015 年 1 月至 2020 年 12 月期间在新加坡所有公立医院接受 AVB 治疗的肝硬化患者对 AVB 质量指标的实际遵守情况。五项 QI 均符合时即为完全遵守:预防性抗生素、血管活性药物、及时进行内镜检查、内镜止血和 AVB 后使用非选择性β-受体阻滞剂。我们使用倾向匹配队列比较了完全依从组和次优依从组的 6 周死亡率:结果:共纳入 989 例 AVB 患者。完全遵守所有 AVB QI 的患者为次优组(56.5%)。对具有相似基线特征的倾向匹配队列进行的分析表明,完全遵守与较低的早期感染风险(20.0% 对 26.9%)、早期再出血风险(5.2% 对 10.2%)、6 周死亡率(8.2% 对 19.7%)和 1 年死亡率(21.3% 对 35.4%)相关(p 结论:完全遵守所有 AVB QI 的患者的死亡率较低:完全遵守 AVB QI 应成为肝硬化患者质量改进的目标。
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引用次数: 0
Impact of clonal hematopoiesis of indeterminate potential on hepatocellular carcinoma in individuals with steatotic liver disease. 具有不确定潜能的克隆造血对脂肪肝患者肝细胞癌的影响。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-03-11 DOI: 10.1097/HEP.0000000000000839
Alfredo Marchetti, Serena Pelusi, Alessio Marella, Francesco Malvestiti, Antony Ricchiuti, Luisa Ronzoni, Marta Lionetti, Vittoria Moretti, Elisabetta Bugianesi, Luca Miele, Umberto Vespasiani-Gentilucci, Paola Dongiovanni, Alessandro Federico, Giorgio Soardo, Roberta D'Ambrosio, Misti V McCain, Helen L Reeves, Vincenzo La Mura, Daniele Prati, Niccolò Bolli, Luca Valenti

Background and aims: Metabolic dysfunction-associated steatotic liver disease (MASLD) is a global epidemic and is the most rapidly rising cause of HCC. Clonal hematopoiesis of indeterminate potential (CHIP) contributes to neoplastic and cardiometabolic disorders and is considered a harbinger of tissue inflammation. CHIP was recently associated with increased risk of liver disease. The aim of this study was to examine whether CHIP is associated with HCC development in patients with SLD.

Approach and results: We considered individuals with MASLD-HCC (n=208) and controls with (n =414) and without (n =259) advanced fibrosis who underwent whole exome sequencing. CHIP was diagnosed when ≥2 variant callers identified a known myeloid mutation with variant allele frequency ≥2%. CHIP was observed in 116 participants (13.1%), most frequently in DNMT3A, TET2, TP53 , and ASXL1 , and correlated with age ( p <0.0001) and advanced liver fibrosis (p=0.001). Higher aspartate aminotransferase levels predicted non- DNMT3A -CHIP, in particular with variant allele frequency ≥10% (OR: 1.14, 1.03 -1.28 and OR: 1.30, 1.12 -1.49, respectively, p <0.05). After adjustment for sex, diabetes, and a polygenic risk, a score of inherited MASLD predisposition CHIP was associated with cirrhosis (2.00, 1.30 -3.15, p =0.02), and with HCC even after further adjustment for cirrhosis (OR: 1.81, 1.11 -2.00, 1.30 -3.15, p =0.002). Despite the strong collinearity among aging and development of CHIP and HCC, non- DNTM3A -CHIP, and TET2 lesions remained associated with HCC after full correction for clinical/genetics covariates and age (OR: 2.45, 1.35 -4.53; OR: 4.8, 1.60 -17.0, p =0.02).

Conclusions: We observed an independent association between CHIP, particularly related to non- DNTM3A and TET2 genetic lesions and MASLD-HCC.

背景目的:代谢功能障碍相关性脂肪性肝病(MASLD)是一种全球性流行病,也是肝细胞癌(HCC)发病率上升最快的原因。具有不确定潜能的克隆性造血(CHIP)会导致肿瘤和心脏代谢紊乱,并被认为是组织炎症的先兆。最近,CHIP 与肝病风险增加有关。本研究旨在探讨 CHIP 是否与 SLD 患者的 HCC 发展相关:我们考虑了接受全外显子组测序的 MASLD-HCC 患者(208 人)和有(414 人)或无(259 人)晚期纤维化的对照组。当≥2个变异调用者发现VAF≥2%的已知髓系突变时,即可诊断为CHIP:结果:116 名参与者(13.1%)中发现了 CHIP,最常见的是 DNMT3A、TET2、TP53 和 ASXL1,并与年龄相关(p结论:我们观察到 CHIP(尤其是非 DNMT3A 和 TET2 遗传病变)与 MASLD-HCC 之间存在独立关联。
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引用次数: 0
Letter to the Editor: The causal analysis of missing confounding factors for the association between HDV and specific liver events. 致编辑的信:对HDV与特定肝脏事件之间关联的缺失混杂因素进行因果分析。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-17 DOI: 10.1097/HEP.0000000000001024
Zheng Li, Yi Zhang, Ying Li, Jie Lan, Yuzhu Hu, Qianqian Meng, Laraib Nadeem, Bingwen Zou
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引用次数: 0
Reply: The causal analysis of missing confounding factors for the association between HDV and specific liver events. 回复:对 HDV 与特定肝脏事件之间关联的缺失混杂因素进行因果分析。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-17 DOI: 10.1097/HEP.0000000000001025
Robert G Gish, Robert J Wong, Gian Luca Di Tanna, Ankita Kaushik, Chong Kim, Nathaniel J Smith, Patrick T F Kennedy
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引用次数: 0
Letter to the Editor: Accurate predictor for liver disease progression in patients with DC/TBD. 准确预测 DC/TBD 患者的肝病进展。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-07-17 DOI: 10.1097/HEP.0000000000001012
Jing Zhao, Yue Bi
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引用次数: 0
Telomere dysfunction in chronic liver disease: The link from aging. 慢性肝病的端粒功能障碍:与衰老的联系。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2023-04-28 DOI: 10.1097/HEP.0000000000000426
Daniel D Penrice, Nidhi Jalan-Sakrikar, Diana Jurk, João F Passos, Douglas A Simonetto
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引用次数: 0
Simple blood tests to diagnose compensated advanced chronic liver disease and stratify the risk of clinically significant portal hypertension. 通过简单的血液检测诊断代偿性晚期慢性肝病,并对具有临床意义的门静脉高压风险进行分层。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-03-06 DOI: 10.1097/HEP.0000000000000829
Georg Semmler, Lukas Hartl, Yuly Paulin Mendoza, Benedikt Simbrunner, Mathias Jachs, Lorenz Balcar, Michael Schwarz, Benedikt Silvester Hofer, Laurenz Fritz, Anna Schedlbauer, Katharina Stopfer, Daniela Neumayer, Jurij Maurer, Robin Szymanski, Elias Laurin Meyer, Bernhard Scheiner, Peter Quehenberger, Michael Trauner, Elmar Aigner, Annalisa Berzigotti, Thomas Reiberger, Mattias Mandorfer

Background and aims: Compensated advanced chronic liver disease (cACLD) identifies patients at risk for clinically significant portal hypertension (CSPH), and thus, for liver-related complications. The limited availability of liver stiffness measurements (LSM) impedes the identification of patients at risk for cACLD/CSPH outside of specialized clinics. We aimed to develop a blood-based algorithm to identify cACLD by fibrosis-4 (FIB-4) and CSPH by von Willebrand factor/platelet count ratio (VITRO).

Approach and results: Patients with (suspected) compensated chronic liver disease undergoing FIB-4+LSM were included in the LSM/FIB-4 cohorts from Vienna and Salzburg. The HVPG/VITRO cohorts included patients undergoing HVPG-measurement + VITRO from Vienna and Bern.LSM/FIB-4-derivation-cohort: We included 6143 patients, of whom 211 (3.4%) developed hepatic decompensation. In all, 1724 (28.1%) had LSM ≥ 10 kPa, which corresponded to FIB-4 ≥ 1.75. Importantly, both LSM (AUROC:0.897 [95% CI:0.865-0.929]) and FIB-4 (AUROC:0.914 [95% CI:0.885-0.944]) were similarly accurate in predicting hepatic decompensation within 3 years. FIB-4 ≥ 1.75 identified patients at risk for first hepatic decompensation (5 y-cumulative incidence:7.6%), while in those <1.75, the risk was negligible (0.3%).HVPG/VITRO-derivation cohort: 247 patients of whom 202 had cACLD/FIB-4 ≥ 1.75 were included. VITRO exhibited an excellent diagnostic performance for CSPH (AUROC:0.889 [95% CI:0.844-0.934]), similar to LSM (AUROC:0.856 [95% CI:0.801-0.910], p = 0.351) and the ANTICIPATE model (AUROC:0.910 [95% CI:0.869-0.952], p = 0.498). VITRO < 1.0/ ≥ 2.5 ruled-out (sensitivity:100.0%)/ruled-in (specificity:92.4%) CSPH. The diagnostic performance was comparable to the Baveno-VII criteria.LSM/FIB-4-derivation cohort findings were externally validated in n = 1560 patients, while HVPG/VITRO-derivation-cohort findings were internally (n = 133) and externally (n = 55) validated.

Conclusions: Simple, broadly available laboratory tests (FIB-4/VITRO) facilitate cACLD detection and CSPH risk stratification in patients with (suspected) liver disease. This blood-based approach is applicable outside of specialized clinics and may promote early intervention.

背景目的:代偿性晚期慢性肝病(cACLD)可识别出有临床意义的门静脉高压症(CSPH)风险的患者,从而识别出与肝脏相关的并发症。肝脏僵硬度测量(LSM)的有限可用性阻碍了在专科门诊之外对有 cACLD/CSPH 风险的患者进行识别。我们的目标是开发一种基于血液的算法,通过 FIB-4 鉴别 cACLD,通过 von Willebrand 因子/血小板计数比值(VITRO)鉴别 CSPH:维也纳和萨尔茨堡的LSM/FIB-4队列中纳入了接受FIB4+LSM检查的(疑似)代偿性慢性肝病患者。HVPG/VITRO队列包括维也纳和伯尔尼接受肝静脉压力梯度(HVPG)测量+VITRO的患者。LSM/FIB-4衍生队列:我们纳入了6143名患者,其中211人(3.4%)出现肝功能失代偿。1724例(28.1%)患者的LSM≥10 kPa,相当于FIB-4≥1.75。重要的是,LSM(AUROC:0.897 [95%CI:0.865-0.929])和 FIB-4(AUROC:0.914 [95%CI:0.885-0.944])在预测 3 年内肝功能失代偿方面具有相似的准确性。FIB-4≥1.75可识别有首次肝功能失代偿风险的患者(5年累计发生率:7.6%),而在这些患者中,FIB-4≥1.75可识别有首次肝功能失代偿风险的患者(5年累计发生率:7.6%):简单、广泛可用的实验室检测(FIB-4/VITRO)有助于对(疑似)肝病患者进行 cACLD 检测和 CSPH 风险分层。这种以血液为基础的方法适用于专科门诊以外的地区,可促进早期干预。
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引用次数: 0
Variants in autophagy genes MTMR12 and FAM134A are putative modifiers of the hepatic phenotype in α1-antitrypsin deficiency. 自噬基因 MTMR12 和 FAM134A 的变异是α1-抗胰蛋白酶缺乏症肝脏表型的假定调节因子。
IF 12.9 1区 医学 Q1 GASTROENTEROLOGY & HEPATOLOGY Pub Date : 2024-10-01 Epub Date: 2024-04-01 DOI: 10.1097/HEP.0000000000000865
Edgar N Tafaleng, Jie Li, Yan Wang, Tunda Hidvegi, Alex Soto-Gutierrez, Adam E Locke, Thomas J Nicholas, Yung-Chun Wang, Stephen Pak, Michael H Cho, Edwin K Silverman, Gary A Silverman, Sheng Chih Jin, Ira J Fox, David H Perlmutter

Background and aims: In the classical form of α1-antitrypsin deficiency, a misfolded variant α1-antitrypsin Z accumulates in the endoplasmic reticulum of liver cells and causes liver cell injury by gain-of-function proteotoxicity in a sub-group of affected homozygotes but relatively little is known about putative modifiers. Here, we carried out genomic sequencing in a uniquely affected family with an index case of liver failure and 2 homozygous siblings with minimal or no liver disease. Their sequences were compared to sequences in well-characterized cohorts of homozygotes with or without liver disease, and then candidate sequence variants were tested for changes in the kinetics of α1-antitrypsin variant Z degradation in iPS-derived hepatocyte-like cells derived from the affected siblings themselves.

Approach and results: Specific variants in autophagy genes MTMR12 and FAM134A could each accelerate the degradation of α1-antitrypsin variant Z in cells from the index patient, but both MTMR12 and FAM134A variants were needed to slow the degradation of α1-antitrypsin variant Z in cells from a protected sib, indicating that inheritance of both variants is needed to mediate the pathogenic effects of hepatic proteotoxicity at the cellular level. Analysis of homozygote cohorts showed that multiple patient-specific variants in proteostasis genes are likely to explain liver disease susceptibility at the population level.

Conclusions: These results validate the concept that genetic variation in autophagy function can determine susceptibility to liver disease in α1-antitrypsin deficiency and provide evidence that polygenic mechanisms and multiple patient-specific variants are likely needed for proteotoxic pathology.

背景目的:在经典形式的α1-抗胰蛋白酶缺乏症中,折叠错误的变体α1-抗胰蛋白酶 Z 在肝细胞内质网中积聚,并通过功能增益蛋白毒性在受影响的同卵双生子亚群中导致肝细胞损伤,但人们对其潜在的调节因子知之甚少。在这里,我们对一个独特的受影响家族进行了基因组测序,该家族中有一个肝衰竭病例和两个肝病极轻或无肝病的同卵双生兄弟姐妹。我们将他们的序列与特征明确的患有或未患有肝病的同源染色体组中的序列进行了比较,然后检测了候选序列变异在来自受影响兄弟姐妹本身的 iPS 衍生肝细胞样细胞中 ATZ 降解动力学的变化:自噬基因 MTMR12 和 FAM134A 的特定变体可分别加速指标患者细胞中 ATZ 的降解,但需要 MTMR12 和 FAM134A 两个变体才能减缓受保护同胞兄弟姐妹细胞中 ATZ 的降解,这表明在细胞水平上介导肝脏蛋白毒性的致病效应需要两个变体的遗传。对同源基因队列的分析表明,蛋白稳态基因中的多种患者特异性变异很可能在人群水平上解释了肝病易感性:这些结果验证了自噬功能的遗传变异可决定ATD肝病易感性的概念,并提供了证据表明蛋白毒性病理学可能需要多基因机制和多种患者特异性变异。
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引用次数: 0
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Hepatology
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