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Chagas' disease and AIDS. 恰加斯病和艾滋病。
Pub Date : 2004-05-13 DOI: 10.1186/1475-9292-3-2
Anil K Vaidian, Louis M Weiss, Herbert B Tanowitz

Chagas' disease caused by Trypanosoma cruzi is an opportunistic infection in the setting of HIV/AIDS. Some individuals with HIV and chronic T. cruzi infection may experience a reactivation, which is most commonly manifested by meningoencephalitis. A reactivation myocarditis is the second most common manifestation. These presentations may be difficult to distinguish from toxoplasmosis in individuals with HIV/AIDS. The overlap of HIV and Trypanosoma cruzi infection occurs not only in endemic areas but also in non-endemic areas of North America and Europe where the diagnosis may be even more difficult. The pathological features, diagnosis and the role of cytokines in the pathogenesis of the disease are discussed.

由克氏锥虫引起的恰加斯病是艾滋病毒/艾滋病背景下的一种机会性感染。一些感染艾滋病毒和慢性克氏锥虫感染的个体可能会经历再激活,最常见的表现是脑膜脑炎。再活化性心肌炎是第二常见的表现。这些表现可能很难与艾滋病毒/艾滋病患者的弓形虫病区分开来。艾滋病毒和克氏锥虫感染的重叠不仅发生在流行地区,也发生在北美和欧洲的非流行地区,这些地区的诊断可能更加困难。本文讨论了该病的病理特点、诊断及细胞因子在该病发病中的作用。
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引用次数: 99
Trypanosoma rangeli Transcriptome Project: Generation and analysis of expressed sequence tags. 兰氏锥虫转录组计划:表达序列标签的生成和分析。
Pub Date : 2004-05-13 DOI: 10.1186/1475-9292-3-1
Cristiane Quimelli Snoeijer, Gisele Fernanda Picchi, Bibiana Paula Dambrós, Mário Steindel, Samuel Goldenberg, Stênio Perdigão Fragoso, Daniel Macedo Lorenzini, Edmundo Carlos Grisard

Trypanosoma rangeli is an important hemoflagellate parasite of several mammalian species in Central and South America, sharing geographical areas, vectors and reservoirs with T. cruzi, the causative agent of Chagas disease. Thus, the occurrence of single and/or mixed infections, including in humans, must be expected and are of great importance for specific diagnosis and epidemiology. In comparison to several Trypanosomatidae species, the T. rangeli biology and genome are little known, reinforcing the needs of a gene discovery initiative. The T. rangeli transcriptome initiative aims to promote gene discovery through the generation of expressed sequence tags (ESTs) and Orestes (ORF ESTs) from both epimastigote and trypomastigote forms of the parasite, allowing further studies of the parasite biology, taxonomy and phylogeny.

兰氏锥虫是中美洲和南美洲几种哺乳动物的重要血鞭毛寄生虫,与恰加斯病的病原体克氏锥虫具有相同的地理区域、媒介和宿主。因此,必须预料到包括人类在内的单一和/或混合感染的发生,这对具体诊断和流行病学具有重要意义。与几种锥虫科物种相比,T. rangeli的生物学和基因组知之甚少,加强了基因发现倡议的需求。T. rangeli转录组计划旨在通过从寄生虫的表皮马鞭毛体和锥马鞭毛体中产生表达序列标签(ESTs)和oreste (ORF ESTs)来促进基因发现,从而进一步研究寄生虫的生物学、分类和系统发育。
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引用次数: 24
Evolution of energy metabolism and its compartmentation in Kinetoplastida. Kinetoplastida 的能量代谢及其分区的演变。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-11
Véronique Hannaert, Frédéric Bringaud, Fred R Opperdoes, Paul AM Michels

Kinetoplastida are protozoan organisms that probably diverged early in evolution from other eukaryotes. They are characterized by a number of unique features with respect to their energy and carbohydrate metabolism. These organisms possess peculiar peroxisomes, called glycosomes, which play a central role in this metabolism; the organelles harbour enzymes of several catabolic and anabolic routes, including major parts of the glycolytic and pentosephosphate pathways. The kinetoplastid mitochondrion is also unusual with regard to both its structural and functional properties.In this review, we describe the unique compartmentation of metabolism in Kinetoplastida and the metabolic properties resulting from this compartmentation. We discuss the evidence for our recently proposed hypothesis that a common ancestor of Kinetoplastida and Euglenida acquired a photosynthetic alga as an endosymbiont, contrary to the earlier notion that this event occurred at a later stage of evolution, in the Euglenida lineage alone. The endosymbiont was subsequently lost from the kinetoplastid lineage but, during that process, some of its pathways of energy and carbohydrate metabolism were sequestered in the kinetoplastid peroxisomes, which consequently became glycosomes. The evolution of the kinetoplastid glycosomes and the possible selective advantages of these organelles for Kinetoplastida are discussed. We propose that the possession of glycosomes provided metabolic flexibility that has been important for the organisms to adapt easily to changing environmental conditions. It is likely that metabolic flexibility has been an important selective advantage for many kinetoplastid species during their evolution into the highly successful parasites today found in many divergent taxonomic groups.Also addressed is the evolution of the kinetoplastid mitochondrion, from a supposedly pluripotent organelle, attributed to a single endosymbiotic event that resulted in all mitochondria and hydrogenosomes of extant eukaryotes. Furthermore, indications are presented that Kinetoplastida may have acquired other enzymes of energy and carbohydrate metabolism by various lateral gene transfer events different from those that involved the algal- and alpha-proteobacterial-like endosymbionts responsible for the respective formation of the glycosomes and mitochondria.

原生动物(Kinetoplastida)是一种原生生物,可能是在进化早期从其他真核生物中分化出来的。它们在能量和碳水化合物代谢方面有许多独特之处。这些生物拥有奇特的过氧物酶体(称为糖体),在新陈代谢中发挥着核心作用;这些细胞器中含有多种分解代谢和合成代谢途径的酶,包括糖酵解途径和磷酸戊糖途径的主要部分。在这篇综述中,我们描述了奇梭菌新陈代谢的独特分区以及这种分区所产生的新陈代谢特性。我们讨论了最近提出的假说的证据,即 Kinetoplastida 和 Euglenida 的共同祖先获得了一种光合藻类作为内共生体,这与早先的观点相反,即这一事件发生在进化的较晚阶段,仅发生在 Euglenida 系。随后,内共生体从动点细胞系中消失,但在这一过程中,其能量和碳水化合物代谢的某些途径被封存在动点细胞过氧体中,从而变成了糖体。本文讨论了动点虫糖体的进化过程以及这些细胞器对动点虫可能具有的选择性优势。我们认为,糖体的存在提供了新陈代谢的灵活性,这对生物轻松适应不断变化的环境条件非常重要。在进化成今天在许多不同分类群中发现的非常成功的寄生虫的过程中,新陈代谢的灵活性很可能是许多内生寄生虫物种的一个重要选择性优势。我们还探讨了内生寄生虫线粒体的进化过程,线粒体从一个假定的多能细胞器进化而来,归因于一次内共生事件,该事件导致了现存真核生物的所有线粒体和氢体。此外,有迹象表明,Kinetoplastida 可能已经通过各种横向基因转移事件获得了能量和碳水化合物代谢的其他酶,这些事件不同于藻类和甲型蛋白细菌类内生共生体负责各自形成糖体和线粒体的事件。
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引用次数: 0
Molecular phylogenetics of Trypanosomatidae: contrasting results from 18S rRNA and protein phylogenies. 锥虫科分子系统发育:18S rRNA和蛋白质系统发育的对比结果。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-15
Austin L Hughes, Helen Piontkivska

Phylogenetic analyses of the family Trypanosomatidae have been conducted using both 18S rRNA gene sequences and a variety of protein sequences. Using a variety of phylogenetic methods, 18S rRNA phylogenies indicate that the genus Trypanosoma is not monophyletic. Rather, they suggest that the American and African trypanosomes constitute distinct clades. By contrast, phylogenetic analyses of available sequences in 42 protein families gene generally supported monophyly of the genus Trypanosoma. One possible explanation for these conflicting results is poor taxon sampling in the case of protein coding genes, most of which have been sequenced for only a few species of Trypanosomatidae.

利用18S rRNA基因序列和多种蛋白序列对锥虫科进行了系统发育分析。使用多种系统发育方法,18S rRNA系统发育表明锥虫属不是单系的。相反,他们认为美洲和非洲锥虫构成了不同的分支。相比之下,42个蛋白家族基因序列的系统发育分析普遍支持锥虫属的单系性。对这些相互矛盾的结果的一种可能的解释是,在蛋白质编码基因的情况下,分类单元取样不佳,其中大多数仅对锥虫科的少数物种进行了测序。
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引用次数: 142
Species concepts for trypanosomes: from morphological to molecular definitions? 锥虫的物种概念:从形态学到分子定义?
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-10
Wendy Gibson

The way species and subspecies names are applied in African trypanosomes of subgenera Trypanozoon and Nannomonas is reviewed in the light of data from molecular taxonomy. In subgenus Trypanozoon the taxonomic importance of pathogenicity, host range and distribution appear to have been inflated relative to actual levels of genetic divergence. The opposite is true for subgenus Nannomonas, where current taxonomic usage badly underrepresents genetic diversity. Data from molecular characterisation studies are revealing a growing number of genotypes, which may represent distinct taxa. Unfortunately few of these genotypes are yet supported by sufficient biological data to be recognized taxonomically. But we may be missing fundamental epidemiological information, because of our inability to distinguish these trypanosomes in host blood morphologically or in tsetse by their developmental cycle. Molecular taxonomy has led the way in identifying these new genotypes and now offers the key to elucidating the biology of these organisms.

结合分子分类学资料,综述了非洲锥虫亚属锥虫和纳米单胞菌属锥虫的种和亚种命名方法。在锥虫亚属中,致病性、宿主范围和分布的分类学重要性相对于遗传分化的实际水平似乎被夸大了。纳米单胞菌亚属的情况正好相反,目前的分类使用严重低估了遗传多样性。来自分子特征研究的数据揭示了越来越多的基因型,这些基因型可能代表不同的分类群。不幸的是,这些基因型中很少有足够的生物学数据支持,无法在分类学上得到识别。但我们可能缺少基本的流行病学信息,因为我们无法通过宿主血液形态或采采周期来区分这些锥虫。分子分类学引领了鉴定这些新基因型的道路,现在为阐明这些生物的生物学提供了关键。
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引用次数: 36
Towards a framework for the evolutionary genomics of Kinetoplastids: what kind of data and how much? 为着丝质体的进化基因组学建立框架:需要什么样的数据和多少数据?
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-16
Alberto MR Dávila, Julius Lukes;

The current status of kinetoplastids phylogeny and evolution is discussed in view of the recent progresses on genomics. Some ideas on a potential framework for the evolutionary genomics of kinetoplastids are presented.

结合基因组学研究的最新进展,综述了着丝质体的系统发育和进化现状。对着丝质体进化基因组学的潜在框架提出了一些想法。
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引用次数: 3
Evaluation of a polymerase chain reaction assay for the diagnosis of bovine trypanosomiasis and epidemiological surveillance in Bolivia. 玻利维亚牛锥虫病的聚合酶链反应诊断及流行病学监测评价。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-8
Jose Luis Gonzales, Tudor W Jones, Kim Picozzi, Hugo Ribera Cuellar

BACKGROUND: Sporadic outbreaks of bovine trypanosomiasis have been reported in Bolivia since 1996 when T. vivax and T. evansi were identified for the first time by parasitological means. However, comprehensive epidemiological information concerning T. vivax and T. evansi in the country is lacking. Current parasitological and serological diagnostic methods for trypanosomiasis have important limitations either in their sensitivity or specificity, which can result in unreliable data when applied in epidemiological studies. PCR assays are a recently developed procedure that might help to overcome the constraints of parasitological and serological assays. Therefore, the objective of this study was to evaluate PCR assays as a diagnostic tool for epidemiological studies in Bolivia. RESULTS: PCR assays for diagnosis of trypanosome infection in cattle were evaluated for their ability to detect trypanosome DNA in blood spots samples collected from cattle in four different provinces from the Bolivian lowlands and the results compared with those obtained with standard parasitological Micro Haematocrit Centrifugation Technique (MHCT) and stained smears and serological methods (Card Agglutination Test for T. evansi (CATT), and Antibody ELISAs for T. vivax and T. congolense). Kappa agreement analysis showed a significant agreement between PCR assays and results from parasitological methods but there was no agreement when PCR was compared with serological assays. Some samples from T. vivax smear positive animals were negative by PCR, therefore modifications to the PCR assay conditions were undertaken to try to improve agreement between PCR and parasitological assays. Changes in the template DNA concentration or the use of an alternative primer set resulted in improvements in the PCR detection rate, but not all the parasitologically positive samples were detected by PCR. Results from PCR assays for T. vivax and T. evansi were combined with results from parasitological and serological assays to provide information on prevalence rates for the four provinces from where the samples were obtained. CONCLUSION: The present study established evidence of the usefulness of PCR as diagnostic tool for epidemiological studies and confirmed that cattle trypanosomiasis appears to be endemic in several regions of the Bolivian lowlands.

背景:自1996年首次通过寄生虫学方法发现间日疟原虫和伊瓦西疟原虫以来,玻利维亚报告了牛锥虫病的零星暴发。然而,该国缺乏关于间日疟原虫和伊文氏疟原虫的全面流行病学信息。目前用于锥虫病的寄生虫学和血清学诊断方法在敏感性或特异性方面存在重大局限性,这可能导致在流行病学研究中应用时数据不可靠。PCR检测是最近发展起来的一种方法,可能有助于克服寄生虫学和血清学检测的局限性。因此,本研究的目的是评价PCR检测作为玻利维亚流行病学研究的诊断工具。结果:对用于诊断牛锥虫感染的PCR检测方法在玻利维亚低地4个不同省份采集的牛血斑样本中检测锥虫DNA的能力进行了评估,并将结果与标准寄生虫学微红细胞压积离心技术(MHCT)、染色涂片和血清学方法(伊万氏绦虫卡凝集试验(CATT)、间日疟原虫和刚果锥虫抗体elisa)获得的结果进行了比较。Kappa一致性分析显示,PCR检测结果与寄生虫学检测结果有显著的一致性,但与血清学检测结果不一致。一些间日疟原虫涂片阳性动物的样本经PCR检测呈阴性,因此对PCR检测条件进行了修改,试图提高PCR与寄生虫学检测结果之间的一致性。改变模板DNA浓度或使用其他引物组可提高PCR检出率,但并非所有寄生虫学阳性样品都能被PCR检测到。将间日疟原虫和伊文氏疟原虫的PCR检测结果与寄生虫学和血清学检测结果相结合,以提供获取样本的4个省份的流行率信息。结论:本研究确立了PCR作为流行病学研究诊断工具的有效性证据,并证实牛锥虫病似乎在玻利维亚低地的几个地区流行。
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引用次数: 32
Physiological consequences of drug resistance in Leishmania and their relevance for chemotherapy. 利什曼原虫耐药的生理后果及其与化疗的相关性。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-14
Alicia Ponte-Sucre

In the early twentieth century, infectious diseases were a leading cause of death worldwide. Through the following years, morbidity and mortality caused by infectious diseases decreased considerably in the developed world, but not in the developing world, where infectious diseases remain an important reason for concern. For example, leishmaniosis has become into a serious Third World problem. This is mainly due to an increasing frequency of drug-resistance in Leishmania and an enhanced risk of co-infection with HIV. Drug-resistance is usually associated with an increased expression of specific P-glycoproteins involved in membrane transport. The present review summarizes information which shows that drug-resistance is also associated with changes in physiological events such as parasite infectivity, incorporation of metabolites, xenobiotics conjugation and traffic, intracellular metabolism, host-parasite interaction, parasite cell shape and promastigote-amastigote differentiation. Furthermore, these events may change in a coordinated manner. An understanding of these physiological events may be helpful for designing chemotherapeutic approaches to multiple cellular targets, identifying strategies to circumvent Leishmania drug-resistance and succesfully treating leishmaniosis.

在二十世纪早期,传染病是世界范围内导致死亡的主要原因。在随后的几年中,发达国家因传染病引起的发病率和死亡率大幅下降,但发展中国家却没有,因为传染病仍然是发展中国家令人关切的一个重要原因。例如,利什曼病已成为第三世界的一个严重问题。这主要是由于利什曼原虫耐药频率增加以及与艾滋病毒合并感染的风险增加。耐药通常与参与膜运输的特异性p糖蛋白表达增加有关。本文综述了耐药与寄生虫感染、代谢物掺入、外源药物结合和运输、细胞内代谢、宿主-寄生虫相互作用、寄生虫细胞形状和原鞭毛体-无尾鞭毛体分化等生理事件的变化有关。此外,这些事件可能以协调的方式发生变化。了解这些生理事件可能有助于设计针对多细胞靶点的化疗方法,确定规避利什曼原虫耐药性的策略,并成功治疗利什曼原虫病。
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引用次数: 43
Genetic subdivisions within Trypanosoma cruzi (Discrete Typing Units) and their relevance for molecular epidemiology and experimental evolution. 克氏锥虫的遗传细分及其与分子流行病学和实验进化的相关性。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-12
Michel Tibayrenc

BACKGROUND: This paper summarizes the main results obtained on Trypanosoma cruzi genetic diversity and population structure since this parasite became the theme of many genetic and molecular studies in the early seventies. RESULTS: T. cruzi exibits a paradigmatic pattern of long-term, clonal evolution, which has structured its natural populations into several discrete genetic subdivisions or "Discrete Typing Units" (DTU). Rare hybridization events are nevertheless detectable in natural populations and have been recently obtained in the laboratory. CONCLUSIONS: The DTUs and natural clones of T. cruzi constitute relevant units for molecular epidemiology and experimental evolution. Experimental mating opens the way to an in-depth knowledge of this parasite's formal genetics.

背景:本文综述了自上世纪70年代初克氏锥虫遗传多样性和种群结构成为许多遗传和分子研究的主题以来所取得的主要成果。结果:克氏T. crozi表现出一种长期的、克隆进化的范例模式,这种模式将其自然种群结构成几个离散的遗传细分或“离散分型单元”(DTU)。然而,在自然种群中可以检测到罕见的杂交事件,并且最近在实验室中获得了这些杂交事件。结论:克氏锥虫dtu与自然克隆构成分子流行病学和实验进化的相关单位。实验交配为深入了解这种寄生虫的正式遗传学开辟了道路。
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引用次数: 66
Chagas disease and HIV co-infection: genetic analyses of two Trypanosoma cruzi strains under experimental immunosuppression. 南美锥虫病和艾滋病毒双重感染:实验性免疫抑制下两种南美锥虫菌株的基因分析。
Pub Date : 2003-10-28 DOI: 10.1186/1475-9292-2-17
Célia M Marques De Brito, Marize Q Pires, Raquel S Pacheco

BACKGROUND: Recently new aspects of the immunopathology of Chagas disease have been described in patients infected with HIV and unusual clinical manifestations such as cutaneous lesions, involvement of central nervous system and/or serious cardiac lesions related to the reactivation of the parasite have been reported. Two uncloned Trypanosoma cruzi strains previously isolated from chronic chagasic patients with HIV co-infection were studied in order to evaluate the impact of the immunosuppression on the genetic diversity of the parasite. RESULTS: We have exploited an experimental model to determine whether genetically distinct populations appear after immunosuppression as a consequence of in vivo selection or in vitro propagation. The in vitro and in vivo conditions have allowed us to study the selected populations. The first strain was isolated from a case of reactivation of Chagas disease in a patient which presented four cerebral lesions. It was possible to demonstrate that the patient was infected with at least three distinct populations of T. cruzi. The population, recovered after immunosuppression, in mice was genetically divergent from the primary human isolate. The second strain, isolated from a hemophiliac/HIV positive patient presenting cardiac manifestation of Chagas disease showed no marked genetic difference after experimental immunosuppression. CONCLUSION: The immunological condition of the patient, associated or not to the reactivation of the infection, and also the strain of the parasite may have an important role during the course of the disease. The in vivo mechanism that generates parasite genetic variability or the participation of the selection under stress conditions will require further investigation.

背景:最近,在感染艾滋病毒的患者中发现了恰加斯病免疫病理的新方面,并报道了与寄生虫再活化有关的异常临床表现,如皮肤病变、中枢神经系统受累和/或严重的心脏病变。为了评估免疫抑制对寄生虫遗传多样性的影响,我们对之前从合并感染艾滋病毒的慢性南美锥虫病患者体内分离出的两株未克隆的克鲁斯锥虫菌株进行了研究。结果:我们利用一个实验模型来确定免疫抑制后是否会出现基因不同的种群,这是体内选择还是体外繁殖的结果。在体外和体内条件下,我们研究了被选择的种群。第一个菌株是从一个南美锥虫病再活化病例中分离出来的,该病例的患者有四个脑部病变。结果表明,该患者至少感染了三种不同的 T. cruzi 群体。在小鼠体内经过免疫抑制后恢复的群体在遗传学上与原发性人类分离株不同。第二个菌株是从一名血友病患者/艾滋病毒阳性患者身上分离出来的,该患者有恰加斯病的心脏表现,在实验性免疫抑制后没有发现明显的基因差异。结论:患者的免疫状况、是否与感染再活化有关以及寄生虫的菌株可能在疾病过程中起着重要作用。寄生虫基因变异的体内机制或应激条件下的选择参与还需要进一步研究。
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引用次数: 0
期刊
Kinetoplastid Biology and Disease
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