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MS Platform for Erythropoietin Glycome Characterization 促红细胞生成素糖苷表征的MS平台
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-30 DOI: 10.5478/MSL.2015.6.3.53
Youngsuk Seo, Unyong Kim, M. Oh, Nayoung Yun, H. An
Recombinant erythropoietins (EPOs) are an important class of biotherapeutics that stimulate red blood cell produc- tion. The quality, safety, and potency of EPO variants are determined largely by their glycosylation, which makes up nearly half their mass. Thus, detailed glycomic analyses are important to assess biotherapeutic quality and establish the equivalency of bio- similar EPOs now coming to market. High-resolution mass spectrometry (MS) has recently emerged as the premier tool for gly- can analysis in EPOs. Using the accurate mass measurements provided by high-resolution MS, the compositions of even large, complex glycans can easily be determined. When combined with a nano-LC separation, differentiation of structural isomers also becomes a possibility. These components, together, provide a comprehensive picture of biotherapeutic glycosylation. In this review, we provide an overview of MS-based analytical platform for glycomic characterization of EPO biotherapeutics and bio- similars.
重组红细胞生成素(EPOs)是一类重要的刺激红细胞生成的生物治疗药物。EPO变体的质量、安全性和效力很大程度上取决于它们的糖基化,糖基化占其质量的近一半。因此,详细的糖糖分析对于评估生物治疗质量和确定即将上市的生物类似epo的等效性非常重要。高分辨率质谱法(MS)最近成为epo中gly- can分析的首要工具。利用高分辨率质谱提供的精确质量测量,可以很容易地确定大而复杂的聚糖的组成。当与纳米lc分离相结合时,结构异构体的分化也成为可能。这些成分共同提供了生物治疗糖基化的全面图景。在这篇综述中,我们提供了基于质谱的EPO生物治疗药物和生物类似药糖糖特征分析平台的概述。
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引用次数: 7
Optimum Radius Size between Cylindrical Ion Trap and Quadrupole Ion Trap 圆柱形离子阱和四极离子阱的最佳半径尺寸
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-30 DOI: 10.5478/MSL.2015.6.3.59
S. S. Chaharborj, S. Kiai, N. Arifin, Y. Gheisari
Quadrupole ion trap mass analyzer with a simplified geometry, namely, the cylindrical ion trap (CIT), has been shown to be well-suited using in miniature mass spectrometry and even in mass spectrometer arrays. Computation of stability regions is of particular importance in designing and assembling an ion trap. However, solving CIT equations are rather more dif- ficult and complex than QIT equations, so, analytical and matrix methods have been widely used to calculate the stability regions. In this article we present the results of numerical simulations of the physical properties and the fractional mass resolu- tions of the confined ions in the first stability region was analyzed by the fifth order Runge-Kutta method (RKM5) at the optimum radius size for both ion traps. Because of similarity the both results, having determining the optimum radius, we can make much easier to design CIT. Also, the simulated results has been performed a high precision in the resolution of trapped ions at the optimum radius size.
四极离子阱质谱分析仪具有简化的几何形状,即圆柱形离子阱(CIT),已被证明非常适合用于微型质谱分析甚至质谱阵列。稳定区域的计算在离子阱的设计和组装中尤为重要。然而,求解CIT方程比求解QIT方程要困难和复杂得多,因此,分析和矩阵方法被广泛应用于稳定区域的计算。本文给出了两种离子阱在最佳半径尺寸下的物理性质的数值模拟结果,并用五阶龙格-库塔方法(RKM5)分析了第一稳定区内受限离子的分数质量分辨率。由于两种结果的相似性,确定了最佳半径,可以简化CIT的设计,并且模拟结果在最佳半径尺寸下对捕获离子的分辨率有较高的精度。
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引用次数: 3
Synthesis and Fragmentation Behavior Study of n-alkyl/benzyl Isatin Derivatives Present in Small/Complex Molecules: Precursor for the Preparation of Biological Active Heterocycles 小/复杂分子中n-烷基/苄基Isatin衍生物的合成及断裂行为研究:制备生物活性杂环的前体
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-30 DOI: 10.5478/MSL.2015.6.3.65
A. Kadi, Nasser S Al-Shakliah, A. M. Rahman
N-Alkyl/benzyl substituted isatin derivatives are intermediates and synthetic precursors for the preparation of biolog- ical active heterocycles. N-alkyl/benzyl isatins have showed various biological activities, such as cytotoxicity, antiviral, caspase inhibition, cannabinoid receptor 2 agonists for the treatment of neuropathic pain, etc. In this study, N-alkyl/benzyl isatin deriva- tives were synthesized from isatin and alkyl/benzyl halides in presence of K2CO3 in DMF and excellent to quantitative yields (~95%) were obtained. Isatins and benzyl-isatins were condensed with fluorescein hydrazide to form fluorescein hydrazone. All the compounds were subjected to their fragmentation behavior study using LC/MS n . N-Alkyl substituted isatin derivatives frag- mented at nitrogen-carbon (N-C) bond, hence gave daughter ion as (RN+H) + . Whereas, N-benzyl substituted isatin derivatives fragmented at carbon-carbon (C-C) bond of alkyl chain which linked with nitrogen molecules, therefore gave N-methyl frag- ments (RNCH2) + . This study demonstrated that, isatin moiety present in a small/large molecule or in a matrix of reaction mixture with/without N-alkyl/benzyl substituents can be identified by mass spectroscopic fragmentation behavior study.
n -烷基/苄基取代异黄酮衍生物是制备生物活性杂环化合物的中间体和合成前体。n -烷基/苄基isatin已显示出多种生物活性,如细胞毒性、抗病毒、半胱天冬酶抑制、大麻素受体2激动剂治疗神经性疼痛等。在DMF中,在K2CO3的存在下,以isatin和烷基/苄基卤化物为原料合成了n -烷基/苄基isatin衍生物,并获得了优良的定量产率(~95%)。Isatins和苄基Isatins与荧光素肼缩合形成荧光素腙。采用LC/MS对所有化合物的断裂行为进行了研究。n-烷基取代的isatin衍生物在氮碳(N-C)键上断裂,因此产生子离子(RN+H) +。而n-苄基取代的isatin衍生物在与氮分子连接的烷基链碳-碳(C-C)键处断裂,因此得到n-甲基片段(RNCH2) +。本研究表明,通过质谱断裂行为研究,可以识别存在于小分子/大分子或有/没有n -烷基/苄基取代基的反应混合物基质中的isatin片段。
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引用次数: 2
MALDI-TOF Analysis of Binding between DNA and Peptides Containing Lysine and Tryptophan DNA与含赖氨酸和色氨酸肽结合的MALDI-TOF分析
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-30 DOI: 10.5478/MSL.2015.6.3.80
Seonghyun Lee, Sojeong Choe, Yeeun Oh, K. Jo
Here, we demonstrate the use of MALDI-TOF as a fast and simple analytical approach to evaluate the DNA-binding capability of various peptides. Specifically, by varying the amino acid sequence of the peptides consisting of lysine (K) and tryptophan (W), we identified peptides with strong DNA-binding capabilities using MALDI-TOF. Mass spectrometric analysis reveals an interesting novel finding that lysine residues show sequence selective preference, which used to be considered as mediator of electrostatic interactions with DNA phosphate backbones. Moreover, tryptophan residues show higher affinity to DNA than lysine residues. Since there are numerous possible combinations to make peptide oligomers, it is valuable to introduce a simple and reliable analytical approach in order to quickly identify DNA-binding peptides.
在这里,我们展示了使用MALDI-TOF作为一种快速和简单的分析方法来评估各种肽的dna结合能力。具体来说,通过改变由赖氨酸(K)和色氨酸(W)组成的肽的氨基酸序列,我们使用MALDI-TOF鉴定出具有强dna结合能力的肽。质谱分析揭示了一个有趣的新发现,赖氨酸残基表现出序列选择偏好,这被认为是与DNA磷酸骨架静电相互作用的介质。此外,色氨酸残基对DNA的亲和力高于赖氨酸残基。由于有许多可能的组合来制造肽寡聚物,因此引入一种简单可靠的分析方法来快速鉴定dna结合肽是有价值的。
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引用次数: 0
Validation of Bulk Analysis with Simulated Swipe Samples Containing Ultra-Trace Amounts of Uranium and Plutonium Using MC-ICP-MS MC-ICP-MS对含有超痕量铀和钚的模拟滑动样品的批量分析验证
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-30 DOI: 10.5478/MSL.2015.6.3.75
S. Lim, Sun-ho Han, Jong-Ho Park, Ranhee Park, Min Young Lee, Jinkyu Park, Chi-Gyu Lee, K. Song
Suitable analytical procedures for the bulk analysis of ultra-trace amounts of uranium and plutonium have been developed using multi-collector inductively coupled mass spectrometry (MC–ICP–MS). The quantification and determination of the isotopic ratios of uranium and plutonium in three simulated swipe samples, a swipe blank, and a process blank were performed to validate the analytical performance. The analytical results for the simulated swipe samples were in good agreement with the certified values, based on the measurement quality goals for the analysis of bulk environmental samples recommended by the International Atomic Energy Agency (IAEA)
采用多收集器电感耦合质谱法(MC-ICP-MS)开发了适用于大量分析超痕量铀和钚的分析方法。对模拟刷样、刷样空白和工艺空白中的铀和钚同位素比值进行了定量和测定,以验证分析性能。基于国际原子能机构(IAEA)推荐的散装环境样品分析的测量质量目标,模拟滑动样品的分析结果与认证值吻合良好。
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引用次数: 5
Peltier heating-assisted low temperature plasma ionization for ambient mass spectrometry Peltier加热辅助低温等离子体电离用于环境质谱分析
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-09-15 DOI: 10.5478/MSL.2015.6.3.71
H. Lee, Jisun Oh, S. W. Heo, J. Moon, Jeong-Hoon Kim, Sung Goo Park, B. Park, G. Kweon, Y. Yim
Low temperature plasma (LTP) ionization mass spectrometry (MS) is one of the widely used ambient analysis methods which allows soft-ionization and rapid analysis of samples in ambient condition with minimal or no sample preparation. One of the major advantages of LTP MS is selective analysis of low-molecular weight, volatile and lowto medium-polarity analytes in a sample. On the contrary, the selectivity for particular class of compound also implies its limitation in general analysis. One of the critical factors limiting LTP ionization efficiency is poor desorption of analytes with low volatility. In this study, a home-built LTP ionization source with Peltier heating sample stage was constructed to enhance desorption and ionization efficiencies of analytes in a sample and its performance was evaluated using standard mixture containing fatty acid ethyl esters (FAEEs). It was also used to reproduce the previous bacterial identification experiment using pattern-recognition for FAEEs. Our result indicates, however, that the bacterial differentiation from FAEE pattern recognition using LTP ionization MS still has many limitations.
低温等离子体(LTP)电离质谱(MS)是一种广泛应用的环境分析方法,它可以在环境条件下对样品进行软电离和快速分析,而无需制备样品。LTP质谱的主要优点之一是可选择性分析样品中的低分子量、易挥发性和中低极性分析物。相反,对特定种类化合物的选择性也意味着它在一般分析中的局限性。限制LTP电离效率的关键因素之一是低挥发性分析物的脱附性差。为了提高样品中分析物的解吸和电离效率,本研究构建了带有Peltier加热样品级的自制LTP电离源,并使用含有脂肪酸乙酯(FAEEs)的标准混合物对其性能进行了评估。它也被用来复制以前的细菌鉴定实验使用模式识别faee。然而,我们的结果表明,使用LTP电离质谱从FAEE模式识别中区分细菌仍然有许多局限性。
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引用次数: 7
Evaluation of Metabolic Stability of Kinsenoside, an Antidiabetic Candidate, in Rat and Human Liver Microsomes 抗糖尿病候选物人参皂苷在大鼠和人肝微粒体中的代谢稳定性评价
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-06-30 DOI: 10.5478/MSL.2015.6.2.48
S. Rehman, N. Kim, M. Choi, Zeng-wei Luo, Guangmin Yao, Yongbo Xue, Yonghui Zhang, H. Yoo
Kinsenoside is a principle bioactive compound of Anoectochilus formosanus. It exhibits various pharmacological effects such as antihyperglycemic, antioxidant, anti-inflammatory, immunostimulating, and hepatoprotective activities and has recently been developed as an antidiabetic drug candidate. In this study, as part of an in vitro pharmacokinetic study, the stability of kinsenoside in rat and human liver microsomes was evaluated. Kinsenoside was found to have good metabolic stability in both rat and human liver microsomes. These results will provide useful information for further in vivo pharmacokinetic and metabolism studies.
仙桃皂苷是仙桃的主要生物活性化合物。它具有多种药理作用,如抗高血糖、抗氧化、抗炎、免疫刺激和肝保护活性,最近被开发为抗糖尿病候选药物。在本研究中,作为体外药代动力学研究的一部分,对人参皂苷在大鼠和人肝微粒体中的稳定性进行了评价。人参皂苷在大鼠和人肝微粒体中均具有良好的代谢稳定性。这些结果将为进一步的体内药代动力学和代谢研究提供有用的信息。
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引用次数: 8
Enrichment Strategies for Identification and Characterization of Phosphoproteome 磷酸化蛋白质组鉴定和表征的富集策略
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-06-30 DOI: 10.5478/MSL.2015.6.2.31
Sun-Young Lee, Dukjin Kang, Jongki Hong
Phosphorylation upon protein is well known to a key regulator that implicates in modulating many cellular processes like growth, migration, and differentiation. Up to date, grafting of multidimensional separation techniques onto advanced mass spectrometry (MS) has emerged as a promising tool for figuring out the biological functions of phosphorylation in a cell. How- ever, advanced MS-based phosphoproteomics is still challenging, due to its intrinsic issues, i.e., low stoichiometry, less suscepti- bility in positive ion mode, and low abundance in biological sample. To overcome these bottlenecks, diverse techniques (e.g., SCX, HILIC, ERLIC, IMAC, TiO2, etc.) are continuously developed for on-/off-line enrichment of phosphorylated protein (or peptide) from biological samples, thereby helping qualitative/quantitative determination of phosphorylated protein and its phos- phorylated sites. In this review, we introduce to the overall views of enrichment tools that are universally used to selectively iso- late targeted phosphorylated protein (or peptide) from ordinary ones before MS-based phospoproteomic analysis.
众所周知,蛋白质磷酸化是一个关键的调节因子,涉及调节许多细胞过程如生长、迁移和分化。到目前为止,将多维分离技术嫁接到先进的质谱(MS)上已经成为研究细胞磷酸化生物学功能的一种很有前途的工具。然而,由于其固有的问题,即低化学计量学,在正离子模式下的敏感性较低,以及生物样品中的丰度较低,先进的MS-based磷酸化蛋白质组学仍然具有挑战性。为了克服这些瓶颈,各种技术(如SCX、HILIC、ERLIC、IMAC、TiO2等)不断被开发出来,用于从生物样品中在线/离线富集磷酸化蛋白(或肽),从而有助于定性/定量测定磷酸化蛋白及其磷酸化位点。在本文中,我们介绍了富集工具的总体观点,这些富集工具普遍用于在基于质谱的磷酸化蛋白组学分析之前,从普通磷酸化蛋白(或肽)中选择性地分离出晚期靶向磷酸化蛋白(或肽)。
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引用次数: 0
Sample Preparation for Matrix-Assisted Laser Desorption/Ionization Mass Spectrometry 基质辅助激光解吸/电离质谱的样品制备
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-06-30 DOI: 10.5478/MSL.2015.6.2.27
Jeongkwon Kim
This article reviews the fundamentals of sample preparation used in matrix-assisted laser desorption/ionization-mass spectrometry (MALDI-MS). MALDI is a soft ionization method used to generate analyte ions in their intact forms, which are then detected in MS analysis. MALDI-MS boasts fast analysis times and easy-to-use operation. The disadvantages of MALDI-MS include the occurrence of matrix-associated peaks and inhomogeneous distribution of analyte within the matrix. To overcome the disadvan- tages of MALDI-MS, various efforts have been directed such as using different matrices, novel matrix systems, various additives, and different sample preparation methods. These various efforts will be discussed in detail. This article will benefit those who would like to obtain basic knowledge of MALDI sample preparation and those who would like to use MALDI-MS in their chemical analyses.
本文综述了基质辅助激光解吸/电离-质谱(MALDI-MS)中样品制备的基本原理。MALDI是一种软电离方法,用于生成完整形式的分析物离子,然后在质谱分析中检测。MALDI-MS具有快速的分析时间和易于使用的操作。MALDI-MS的缺点包括基质相关峰的出现和分析物在基质内的不均匀分布。为了克服MALDI-MS的缺点,人们做出了各种努力,如使用不同的基质、新型基质体系、各种添加剂和不同的样品制备方法。我们将详细讨论这些不同的努力。本文将有利于那些想要获得MALDI样品制备的基本知识和那些想要在化学分析中使用MALDI- ms的人。
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引用次数: 13
Identification of Degradation Products in the Phosphodiesterase (PDE-4) Inhibitor Roflumilast Using High Resolution Mass Spectrometry and Density Functional Theory Calculations 磷酸二酯酶(PDE-4)抑制剂罗氟米司特降解产物的高分辨率质谱分析和密度泛函理论计算
IF 0.5 Q4 Biochemistry, Genetics and Molecular Biology Pub Date : 2015-06-30 DOI: 10.5478/MSL.2015.6.2.38
S. K. Paul, Upendra N. Dash
Roflumilast analogs are a group of drugs which act as selective photodiesterase (PDE-4) inhibitor for the treatment severe chronic pulmonary disease associated with chronic brochnonities. Structural identification of degradation products using high resolu- tion mass spectrometry and theoretical investigation by density functional theory have been successfully carried out on roflumilast to identify four degradation products namely, 3,5-dichloropyridin-4-amine, N-(3,5-dichloropyridin-4-yl)-4-(difluoromethoxy)-3-hydroxy benzamide, N-(3,5-dichloropyridin-4-yl)-3-(cyclopropylmethoxy)-4-(difluoromethoxy) benzamide and 3-(cyclopropylmethoxy)-N- (3,5-dichloro-1-oxidopyridin-4-yl)-4-(difluoro methoxy) benzamide, generated in alkali, acidic and oxidative conditions.
罗氟司特类似物是一组作为选择性光二酯酶(PDE-4)抑制剂的药物,用于治疗与慢性支气管疾病相关的严重慢性肺部疾病。采用高分辨率质谱法对罗氟司特的降解产物进行了结构鉴定,并利用密度泛函数理论对其进行了理论研究,鉴定出了4种降解产物:3,5-二氯吡啶-4-胺、N-(3,5-二氯吡啶-4-基)-4-(二氟甲氧基)-3-羟基苯甲酰胺、N-(3,5-二氯吡啶-4-基)-3-(环丙基甲氧基)-4-(二氟甲氧基)苯酰胺和3-(环丙基甲氧基)-N-(3,5-二氯-1-氧化吡啶-4-基)-4-(二氟甲氧基)苯酰胺,分别在碱、酸和氧化条件下生成。
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引用次数: 3
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Mass Spectrometry Letters
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