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Genomic and functional characterization of a lipopeptide-producing endophytic Bacillus velezensis EL isolated from Euphorbia cyparissias L. 一株产脂肽内生芽孢杆菌(Bacillus velezensis)的基因组学和功能分析。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s12934-025-02882-y
Drożdżyński Piotr, Rutkowska Natalia, Popińska Kinga, Boruta Tomasz, Marchut-Mikolajczyk Olga
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引用次数: 0
Silver nanoparticles fabricated using phycocyanin from Arthrospira platensis: green synthesis, physicochemical characterization, and biological activities. 利用Arthrospira platensis藻蓝蛋白制备纳米银:绿色合成、物理化学特性和生物活性。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s12934-025-02871-1
Ani Harutyunyan, Astghik Hambardzumyan, Liana Gabrielyan, Anush Aghajanyan, Meri Kocharyan, Nikolay Avtandilyan, Alina Zurnachyan, Inga Bazukyan, Wojciech Kujawski, Lilit Gabrielyan

Background: Cyanobacteria and their bioactive components represent a promising potential for the green synthesis of nanoparticles. This work investigates the physicochemical characteristics and biological activities of silver nanoparticles (PC-AgNPs) synthesized using phycocyanin, a photosynthetic pigment extracted from the cyanobacterium Arthrospira platensis Pc-005.

Results: The phycocyanin-derived AgNPs were characterized using UV-Vis spectroscopy, transmission electron microscopy (TEM), Fourier Transform Infrared Spectroscopy (FTIR), X-Ray Diffraction (XRD), Energy Dispersive X-Ray Spectroscopy (EDX), and Dynamic light scattering (DLS). Physicochemical analysis confirmed the formation of PC-AgNPs, and revealed their nanoscale size, crystalline nature and purity. PC-AgNPs demonstrated a UV-Vis absorption peak at 410 nm. TEM analysis revealed that phycocyanin-derived AgNPs were spherical in shape with an average diameter of 20.0 ± 4.2 nm. XRD and EDX analyses confirmed the crystallinity and purity of PC-AgNPs. FTIR analysis revealed the involvement of phycocyanin functional groups in AgNPs formation. The results demonstrated that PC-AgNPs exhibited strong antimicrobial activity against opportunistic pathogenic bacteria Pseudomonas aeruginosa, Salmonella typhimurium, Staphylococcus aureus, as well as fungi Aspergillus flavus, Penicillium aurantioviolaceum, and Trichoderma viride. The findings indicated that significantly higher concentration of PC-AgNPs was needed to achieve antifungal activity compared to antibacterial activity. The PC-AgNPs also affected the activity of crucial antioxidant enzymes, such as superoxide dismutase and catalase, which play key role in the bacterial defense against oxidative stress induced by AgNPs. Moreover, PC-AgNPs demonstrated significant concentration-dependent anticancer activity against A549 adenocarcinoma cells. They also inhibited key angiogenic factors, including VEGF-A and MMP-2, as well as inflammation-related markers such as TNF-α and COX-2.

Conclusion: Thus, this study provides a comprehensive physicochemical and biological characterization of silver nanoparticles derived from the phycocyanin of A. platensis. The PC-AgNPs exhibit a broad spectrum of biological activities, underscoring their promising potential for innovative applications in biomedical and biotechnological fields.

背景:蓝藻及其生物活性成分代表了纳米颗粒绿色合成的巨大潜力。本文研究了从platarthrospira Arthrospira Pc-005中提取的光合色素藻蓝蛋白合成的银纳米粒子(PC-AgNPs)的物理化学特性和生物活性。结果:采用紫外可见光谱(UV-Vis)、透射电子显微镜(TEM)、傅里叶变换红外光谱(FTIR)、x射线衍射(XRD)、能量色散x射线光谱(EDX)和动态光散射(DLS)对藻蓝蛋白衍生的AgNPs进行了表征。物理化学分析证实了PC-AgNPs的形成,并揭示了它们的纳米级尺寸、结晶性质和纯度。PC-AgNPs在410 nm处有紫外-可见吸收峰。TEM分析表明,藻蓝蛋白衍生的AgNPs为球形,平均直径为20.0±4.2 nm。XRD和EDX分析证实了PC-AgNPs的结晶度和纯度。FTIR分析显示藻蓝蛋白官能团参与AgNPs的形成。结果表明,PC-AgNPs对铜绿假单胞菌、鼠伤寒沙门氏菌、金黄色葡萄球菌以及真菌黄曲霉、金色紫青霉和绿色木霉具有较强的抑菌活性。结果表明,与抗菌活性相比,PC-AgNPs的抗真菌活性需要明显更高的浓度。PC-AgNPs还影响了关键抗氧化酶的活性,如超氧化物歧化酶和过氧化氢酶,这些酶在AgNPs诱导的细菌氧化应激防御中起关键作用。此外,PC-AgNPs对A549腺癌细胞表现出显著的浓度依赖性抗肿瘤活性。它们还抑制了关键的血管生成因子,包括VEGF-A和MMP-2,以及炎症相关标志物,如TNF-α和COX-2。结论:本研究为platensis藻蓝蛋白衍生的银纳米粒子提供了全面的物理化学和生物学表征。PC-AgNPs表现出广泛的生物活性,强调了它们在生物医学和生物技术领域创新应用的巨大潜力。
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引用次数: 0
Recombinant production of acidophilic L-arabinose isomerase from Lentilactobacillus parakefiri in Bacillus subtilis. 枯草芽孢杆菌中嗜酸l -阿拉伯糖异构酶的重组生产。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s12934-025-02900-z
Nathanael Weber, Sebastian Götz, Jana Senger, Sabine Lutz-Wahl, Lutz Fischer
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引用次数: 0
Recombinant production of antimicrobial proteins in bacterial expression systems: Escherichia coli vs. lactic acid bacteria. 细菌表达系统中抗菌蛋白的重组生产:大肠杆菌与乳酸菌。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-22 DOI: 10.1186/s12934-025-02904-9
Sergi Travé-Asensio, Oriol Gómez, Jose Vicente Carratalá, Carla Robles, Francesc Fàbregas, Adrià López-Cano, Xavier Rodríguez Rodríguez, Imma Ratera, Anna Arís, Elena Garcia-Fruitós

Background: The development of antimicrobial treatments as alternatives to antibiotics to combat antimicrobial-resistant (AMR) bacteria is a global priority. Antimicrobial peptides and proteins such as Host Defense Peptides (HDPs) and endolysins are one of the alternatives that are being explored. HDPs are small, cationic, and amphiphilic antimicrobial peptides derived from the innate immune system exhibiting a broad-spectrum antimicrobial activity. On the other hand, endolysins are enzymes produced by bacteriophages to hydrolyze the bacterial peptidoglycan layer, offering more specific antimicrobial activity than HDPs. While short peptides can be chemically synthesized, this approach presents several limitations, and recombinant production is also being used. Escherichia coli is the most used bacterial expression system for protein production. Alternative systems based on Generally Recognized as Safe (GRAS) microorganisms such as Lactic Acid Bacteria (LAB) have also been employed. However, so far, no comparative studies have evaluated the production and activity of antimicrobial proteins expressed in E. coli versus LAB and this study aims to address that gap.

Results: To evaluate potential differences in the production of antimicrobial proteins using E. coli and two LAB (Lactococcus lactis and Lactiplantibacillus plantarum) hosts, various proteins were evaluated. These included two HDPs fused to a GFP, two multidomain HDP-based proteins and one endolysin. The results revealed a clear influence of the expression system on the quality of HDP-based protein, including both GFP fusions and multidomain constructs. Protein yield was higher in E. coli and all HDP-based proteins exhibited higher antimicrobial activity when expressed in E. coli compared to L. lactis and L. plantarum. In contrast, endolysin activity was comparable when produced in E. coli and L. lactis.

Conclusions: These results demonstrate that the choice of bacterial expression host significantly affects not only the yield but, more importantly, the antimicrobial activity of HDP-based proteins. For these proteins, the antimicrobial activity was consistently higher when produced in E. coli. In contrast, endolysins exhibited similar characteristics regardless of whether they were expressed in E. coli or in L. lactis.

背景:发展抗微生物治疗作为抗生素的替代品来对抗抗微生物耐药性(AMR)细菌是全球的优先事项。抗菌肽和蛋白质,如宿主防御肽(hdp)和内溶素是正在探索的替代方案之一。hdp是一种小的、阳离子的、两亲性的抗菌肽,来源于先天免疫系统,具有广谱的抗菌活性。另一方面,内溶素是由噬菌体产生的酶,用于水解细菌肽聚糖层,具有比HDPs更特异的抗菌活性。虽然短肽可以化学合成,但这种方法存在一些局限性,重组生产也被使用。大肠杆菌是最常用的蛋白质表达系统。基于公认安全(GRAS)微生物(如乳酸菌(LAB))的替代系统也已被采用。然而,到目前为止,还没有比较研究评估大肠杆菌和乳酸菌中表达的抗菌蛋白的产生和活性,本研究旨在弥补这一空白。结果:为了评估大肠杆菌和两种乳酸菌(乳酸乳球菌和植物乳杆菌)宿主生产抗菌蛋白的潜在差异,对各种蛋白进行了评估。其中包括两个融合到GFP的hdp,两个基于hdp的多结构域蛋白和一个内溶素。结果显示,表达系统对hdp蛋白的质量有明显的影响,包括GFP融合和多结构域构建。与乳杆菌和植物乳杆菌相比,在大肠杆菌中表达的蛋白产量更高,所有基于hdp的蛋白都表现出更高的抗菌活性。相比之下,大肠杆菌和乳酸乳杆菌产生的内溶素活性相当。结论:这些结果表明,细菌表达宿主的选择不仅显著影响hdp蛋白的产量,更重要的是影响其抑菌活性。对于这些蛋白质,在大肠杆菌中产生的抗菌活性始终较高。相比之下,无论是在大肠杆菌还是乳杆菌中表达,内溶素都表现出相似的特征。
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引用次数: 0
A standardized set of pNX vectors for enhanced soluble expression of recombinant proteins in E. coli using small fusion tags. 一套标准化的pNX载体,用于增强重组蛋白在大肠杆菌中使用小融合标签的可溶性表达。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-19 DOI: 10.1186/s12934-025-02903-w
Li-Zhen Luo, Wen-Bin Zhang, Zhe Hu, Ling-Hua Zhang, Jin-Cheng Ma, Xue-Bin Jiang

Background: The production of recombinant proteins in Escherichia coli (E. coli) is often hampered by the formation of inclusion bodies. While fusion tags can enhance solubility, existing systems are hampered by a lack of standardization, with tags scattered across disparate plasmid backbones and inconsistent cloning sites, complicating parallel screening.

Results: To address this, we constructed a standardized series of expression vectors, termed pNX, by incorporating nine small fusion tags (SUMO, LD, ACP, BCCP, GB1, Fh8, SmbP, TolA, and TrxA) into a uniform pET-28b backbone. Each pNX vector features an identical configuration: a T7 promoter, an N-terminal fusion tag, a synthetic linker, a TEV protease cleavage site, and a multiple cloning site (MCS) flanked by dual 6×His tags. We evaluated this system using four model proteins (EcFabG, eGFP, XccXanA2, and XccXanL). Our results showed that specific tags significantly improved both the expression level and solubility of the target proteins without compromising their biological activity. Notably, the lipoyl domain (LD) was identified, to our knowledge for the first time, as an effective solubility enhancer. The standardized MCS enabled rapid, parallel cloning, facilitating the efficient screening of optimal fusion partners.

Conclusions: The pNX vector series provides a versatile and efficient platform for enhancing the soluble expression of challenging recombinant proteins in E. coli, streamlining the empirical identification of ideal fusion tags.

背景:大肠杆菌(E. coli)中重组蛋白的产生经常受到包涵体形成的阻碍。虽然融合标签可以提高溶解度,但现有的系统受到缺乏标准化的阻碍,标签分散在不同的质粒骨干和不一致的克隆位点,使平行筛选复杂化。为了解决这个问题,我们构建了一个标准化的表达载体系列,称为pNX,将9个小融合标签(SUMO, LD, ACP, BCCP, GB1, Fh8, SmbP, TolA和TrxA)整合到统一的pET-28b骨干中。每个pNX载体具有相同的结构:一个T7启动子,一个n端融合标签,一个合成连接子,一个TEV蛋白酶裂解位点,以及一个双6×His标签两侧的多重克隆位点(MCS)。我们使用四种模型蛋白(EcFabG、eGFP、XccXanA2和XccXanL)对该系统进行了评估。我们的研究结果表明,特定的标签显著提高了靶蛋白的表达水平和溶解度,而不影响其生物活性。值得注意的是,据我们所知,脂酰结构域(LD)首次被确定为有效的溶解度增强剂。标准化的MCS实现了快速、并行克隆,促进了最佳融合伙伴的有效筛选。结论:pNX载体系列为提高具有挑战性的重组蛋白在大肠杆菌中的可溶性表达提供了一个多功能和高效的平台,简化了理想融合标签的经验鉴定。
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引用次数: 0
Recombinant L-asparaginase from Stenotrophomonas maltophilia: a promising low-immunogenic anticancer agent. 嗜麦芽寡养单胞菌重组l -天冬酰胺酶:一种有前途的低免疫原性抗癌药物。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-19 DOI: 10.1186/s12934-025-02856-0
Nada A Abdelrazek, Sarra E Saleh, Amal E Ali, Mohammad M Aboulwafa, Marwa M Raafat

L-asparaginase is a crucial enzyme used in chemotherapy regimens for the treatment of acute lymphoblastic leukemia (ALL), its incorporation in the pediatric treatment protocols helped in achieving a high cure rate. However, immunogenic side-effects restrict its application and frequently result in stopping treatment. There is a current need for the identification of novel L-asparaginase with improved properties and lower adverse effects compared to those available in the market. L-asparaginase gene from Stenotrophomonas maltophilia (S. maltophilia), an isolated organism that was mentioned as a novel and excellent source for L- asparaginase, was cloned and expressed using E. coli DH5α and E. coli BL21(DE3). Investigations of different conditions of expression of recombinant L-asparaginase in E. coli BL21(DE3) using Box-Behnken design predicted maximum expression at 37 °C temperature, 250 rpm agitation, 0.83 mM isopropylthio-β-D-galactoside (IPTG) concentration after incubation for 17 h. The optimized expression conditions were validated using L-asparaginase activity assay. The obtained recombinant protein was purified using Ni-NTA spin column. SDS-PAGE demonstrated a single band of 17 KDa apparent molecular weight. The kinetic parameters were determined, and they exhibited a low Km value of 2.94 × 10- 2 M and Vmax of 14.73 IU/ml. Cytotoxicity on various cell lines was tested in relation to marketed E. coli L-asparaginase and exhibited low IC50 of 1.92 IU/ml and 2.03 IU/ml for HEP-G2 and K-562 cell lines, respectively. Additionally, mice treated with recombinant L-asparaginase displayed a significantly lower immunological response (IgG) compared to mice treated with marketed E. coli L-asparaginase (p-value < 0.0001). These findings demonstrate the potentiality of recombinant L-asparaginase for its development as a chemotherapeutic drug.

l -天冬酰胺酶是急性淋巴细胞白血病(ALL)化疗方案中使用的关键酶,将其纳入儿科治疗方案有助于实现高治愈率。然而,免疫原性副作用限制了其应用,并经常导致停止治疗。目前需要鉴定新型l -天冬酰胺酶,与市场上现有的酶相比,它具有更好的性能和更低的不良反应。利用大肠杆菌DH5α和大肠杆菌BL21(DE3)克隆了L-天冬酰胺酶基因,并对L-天冬酰胺酶的优良来源——嗜麦芽寡养单胞菌进行了表达。采用Box-Behnken设计对重组l -天冬酰胺酶在大肠杆菌BL21(DE3)中的不同表达条件进行研究,预测在37°C温度、250 rpm搅拌、0.83 mM异丙硫-β- d -半乳糖苷(IPTG)浓度条件下,培养17 h后,重组l -天冬酰胺酶的最大表达量。重组蛋白采用Ni-NTA自旋柱纯化。SDS-PAGE显示单条带表观分子量为17 KDa。测定了其动力学参数,Km值为2.94 × 10- 2 M, Vmax为14.73 IU/ml。结果表明,HEP-G2和K-562细胞株的IC50分别为1.92 IU/ml和2.03 IU/ml。此外,用重组l -天冬酰胺酶处理的小鼠的免疫应答(IgG)明显低于用市售大肠杆菌l -天冬酰胺酶处理的小鼠(p值)
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引用次数: 0
Retraction Note: Enhancement of novel Endo-polygalacturonase expression in Rhodotorula mucilaginosa PY18 : insights from mutagenesis and molecular docking. 摘要:黏胶红霉菌PY18中新型内切聚半乳糖醛酸酶表达的增强:来自诱变和分子对接的见解。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-18 DOI: 10.1186/s12934-025-02885-9
Nagwa M Abd El-Aziz, Maysa E Moharam, Nora N El-Gamal, Bigad E Khalil
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引用次数: 0
Exploring black soil microbiota for industrial enzymes: cellulase and xylanase characterization from Bacillus subtilis SSMK413. 探索黑土微生物群的工业酶:枯草芽孢杆菌SSMK413纤维素酶和木聚糖酶的特性。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-18 DOI: 10.1186/s12934-025-02898-4
Shweta Shah, Bairagi C Mallick, Bhagwati Devi, Manoj Kumar
{"title":"Exploring black soil microbiota for industrial enzymes: cellulase and xylanase characterization from Bacillus subtilis SSMK413.","authors":"Shweta Shah, Bairagi C Mallick, Bhagwati Devi, Manoj Kumar","doi":"10.1186/s12934-025-02898-4","DOIUrl":"10.1186/s12934-025-02898-4","url":null,"abstract":"","PeriodicalId":18582,"journal":{"name":"Microbial Cell Factories","volume":" ","pages":"15"},"PeriodicalIF":4.9,"publicationDate":"2025-12-18","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12821954/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145781531","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Engineered Clostridium butyricum: a promising application of synthetic biology in comprehensive health. 工程丁酸梭菌:合成生物学在全面健康领域的应用前景。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-17 DOI: 10.1186/s12934-025-02901-y
Kaiyi Li, Yao Kong, Tingtao Chen
{"title":"Engineered Clostridium butyricum: a promising application of synthetic biology in comprehensive health.","authors":"Kaiyi Li, Yao Kong, Tingtao Chen","doi":"10.1186/s12934-025-02901-y","DOIUrl":"10.1186/s12934-025-02901-y","url":null,"abstract":"","PeriodicalId":18582,"journal":{"name":"Microbial Cell Factories","volume":" ","pages":"14"},"PeriodicalIF":4.9,"publicationDate":"2025-12-17","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC12822153/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"145775010","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
1,3-propanediol production by Klebsiella pneumoniae ∆dhaM∆ptsG∆glpK using glucose and glycerol as co-substrates. 以葡萄糖和甘油为共底物,肺炎克雷伯菌∆dhaM∆ptsG∆glpK生产1,3-丙二醇。
IF 4.9 2区 生物学 Q1 BIOTECHNOLOGY & APPLIED MICROBIOLOGY Pub Date : 2025-12-15 DOI: 10.1186/s12934-025-02896-6
Shaoqi Sun, Weiyan Jiang, Yaoyu Cai, Wenqi Wang, Xinjie Bian, Taiyu Liu, Marina Tišma, Dexin Wang, Jian Hao
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引用次数: 0
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Microbial Cell Factories
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