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Seroreversion to Chlamydia trachomatis Pgp3 antigen among children in a hyperendemic region of Amhara, Ethiopia. 埃塞俄比亚阿姆哈拉高流行区幼儿沙眼衣原体Pgp3抗原的血清逆转。
Pub Date : 2023-12-21 DOI: 10.1101/2023.02.04.23285360
Christine Tedijanto, Solomon Aragie, Sarah Gwyn, Dionna M Wittberg, Taye Zeru, Zerihun Tadesse, Ambahun Chernet, Isabel J B Thompson, Scott D Nash, Thomas M Lietman, Diana L Martin, Jeremy D Keenan, Benjamin F Arnold

Monitoring trachoma transmission with antibody data requires characterization of decay in IgG to Chlamydia trachomatis antigens. In a three-year longitudinal cohort in a high transmission setting, we estimated a median IgG half-life of 3 years and a seroreversion rate of 2.5 (95% CI: 1.6, 3.5) per 100 person-years.

用抗体数据监测沙眼传播需要表征沙眼衣原体抗原IgG的衰变。在一个高传播环境中的三年纵向队列中,我们估计IgG的中位半衰期为3年,血清逆转率为每100人年2.5(95%CI:1.6,3.8)。
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引用次数: 0
Timing dependent synergies between motor cortex and posterior spinal stimulation in humans. 人类运动皮层和脊髓后部刺激之间的时间依赖性协同作用。
Pub Date : 2023-12-21 DOI: 10.1101/2023.08.18.23294259
James R McIntosh, Evan F Joiner, Jacob L Goldberg, Phoebe Greenwald, Lynda M Murray, Earl Thuet, Oleg Modik, Evgeny Shelkov, Joseph M Lombardi, Zeeshan M Sardar, Ronald A Lehman, Andrew K Chan, K Daniel Riew, Noam Y Harel, Michael S Virk, Christopher Mandigo, Jason B Carmel

Volitional movement requires descending input from motor cortex and sensory feedback through the spinal cord. We previously developed a paired brain and spinal electrical stimulation approach in rats that relies on convergence of the descending motor and spinal sensory stimuli in the cervical cord. This approach strengthened sensorimotor circuits and improved volitional movement through associative plasticity. In humans it is not known whether dorsal epidural SCS targeted at the sensorimotor interface or anterior epidural SCS targeted within the motor system is effective at facilitating brain evoked responses. In 59 individuals undergoing elective cervical spine decompression surgery, the motor cortex was stimulated with scalp electrodes and the spinal cord with epidural electrodes while muscle responses were recorded in arm and leg muscles. Spinal electrodes were placed either posteriorly or anteriorly, and the interval between cortex and spinal cord stimulation was varied. Pairing stimulation between the motor cortex and spinal sensory (posterior) but not spinal motor (anterior) stimulation produced motor evoked potentials that were over five times larger than brain stimulation alone. This strong augmentation occurred only when descending motor and spinal afferent stimuli were timed to converge in the spinal cord. Paired stimulation also increased the selectivity of muscle responses relative to unpaired brain or spinal cord stimulation. Finally, paired stimulation effects were present regardless of the severity of myelopathy as measured by clinical signs or spinal cord imaging. The large effect size of this paired stimulation makes it a promising candidate for therapeutic neuromodulation.

电刺激大脑和脊髓可以加强感觉运动回路,并通过联想可塑性改善运动。目前的成对刺激模式仅针对皮层中的运动系统或感觉运动连接。我们在大鼠身上开发了一种针对颈脊髓感觉和运动连接的配对刺激方法。由于配对刺激所需的回路在物种之间是保守的,我们假设人类对运动皮层和颈后脊髓的配对刺激会产生协同的肌肉反应,但只有在刺激时机合适的情况下。在59名接受临床指示的颈椎手术的患者中,用头皮电极刺激运动皮层,用硬膜外电极刺激脊髓,同时记录手臂和腿部肌肉的肌肉反应。脊髓电极放置在脊髓后部或前部,皮层和脊髓刺激之间的间隔是不同的。运动皮层和脊髓后部(而不是前部)之间的配对刺激产生的运动诱发电位是单独大脑刺激的五倍多。当下行运动和脊髓传入刺激定时汇聚在颈脊髓时,就会出现这种强烈的增强。相对于未配对的大脑或脊髓刺激,配对刺激还增加了肌肉反应的选择性。最后,通过临床体征或脊髓成像测量,无论脊髓病的严重程度如何,都会出现配对刺激效应。这种配对刺激的大效应大小使其成为治疗神经调控的有前途的候选。
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引用次数: 0
Outpatient COVID-19 convalescent plasma recipient antibody thresholds correlated to reduced hospitalizations within a randomized trial. 新冠肺炎康复期血浆保护与门诊住院人数减少的抗体相关性。
Pub Date : 2023-12-15 DOI: 10.1101/2023.04.13.23288353
Han-Sol Park, Anna Yin, Caelan Barranta, John S Lee, Christopher A Caputo, Jaiprasath Sachithanandham, Maggie Li, Steve Yoon, Ioannis Sitaras, Anne Jedlicka, Yolanda Eby, Malathi Ram, Reinaldo E Fernandez, Owen R Baker, Aarthi G Shenoy, Giselle S Mosnaim, Yuriko Fukuta, Bela Patel, Sonya L Heath, Adam C Levine, Barry R Meisenberg, Emily S Spivak, Shweta Anjan, Moises A Huaman, Janis E Blair, Judith S Currier, James H Paxton, Jonathan M Gerber, Joann R Petrini, Patrick B Broderick, William Rausch, Marie Elena Cordisco, Jean Hammel, Benjamin Greenblatt, Valerie C Cluzet, Daniel Cruser, Kevin Oei, Matthew Abinante, Laura L Hammitt, Catherine G Sutcliffe, Donald N Forthal, Martin S Zand, Edward R Cachay, Jay S Raval, Seble G Kassaye, Christi E Marshall, Anusha Yarava, Karen Lane, Nichol A McBee, Amy L Gawad, Nicky Karlen, Atika Singh, Daniel E Ford, Douglas A Jabs, Lawrence J Appel, David M Shade, Bryan Lau, Stephan Ehrhardt, Sheriza N Baksh, Janna R Shapiro, Jiangda Ou, Yu Bin Na, Maria D Knoll, Elysse Ornelas-Gatdula, Netzahualcoyotl Arroyo-Curras, Thomas J Gniadek, Patrizio Caturegli, Jinke Wu, Nelson Ndahiro, Michael J Betenbaugh, Alyssa Ziman, Daniel F Hanley, Arturo Casadevall, Shmuel Shoham, Evan M Bloch, Kelly A Gebo, Aaron A R Tobian, Oliver Laeyendecker, Andrew Pekosz, Sabra L Klein, David J Sullivan

Background: The COVID-19 convalescent plasma (CCP) viral specific antibody levels that translate into recipient post-transfusion antibody levels sufficient to prevent disease progression is not defined.

Methods: This secondary analysis correlated donor and recipient antibody levels to hospitalization risk among unvaccinated, seronegative CCP recipients within the outpatient, double blind, randomized clinical trial that compared CCP to control plasma. The majority of COVID-19 CCP arm hospitalizations (15/17, 88%) occurred in this unvaccinated, seronegative subgroup. A functional cutoff to delineate recipient high versus low post-transfusion antibody levels was established by two methods: 1) analyzing virus neutralization-equivalent anti-S-RBD IgG responses in donors or 2) receiver operating characteristic (ROC) analysis.

Results: SARS-CoV-2 anti-S-RBD IgG antibody was diluted by a factor of 21.3 into post-transfusion seronegative recipients from matched donor units. Viral specific antibody delivered approximated 1.2 mg. The high antibody recipients transfused early (symptom onset within 5 days) had no hospitalizations. A CCP recipient analysis for antibody thresholds correlated to reduced hospitalizations found a significant association with Fisher's exact test between early and high antibodies versus all other CCP recipients (or control plasma) with antibody cutoffs established by both methods-donor virus neutralization-based cutoff: (0/85; 0% versus 15/276; 5.6%) p=0.03 or ROC based cutoff: (0/94; 0% versus 15/267; 5.4%) p=0.01.

Conclusion: In unvaccinated, seronegative CCP recipients, early transfusion of plasma units corresponding to the upper 30% of all study donors reduced outpatient hospitalizations. These high antibody level plasma units, given early, should be reserved for therapeutic use.Trial registration: NCT04373460.

Funding: Defense Health Agency and others.

与降低住院风险相关的严重急性呼吸系统综合征冠状病毒2型抗体水平仍不明确。我们的门诊新冠肺炎恢复期血浆(CCP)安慰剂对照试验观察到,从匹配的供体单位到血清阴性的受体,SARS-CoV-2抗体水平下降了22倍。未接种疫苗的受试者按a)早期或晚期输血(症状出现后≤5天或>5天)和b)输血后严重急性呼吸系统综合征冠状病毒2型抗体水平高或低(<或≥几何平均值)进行联合分层。与所有其他CCP受试者-17/370(4.6%;Fisher精确p=0.03)和所有对照血浆受试者-35/461(7.6%;Fisher确切p=0.001)相比,输血后抗体水平高的早期治疗降低了住院风险0/102(0%)。类似的供体上/下抗体水平和早期-晚期输血分层分析表明,住院风险显著降低。无论住院结果如何,CCP和对照受试者的输血前鼻腔病毒载量相似。治疗性CCP应包括30%以上的供体抗体水平,以便为免疫功能低下和免疫功能低下的门诊患者提供有效的门诊使用。
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引用次数: 0
POTENTIATION OF CORTICO-SPINAL OUTPUT VIA TARGETED ELECTRICAL STIMULATION OF THE MOTOR THALAMUS. 运动丘脑的定向脑深部刺激促进了皮质脊髓损伤后的自主运动控制。
Pub Date : 2023-12-12 DOI: 10.1101/2023.03.08.23286720
Jonathan C Ho, Erinn M Grigsby, Arianna Damiani, Lucy Liang, Josep-Maria Balaguer, Sridula Kallakuri, Jessica Barrios-Martinez, Vahagn Karapetyan, Daryl Fields, Peter C Gerszten, T Kevin Hitchens, Theodora Constantine, Gregory M Adams, Donald J Crammond, Marco Capogrosso, Jorge A Gonzalez-Martinez, Elvira Pirondini

Cerebral white matter lesions prevent cortico-spinal descending inputs from effectively activating spinal motoneurons, leading to loss of motor control. However, in most cases, the damage to cortico-spinal axons is incomplete offering a potential target for new therapies aimed at improving volitional muscle activation. Here we hypothesized that, by engaging direct excitatory connections to cortico-spinal motoneurons, stimulation of the motor thalamus could facilitate activation of surviving cortico-spinal fibers thereby potentiating motor output. To test this hypothesis, we identified optimal thalamic targets and stimulation parameters that enhanced upper-limb motor evoked potentials and grip forces in anesthetized monkeys. This potentiation persisted after white matter lesions. We replicated these results in humans during intra-operative testing. We then designed a stimulation protocol that immediately improved voluntary grip force control in a patient with a chronic white matter lesion. Our results show that electrical stimulation targeting surviving neural pathways can improve motor control after white matter lesions.

脑白质束损伤阻止皮质脊髓下行输入有效激活脊髓运动神经元,导致无法治疗的肌肉麻痹。然而,在大多数情况下,皮质脊髓轴突的损伤是不完整的,神经技术可以增强多余的连接,以恢复运动功能。在这里,我们假设,通过与皮质脊髓运动神经元进行直接兴奋性连接,运动丘脑的脑深部刺激(DBS)可以促进备用皮质脊髓纤维的激活,改善偏瘫肢体的运动。我们首先在猴子身上确定了最佳刺激目标和参数,这些目标和参数可以增强手臂、手和面部肌肉的运动诱发电位以及握力。这种增强作用在脑白质损伤后持续存在。然后,我们通过识别相应的最佳丘脑靶点(VIM/VOP核)将这些结果转化为人类受试者,并在猴子身上复制获得的结果。最后,我们设计了一个DBS方案,该方案立即改善了慢性创伤性脑损伤患者的自主握力控制。我们的研究结果表明,运动丘脑的靶向DBS可能成为治疗运动麻痹的有效方法。
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引用次数: 0
A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in AFF3 as a significant cause of intellectual disability. 在AFF3中GCC重复扩增是导致智力残疾的重要原因。
Pub Date : 2023-12-12 DOI: 10.1101/2023.05.03.23289461
Bharati Jadhav, Paras Garg, Joke J F A van Vugt, Kristina Ibanez, Delia Gagliardi, William Lee, Mariya Shadrina, Tom Mokveld, Egor Dolzhenko, Alejandro Martin-Trujillo, Scott L Gies, Clarissa Rocca, Mafalda Barbosa, Miten Jain, Nayana Lahiri, Katherine Lachlan, Henry Houlden, Benedict Paten, Jan Veldink, Arianna Tucci, Andrew J Sharp

GC-rich tandem repeat expansions (TREs) are often associated with DNA methylation, gene silencing and folate-sensitive fragile sites and underlie several congenital and late-onset disorders. Through a combination of DNA methylation profiling and tandem repeat genotyping, we identified 24 methylated TREs and investigated their effects on human traits using PheWAS in 168,641 individuals from the UK Biobank, identifying 156 significant TRE:trait associations involving 17 different TREs. Of these, a GCC expansion in the promoter of AFF3 was linked with a 2.4-fold reduced probability of completing secondary education, an effect size comparable to several recurrent pathogenic microdeletions. In a cohort of 6,371 probands with neurodevelopmental problems of suspected genetic etiology, we observed a significant enrichment of AFF3 expansions compared to controls. With a population prevalence that is at least 5-fold higher than the TRE that causes fragile X syndrome, AFF3 expansions represent a significant cause of neurodevelopmental delay.

富含gc的串联重复序列扩增(TREs)通常与DNA甲基化、基因沉默和叶酸敏感脆弱位点相关,是几种先天性和晚发性疾病的基础。通过DNA甲基化分析和串联重复基因分型的结合,我们鉴定了24个甲基化的TREs,并使用PheWAS研究了它们对来自UK Biobank的168,641个个体的人类性状的影响,鉴定了156个显著的TREs:性状关联,涉及17种不同的TREs。其中,AFF3启动子中的GCC扩增与完成中等教育的概率降低2.4倍有关,其效应大小与几种复发性致病性微缺失相当。在一组6371名疑似遗传原因的神经发育问题先证中,我们观察到与对照组相比,AFF3扩增显著富集。与引起脆性X综合征的TREs相比,AFF3的人群患病率至少高出5倍,AFF3扩增是人类神经发育迟缓的一个重要原因。
{"title":"A phenome-wide association study of methylated GC-rich repeats identifies a GCC repeat expansion in <i>AFF3</i> as a significant cause of intellectual disability.","authors":"Bharati Jadhav, Paras Garg, Joke J F A van Vugt, Kristina Ibanez, Delia Gagliardi, William Lee, Mariya Shadrina, Tom Mokveld, Egor Dolzhenko, Alejandro Martin-Trujillo, Scott L Gies, Clarissa Rocca, Mafalda Barbosa, Miten Jain, Nayana Lahiri, Katherine Lachlan, Henry Houlden, Benedict Paten, Jan Veldink, Arianna Tucci, Andrew J Sharp","doi":"10.1101/2023.05.03.23289461","DOIUrl":"10.1101/2023.05.03.23289461","url":null,"abstract":"<p><p>GC-rich tandem repeat expansions (TREs) are often associated with DNA methylation, gene silencing and folate-sensitive fragile sites and underlie several congenital and late-onset disorders. Through a combination of DNA methylation profiling and tandem repeat genotyping, we identified 24 methylated TREs and investigated their effects on human traits using PheWAS in 168,641 individuals from the UK Biobank, identifying 156 significant TRE:trait associations involving 17 different TREs. Of these, a GCC expansion in the promoter of <i>AFF3</i> was linked with a 2.4-fold reduced probability of completing secondary education, an effect size comparable to several recurrent pathogenic microdeletions. In a cohort of 6,371 probands with neurodevelopmental problems of suspected genetic etiology, we observed a significant enrichment of <i>AFF3</i> expansions compared to controls. With a population prevalence that is at least 5-fold higher than the TRE that causes fragile X syndrome, <i>AFF3</i> expansions represent a significant cause of neurodevelopmental delay.</p>","PeriodicalId":18659,"journal":{"name":"medRxiv : the preprint server for health sciences","volume":" ","pages":""},"PeriodicalIF":0.0,"publicationDate":"2023-12-12","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10187445/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9490615","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Corpus callosum abnormalities at term-equivalent age are associated with language development at two years corrected age in infants born very preterm. 极早产婴儿在足月相当年龄时的胼胝体异常与两岁校正年龄时的语言发育有关。
Pub Date : 2023-12-11 DOI: 10.1101/2023.09.20.23295848
Katsuaki Kojima, Julia E Kline, Mekibib Altaye, Beth M Kline-Fath, Nehal A Parikh

We studied the impact of microstructural abnormalities in the corpus callosum on language development in 348 infants born very prematurely. We discovered that the fractional anisotropy of the corpus callosum anterior midbody was a significant predictor of standardized language scores at two years, independent of clinical and social risk factors.

我们研究了348名早产婴儿胼胝体微观结构异常对语言发展的影响。我们发现,胼胝体前中体的各向异性分数是两年标准化语言评分的重要预测因素,与临床和社会风险因素无关。
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引用次数: 0
Imprecision nutrition? Duplicate meals result in unreliable individual glycemic responses measured by continuous glucose monitors across four dietary patterns in adults without diabetes. 营养不良?在没有糖尿病的成年人中,重复的饮食会导致不可靠的个体血糖反应,这是通过连续血糖监测仪在三种饮食模式下测量的。
Pub Date : 2023-12-11 DOI: 10.1101/2023.06.14.23291406
Aaron Hengist, Jude Anthony Ong, Katherine McNeel, Juen Guo, Kevin D Hall

Background: Continuous glucose monitors (CGMs) are being used to characterize postprandial glycemic responses and thereby provide personalized dietary advice to minimize glycemic excursions. However, the efficacy of such advice depends on reliable CGM responses.

Objective: To explore within-subject variability of CGM responses to duplicate meals in an inpatient setting.

Methods: CGM data were collected in two controlled feeding studies (NCT03407053 and NCT03878108) in 30 participants without diabetes capturing 1056 meal responses in duplicate ~1 week apart from four dietary patterns. One study used two different CGMs (Abbott Freestyle Libre Pro and Dexcom G4 Platinum) whereas the other study used only Dexcom. We calculated the incremental area under the curve (iAUC) for each 2-h post-meal period and compared within-subject iAUCs using the same CGM for the duplicate meals using linear correlations, intra-class correlation coefficients (ICC), Bland-Altman analyses, and compared individual variability of glycemic responses to duplicate meals versus different meals using standard deviations (SDs).

Results: There were weak to moderate positive linear correlations between within- subject iAUCs for duplicate meals (Abbott r=0.47, p<0.0001, Dexcom r=0.43, p<0.0001), with low within-participant reliability indicated by ICC (Abbott 0.31, Dexcom 0.14). Bland-Altman analyses indicated wide limits of agreement (Abbott -31.3 to 31.5 mg/dL, Dexcom -30.8 to 30.4 mg/dL) but no significant bias of mean iAUCs for duplicate meals (Abbott 0.1 mg/dL, Dexcom -0.2 mg/dL). Individual variability of glycemic responses to duplicate meals was similar to that of different meals evaluated each diet week for both Abbott (SDduplicate = 10.7 mg/dL , SDweek 1 =12.4 mg/dL, SDweek 2 =11.6 mg/dL, p=0.38) and Dexcom (SDduplicate = 11.1 mg/dL, SDweek 1 = 11.5 mg/dL, SDweek 2 =11.9 mg/dL, p=0.60).

Conclusions: Individual postprandial CGM responses to duplicate meals were unreliable in adults without diabetes. Personalized diet advice based on CGM measurements in adults without diabetes requires more reliable methods involving aggregated repeated measurements.

背景:连续血糖监测仪(CGM)被用于表征餐后血糖反应,从而提供个性化的饮食建议,以最大限度地减少血糖波动。然而,这种建议的有效性取决于CGM的可靠反应。目的:探讨住院患者对重复膳食CGM反应的受试者内变异性。方法:在两项对照喂养研究(NCT03407053和NCT03878108)中收集30名无糖尿病参与者的CGM数据,在两次~1周内,除三种饮食模式外,共捕获948份膳食反应。一项研究使用了两种不同的CGM(Abbott Freestyle Libre Pro和Dexcom G4 Platinum),而另一项研究仅使用Dexcom。我们计算了每个餐后2小时的曲线下增量面积(iAUC),并使用线性相关性、类内相关系数(ICC)、Bland-Altman分析、,并使用标准差(SD)比较了重复膳食与不同膳食的血糖反应的个体变异性(SD重复=11.8 mg/dL,SD第1周=12.2 mg/dL;SD第2周=12.4 mg/dL。p=0.80)。结论:在没有糖尿病的成年人中,个体餐后CGM对重复膳食的反应是不可靠的。基于无糖尿病成年人CGM测量的个性化饮食建议需要更可靠的方法,包括汇总重复测量。
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引用次数: 0
Meta-analysis of CYP2C19 and CYP2D6 metabolic activity on antidepressant response from 13 clinical studies using genotype imputation. 13项临床研究中CYP2C19和CYP2D6代谢活性对抗抑郁反应的Meta分析。
Pub Date : 2023-12-11 DOI: 10.1101/2023.06.26.23291890
Danyang Li, Oliver Pain, Chiara Fabbri, Win Lee Edwin Wong, Chris Wai Hang Lo, Stephan Ripke, Annamaria Cattaneo, Daniel Souery, Mojca Z Dernovsek, Neven Henigsberg, Joanna Hauser, Glyn Lewis, Ole Mors, Nader Perroud, Marcella Rietschel, Rudolf Uher, Wolfgang Maier, Bernhard T Baune, Joanna M Biernacka, Guido Bondolfi, Katharina Domschke, Masaki Kato, Yu-Li Liu, Alessandro Serretti, Shih-Jen Tsai, Richard Weinshilboum, Andrew M McIntosh, Cathryn M Lewis

Cytochrome P450 enzymes including CYP2C19 and CYP2D6 are important for antidepressant metabolism and polymorphisms of these genes have been determined to predict metabolite levels. Nonetheless, more evidence is needed to understand the impact of genetic variations on antidepressant response. In this study, individual clinical and genetic data from 13 studies of European and East Asian ancestry populations were collected. The antidepressant response was clinically assessed as remission and percentage improvement. Imputed genotype was used to translate genetic polymorphisms to metabolic phenotypes (poor, intermediate, normal, and rapid+ultrarapid) of CYP2C19 and CYP2D6. The association of CYP2C19 and CYP2D6 metabolic phenotypes with treatment response was examined using normal metabolizers as the reference. Among 5843 depression patients, a higher remission rate was found in CYP2C19 poor metabolizers compared to normal metabolizers at nominal significance but did not survive after multiple testing correction (OR=1.46, 95% CI [1.03, 2.06], p=0.033, heterogeneity I2=0%, subgroup difference p=0.72). No metabolic phenotype was associated with percentage improvement from baseline. After stratifying by antidepressants primarily metabolized by CYP2C19 and CYP2D6, no association was found between metabolic phenotypes and antidepressant response. Metabolic phenotypes showed differences in frequency, but not effect, between European- and East Asian-ancestry studies. In conclusion, metabolic phenotypes imputed from genetic variants using genotype were not associated with antidepressant response. CYP2C19 poor metabolizers could potentially contribute to antidepressant efficacy with more evidence needed. CYP2D6 structural variants cannot be imputed from genotype data, limiting inference of pharmacogenetic effects. Sequencing and targeted pharmacogenetic testing, alongside information on side effects, antidepressant dosage, depression measures, and diverse ancestry studies, would more fully capture the influence of metabolic phenotypes.

包括CYP2C19和CYP2D6在内的细胞色素P450酶对抗抑郁药代谢很重要,这些基因的多态性已被确定可预测代谢产物水平。尽管如此,还需要更多的证据来了解基因变异对抗抑郁反应的影响。在这项研究中,收集了来自欧洲和东亚血统人群的13项临床研究的个人数据。抗抑郁反应被临床评估为缓解和百分比改善。使用推测基因型将遗传多态性转化为CYP2C19和CYP2D6的四种代谢表型(较差、中等、正常和超快)。CYP2C19和CYP2D6代谢表型与治疗反应的相关性使用正常代谢者作为参考进行检查。在5843名抑郁症患者中,与正常代谢者相比,CYP2C19不良代谢者的缓解率更高,具有标称意义(OR=1.46,95%CI[1.03,2.06],p=0.033),但在多次测试校正后未存活。没有代谢表型与基线改善百分比相关。通过主要由CYP2C19和CYP2D6代谢的抗抑郁药进行分层后,未发现代谢表型与抗抑郁反应之间的关联。代谢表型在欧洲和东亚的研究中显示出频率上的差异,但没有影响。总之,遗传变异引起的代谢表型与抗抑郁反应无关。CYP2C19代谢不良可能有助于抗抑郁疗效,需要更多的证据。包括副作用、抗抑郁药剂量以及来自不同祖先的人群在内的信息可以用来充分捕捉代谢表型的影响并提高效果评估的能力。
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引用次数: 0
Early underdetected dissemination across countries followed by extensive local transmission propelled the 2022 mpox epidemic. 早期在各国传播不足,随后又出现广泛的本地传播,推动了2022年猴痘疫情。
Pub Date : 2023-12-07 DOI: 10.1101/2023.07.27.23293266
Miguel I Paredes, Nashwa Ahmed, Marlin Figgins, Vittoria Colizza, Philippe Lemey, John T McCrone, Nicola Müller, Cécile Tran-Kiem, Trevor Bedford

The World Health Organization declared mpox a public health emergency of international concern in July 2022. To investigate global mpox transmission and population-level changes associated with controlling spread, we built phylogeographic and phylodynamic models to analyze MPXV genomes from five global regions together with air traffic and epidemiological data. Our models reveal community transmission prior to detection, changes in case-reporting throughout the epidemic, and a large degree of transmission heterogeneity. We find that viral introductions played a limited role in prolonging spread after initial dissemination, suggesting that travel bans would have had only a minor impact. We find that mpox transmission in North America began declining before more than 10% of high-risk individuals in the USA had vaccine-induced immunity. Our findings highlight the importance of broader routine specimen screening surveillance for emerging infectious diseases and of joint integration of genomic and epidemiological information for early outbreak control.

世界卫生组织于2022年7月宣布猴痘为国际关注的突发公共卫生事件。为了调查全球猴痘传播并量化人群层面干预措施对控制传播的影响,我们建立了系统地理学和系统动力学模型,分析了全球五个地区的MPXV基因组以及空中交通和流行病学数据。我们的模型揭示了检测前的社区传播、整个疫情期间病例报告的变化以及很大程度的传播异质性。我们发现,病毒引入在最初传播后延长传播的作用有限,这表明旅行禁令的影响很小。我们发现,在美国超过10%的高危人群获得疫苗诱导的免疫力之前,猴痘在北美的传播就开始下降。鉴于病例在检测后迅速下降,很可能是由于行为改变,我们的发现强调了对新发传染病进行更广泛的常规标本筛查监测的重要性。
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引用次数: 0
Accuracy of digital chest x-ray analysis with artificial intelligence software as a triage and screening tool in hospitalized patients being evaluated for tuberculosis in Lima, Peru. 在秘鲁利马,使用人工智能软件作为分诊和筛查工具对住院结核病患者进行数字胸部x光分析的准确性。
Pub Date : 2023-12-07 DOI: 10.1101/2023.05.17.23290110
Amanda Biewer, Christine Tzelios, Karen Tintaya, Betsabe Roman, Shelley Hurwitz, Courtney M Yuen, Carole D Mitnick, Edward Nardell, Leonid Lecca, Dylan B Tierney, Ruvandhi R Nathavitharana

Introduction: Tuberculosis (TB) transmission in healthcare facilities is common in high-incidence countries. Yet, the optimal approach for identifying inpatients who may have TB is unclear. We evaluated the diagnostic accuracy of qXR (Qure.ai, India) computer-aided detection (CAD) software versions 3.0 and 4.0 (v3 and v4) as a triage and screening tool within the FAST (Find cases Actively, Separate safely, and Treat effectively) transmission control strategy.

Methods: We prospectively enrolled two cohorts of patients admitted to a tertiary hospital in Lima, Peru: one group had cough or TB risk factors (triage) and the other did not report cough or TB risk factors (screening). We evaluated the sensitivity and specificity of qXR for the diagnosis of pulmonary TB using culture and Xpert as primary and secondary reference standards, including stratified analyses based on risk factors.

Results: In the triage cohort (n=387), qXR v4 sensitivity was 0.91 (59/65, 95% CI 0.81-0.97) and specificity was 0.32 (103/322, 95% CI 0.27-0.37) using culture as reference standard. There was no difference in the area under the receiver-operating-characteristic curve (AUC) between qXR v3 and qXR v4 with either a culture or Xpert reference standard. In the screening cohort (n=191), only one patient had a positive Xpert result, but specificity in this cohort was high (>90%). A high prevalence of radiographic lung abnormalities, most notably opacities (81%), consolidation (62%), or nodules (58%), was detected by qXR on digital CXR images from the triage cohort.

Conclusions: qXR had high sensitivity but low specificity as a triage in hospitalized patients with cough or TB risk factors. Screening patients without cough or risk factors in this setting had a low diagnostic yield. These findings further support the need for population and setting-specific thresholds for CAD programs.

简介:结核病在医疗机构的传播在高发病率国家很常见。然而,确定可能患有结核病的住院患者的最佳方法尚不清楚。我们评估了qXR(Qure.ai,印度)计算机辅助检测(CAD)软件版本3和4(v3和v4)作为FAST(主动发现病例、安全分离和有效治疗)传播控制策略中的分诊和筛查工具的诊断准确性。方法:我们前瞻性地招募了两组入住秘鲁利马三级医院的患者:一组有咳嗽或结核病危险因素(分诊),另一组没有报告咳嗽或结核病风险因素(筛查)。我们使用培养和Xpert作为主要和次要参考标准,评估了qXR诊断肺结核的敏感性和特异性,包括基于风险因素的分层分析。结果:在分诊队列(n=387)中,使用培养物作为参考标准,qXRv4的敏感性为0.95(62/65,95%CI 0.87-0.99),特异性为0.36(116/322,95%CI 0.31-0.42)。在培养物或Xpert参考标准的qXRv3和qxRv4之间,受试者工作特性曲线下面积(AUC)没有差异。在筛查队列(n=191)中,只有一名患者的Xpert结果呈阳性,但该队列的特异性很高(>90%)。qXR敏感性按性别、年龄、既往结核病、HIV和症状分层没有差异。结论:qXR在有咳嗽或结核病危险因素的住院患者中具有高灵敏度,但特异性低。在这种情况下筛查没有咳嗽的患者的诊断率较低。这些发现进一步支持了对CAD程序的总体需求和设置特定阈值的需求。
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medRxiv : the preprint server for health sciences
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