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DNA damage in peripheral blood lymphocytes of severely ill COVID-19 patients in relation to inflammatory markers and parameters of hemostasis. 重症COVID-19患者外周血淋巴细胞DNA损伤与炎症标志物和止血参数的关系
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-10-26 DOI: 10.1093/mutage/geac011
Olgica Mihaljevic,Snezana Zivancevic-Simonovic,Vojislav Cupurdija,Milos Marinkovic,Jovana Tubic Vukajlovic,Aleksandra Markovic,Marijana Stanojevic-Pirkovic,Olivera Milosevic-Djordjevic
Bearing in the mind that a variety of agents can contribute to genome instability, including viral infections, the aim of this study was to analyze DNA damage in hospitalized COVID-19 patients and its relationship with certain laboratory parameters. The potential impact of applied therapy and chest X-rays on DNA damage was also estimated. The study population included 24 severely COVID-19 patients and 15 healthy control subjects. The level of DNA damage was measured as genetic damage index (GDI) by comet assay. The standard laboratory methods and certified enzymatic reagents for the appropriate autoanalyzers were performed for the determination of the biochemical and hematological parameters. COVID-19 patients had significantly higher level of DNA damage compared with control subjects. The absolute number of neutrophil leukocytes was statistically higher, while the absolute number of lymphocytes was statistically lower in COVID-19 patients than in healthy controls. The analysis of the relationship between DNA damage and laboratory parameters indicated that GDI was positively correlated with interleukin 6 (IL-6) concentration and negatively with platelet count in COVID-19 patients. The level of DNA damage was slightly higher in female patients, in whom it was demonstrated a positive correlation of GDI with C-reactive protein (CRP) and procalcitonin. Likewise, there was a negative relationship of GDI and platelet count, and positive relationship of GDI and activated partial thromboplastin time (aPTT) in female population. The applied therapy (antibiotics, corticosteroid, anticoagulant, and antiviral therapy) as well as chest X rays has been shown to have genotoxic potential. The level of DNA damage significantly corresponds to the inflammatory markers and parameters of hemostasis in COVID-19 patients. In conclusion, inflammation, smoking habit, applied therapy, and chest X rays contribute to a higher level of DNA damage in COVID-19 patients.
考虑到多种因素可导致基因组不稳定,包括病毒感染,本研究的目的是分析住院COVID-19患者的DNA损伤及其与某些实验室参数的关系。应用治疗和胸部x光对DNA损伤的潜在影响也进行了估计。研究人群包括24例COVID-19重症患者和15例健康对照。以遗传损伤指数(GDI)测定DNA损伤水平。采用标准实验室方法和经认证的酶试剂进行生化和血液学参数的测定。新冠肺炎患者的DNA损伤水平明显高于对照组。与健康对照组相比,新冠肺炎患者中性粒细胞的绝对数量有统计学差异,而淋巴细胞的绝对数量有统计学差异。分析DNA损伤与实验室参数的关系发现,GDI与COVID-19患者白细胞介素6 (IL-6)浓度呈正相关,与血小板计数呈负相关。女性患者的DNA损伤水平略高,GDI与c反应蛋白(CRP)和降钙素原呈正相关。女性人群GDI与血小板计数呈负相关,GDI与活化的部分凝血活素时间(aPTT)呈正相关。应用治疗(抗生素、皮质类固醇、抗凝血剂和抗病毒治疗)以及胸部X射线已被证明具有遗传毒性。DNA损伤水平与COVID-19患者的炎症标志物和止血参数显著对应。总之,炎症、吸烟习惯、应用治疗和胸部X光检查导致COVID-19患者的DNA损伤水平更高。
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引用次数: 4
Optimizing machine-learning models for mutagenicity prediction through better feature selection. 优化机器学习模型,通过更好的特征选择来预测突变性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-10-26 DOI: 10.1093/mutage/geac010
Nicolas K Shinada,Naoki Koyama,Megumi Ikemori,Tomoki Nishioka,Seiji Hitaoka,Atsushi Hakura,Shoji Asakura,Yukiko Matsuoka,Sucheendra K Palaniappan
Assessing a compound's mutagenicity using machine learning is an important activity in the drug discovery and development process. Traditional methods of mutagenicity detection, such as Ames test, are expensive and time and labor intensive. In this context, in silico methods that predict a compound mutagenicity with high accuracy are important. Recently, machine-learning (ML) models are increasingly being proposed to improve the accuracy of mutagenicity prediction. While these models are used in practice, there is further scope to improve the accuracy of these models. We hypothesize that choosing the right features to train the model can further lead to better accuracy. We systematically consider and evaluate a combination of novel structural and molecular features which have the maximal impact on the accuracy of models. We rigorously evaluate these features against multiple classification models (from classical ML models to deep neural network models). The performance of the models was assessed using 5- and 10-fold cross-validation and we show that our approach using the molecule structure, molecular properties, and structural alerts as feature sets successfully outperform the state-of-the-art methods for mutagenicity prediction for the Hansen et al. benchmark dataset with an area under the receiver operating characteristic curve of 0.93. More importantly, our framework shows how combining features could benefit model accuracy improvements.
利用机器学习评估化合物的突变性是药物发现和开发过程中的一项重要活动。传统的诱变检测方法,如Ames试验,价格昂贵,耗时费力。在这种情况下,预测具有高准确性的化合物致突变性的计算机方法是重要的。最近,机器学习(ML)模型被越来越多地用于提高诱变预测的准确性。虽然这些模型在实践中使用,但这些模型的准确性还有进一步提高的余地。我们假设选择正确的特征来训练模型可以进一步提高准确性。我们系统地考虑和评估对模型准确性有最大影响的新结构和分子特征的组合。我们针对多个分类模型(从经典ML模型到深度神经网络模型)严格评估这些特征。使用5倍和10倍交叉验证评估了模型的性能,我们表明,我们使用分子结构、分子特性和结构警报作为特征集的方法成功地优于Hansen等基准数据集的最先进的诱变性预测方法,其接收器工作特征曲线下的面积为0.93。更重要的是,我们的框架展示了如何结合特征来提高模型的准确性。
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引用次数: 1
A novel in vitro 3D model of the human bone marrow to bridge the gap between in vitro and in vivo genotoxicity testing. 一种新的体外人类骨髓三维模型,以弥合体外和体内遗传毒性测试之间的差距。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-04 DOI: 10.1093/mutage/geac009
Alexander R Vernon,Roy M Pemberton,H Ruth Morse
The regulatory 2D in vitro micronucleus (MN) assay is part of a battery of tests, used to test for genotoxicity of new and existing compounds before they are assessed in vivo (ICH S2). The 2D MN assay consists of a monolayer of cells, whereas the in vivo bone marrow (BM) setting comprises a multicellular environment within a three-dimensional extracellular matrix. Although the in vitro MN assay follows a robust protocol set out by the Organisation for Economic Co-operation and Development (OECD) to comply with regulatory bodies, some compounds have been identified as negative genotoxicants within the in vitro MN assay but marginally positive when assessed in vivo. The glucocorticoids, which are weakly positive in vivo, have generally been suggested to pose no long-term carcinogenic risk; however, for novel compounds of unknown activity, improved prediction of genotoxicity is imperative. To help address this observation, we describe a novel 3D in vitro assay which aims to replicate the results seen within the in vivo BM microenvironment. AlgiMatrix scaffolds were optimized for seeding with HS-5 human BM stromal cells as a BM microenvironment, to which the human lymphoblast cell line TK6 was added. An MN assay was performed aligning with the 2D regulatory assay protocol. Utilizing this novel 3D in vitro model of the BM, known genotoxicants (mitomycin C, etoposide, and paclitaxel), a negative control (caffeine), and in vivo positive glucocorticoids (dexamethasone and prednisolone) were investigated for the induction of MN. It was found, in agreement with historical in vivo data, that the model could accurately predict the in vivo outcome of the glucocorticoids, unlike the regulatory 2D in vitro MN assay. These preliminary results suggest our 3D MN assay may better predict the outcome of in vivo MN tests, compared with the standard 2D assay.
调控2D体外微核(MN)测定是一系列测试的一部分,用于在体内评估新化合物和现有化合物之前测试其遗传毒性(ICH S2)。二维骨髓分析包括单层细胞,而体内骨髓(BM)环境包括三维细胞外基质内的多细胞环境。尽管体外MN测定遵循经济合作与发展组织(OECD)制定的严格协议,以符合监管机构的要求,但一些化合物在体外MN测定中被确定为阴性基因毒物,但在体内评估时却略微呈阳性。糖皮质激素在体内呈弱阳性,一般认为不会造成长期致癌风险;然而,对于未知活性的新化合物,改进遗传毒性预测是必要的。为了帮助解决这一观察,我们描述了一种新的3D体外实验,旨在复制在体内BM微环境中看到的结果。对AlgiMatrix支架进行优化,以HS-5人骨髓基质细胞作为骨髓微环境,在基质中添加人淋巴母细胞TK6。根据2D调节试验方案进行MN试验。利用这种新型的BM体外3D模型,研究了已知的基因毒物(丝裂霉素C、依托泊苷和紫杉醇)、阴性对照(咖啡因)和体内阳性糖皮质激素(地塞米松和强的松龙)对MN的诱导作用。研究发现,与历史体内数据一致,该模型可以准确预测糖皮质激素的体内结果,而不像2D体外MN测定。这些初步结果表明,与标准的2D分析相比,我们的3D MN分析可以更好地预测体内MN测试的结果。
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引用次数: 2
The role of human umbilical cord mesenchymal stem cells-derived exosomal microRNA-431-5p in survival and prognosis of colorectal cancer patients. 人脐带间充质干细胞来源的外泌体microRNA-431-5p在结直肠癌患者生存和预后中的作用
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-04 DOI: 10.1093/mutage/geac007
Muwen Qu, Junyi Li, Zifu Hong, Fei Jia, Yinghua He, Lingling Yuan

We aim to discuss the role of miR-431-5p in colorectal cancer (CRC) progression via regulating peroxiredoxin 1 (PRDX1). miR-431-5p and PRDX1 expression were detected in CRC tissues and cells, and the relationship between miR-431-5p expression and prognosis of CRC patients was analyzed. Exosomes were extracted from human umbilical cord mesenchymal stem cells (hUCMSCs) and co-cultured with LoVo cells. MTT assay, flow cytometry and Transwell assay were implemented to test cell viability, apoptosis and invasion and migration ability, respectively. The tumor growth was determined as well, and the binding relation between miR-431-5p and PRDX1 was confirmed. miR-431-5p was downregulated and PRDX1 was upregulated in CRC, and miR-431-5p downregulation was associated with poor prognosis. hUCMSC-Exos suppressed the malignant behaviors of LoVo cells, and overexpression of miR-431-5p further aggravated the inhibitory effect of hUCMSC-Exos on LoVo cells. hUCMSC-Exos inhibited PRDX1 expression via miR-431-5p. PRDX1 was targeted by miR-431-5p. miR-431-5p serves as a prognostic biomarker in CRC, and hUCMSC-Exos transfer of miR-431-5p decelerates CRC cell growth by inhibiting PRDX1.

我们的目的是讨论miR-431-5p通过调节过氧化物还氧蛋白1 (PRDX1)在结直肠癌(CRC)进展中的作用。在结直肠癌组织和细胞中检测miR-431-5p和PRDX1的表达,分析miR-431-5p表达与结直肠癌患者预后的关系。从人脐带间充质干细胞(hUCMSCs)中提取外泌体并与LoVo细胞共培养。采用MTT法、流式细胞术和Transwell法分别检测细胞活力、细胞凋亡和侵袭迁移能力。同时测定肿瘤生长情况,证实miR-431-5p与PRDX1的结合关系。在结直肠癌中miR-431-5p下调,PRDX1上调,miR-431-5p下调与预后不良相关。hUCMSC-Exos抑制LoVo细胞的恶性行为,过表达miR-431-5p进一步加重了hUCMSC-Exos对LoVo细胞的抑制作用。hUCMSC-Exos通过miR-431-5p抑制PRDX1的表达。PRDX1被miR-431-5p靶向。miR-431-5p作为CRC的预后生物标志物,并且miR-431-5p的hucscs - exos转移通过抑制PRDX1来减缓CRC细胞的生长。
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引用次数: 8
The mitochondrial poison carbonyl cyanide 3-chlorophenyl hydrazone (CCCP) induces aneugenic effects in primary human fibroblasts: a possible link between mitochondrial dysfunction and chromosomal loss. 线粒体毒性羰基氰化物3-氯苯基腙(CCCP)在原代人成纤维细胞中诱导非优生效应:线粒体功能障碍与染色体丢失之间的可能联系。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-20 DOI: 10.1093/mutage/geac008
F. Marcon, Francesca De Battistis, E. Siniscalchi, R. Crebelli, R. Meschini
An association between proper chromosome segregation and intact mitochondria has been extensively reported. This could be related to the effects on the progression of cell division of altered energy production, increased oxidative stress, and deregulated calcium homeostasis. However, evidence for a direct relationship is still lacking. The present study was aimed at investigating the possible effect of mitochondrial dysfunction on chromosomal instability as detected in primary human cells treated with the mitochondrial poison carbonyl cyanide 3-chlorophenyl hydrazone (CCCP). Chromosome instability was analyzed in anaphase and interphase cells to follow the fate of chromosome damage during the progression of mitosis and the subsequent cell cycle. Through the combination of cytogenetic approaches and molecular analyses, i.e. morphological cell analysis, formation and characterization of micronucleus content, Comet assay, and gene expression, it was demonstrated that the prevalent DNA damage associated with CCCP treatment was the induction of chromosome loss, while primary DNA damage was not detected. No alterations in the shape of anaphase cells were observed nor induction of multipolar spindles. The proper activation of mitotic checkpoint was maintained. A linear dose-response curve characterizing the CCCP effects suggested that multiple cellular targets could be affected by the CCCP-induced mitochondrial dysfunctions triggering aneuploidy. Conversely, a steep increase was induced by the positive control vinblastine, known to have tubulin as a unique target. In addition, the effect of CCCP on mitochondrial function was demonstrated by changes in mitochondrial DNA copy number and in the expression of genes involved in mitochondrial maintenance. Overall, these results indicate that the mitochondrial poison CCCP may induce aneugenic effects.
正确的染色体分离和完整的线粒体之间的关系已被广泛报道。这可能与能量产生改变、氧化应激增加和钙稳态失调对细胞分裂进程的影响有关。然而,直接关系的证据仍然缺乏。本研究旨在探讨线粒体功能障碍对线粒体毒性羰基氰化3-氯苯基腙(CCCP)处理的人原代细胞染色体不稳定性的可能影响。染色体不稳定性分析在细胞的后期和间期,以跟踪染色体损伤的命运在有丝分裂的进程和随后的细胞周期。通过细胞遗传学方法和分子分析相结合,即形态学细胞分析,微核含量的形成和表征,彗星试验和基因表达,证明了CCCP处理相关的普遍DNA损伤是诱导染色体丢失,而未检测到原发性DNA损伤。未观察到后期细胞形状的改变,也未观察到多极纺锤体的诱导。有丝分裂检查点的正常激活得以维持。表征CCCP效应的线性剂量-反应曲线表明,CCCP诱导的线粒体功能障碍可能会影响多个细胞靶点,从而引发非整倍体。相反,阳性对照长春花碱(已知以微管蛋白为独特靶点)诱导了急剧增加。此外,CCCP对线粒体功能的影响通过改变线粒体DNA拷贝数和参与线粒体维持的基因表达得到证实。总之,这些结果表明线粒体毒性CCCP可能引起非优生效应。
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引用次数: 0
Folate deficiency enhances the in vitro genotoxicity of bile acids in human colon and liver cells. 叶酸缺乏增强了胆汁酸在人结肠和肝细胞中的体外遗传毒性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-02 DOI: 10.1093/mutage/geab041
Jianfei Li, Cheng Zhang, Lingzhi Li, Xueqin Hu, Yizhen Jia, Yanan Huang, Ting Lyu, Xu Wang, Xihan Guo

Obese subjects have a high baseline of genotoxic stress, but the underlying mechanism is poorly understood. Given that obesity is associated with high bile acids (BA) and low folate, we aimed to determine the interactive effect of folate deficient or supplementation to the genotoxicity and cytotoxicity of BA in human colon and liver cells. NCM460 and L-02 cells were cultured in folate-deficient (22.6 nM) and replete (2260 nM) Roswell Park Memorial Institute (RPMI)-1640 medium with or without 50 μM deoxycholic acid (DCA) or lithocholic acid (LCA) for 7 days. Moreover, these cells were cultured in folate supplemented (5.65, 11.3 and 22.6 μM) and standard (2.26 μM) medium with 200 μM DCA or LCA for 7 days. Genotoxicity and cytotoxicity were measured using the cytokinesis-block micronucleus cytome assay. Our results showed that under folate-replete condition, 50 μM DCA or LCA significantly increased the rate of micronuclei (MN) in NCM460 and L-02 cells. Significantly, the MN-inducing effect of 50 μM DCA or LCA was further enhanced by folate deficiency. Interestingly, folate supplementation exerted a dose-dependent manner to significantly decrease the rates of MN, nucleoplasmic bridges, nuclear buds, apoptosis, and necrosis induced by 200 μM DCA or LCA in NCM460 and L-02 cells. In conclusion, the genotoxicity of moderate BA (50 μM) was exacerbated by folate deficiency and folate supplementation could efficiently protect cells against the genotoxicity and cytotoxicity of high BA (200 μM).

肥胖受试者具有较高的基因毒性应激基线,但其潜在机制尚不清楚。鉴于肥胖与高胆汁酸(BA)和低叶酸有关,我们旨在确定叶酸缺乏或补充对人类结肠和肝细胞中BA的遗传毒性和细胞毒性的相互作用。NCM460和L-02细胞在叶酸缺乏(22.6 nM)和叶酸充足(2260 nM)的Roswell Park Memorial Institute (RPMI)-1640培养基中分别添加或不添加50 μM脱氧胆酸(DCA)或石胆酸(LCA)培养7天。将这些细胞分别在添加叶酸(5.65、11.3和22.6 μM)和添加200 μM DCA或LCA的标准(2.26 μM)培养基中培养7 d。采用细胞动力学阻断微核细胞组法测定遗传毒性和细胞毒性。结果表明,在叶酸充足的条件下,50 μM DCA或LCA均能显著提高NCM460和L-02细胞的微核(MN)率。叶酸缺乏进一步增强了50 μM DCA或LCA诱导mn的效果。有趣的是,在NCM460和L-02细胞中,补充叶酸具有剂量依赖性,可显著降低200 μM DCA或LCA诱导的MN、核质桥、核芽、凋亡和坏死率。由此可见,叶酸缺乏可加重中等BA (50 μM)的遗传毒性,叶酸补充可有效保护细胞免受高BA (200 μM)的遗传毒性和细胞毒性。
{"title":"Folate deficiency enhances the in vitro genotoxicity of bile acids in human colon and liver cells.","authors":"Jianfei Li,&nbsp;Cheng Zhang,&nbsp;Lingzhi Li,&nbsp;Xueqin Hu,&nbsp;Yizhen Jia,&nbsp;Yanan Huang,&nbsp;Ting Lyu,&nbsp;Xu Wang,&nbsp;Xihan Guo","doi":"10.1093/mutage/geab041","DOIUrl":"https://doi.org/10.1093/mutage/geab041","url":null,"abstract":"<p><p>Obese subjects have a high baseline of genotoxic stress, but the underlying mechanism is poorly understood. Given that obesity is associated with high bile acids (BA) and low folate, we aimed to determine the interactive effect of folate deficient or supplementation to the genotoxicity and cytotoxicity of BA in human colon and liver cells. NCM460 and L-02 cells were cultured in folate-deficient (22.6 nM) and replete (2260 nM) Roswell Park Memorial Institute (RPMI)-1640 medium with or without 50 μM deoxycholic acid (DCA) or lithocholic acid (LCA) for 7 days. Moreover, these cells were cultured in folate supplemented (5.65, 11.3 and 22.6 μM) and standard (2.26 μM) medium with 200 μM DCA or LCA for 7 days. Genotoxicity and cytotoxicity were measured using the cytokinesis-block micronucleus cytome assay. Our results showed that under folate-replete condition, 50 μM DCA or LCA significantly increased the rate of micronuclei (MN) in NCM460 and L-02 cells. Significantly, the MN-inducing effect of 50 μM DCA or LCA was further enhanced by folate deficiency. Interestingly, folate supplementation exerted a dose-dependent manner to significantly decrease the rates of MN, nucleoplasmic bridges, nuclear buds, apoptosis, and necrosis induced by 200 μM DCA or LCA in NCM460 and L-02 cells. In conclusion, the genotoxicity of moderate BA (50 μM) was exacerbated by folate deficiency and folate supplementation could efficiently protect cells against the genotoxicity and cytotoxicity of high BA (200 μM).</p>","PeriodicalId":18889,"journal":{"name":"Mutagenesis","volume":"37 1","pages":"34-43"},"PeriodicalIF":2.7,"publicationDate":"2022-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39634341","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 3
The suitability of micronuclei as markers of relative biological effect. 微核作为相对生物效应标记的适用性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-02 DOI: 10.1093/mutage/geac001
Charlotte J Heaven, Hannah C Wanstall, Nicholas T Henthorn, John-William Warmenhoven, Samuel P Ingram, Amy L Chadwick, Elham Santina, Jamie Honeychurch, Christine K Schmidt, Karen J Kirkby, Norman F Kirkby, Neil G Burnet, Michael J Merchant

Micronucleus (MN) formation is routinely used as a biodosimeter for radiation exposures and has historically been used as a measure of DNA damage in cells. Strongly correlating with dose, MN are also suggested to indicate radiation quality, differentiating between particle and photon irradiation. The "gold standard" for measuring MN formation is Fenech's cytokinesis-block micronucleus (CBMN) cytome assay, which uses the cytokinesis blocking agent cytochalasin-B. Here, we present a comprehensive analysis of the literature investigating MN induction trends in vitro, collating 193 publications, with 2476 data points. Data were collected from original studies that used the CBMN assay to quantify MN in response to ionizing radiation in vitro. Overall, the meta-analysis showed that individual studies mostly have a linear increase of MN with dose [85% of MN per cell (MNPC) datasets and 89% of percentage containing MN (PCMN) datasets had an R2 greater than 0.90]. However, there is high variation between studies, resulting in a low R2 when data are combined (0.47 for MNPC datasets and 0.60 for PCMN datasets). Particle type, species, cell type, and cytochalasin-B concentration were suggested to influence MN frequency. However, variation in the data meant that the effects could not be strongly correlated with the experimental parameters investigated. There is less variation between studies when comparing the PCMN rather than the number of MNPC. Deviation from CBMN protocol specified timings did not have a large effect on MN induction. However, further analysis showed less variation between studies following Fenech's protocol closely, which provided more reliable results. By limiting the cell type and species as well as only selecting studies following the Fenech protocol, R2 was increased to 0.64 for both measures. We therefore determine that due to variation between studies, MN are currently a poor predictor of radiation-induced DNA damage and make recommendations for futures studies assessing MN to improve consistency between datasets.

微核(MN)的形成通常被用作辐照的生物测定指标,历来被用作细胞 DNA 损伤的测量指标。微核与剂量密切相关,也被认为是辐射质量的标志,可区分粒子和光子辐照。测量 MN 形成的 "黄金标准 "是 Fenech 的细胞分裂阻滞微核(CBMN)细胞组测定法,该方法使用细胞分裂阻滞剂细胞松弛素-B。在此,我们对研究体外诱导 MN 趋势的文献进行了全面分析,共整理出 193 篇文献,2476 个数据点。数据收集自使用 CBMN 检测法量化电离辐射体外诱导 MN 的原始研究。总体而言,荟萃分析表明,个别研究的 MN 大多随剂量呈线性增长[85% 的每个细胞 MN(MNPC)数据集和 89% 的含 MN 百分比(PCMN)数据集的 R2 大于 0.90]。然而,不同研究之间的差异很大,导致合并数据后的 R2 较低(MNPC 数据集为 0.47,PCMN 数据集为 0.60)。颗粒类型、物种、细胞类型和细胞松弛素-B 浓度被认为会影响 MN 频率。然而,数据的差异意味着这些影响与所研究的实验参数并不密切相关。在比较 PCMN 而非 MNPC 数量时,不同研究之间的差异较小。偏离 CBMN 方案规定的时间对 MN 诱导的影响不大。不过,进一步分析表明,严格遵循 Fenech 方案的研究之间的差异较小,这提供了更可靠的结果。通过限制细胞类型和物种以及只选择遵循 Fenech 方案的研究,两个测量指标的 R2 都增加到了 0.64。因此,我们认为,由于不同研究之间存在差异,MN 目前还不能很好地预测辐射诱导的 DNA 损伤,并对未来评估 MN 的研究提出了建议,以提高数据集之间的一致性。
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引用次数: 0
Folic acid deficiency increases sensitivity to DNA damage by glucose and methylglyoxal. 叶酸缺乏会增加对葡萄糖和甲基乙二醛损伤DNA的敏感性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-02 DOI: 10.1093/mutage/geac003
Leigh Donnellan, Bradley S Simpson, Varinderpal S Dhillon, Maurizio Costabile, Michael Fenech, Permal Deo

Type 2 diabetes (T2D) is associated with elevated frequencies of micronuclei (MNi) and other DNA damage biomarkers. Interestingly, individuals with T2D are more likely to be deficient in micronutrients (folic acid, pyridoxal-phosphate, cobalamin) that play key roles in one-carbon metabolism and maintaining genomic integrity. Furthermore, it has recently been shown that deficiencies in these nutrients, in particular folic acid leaves cells susceptible to glucose-induced DNA damage. Therefore, we sought to investigate if the B lymphoblastoid WIL2-NS cell line cultured under folic acid-deficient conditions was more sensitive to DNA damage induced by glucose, or the reactive glycolytic byproduct methylglyoxal (MGO) and subsequent advanced glycation endproduct formation. Here, we show that only WIL2-NS cultured under folic acid-deficient conditions (23 nmol/l) experience an increase in MNi frequency when exposed to high concentrations of glucose (45 mmol/l) or MGO (100 µmol/l). Furthermore, we showed aminoguanidine, a well-validated MGO and free radical scavenger was able to prevent further MNi formation in folic acid-deficient cells exposed to high glucose, which may be due to a reduction in MGO-induced oxidative stress. Interestingly, we also observed an increase in MGO and other dicarbonyl stress biomarkers in folic acid-deficient cells, irrespective of glucose concentrations. Overall, our evidence shows that folic acid-deficient WIL2-NS cells are more susceptible to glucose and/or MGO-induced MNi formation. These results suggest that individuals with T2D experiencing hyperglycemia and folic acid deficiency may be at higher risk of chromosomal instability.

2型糖尿病(T2D)与微核(MNi)和其他DNA损伤生物标志物的频率升高有关。有趣的是,患有T2D的个体更有可能缺乏微量营养素(叶酸、吡哆醛-磷酸、钴胺素),这些微量营养素在单碳代谢和维持基因组完整性中起着关键作用。此外,最近的研究表明,缺乏这些营养物质,特别是叶酸,会使细胞容易受到葡萄糖诱导的DNA损伤。因此,我们试图研究在叶酸缺乏条件下培养的B淋巴母细胞样WIL2-NS细胞系是否对葡萄糖诱导的DNA损伤更敏感,还是对活性糖酵解副产物甲基乙二醛(MGO)和随后的晚期糖基化终产物形成更敏感。在这里,我们发现只有在叶酸缺乏条件下(23 nmol/l)培养的WIL2-NS在暴露于高浓度葡萄糖(45 mmol/l)或MGO (100 μ mol/l)时,MNi频率增加。此外,我们发现氨基胍,一种经过验证的MGO和自由基清除剂,能够在暴露于高葡萄糖的叶酸缺乏细胞中阻止进一步的MNi形成,这可能是由于MGO诱导的氧化应激减少。有趣的是,我们还观察到叶酸缺乏细胞中MGO和其他二羰基应激生物标志物的增加,与葡萄糖浓度无关。总的来说,我们的证据表明叶酸缺乏的WIL2-NS细胞更容易受到葡萄糖和/或氧化镁诱导的MNi形成的影响。这些结果表明,患有高血糖和叶酸缺乏的T2D患者可能有更高的染色体不稳定风险。
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引用次数: 3
The BlueScreen HC assay to predict the genotoxic potential of fragrance materials. 用BlueScreen HC法预测香精材料的遗传毒性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-02 DOI: 10.1093/mutage/geac004
Yax Thakkar,Kaushal Joshi,Christina Hickey,Joseph Wahler,Brian Wall,Sylvain Etter,Benjamin Smith,Peter Griem,Matthew Tate,Frank Jones,Gladys Oudraogo,Stefan Pfuhler,Christopher Choi,Gary Williams,Helmut Greim,Gerhard Eisenbrand,Wolfgang Dekant,Anne Marie Api
BlueScreen HC is a mammalian cell-based assay for measuring the genotoxicity and cytotoxicity of chemical compounds and mixtures. The BlueScreen HC assay has been utilized at the Research Institute for Fragrance Materials in a safety assessment program as a screening tool to prioritize fragrance materials for higher-tier testing, as supporting evidence when using a read-across approach, and as evidence to adjust the threshold of toxicological concern. Predictive values for the BlueScreen HC assay were evaluated based on the ability of the assay to predict the outcome of in vitro and in vivo mutagenicity and chromosomal damage genotoxicity assays. A set of 371 fragrance materials was assessed in the BlueScreen HC assay along with existing or newly generated in vitro and in vivo genotoxicity data. Based on a weight-of-evidence approach, the majority of materials in the data set were deemed negative and concluded not to have the potential to be genotoxic, while only a small proportion of materials were determined to show genotoxic effects in these assays. Analysis of the data set showed a combination of high positive agreement but low negative agreement between BlueScreen HC results, in vitro regulatory genotoxicity assays, and higher-tier test results. The BlueScreen HC assay did not generate any false negatives, thereby providing robustness when utilizing it as a high-throughput screening tool to evaluate the large inventory of fragrance materials. From the perspective of protecting public health, it is desirable to have no or minimal false negatives, as a false-negative result may incorrectly indicate the lack of a genotoxicity hazard. However, the assay did have a high percentage of false-positive results, resulting in poor positive predictivity of the in vitro genotoxicity test battery outcome. Overall, the assay generated 100% negative predictivity and 3.9% positive predictivity. In addition to the data set of 371 fragrance materials, 30 natural complex substances were evaluated for BlueScreen HC, Ames, and in vitro micronucleus assay, and a good correlation in all three assays was observed. Overall, while a positive result may have to be further investigated, these findings suggest that the BlueScreen HC assay can be a valuable screening tool to detect the genotoxic potential of fragrance materials and mixtures.
BlueScreen HC是一种基于哺乳动物细胞的检测方法,用于测量化学化合物和混合物的遗传毒性和细胞毒性。BlueScreen HC检测已被香料材料研究所用于安全评估项目,作为优先考虑更高级别测试的香料材料的筛选工具,在使用跨读方法时作为支持证据,并作为调整毒理学关注阈值的证据。BlueScreen HC检测的预测值是根据该检测预测体内和体外诱变性和染色体损伤基因毒性检测结果的能力来评估的。在BlueScreen HC试验中,对371种香精材料进行了评估,并结合了现有的或新产生的体外和体内遗传毒性数据。根据证据权重法,数据集中的大多数材料被认为是阴性的,结论是没有潜在的遗传毒性,而只有一小部分材料在这些分析中被确定为显示遗传毒性作用。对数据集的分析显示,BlueScreen HC结果、体外调节遗传毒性试验和更高级别测试结果之间的阳性一致性很高,阴性一致性很低。BlueScreen HC分析没有产生任何假阴性,因此在将其作为高通量筛选工具来评估大量香料材料库存时提供了稳健性。从保护公众健康的角度来看,最好没有假阴性结果或假阴性结果最少,因为假阴性结果可能错误地表明没有遗传毒性危害。然而,该分析确实有很高的假阳性结果百分比,导致体外遗传毒性测试电池结果的阳性预测性较差。总体而言,该分析产生了100%的阴性预测和3.9%的阳性预测。在371种香精材料的基础上,对30种天然复合物质进行了BlueScreen HC、Ames和体外微核分析,三者均具有良好的相关性。总的来说,虽然阳性结果可能需要进一步研究,但这些发现表明,BlueScreen HC试验可以成为一种有价值的筛选工具,用于检测香料材料和混合物的遗传毒性潜力。
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引用次数: 33
Cobalt oxide (Co3O4) nanoparticles induced genotoxicity in Chinese hamster lung fibroblast (V79) cells through modulation of reactive oxygen species. 纳米氧化钴(Co3O4)通过调节活性氧诱导中国仓鼠肺成纤维细胞(V79)遗传毒性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-03-01 DOI: 10.1093/mutage/geac005
Onila Lugun, Jagreeti Singh, R. Thakur, A. Pandey
Incessant production, pervasive applications in different fields, and eventually unintended exposure of cobalt oxide nanoparticles (Co3O4 NPs) lead to rise in their toxicity studies toward human health. However, the information regarding the potential toxicity mechanisms of Co3O4 NPs especially genotoxicity is still sparse with missing interconnections. So far, only solitary reports on Co3O4 NPs are at hand, bearing witness to reactive oxygen species (ROS)-mediated DNA damage in lung cells. To address this, we evaluated the Co3O4 NP-induced cytotoxic and genotoxic potential in Chinese hamster lung fibroblast cell line (V79). Our preliminary results demonstrate that Co3O4 NPs at concentrations of 20-100 µg/ml induced moderate mortality after 24-h exposure. However, these low concentrations caused a significant reduction in various organelles' activity in a concentration-dependent manner. Mitochondrial activity and membrane potential were found to be compromised due to NP exposure in a concentration-dependent manner. The study affirms that Co3O4 NPs inhibited lysosomal activity in V79 cells. In addition to this, Co3O4 NPs are also found to stimulate free oxygen radical generation. Genotoxicity studies revealed a potent and dose-dependent effect of non-cytotoxic concentrations of Co3O4 NPs in the induction of DNA lesions. Interestingly, N-acetylcysteine, a free oxygen radical scavenger (5, 10 mM, pretreatment) inhibited the progression of free oxygen radicals and induction of Co3O4 NP-mediated DNA lesions. This suggests the ROS-mediated genotoxic potential of Co3O4 NPs.
钴氧化物纳米粒子(Co3O4 NPs)的不断生产,在不同领域的广泛应用,以及最终意外暴露,导致其对人类健康的毒性研究增加。然而,关于Co3O4 NPs的潜在毒性机制,特别是遗传毒性的信息仍然很少,缺乏相互联系。到目前为止,只有关于Co3O4 NPs的单独报道,见证了活性氧(ROS)介导的肺细胞DNA损伤。为了解决这个问题,我们评估了Co3O4 np诱导的中国仓鼠肺成纤维细胞系(V79)的细胞毒性和基因毒性潜力。我们的初步结果表明,浓度为20-100 μ g/ml的Co3O4 NPs在暴露24小时后可引起中度死亡。然而,这些低浓度以浓度依赖的方式引起各种细胞器活性的显着降低。发现线粒体活性和膜电位由于NP暴露以浓度依赖的方式受到损害。本研究证实Co3O4 NPs抑制V79细胞溶酶体活性。此外,还发现Co3O4 NPs可以刺激自由基的产生。遗传毒性研究显示,非细胞毒性浓度的Co3O4 NPs在诱导DNA损伤中具有强效和剂量依赖性作用。有趣的是,n -乙酰半胱氨酸,一种自由基清除剂(5,10 mM,预处理)抑制自由基的进展和诱导Co3O4 np介导的DNA损伤。这表明Co3O4 NPs具有ros介导的遗传毒性。
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引用次数: 2
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Mutagenesis
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