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EEMGS New Investigators: rising stars in environmental mutagenesis. 新研究者:环境诱变的新星。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2023-02-03 DOI: 10.1093/mutage/geac026
Ezgi Eyluel Bankoglu, Fiona Chapman, Marko Gerić
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引用次数: 0
Air pollution in Sarajevo, Bosnia and Herzegovina, assessed by plant comet assay. 用植物彗星测定法评价波斯尼亚和黑塞哥维那萨拉热窝的空气污染。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2023-02-03 DOI: 10.1093/mutage/geac022
Mujo Hasanovic, Tamara Cetkovic, Bertrand Pourrut, Lejla Caluk Klacar, Maida Hadzic Omanovic, Adaleta Durmic-Pasic, Sanin Haveric, Anja Haveric

Bosnia and Herzegovina (B&H) is among the European countries with the highest rate of air pollution-related death cases and the poorest air quality. The main causes are solid fuel consumption, traffic, and the poorly developed or implemented air pollution reduction policies. In addition, the city of Sarajevo, the capital of B&H, suffers temperature inversion episodes in autumn/winter months, which sustain air pollution. Human biomonitoring studies may be confounded by the lifestyle of subjects or possible metabolic alterations. Therefore, this study aimed to evaluate Ligustrum vulgare L. as a model for air pollution monitoring by measuring DNA damage at one rural and two urban sites. DNA damage was measured as tail intensity (TI) in L. vulgare leaves, considering seasonal, sampling period, leaf position and staging, and spatial (urban versus rural) variation. Effects of COVID-19 lockdown on TI were assessed by periodical monitoring at one of the selected sites, while in-house grown L. vulgare plants were used to test differences between outdoor and indoor air pollution effects for the same sampling period. Significantly higher TI was generally observed in leaves collected in Campus in December 2020 and 2021 compared with March (P < 0.0001). Outer and adult leaves showed higher TI values, except for the rural site where no differences for these categories were found. Leaves collected in the proximity of the intensive traffic showed significantly higher TI values (P < 0.001), regardless of the sampling period and the stage of growth. In regards to the COVID-19 lockdown, higher TI (P < 0.001) was registered in December 2020, after the lockdown period, than in periods before COVID-19 outbreak or immediately after the lockdown in 2020. This also reflects mild air pollution conditions in summer. TI values for the in-house grown leaves were significantly lower compared to those in situ. Results showed that L. vulgare may present a consistent model for the air pollution biomonitoring but further studies are needed to establish the best association between L. vulgare physiology, air quality data, and air pollution effects.

波斯尼亚和黑塞哥维那是与空气污染有关的死亡率最高、空气质量最差的欧洲国家之一。主要原因是固体燃料消耗,交通,以及不完善或执行的空气污染减少政策。此外,波斯尼亚和黑塞哥维那的首都萨拉热窝市在秋冬月份出现逆温现象,造成空气污染。人体生物监测研究可能会被受试者的生活方式或可能的代谢改变所混淆。因此,本研究旨在通过测量一个农村和两个城市地点的DNA损伤来评价女贞子(Ligustrum vulgare L.)作为空气污染监测的模型。考虑季节、采样周期、叶片位置和分期以及城市和农村的空间差异,以尾强度(TI)来测量L. vulgare叶片的DNA损伤。通过在选定的一个站点进行定期监测来评估COVID-19封锁对TI的影响,同时使用室内种植的L. vulgare植物来测试相同采样周期内室外和室内空气污染影响的差异。与3月份相比,2020年12月和2021年12月校园采集的叶片TI普遍显著升高(P < 0.0001)。外叶和成叶的TI值较高,除了农村地区,这些类别没有发现差异。无论采样周期和生长阶段如何,靠近交通密集地区采集的叶片TI值均显著高于其他地区(P < 0.001)。在新冠肺炎封城后,2020年12月的TI (P < 0.001)高于新冠肺炎疫情爆发前或2020年封城后的时期。这也反映了夏季空气污染程度较轻。室内生长叶片的TI值明显低于原位叶片。结果表明,普通乳酸菌可能为空气污染的生物监测提供了一致的模型,但需要进一步的研究来建立普通乳酸菌生理、空气质量数据和空气污染效应之间的最佳关联。
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引用次数: 3
The roles of mutated SPINK1 gene in prostate cancer cells. SPINK1基因突变在前列腺癌细胞中的作用。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-12-08 DOI: 10.1093/mutage/geac019
Xiuyi Pan, Junya Tan, Xiaoxue Yin, Qianqi Liu, Linmao Zheng, Zhengzheng Su, Qiao Zhou, Ni Chen

SPINK1-positive prostate cancer (PCa) has been identified as an aggressive PCa subtype. However, there is a lack of definite studies to elucidate the underlying mechanism of the loss of SPINK1 expression in most PCa cells except 22Rv1 cells, which are derived from a human prostatic carcinoma xenograft, CWR22R. The aim of this study was to investigate the mechanisms of SPINK1 protein positive/negative expression and its biological roles in PCa cell lines. SPINK1 mRNA was highly expressed in 22Rv1 cells compared with LNCaP, C4-2B, DU145, and PC-3 cells, and the protein was only detected in 22Rv1 cells. Among these cell lines, the wild-type SPINK1 coding sequence was only found in 22Rv1 cells, and two mutation sites, the c.194G>A missense mutation and the c.210T>C synonymous mutation, were found in other cell lines. Our further research showed that the mutations were associated with a reduction in SPINK1 mRNA and protein levels. Functional experiments indicated that SPINK1 promoted PC-3 cell proliferation, migration, and invasion, while knockdown of SPINK1 attenuated 22Rv1 cell proliferation, migration, and invasion. The wild-type SPINK1 gene can promote the malignant behaviors of cells more than the mutated ones. Cell cycle analysis by flow cytometry showed that SPINK1 decreased the percentage of cells in the G0/G1 phase and increased the percentage of S phase cells. We demonstrated that the c.194G>A and c.210T>C mutations in the SPINK1 gene decreased the mRNA and protein levels. The wild-type SPINK1 gene is related to aggressive biological behaviors of PCa cells and may be a potential therapeutic target for PCa.

spink1阳性前列腺癌(PCa)已被确定为侵袭性前列腺癌亚型。然而,除了来自人前列腺癌异种移植CWR22R的22Rv1细胞外,缺乏明确的研究来阐明SPINK1在大多数PCa细胞中表达缺失的潜在机制。本研究旨在探讨SPINK1蛋白在PCa细胞系中阳性/阴性表达的机制及其生物学作用。与LNCaP、C4-2B、DU145和PC-3细胞相比,SPINK1 mRNA在22Rv1细胞中高表达,且该蛋白仅在22Rv1细胞中检测到。在这些细胞系中,野生型SPINK1编码序列仅在22Rv1细胞中发现,在其他细胞系中发现了C . 194g >A错义突变和C . 210t >C同义突变两个突变位点。我们进一步的研究表明,这些突变与SPINK1 mRNA和蛋白水平的降低有关。功能实验表明,SPINK1可促进PC-3细胞的增殖、迁移和侵袭,而敲低SPINK1可减弱22Rv1细胞的增殖、迁移和侵袭。野生型SPINK1基因比突变型更能促进细胞的恶性行为。流式细胞术细胞周期分析显示,SPINK1降低了G0/G1期细胞的比例,增加了S期细胞的比例。我们发现SPINK1基因的C . 194g >A和C . 210t >C突变降低了mRNA和蛋白水平。野生型SPINK1基因与前列腺癌细胞的侵袭性生物学行为有关,可能是前列腺癌的潜在治疗靶点。
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引用次数: 0
Impact of experimental design factors on the potency of genotoxicants in in vitro tests. 实验设计因素对基因毒物体外试验效力的影响。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-12-08 DOI: 10.1093/mutage/geac025
Julie Sanders, Anouck Thienpont, Roel Anthonissen, Tamara Vanhaecke, Birgit Mertens

Previous studies have shown that differences in experimental design factors may alter the potency of genotoxic compounds in in vitro genotoxicity tests. Most of these studies used traditional statistical methods based on the lowest observed genotoxic effect levels, whereas more appropriate methods, such as the benchmark dose (BMD) approach, are now available to compare genotoxic potencies under different test conditions. We therefore investigated the influence of two parameters, i.e. cell type and exposure duration, on the potencies of two known genotoxicants [aflatoxin B1 and ethyl methanesulfonate (EMS)] in the in vitro micronucleus (MN) assay and comet assay (CA). Both compounds were tested in the two assays using two cell types (i.e. CHO-K1 and TK6 cells). To evaluate the effect of exposure duration, the genotoxicity of EMS was assessed after 3 and 24 h of exposure. Results were analyzed using the BMD covariate approach, also referred to as BMD potency ranking, and the outcome was compared with that of more traditional statistical methods based on lowest observed genotoxic effect levels. When comparing the in vitro MN results obtained in both cell lines with the BMD covariate approach, a difference in potency was detected only when EMS exposures were conducted for 24 h, with TK6 cells being more sensitive. No difference was observed in the potency of both EMS and aflatoxin B1 in the in vitro CA using both cell lines. In contrast, EMS was more potent after 24 h exposure compared with a 3 h exposure under all tested conditions, i.e. in the in vitro MN assay and CA in both cell lines. Importantly, for several of the investigated factors, the BMD covariate method could not be used to confirm the differences in potencies detected with the traditional statistical methods, thus highlighting the need to evaluate the impact of experimental design factors with adequate approaches.

以往的研究表明,实验设计因素的差异可能会改变体外基因毒性试验中基因毒性化合物的效价。这些研究大多采用基于最低观察到的遗传毒性效应水平的传统统计方法,而更合适的方法,如基准剂量(BMD)方法,现在可用于比较不同试验条件下的遗传毒性效力。因此,我们在体外微核(MN)试验和彗星试验(CA)中研究了两个参数,即细胞类型和暴露时间对两种已知基因毒物[黄曲霉毒素B1和甲磺酸乙酯(EMS)]效力的影响。两种化合物在两种检测中使用两种细胞类型(即CHO-K1和TK6细胞)进行测试。为了评估暴露时间的影响,在暴露3 h和24 h后评估EMS的遗传毒性。结果采用骨密度协变量法进行分析,也称为骨密度效价排序,并将结果与基于最低观察到的遗传毒性效应水平的更传统的统计方法进行比较。当将两种细胞系的体外MN结果与BMD共变量方法进行比较时,仅在EMS暴露24小时时才检测到效力差异,其中TK6细胞更敏感。两种细胞系体外CA中EMS和黄曲霉毒素B1的效力均无差异。相比之下,在所有测试条件下,即在体外MN测定和两种细胞系的CA中,EMS在24小时暴露后比暴露3小时更有效。重要的是,对于一些被调查的因素,BMD协变量方法不能用于确认用传统统计方法检测到的效力差异,因此强调需要用适当的方法评估实验设计因素的影响。
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引用次数: 1
Ex vivo explant model of adenoma and colorectal cancer to explore mechanisms of action and patient response to cancer prevention therapies. 腺瘤和结直肠癌离体移植模型探讨作用机制和患者对癌症预防治疗的反应。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-12-08 DOI: 10.1093/mutage/geac020
Sam Khan, Gareth J Miles, Constantinos Demetriou, Zahirah Sidat, Nalini Foreman, Kevin West, Ankur Karmokar, Lynne Howells, Catrin Pritchard, Anne L Thomas, Karen Brown

Colorectal cancer (CRC) is the second leading cause of cancer death in the UK. Novel therapeutic prevention strategies to inhibit the development and progression of CRC would be invaluable. Potential contenders include low toxicity agents such as dietary-derived agents or repurposed drugs. However, in vitro and in vivo models used in drug development often do not take into account the heterogeneity of tumours or the tumour microenvironment. This limits translation to a clinical setting. Our objectives were to develop an ex vivo method utilizing CRC and adenoma patient-derived explants (PDEs) which facilitates screening of drugs, assessment of toxicity, and efficacy. Our aims were to use a multiplexed immunofluorescence approach to demonstrate the viability of colorectal tissue PDEs, and the ability to assess immune cell composition and interactions. Using clinically achievable concentrations of curcumin, we show a correlation between curcumin-induced tumour and stromal apoptosis (P < .001) in adenomas and cancers; higher stromal content is associated with poorer outcomes. B cell (CD20+ve) and T cell (CD3+ve) density of immune cells within tumour regions in control samples correlated with curcumin-induced tumour apoptosis (P < .001 and P < .05, respectively), suggesting curcumin-induced apoptosis is potentially predicted by baseline measures of immune cells. A decrease in distance between T cells (CD3+ve) and cytokeratin+ve cells was observed, indicating movement of T cells (CD3+ve) towards the tumour margin (P < .001); this change is consistent with an immune environment associated with improved outcomes. Concurrently, an increase in distance between T cells (CD3+ve) and B cells (CD20+ve) was detected following curcumin treatment (P < .001), which may result in a less immunosuppressive tumour milieu. The colorectal tissue PDE model offers significant potential for simultaneously assessing multiple biomarkers in response to drug exposure allowing a greater understanding of mechanisms of action and efficacy in relevant target tissues, that maintain both their structural integrity and immune cell compartments.

结直肠癌(CRC)是英国癌症死亡的第二大原因。新的治疗预防策略抑制结直肠癌的发展和进展将是非常宝贵的。潜在的竞争者包括低毒性制剂,如膳食衍生制剂或重新利用的药物。然而,用于药物开发的体外和体内模型通常没有考虑肿瘤或肿瘤微环境的异质性。这限制了对临床环境的翻译。我们的目标是开发一种利用结直肠癌和腺瘤患者源性外植体(PDEs)的体外方法,以促进药物筛选,评估毒性和疗效。我们的目的是使用多重免疫荧光方法来证明结直肠组织PDEs的生存能力,以及评估免疫细胞组成和相互作用的能力。使用临床可达到的姜黄素浓度,我们发现在腺瘤和癌症中,姜黄素诱导的肿瘤和基质凋亡之间存在相关性(P < 0.001);基质含量越高,预后越差。对照样本中肿瘤区域免疫细胞的B细胞(CD20+ve)和T细胞(CD3+ve)密度与姜黄素诱导的肿瘤凋亡相关(分别为P < 0.001和P < 0.05),表明姜黄素诱导的肿瘤凋亡可能通过免疫细胞的基线测量来预测。T细胞(CD3+ve)与细胞角蛋白+ve之间的距离减小,表明T细胞(CD3+ve)向肿瘤边缘移动(P < 0.001);这一变化与免疫环境的改善是一致的。同时,姜黄素治疗后,T细胞(CD3+ve)和B细胞(CD20+ve)之间的距离增加(P < 0.001),这可能导致免疫抑制较低的肿瘤环境。结直肠组织PDE模型为同时评估多种生物标志物对药物暴露的反应提供了巨大的潜力,从而更好地了解相关靶组织的作用机制和疗效,同时保持其结构完整性和免疫细胞区室。
{"title":"Ex vivo explant model of adenoma and colorectal cancer to explore mechanisms of action and patient response to cancer prevention therapies.","authors":"Sam Khan,&nbsp;Gareth J Miles,&nbsp;Constantinos Demetriou,&nbsp;Zahirah Sidat,&nbsp;Nalini Foreman,&nbsp;Kevin West,&nbsp;Ankur Karmokar,&nbsp;Lynne Howells,&nbsp;Catrin Pritchard,&nbsp;Anne L Thomas,&nbsp;Karen Brown","doi":"10.1093/mutage/geac020","DOIUrl":"https://doi.org/10.1093/mutage/geac020","url":null,"abstract":"<p><p>Colorectal cancer (CRC) is the second leading cause of cancer death in the UK. Novel therapeutic prevention strategies to inhibit the development and progression of CRC would be invaluable. Potential contenders include low toxicity agents such as dietary-derived agents or repurposed drugs. However, in vitro and in vivo models used in drug development often do not take into account the heterogeneity of tumours or the tumour microenvironment. This limits translation to a clinical setting. Our objectives were to develop an ex vivo method utilizing CRC and adenoma patient-derived explants (PDEs) which facilitates screening of drugs, assessment of toxicity, and efficacy. Our aims were to use a multiplexed immunofluorescence approach to demonstrate the viability of colorectal tissue PDEs, and the ability to assess immune cell composition and interactions. Using clinically achievable concentrations of curcumin, we show a correlation between curcumin-induced tumour and stromal apoptosis (P < .001) in adenomas and cancers; higher stromal content is associated with poorer outcomes. B cell (CD20+ve) and T cell (CD3+ve) density of immune cells within tumour regions in control samples correlated with curcumin-induced tumour apoptosis (P < .001 and P < .05, respectively), suggesting curcumin-induced apoptosis is potentially predicted by baseline measures of immune cells. A decrease in distance between T cells (CD3+ve) and cytokeratin+ve cells was observed, indicating movement of T cells (CD3+ve) towards the tumour margin (P < .001); this change is consistent with an immune environment associated with improved outcomes. Concurrently, an increase in distance between T cells (CD3+ve) and B cells (CD20+ve) was detected following curcumin treatment (P < .001), which may result in a less immunosuppressive tumour milieu. The colorectal tissue PDE model offers significant potential for simultaneously assessing multiple biomarkers in response to drug exposure allowing a greater understanding of mechanisms of action and efficacy in relevant target tissues, that maintain both their structural integrity and immune cell compartments.</p>","PeriodicalId":18889,"journal":{"name":"Mutagenesis","volume":"37 5-6","pages":"227-237"},"PeriodicalIF":2.7,"publicationDate":"2022-12-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC9730503/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9115885","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 1
DNA damage in peripheral blood lymphocytes of severely ill COVID-19 patients in relation to inflammatory markers and parameters of hemostasis. 重症COVID-19患者外周血淋巴细胞DNA损伤与炎症标志物和止血参数的关系
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-10-26 DOI: 10.1093/mutage/geac011
Olgica Mihaljevic,Snezana Zivancevic-Simonovic,Vojislav Cupurdija,Milos Marinkovic,Jovana Tubic Vukajlovic,Aleksandra Markovic,Marijana Stanojevic-Pirkovic,Olivera Milosevic-Djordjevic
Bearing in the mind that a variety of agents can contribute to genome instability, including viral infections, the aim of this study was to analyze DNA damage in hospitalized COVID-19 patients and its relationship with certain laboratory parameters. The potential impact of applied therapy and chest X-rays on DNA damage was also estimated. The study population included 24 severely COVID-19 patients and 15 healthy control subjects. The level of DNA damage was measured as genetic damage index (GDI) by comet assay. The standard laboratory methods and certified enzymatic reagents for the appropriate autoanalyzers were performed for the determination of the biochemical and hematological parameters. COVID-19 patients had significantly higher level of DNA damage compared with control subjects. The absolute number of neutrophil leukocytes was statistically higher, while the absolute number of lymphocytes was statistically lower in COVID-19 patients than in healthy controls. The analysis of the relationship between DNA damage and laboratory parameters indicated that GDI was positively correlated with interleukin 6 (IL-6) concentration and negatively with platelet count in COVID-19 patients. The level of DNA damage was slightly higher in female patients, in whom it was demonstrated a positive correlation of GDI with C-reactive protein (CRP) and procalcitonin. Likewise, there was a negative relationship of GDI and platelet count, and positive relationship of GDI and activated partial thromboplastin time (aPTT) in female population. The applied therapy (antibiotics, corticosteroid, anticoagulant, and antiviral therapy) as well as chest X rays has been shown to have genotoxic potential. The level of DNA damage significantly corresponds to the inflammatory markers and parameters of hemostasis in COVID-19 patients. In conclusion, inflammation, smoking habit, applied therapy, and chest X rays contribute to a higher level of DNA damage in COVID-19 patients.
考虑到多种因素可导致基因组不稳定,包括病毒感染,本研究的目的是分析住院COVID-19患者的DNA损伤及其与某些实验室参数的关系。应用治疗和胸部x光对DNA损伤的潜在影响也进行了估计。研究人群包括24例COVID-19重症患者和15例健康对照。以遗传损伤指数(GDI)测定DNA损伤水平。采用标准实验室方法和经认证的酶试剂进行生化和血液学参数的测定。新冠肺炎患者的DNA损伤水平明显高于对照组。与健康对照组相比,新冠肺炎患者中性粒细胞的绝对数量有统计学差异,而淋巴细胞的绝对数量有统计学差异。分析DNA损伤与实验室参数的关系发现,GDI与COVID-19患者白细胞介素6 (IL-6)浓度呈正相关,与血小板计数呈负相关。女性患者的DNA损伤水平略高,GDI与c反应蛋白(CRP)和降钙素原呈正相关。女性人群GDI与血小板计数呈负相关,GDI与活化的部分凝血活素时间(aPTT)呈正相关。应用治疗(抗生素、皮质类固醇、抗凝血剂和抗病毒治疗)以及胸部X射线已被证明具有遗传毒性。DNA损伤水平与COVID-19患者的炎症标志物和止血参数显著对应。总之,炎症、吸烟习惯、应用治疗和胸部X光检查导致COVID-19患者的DNA损伤水平更高。
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引用次数: 4
Optimizing machine-learning models for mutagenicity prediction through better feature selection. 优化机器学习模型,通过更好的特征选择来预测突变性。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-10-26 DOI: 10.1093/mutage/geac010
Nicolas K Shinada,Naoki Koyama,Megumi Ikemori,Tomoki Nishioka,Seiji Hitaoka,Atsushi Hakura,Shoji Asakura,Yukiko Matsuoka,Sucheendra K Palaniappan
Assessing a compound's mutagenicity using machine learning is an important activity in the drug discovery and development process. Traditional methods of mutagenicity detection, such as Ames test, are expensive and time and labor intensive. In this context, in silico methods that predict a compound mutagenicity with high accuracy are important. Recently, machine-learning (ML) models are increasingly being proposed to improve the accuracy of mutagenicity prediction. While these models are used in practice, there is further scope to improve the accuracy of these models. We hypothesize that choosing the right features to train the model can further lead to better accuracy. We systematically consider and evaluate a combination of novel structural and molecular features which have the maximal impact on the accuracy of models. We rigorously evaluate these features against multiple classification models (from classical ML models to deep neural network models). The performance of the models was assessed using 5- and 10-fold cross-validation and we show that our approach using the molecule structure, molecular properties, and structural alerts as feature sets successfully outperform the state-of-the-art methods for mutagenicity prediction for the Hansen et al. benchmark dataset with an area under the receiver operating characteristic curve of 0.93. More importantly, our framework shows how combining features could benefit model accuracy improvements.
利用机器学习评估化合物的突变性是药物发现和开发过程中的一项重要活动。传统的诱变检测方法,如Ames试验,价格昂贵,耗时费力。在这种情况下,预测具有高准确性的化合物致突变性的计算机方法是重要的。最近,机器学习(ML)模型被越来越多地用于提高诱变预测的准确性。虽然这些模型在实践中使用,但这些模型的准确性还有进一步提高的余地。我们假设选择正确的特征来训练模型可以进一步提高准确性。我们系统地考虑和评估对模型准确性有最大影响的新结构和分子特征的组合。我们针对多个分类模型(从经典ML模型到深度神经网络模型)严格评估这些特征。使用5倍和10倍交叉验证评估了模型的性能,我们表明,我们使用分子结构、分子特性和结构警报作为特征集的方法成功地优于Hansen等基准数据集的最先进的诱变性预测方法,其接收器工作特征曲线下的面积为0.93。更重要的是,我们的框架展示了如何结合特征来提高模型的准确性。
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引用次数: 1
A novel in vitro 3D model of the human bone marrow to bridge the gap between in vitro and in vivo genotoxicity testing. 一种新的体外人类骨髓三维模型,以弥合体外和体内遗传毒性测试之间的差距。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-04 DOI: 10.1093/mutage/geac009
Alexander R Vernon,Roy M Pemberton,H Ruth Morse
The regulatory 2D in vitro micronucleus (MN) assay is part of a battery of tests, used to test for genotoxicity of new and existing compounds before they are assessed in vivo (ICH S2). The 2D MN assay consists of a monolayer of cells, whereas the in vivo bone marrow (BM) setting comprises a multicellular environment within a three-dimensional extracellular matrix. Although the in vitro MN assay follows a robust protocol set out by the Organisation for Economic Co-operation and Development (OECD) to comply with regulatory bodies, some compounds have been identified as negative genotoxicants within the in vitro MN assay but marginally positive when assessed in vivo. The glucocorticoids, which are weakly positive in vivo, have generally been suggested to pose no long-term carcinogenic risk; however, for novel compounds of unknown activity, improved prediction of genotoxicity is imperative. To help address this observation, we describe a novel 3D in vitro assay which aims to replicate the results seen within the in vivo BM microenvironment. AlgiMatrix scaffolds were optimized for seeding with HS-5 human BM stromal cells as a BM microenvironment, to which the human lymphoblast cell line TK6 was added. An MN assay was performed aligning with the 2D regulatory assay protocol. Utilizing this novel 3D in vitro model of the BM, known genotoxicants (mitomycin C, etoposide, and paclitaxel), a negative control (caffeine), and in vivo positive glucocorticoids (dexamethasone and prednisolone) were investigated for the induction of MN. It was found, in agreement with historical in vivo data, that the model could accurately predict the in vivo outcome of the glucocorticoids, unlike the regulatory 2D in vitro MN assay. These preliminary results suggest our 3D MN assay may better predict the outcome of in vivo MN tests, compared with the standard 2D assay.
调控2D体外微核(MN)测定是一系列测试的一部分,用于在体内评估新化合物和现有化合物之前测试其遗传毒性(ICH S2)。二维骨髓分析包括单层细胞,而体内骨髓(BM)环境包括三维细胞外基质内的多细胞环境。尽管体外MN测定遵循经济合作与发展组织(OECD)制定的严格协议,以符合监管机构的要求,但一些化合物在体外MN测定中被确定为阴性基因毒物,但在体内评估时却略微呈阳性。糖皮质激素在体内呈弱阳性,一般认为不会造成长期致癌风险;然而,对于未知活性的新化合物,改进遗传毒性预测是必要的。为了帮助解决这一观察,我们描述了一种新的3D体外实验,旨在复制在体内BM微环境中看到的结果。对AlgiMatrix支架进行优化,以HS-5人骨髓基质细胞作为骨髓微环境,在基质中添加人淋巴母细胞TK6。根据2D调节试验方案进行MN试验。利用这种新型的BM体外3D模型,研究了已知的基因毒物(丝裂霉素C、依托泊苷和紫杉醇)、阴性对照(咖啡因)和体内阳性糖皮质激素(地塞米松和强的松龙)对MN的诱导作用。研究发现,与历史体内数据一致,该模型可以准确预测糖皮质激素的体内结果,而不像2D体外MN测定。这些初步结果表明,与标准的2D分析相比,我们的3D MN分析可以更好地预测体内MN测试的结果。
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引用次数: 2
The role of human umbilical cord mesenchymal stem cells-derived exosomal microRNA-431-5p in survival and prognosis of colorectal cancer patients. 人脐带间充质干细胞来源的外泌体microRNA-431-5p在结直肠癌患者生存和预后中的作用
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-05-04 DOI: 10.1093/mutage/geac007
Muwen Qu, Junyi Li, Zifu Hong, Fei Jia, Yinghua He, Lingling Yuan

We aim to discuss the role of miR-431-5p in colorectal cancer (CRC) progression via regulating peroxiredoxin 1 (PRDX1). miR-431-5p and PRDX1 expression were detected in CRC tissues and cells, and the relationship between miR-431-5p expression and prognosis of CRC patients was analyzed. Exosomes were extracted from human umbilical cord mesenchymal stem cells (hUCMSCs) and co-cultured with LoVo cells. MTT assay, flow cytometry and Transwell assay were implemented to test cell viability, apoptosis and invasion and migration ability, respectively. The tumor growth was determined as well, and the binding relation between miR-431-5p and PRDX1 was confirmed. miR-431-5p was downregulated and PRDX1 was upregulated in CRC, and miR-431-5p downregulation was associated with poor prognosis. hUCMSC-Exos suppressed the malignant behaviors of LoVo cells, and overexpression of miR-431-5p further aggravated the inhibitory effect of hUCMSC-Exos on LoVo cells. hUCMSC-Exos inhibited PRDX1 expression via miR-431-5p. PRDX1 was targeted by miR-431-5p. miR-431-5p serves as a prognostic biomarker in CRC, and hUCMSC-Exos transfer of miR-431-5p decelerates CRC cell growth by inhibiting PRDX1.

我们的目的是讨论miR-431-5p通过调节过氧化物还氧蛋白1 (PRDX1)在结直肠癌(CRC)进展中的作用。在结直肠癌组织和细胞中检测miR-431-5p和PRDX1的表达,分析miR-431-5p表达与结直肠癌患者预后的关系。从人脐带间充质干细胞(hUCMSCs)中提取外泌体并与LoVo细胞共培养。采用MTT法、流式细胞术和Transwell法分别检测细胞活力、细胞凋亡和侵袭迁移能力。同时测定肿瘤生长情况,证实miR-431-5p与PRDX1的结合关系。在结直肠癌中miR-431-5p下调,PRDX1上调,miR-431-5p下调与预后不良相关。hUCMSC-Exos抑制LoVo细胞的恶性行为,过表达miR-431-5p进一步加重了hUCMSC-Exos对LoVo细胞的抑制作用。hUCMSC-Exos通过miR-431-5p抑制PRDX1的表达。PRDX1被miR-431-5p靶向。miR-431-5p作为CRC的预后生物标志物,并且miR-431-5p的hucscs - exos转移通过抑制PRDX1来减缓CRC细胞的生长。
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引用次数: 8
The mitochondrial poison carbonyl cyanide 3-chlorophenyl hydrazone (CCCP) induces aneugenic effects in primary human fibroblasts: a possible link between mitochondrial dysfunction and chromosomal loss. 线粒体毒性羰基氰化物3-氯苯基腙(CCCP)在原代人成纤维细胞中诱导非优生效应:线粒体功能障碍与染色体丢失之间的可能联系。
IF 2.7 4区 医学 Q3 GENETICS & HEREDITY Pub Date : 2022-04-20 DOI: 10.1093/mutage/geac008
F. Marcon, Francesca De Battistis, E. Siniscalchi, R. Crebelli, R. Meschini
An association between proper chromosome segregation and intact mitochondria has been extensively reported. This could be related to the effects on the progression of cell division of altered energy production, increased oxidative stress, and deregulated calcium homeostasis. However, evidence for a direct relationship is still lacking. The present study was aimed at investigating the possible effect of mitochondrial dysfunction on chromosomal instability as detected in primary human cells treated with the mitochondrial poison carbonyl cyanide 3-chlorophenyl hydrazone (CCCP). Chromosome instability was analyzed in anaphase and interphase cells to follow the fate of chromosome damage during the progression of mitosis and the subsequent cell cycle. Through the combination of cytogenetic approaches and molecular analyses, i.e. morphological cell analysis, formation and characterization of micronucleus content, Comet assay, and gene expression, it was demonstrated that the prevalent DNA damage associated with CCCP treatment was the induction of chromosome loss, while primary DNA damage was not detected. No alterations in the shape of anaphase cells were observed nor induction of multipolar spindles. The proper activation of mitotic checkpoint was maintained. A linear dose-response curve characterizing the CCCP effects suggested that multiple cellular targets could be affected by the CCCP-induced mitochondrial dysfunctions triggering aneuploidy. Conversely, a steep increase was induced by the positive control vinblastine, known to have tubulin as a unique target. In addition, the effect of CCCP on mitochondrial function was demonstrated by changes in mitochondrial DNA copy number and in the expression of genes involved in mitochondrial maintenance. Overall, these results indicate that the mitochondrial poison CCCP may induce aneugenic effects.
正确的染色体分离和完整的线粒体之间的关系已被广泛报道。这可能与能量产生改变、氧化应激增加和钙稳态失调对细胞分裂进程的影响有关。然而,直接关系的证据仍然缺乏。本研究旨在探讨线粒体功能障碍对线粒体毒性羰基氰化3-氯苯基腙(CCCP)处理的人原代细胞染色体不稳定性的可能影响。染色体不稳定性分析在细胞的后期和间期,以跟踪染色体损伤的命运在有丝分裂的进程和随后的细胞周期。通过细胞遗传学方法和分子分析相结合,即形态学细胞分析,微核含量的形成和表征,彗星试验和基因表达,证明了CCCP处理相关的普遍DNA损伤是诱导染色体丢失,而未检测到原发性DNA损伤。未观察到后期细胞形状的改变,也未观察到多极纺锤体的诱导。有丝分裂检查点的正常激活得以维持。表征CCCP效应的线性剂量-反应曲线表明,CCCP诱导的线粒体功能障碍可能会影响多个细胞靶点,从而引发非整倍体。相反,阳性对照长春花碱(已知以微管蛋白为独特靶点)诱导了急剧增加。此外,CCCP对线粒体功能的影响通过改变线粒体DNA拷贝数和参与线粒体维持的基因表达得到证实。总之,这些结果表明线粒体毒性CCCP可能引起非优生效应。
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引用次数: 0
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Mutagenesis
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