Pub Date : 2026-01-31DOI: 10.1038/s41380-025-03433-y
Elisa Varella-Branco, Elizabeth Shephard, Victor H C Toledo, Igor C Ramos, Ellen C M Lacerda, Laura L M Carvalho, Marcella A Fiuza, Mayara Paschalidis, Claudia I S Costa, Ana C S Girardi, Ana C V Krepischi, Erasmo B Casella, Guilherme Polanczyk, Karina Griesi-Oliveira, Fabio Papes, Lucas Alvizi, Gerson S Kobayashi, Maria Rita Dos Santos E Passos Bueno
Phelan-McDermid Syndrome (PMS), primarily linked to SHANK3 haploinsufficiency, presents with complex neurodevelopmental features, including developmental regression, whose underlying mechanisms are poorly understood. This study investigated the impact of SHANK3 disruption across multiple levels, from gene expression in patient-derived iPSC neurons to in vivo brain network activity. RNA-sequencing of iPSC-derived neurons from PMS patients with SHANK3 disruption only (n = 9) and controls (n = 7) revealed dysregulation in differential gene expression and co-expression modules linked to cell cycle, RNA metabolism, and metabolic pathways in SHANK3-mutated neurons. All modules were correlated with PMS regression and enriched for genes implicated in neurodevelopmental or neurodegenerative disorders, such as autism, ADHD, and Alzheimer's disease. At the cellular level, SHANK3-mutated cultures exhibited increased proliferation of neural progenitors and intermediate progenitor markers. Differentiated neurons showed reduced morphological complexity, specific changes in postsynaptic marker density and puncta size, and electrophysiological characteristics suggestive of neuronal hyperexcitability. Electroencephalography (EEG) in a PMS patient cohort (n = 20) compared to controls (n = 30) demonstrated hyperconnectivity and excessive high-frequency oscillations, suggesting altered neural network dynamics. In summary, the use of different analytical approaches suggested that SHANK3 haploinsufficiency disrupts neurodevelopmental trajectories and revealed that regression in PMS may share common genes and pathways with neurodegeneration. We also characterized molecular and neurophysiological markers that can be useful in therapeutic protocols for PMS.
{"title":"\"SHANK3 deficiency alters early progenitor dynamics and reveals shared pathways with neurodegeneration\".","authors":"Elisa Varella-Branco, Elizabeth Shephard, Victor H C Toledo, Igor C Ramos, Ellen C M Lacerda, Laura L M Carvalho, Marcella A Fiuza, Mayara Paschalidis, Claudia I S Costa, Ana C S Girardi, Ana C V Krepischi, Erasmo B Casella, Guilherme Polanczyk, Karina Griesi-Oliveira, Fabio Papes, Lucas Alvizi, Gerson S Kobayashi, Maria Rita Dos Santos E Passos Bueno","doi":"10.1038/s41380-025-03433-y","DOIUrl":"https://doi.org/10.1038/s41380-025-03433-y","url":null,"abstract":"<p><p>Phelan-McDermid Syndrome (PMS), primarily linked to SHANK3 haploinsufficiency, presents with complex neurodevelopmental features, including developmental regression, whose underlying mechanisms are poorly understood. This study investigated the impact of SHANK3 disruption across multiple levels, from gene expression in patient-derived iPSC neurons to in vivo brain network activity. RNA-sequencing of iPSC-derived neurons from PMS patients with SHANK3 disruption only (n = 9) and controls (n = 7) revealed dysregulation in differential gene expression and co-expression modules linked to cell cycle, RNA metabolism, and metabolic pathways in SHANK3-mutated neurons. All modules were correlated with PMS regression and enriched for genes implicated in neurodevelopmental or neurodegenerative disorders, such as autism, ADHD, and Alzheimer's disease. At the cellular level, SHANK3-mutated cultures exhibited increased proliferation of neural progenitors and intermediate progenitor markers. Differentiated neurons showed reduced morphological complexity, specific changes in postsynaptic marker density and puncta size, and electrophysiological characteristics suggestive of neuronal hyperexcitability. Electroencephalography (EEG) in a PMS patient cohort (n = 20) compared to controls (n = 30) demonstrated hyperconnectivity and excessive high-frequency oscillations, suggesting altered neural network dynamics. In summary, the use of different analytical approaches suggested that SHANK3 haploinsufficiency disrupts neurodevelopmental trajectories and revealed that regression in PMS may share common genes and pathways with neurodegeneration. We also characterized molecular and neurophysiological markers that can be useful in therapeutic protocols for PMS.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146097310","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-31DOI: 10.1038/s41380-026-03444-3
Cameron James Watson, Johan Zvrskovec, Giuseppe Pierpaolo Merola, Lachlan Gilchrist, Senta M Haussler, Miryam Schattner, Chris Wai Hang Lo, Gerome Breen, Robin M Murray, Cathryn Μ Lewis, Evangelos Vassos
The genetic relationship between schizophrenia, IQ, and educational attainment (EA) is complex. Schizophrenia polygenic scores (PGS) are linked to lower IQ, whilst higher IQ-PGS correlates with reduced schizophrenia risk. Paradoxically, genetic predisposition to higher EA has been associated with increased schizophrenia risk, a relationship potentially confounded by genetic overlap between schizophrenia and bipolar disorder. Using a latent-variable Genomic Structural Equation Modelling approach to GWAS summary statistics for schizophrenia and bipolar disorder, we dissected the genetic contribution to schizophrenia, identifying 63 SNPs specifically associated with schizophrenia (SZspecific) and 78 shared with bipolar disorder (PSYshared). Both schizophrenia (rg = -0.22) and SZspecific (rg = -0.24) were genetically negatively correlated with IQ; correlations between bipolar disorder and PSYshared with IQ were less pronounced (both rg = -0.07). Schizophrenia exhibited no correlation with EA, yet the latent variables demonstrated divergent relationships; PSYshared was positively correlated (rg = 0.11), whereas SZspecific was negatively correlated (rg = -0.06). PGS analyses in the UK Biobank (n = 381,688), corroborated these divergent relationships, SZspecific-PGS was negatively associated with EA (β = -0.13, p < 2e-16), whereas the PSYshared-PGS was positively associated (β = 0.14, p < 2e-16). Mendelian randomisation provided additional support but also confirmed the presence of genetic pleiotropy. These findings underscore the utility of genetic methods in dissecting the heterogeneity of neuropsychiatric disorders, supporting the existence of two possible pathways to schizophrenia: one shared with bipolar disorder and another with greater neurocognitive impact.
{"title":"Splitting schizophrenia: divergent cognitive and educational outcomes revealed by genomic structural equation modelling.","authors":"Cameron James Watson, Johan Zvrskovec, Giuseppe Pierpaolo Merola, Lachlan Gilchrist, Senta M Haussler, Miryam Schattner, Chris Wai Hang Lo, Gerome Breen, Robin M Murray, Cathryn Μ Lewis, Evangelos Vassos","doi":"10.1038/s41380-026-03444-3","DOIUrl":"https://doi.org/10.1038/s41380-026-03444-3","url":null,"abstract":"<p><p>The genetic relationship between schizophrenia, IQ, and educational attainment (EA) is complex. Schizophrenia polygenic scores (PGS) are linked to lower IQ, whilst higher IQ-PGS correlates with reduced schizophrenia risk. Paradoxically, genetic predisposition to higher EA has been associated with increased schizophrenia risk, a relationship potentially confounded by genetic overlap between schizophrenia and bipolar disorder. Using a latent-variable Genomic Structural Equation Modelling approach to GWAS summary statistics for schizophrenia and bipolar disorder, we dissected the genetic contribution to schizophrenia, identifying 63 SNPs specifically associated with schizophrenia (SZ<sub>specific</sub>) and 78 shared with bipolar disorder (PSY<sub>shared</sub>). Both schizophrenia (rg = -0.22) and SZ<sub>specific</sub> (rg = -0.24) were genetically negatively correlated with IQ; correlations between bipolar disorder and PSY<sub>shared</sub> with IQ were less pronounced (both rg = -0.07). Schizophrenia exhibited no correlation with EA, yet the latent variables demonstrated divergent relationships; PSY<sub>shared</sub> was positively correlated (rg = 0.11), whereas SZ<sub>specific</sub> was negatively correlated (rg = -0.06). PGS analyses in the UK Biobank (n = 381,688), corroborated these divergent relationships, SZ<sub>specific</sub>-PGS was negatively associated with EA (β = -0.13, p < 2e-16), whereas the PSY<sub>shared</sub>-PGS was positively associated (β = 0.14, p < 2e-16). Mendelian randomisation provided additional support but also confirmed the presence of genetic pleiotropy. These findings underscore the utility of genetic methods in dissecting the heterogeneity of neuropsychiatric disorders, supporting the existence of two possible pathways to schizophrenia: one shared with bipolar disorder and another with greater neurocognitive impact.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146096923","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-31DOI: 10.1038/s41380-026-03450-5
Vicent Llorca-Bofí, Eduard Parellada, Constanza Morén, Carl M Sellgren, Miquel Bioque
Schizophrenia, a chronic psychiatric disorder, has prompted extensive research into its immunological aspects. Studies in genetics, epidemiology, and treatment have revealed immune changes associated with schizophrenia, including shifts in cytokine levels and microglial reactivity within the central nervous system (CNS). However, the term "neuroinflammation" has been used to describe these findings despite inconsistent classical markers, potentially oversimplifying the complex role of immune mediators in neurodevelopment and brain homeostasis. In this paper, we critically examine the limitations of applying "neuroinflammation" to describe immune changes in schizophrenia, focusing on its four classical hallmarks: elevated cytokines, microglial reactivity, peripheral immune cell infiltration, and neurodegeneration. While some alterations in these markers are reported, many findings fall within clinical norms or likely contribute to neurodevelopment, suggesting that the term "neuroinflammation" may misrepresent their role. Instead, we propose using alternative terminology that reflects the broader spectrum of CNS immune responses, both inflammatory and non-inflammatory, and invite the scientific community to join this dialogue to refine terminology. By reframing immune alterations in schizophrenia, we aim to promote accuracy and consistency across medical disciplines, ensuring terminology that accurately represents the underlying biology. This, in turn, will improve communication among researchers and clinicians.
{"title":"Neuroinflammation: an unfortunate term to describe schizophrenia.","authors":"Vicent Llorca-Bofí, Eduard Parellada, Constanza Morén, Carl M Sellgren, Miquel Bioque","doi":"10.1038/s41380-026-03450-5","DOIUrl":"https://doi.org/10.1038/s41380-026-03450-5","url":null,"abstract":"<p><p>Schizophrenia, a chronic psychiatric disorder, has prompted extensive research into its immunological aspects. Studies in genetics, epidemiology, and treatment have revealed immune changes associated with schizophrenia, including shifts in cytokine levels and microglial reactivity within the central nervous system (CNS). However, the term \"neuroinflammation\" has been used to describe these findings despite inconsistent classical markers, potentially oversimplifying the complex role of immune mediators in neurodevelopment and brain homeostasis. In this paper, we critically examine the limitations of applying \"neuroinflammation\" to describe immune changes in schizophrenia, focusing on its four classical hallmarks: elevated cytokines, microglial reactivity, peripheral immune cell infiltration, and neurodegeneration. While some alterations in these markers are reported, many findings fall within clinical norms or likely contribute to neurodevelopment, suggesting that the term \"neuroinflammation\" may misrepresent their role. Instead, we propose using alternative terminology that reflects the broader spectrum of CNS immune responses, both inflammatory and non-inflammatory, and invite the scientific community to join this dialogue to refine terminology. By reframing immune alterations in schizophrenia, we aim to promote accuracy and consistency across medical disciplines, ensuring terminology that accurately represents the underlying biology. This, in turn, will improve communication among researchers and clinicians.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146097238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-31DOI: 10.1038/s41380-026-03466-x
Budhaditya Basu, Nicole M Breese, Sal Lombardi, Hui Wang, Xueshu Li, Destiny Tiburcio, Zachary Niemasz, Stacy E Beyer, Laura E Dean, Rachel F Marek, Michal Toborek, Hans-Joachim Lehmler, Snehajyoti Chatterjee
Polychlorinated biphenyls (PCBs) are highly stable synthetic organic compounds that are present in air, water, and soil. PCBs have been identified in post-mortem human brains, indicating a possible link between environmental factors and disease risk. Research has revealed an association between PCB exposure and cognitive decline. Therefore, it is crucial to evaluate how PCB mixtures relevant to humans affect brain function and cognition. To investigate the effects of PCBs on memory and transcriptomic profiles, we exposed male C57BL/6 J mice orally to a synthetic PCB mixture daily. After seven weeks of exposure, the adult mice were assessed in a spatial object recognition task (SOR) to evaluate long-term spatial memory. Our findings showed that mice exposed to PCBs exhibited deficits in long-term spatial memory. To examine the molecular effects of PCB on the brain, we used a spatial transcriptomics technique to analyze gene expression changes in five brain regions: the hippocampus, neocortex, thalamus, caudal putamen, and fiber tracts. Our analysis of spatial gene expression revealed the molecular signatures influenced by PCB in these susceptible brain regions of mice. Network analysis suggests that these changes are associated with higher chlorinated PCBs present in the brain. Additionally, we show that PCB exposure disrupts the expression of tight junction proteins, which are crucial for maintaining the integrity of the blood-brain barrier (BBB). Thus, our results offer mechanistic insights into how PCB exposure affects brain function and cognition.
{"title":"Spatial transcriptomic profiling uncovers the molecular effects of the neurotoxicant polychlorinated biphenyls (PCBs) in the brains of adult mice.","authors":"Budhaditya Basu, Nicole M Breese, Sal Lombardi, Hui Wang, Xueshu Li, Destiny Tiburcio, Zachary Niemasz, Stacy E Beyer, Laura E Dean, Rachel F Marek, Michal Toborek, Hans-Joachim Lehmler, Snehajyoti Chatterjee","doi":"10.1038/s41380-026-03466-x","DOIUrl":"10.1038/s41380-026-03466-x","url":null,"abstract":"<p><p>Polychlorinated biphenyls (PCBs) are highly stable synthetic organic compounds that are present in air, water, and soil. PCBs have been identified in post-mortem human brains, indicating a possible link between environmental factors and disease risk. Research has revealed an association between PCB exposure and cognitive decline. Therefore, it is crucial to evaluate how PCB mixtures relevant to humans affect brain function and cognition. To investigate the effects of PCBs on memory and transcriptomic profiles, we exposed male C57BL/6 J mice orally to a synthetic PCB mixture daily. After seven weeks of exposure, the adult mice were assessed in a spatial object recognition task (SOR) to evaluate long-term spatial memory. Our findings showed that mice exposed to PCBs exhibited deficits in long-term spatial memory. To examine the molecular effects of PCB on the brain, we used a spatial transcriptomics technique to analyze gene expression changes in five brain regions: the hippocampus, neocortex, thalamus, caudal putamen, and fiber tracts. Our analysis of spatial gene expression revealed the molecular signatures influenced by PCB in these susceptible brain regions of mice. Network analysis suggests that these changes are associated with higher chlorinated PCBs present in the brain. Additionally, we show that PCB exposure disrupts the expression of tight junction proteins, which are crucial for maintaining the integrity of the blood-brain barrier (BBB). Thus, our results offer mechanistic insights into how PCB exposure affects brain function and cognition.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146096928","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-31DOI: 10.1038/s41380-026-03460-3
Onur Memetoglu, Manu S Goyal, Virginie-Anne Chouinard, Fei Du, Dost Ongur
Aerobic glycolysis (AG) refers to the preferential use of glucose through glycolysis and not oxidative phosphorylation (OxPhos) despite the presence of oxygen. Originally described in cancer cells as the Warburg effect, AG is now recognized as a broader physiological mechanism extending beyond cancer biology. This process is less efficient than OxPhos in terms of ATP yield, but supports biosynthesis, neural plasticity, oxidative stress reduction, and synaptogenesis under metabolically demanding conditions. Building on this physiological role and current findings, we propose that in schizophrenia (SZ), AG remains elevated in adulthood, likely reflecting a compensatory response to reduced brain biomass and mitochondrial dysfunction. Neuroimaging, spectroscopy, and postmortem studies link the presence of AG in the brain to impaired OxPhos, reductive stress and defective neuron-glia coupling. Oligodendrocyte dysfunction and white matter damage also additionally compromise energy homeostasis and connectivity. Though AG supports repair, its persistent activation may destabilize synaptic structures and function. This Perspective proposes that AG in SZ represents a mismatch between developmental demands and adult metabolic function, compensatory in early stages but ultimately (mal)adaptive. Understanding when, where and why AG persists may reveal new entry points for restoring energetic balance in vulnerable brain circuits.
{"title":"Aerobic glycolysis in Schizophrenia: Developmental rescue or energetic breakdown?","authors":"Onur Memetoglu, Manu S Goyal, Virginie-Anne Chouinard, Fei Du, Dost Ongur","doi":"10.1038/s41380-026-03460-3","DOIUrl":"https://doi.org/10.1038/s41380-026-03460-3","url":null,"abstract":"<p><p>Aerobic glycolysis (AG) refers to the preferential use of glucose through glycolysis and not oxidative phosphorylation (OxPhos) despite the presence of oxygen. Originally described in cancer cells as the Warburg effect, AG is now recognized as a broader physiological mechanism extending beyond cancer biology. This process is less efficient than OxPhos in terms of ATP yield, but supports biosynthesis, neural plasticity, oxidative stress reduction, and synaptogenesis under metabolically demanding conditions. Building on this physiological role and current findings, we propose that in schizophrenia (SZ), AG remains elevated in adulthood, likely reflecting a compensatory response to reduced brain biomass and mitochondrial dysfunction. Neuroimaging, spectroscopy, and postmortem studies link the presence of AG in the brain to impaired OxPhos, reductive stress and defective neuron-glia coupling. Oligodendrocyte dysfunction and white matter damage also additionally compromise energy homeostasis and connectivity. Though AG supports repair, its persistent activation may destabilize synaptic structures and function. This Perspective proposes that AG in SZ represents a mismatch between developmental demands and adult metabolic function, compensatory in early stages but ultimately (mal)adaptive. Understanding when, where and why AG persists may reveal new entry points for restoring energetic balance in vulnerable brain circuits.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146097266","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Chronic stress increases the risk of developing depression. However, the neurological mechanism by which chronic stress elicits depression remains largely unknown. Here, we identify that somatostatin-positive neurons in the zona incerta (ZISST neurons) regulate chronic restraint stress response and are involved in regulating depression-like behaviors. Activation of the ZISST neurons produces antidepressant-like behaviors, which is triggered by the direct input from the vesicular glutamate transporter 2-positive neurons in the anterior cingulate cortex (ACC). Inactivation of ZISST neurons produces depression-like behaviors by activating neurons in the lateral habenula (LHb). Interestingly, (2 R,6 R)-hydroxynorketamine (HNK) alleviates chronic restraint stress-induced depression-like behaviors through the activation of ZISST neurons. Collectively, these findings reveal a critical role of ZISST neurons in encoding chronic stress-induced depression and suggest that activating ZISST neurons may offer a new strategy for treating depression.
{"title":"Somatostatin-expressing neurons in the zona incerta regulate chronic stress response and modulate depression-like behaviors","authors":"Hongling Guo, Tahir Ali, Qixing Yang, Jianxun Xia, Yanhua Luo, Jiayan Ren, Zuxin Chen, Ying Han, Shupeng Li","doi":"10.1038/s41380-026-03446-1","DOIUrl":"https://doi.org/10.1038/s41380-026-03446-1","url":null,"abstract":"Chronic stress increases the risk of developing depression. However, the neurological mechanism by which chronic stress elicits depression remains largely unknown. Here, we identify that somatostatin-positive neurons in the zona incerta (ZISST neurons) regulate chronic restraint stress response and are involved in regulating depression-like behaviors. Activation of the ZISST neurons produces antidepressant-like behaviors, which is triggered by the direct input from the vesicular glutamate transporter 2-positive neurons in the anterior cingulate cortex (ACC). Inactivation of ZISST neurons produces depression-like behaviors by activating neurons in the lateral habenula (LHb). Interestingly, (2 R,6 R)-hydroxynorketamine (HNK) alleviates chronic restraint stress-induced depression-like behaviors through the activation of ZISST neurons. Collectively, these findings reveal a critical role of ZISST neurons in encoding chronic stress-induced depression and suggest that activating ZISST neurons may offer a new strategy for treating depression.","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":"184 1","pages":""},"PeriodicalIF":11.0,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146089567","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Depression leads to complex changes in protein regulation in the brain and other tissues. Reproducibility and data integration remain challenges in this field. We systematically integrated proteomic data from our previous established database Pro-MENDA, encompassing brain, cerebrospinal fluid (CSF), blood, and urine samples from patients with depression. Using a vote-counting statistics to assess consistency of protein expression changes across studies, we identified 2094 different expression proteins from 1804 samples. Functional characterization included Gene Ontology, KEGG pathway enrichment, protein-protein interaction analysis, and post-translational modification. In brain, we observed changes in proteins related to synaptic function and energy metabolism, such as Glial fibrillary acidic protein (GFAP) and Histidine triad nucleotide-binding protein 1 (HINT1). These changes suggest issues with oxidative phosphorylation and synaptic activity. The CSF and blood revealed immune-inflammatory markers like Afamin (AFM) and Serpin Family F Member 1 (SERPINF1), while urine analysis showed signs of neutrophil activation. We also identified 13 shared proteins across brain, CSF, and blood, including Clusterin (CLU), that link complement and coagulation, and reactive oxygen pathways. In this protein-protein interaction network of brain, proteins related to cell adhesion, respiration, neuron and synapse are significantly enriched. Post-translational modifications, particularly phosphorylation, were common. Our findings highlight systemic protein dysregulation in depression. This connects brain and peripheral mechanisms, offering insights for identifying multi-tissue biomarkers and developing targeted therapies.
抑郁症会导致大脑和其他组织中蛋白质调节的复杂变化。再现性和数据集成仍然是该领域的挑战。我们系统地整合了先前建立的Pro-MENDA数据库中的蛋白质组学数据,包括抑郁症患者的脑、脑脊液(CSF)、血液和尿液样本。使用投票计数统计来评估研究中蛋白质表达变化的一致性,我们从1804个样本中鉴定出2094种不同的表达蛋白。功能鉴定包括基因本体、KEGG通路富集、蛋白相互作用分析和翻译后修饰。在大脑中,我们观察到突触功能和能量代谢相关蛋白的变化,如胶质纤维酸性蛋白(GFAP)和组氨酸三联体核苷酸结合蛋白1 (HINT1)。这些变化表明与氧化磷酸化和突触活性有关。CSF和血液显示免疫炎症标志物,如Afamin (AFM)和Serpin Family F Member 1 (serinf1),而尿液分析显示中性粒细胞活化的迹象。我们还在大脑、脑脊液和血液中发现了13种共有的蛋白质,包括连接补体和凝血途径的Clusterin (CLU)和活性氧途径。在大脑的蛋白-蛋白相互作用网络中,与细胞粘附、呼吸、神经元和突触相关的蛋白显著富集。翻译后修饰,特别是磷酸化,是常见的。我们的发现强调了抑郁症的全身性蛋白质失调。这连接了大脑和外周机制,为识别多组织生物标志物和开发靶向治疗提供了见解。
{"title":"Differential protein network and biological functions atlas from multi-tissue proteomics in patients with depression.","authors":"Yajie Xiang, Xiaoyan Du, Hongmei Yang, Peng Wang, Bangmin Yin, Zhengyang Wang, Haiyang Wang, Lanxiang Liu, Hanping Zhang, Yikun Ren, Xiangyu Chen, Yi Ren, Wei Li, Peng Xie","doi":"10.1038/s41380-026-03443-4","DOIUrl":"https://doi.org/10.1038/s41380-026-03443-4","url":null,"abstract":"<p><p>Depression leads to complex changes in protein regulation in the brain and other tissues. Reproducibility and data integration remain challenges in this field. We systematically integrated proteomic data from our previous established database Pro-MENDA, encompassing brain, cerebrospinal fluid (CSF), blood, and urine samples from patients with depression. Using a vote-counting statistics to assess consistency of protein expression changes across studies, we identified 2094 different expression proteins from 1804 samples. Functional characterization included Gene Ontology, KEGG pathway enrichment, protein-protein interaction analysis, and post-translational modification. In brain, we observed changes in proteins related to synaptic function and energy metabolism, such as Glial fibrillary acidic protein (GFAP) and Histidine triad nucleotide-binding protein 1 (HINT1). These changes suggest issues with oxidative phosphorylation and synaptic activity. The CSF and blood revealed immune-inflammatory markers like Afamin (AFM) and Serpin Family F Member 1 (SERPINF1), while urine analysis showed signs of neutrophil activation. We also identified 13 shared proteins across brain, CSF, and blood, including Clusterin (CLU), that link complement and coagulation, and reactive oxygen pathways. In this protein-protein interaction network of brain, proteins related to cell adhesion, respiration, neuron and synapse are significantly enriched. Post-translational modifications, particularly phosphorylation, were common. Our findings highlight systemic protein dysregulation in depression. This connects brain and peripheral mechanisms, offering insights for identifying multi-tissue biomarkers and developing targeted therapies.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-30","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146086474","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-23DOI: 10.1038/s41380-025-03430-1
Massimiliano Orri, Ellen Christine Leth Løkkegaard, Merete Nordentoft, Annette Erlangsen
Maternal infections during pregnancy may impact offspring brain development and increase the risk of mental disorders, but their impact on suicidal behavior remains unclear. In this study, we investigated associations between maternal infections before, during, and after pregnancy and offspring suicide attempt later in life to understand the mechanisms explaining these associations. Furthermore, paternal infections during these same periods were examined to pinpoint the possible specific role of intra-uterine exposure vs. genetic and socioeconomic confounding factors. A cohort design was applied to individual-level register-based data including all persons aged 10+ years and living in Denmark in 1987-2021. Information on maternal infection (bacterial, viral, and other, as well as at different body sites) was obtained from the Medical Birth Register based of diagnoses received during hospital contacts. The main outcome was hospital presentations for suicide attempt in the offspring. Adjusted Incidence Rate Ratios (IRR) were estimated to quantify the association between exposure to maternal infections and offspring suicide attempt. Of 2,157,641 individuals (35,047,803 person-years), 38,840 (1.8%), 26,158 (1.2%), and 34,853 (1.6%), had been exposed to maternal infection during, before, and after pregnancy, respectively, while 32,275 attempted suicide. Rates among those exposed to maternal infection during pregnancy and those non-exposed were 141.2 and 90.0 per 100,000 person-years, respectively. After adjustment, individuals exposed to maternal infections during pregnancy had higher risk of suicide attempt when compared to non-exposed (IRR 1.46 [1.36-1.56]), particularly those exposed in the second and third trimesters. Elevated risks were also observed among individuals whose mothers with infections prior (incidence rate: 144.3 per 100,000; IRR 1.45 [1.33-1.57]) and after pregnancy (incidence rate: 128.3 per 100,000; IRR 1.31 [1.21-1.42]). However, no associations were found for paternal infections during, before, or after pregnancy and offspring suicide attempt. These findings show that maternal, but not paternal, infections were associated with later risk of suicide attempt in the offspring, pointing out to a possible role of the intra-uterine environment. The similar estimates obtained for exposure to maternal infections before and after pregnancy suggests that part of this risk may stem from an underlying susceptibility to infections or socioeconomic confounding factors, as well as to possible measurement errors in the onset of infections.
{"title":"Association between maternal infections during pregnancy and offspring suicide risk: A national cohort study.","authors":"Massimiliano Orri, Ellen Christine Leth Løkkegaard, Merete Nordentoft, Annette Erlangsen","doi":"10.1038/s41380-025-03430-1","DOIUrl":"https://doi.org/10.1038/s41380-025-03430-1","url":null,"abstract":"<p><p>Maternal infections during pregnancy may impact offspring brain development and increase the risk of mental disorders, but their impact on suicidal behavior remains unclear. In this study, we investigated associations between maternal infections before, during, and after pregnancy and offspring suicide attempt later in life to understand the mechanisms explaining these associations. Furthermore, paternal infections during these same periods were examined to pinpoint the possible specific role of intra-uterine exposure vs. genetic and socioeconomic confounding factors. A cohort design was applied to individual-level register-based data including all persons aged 10+ years and living in Denmark in 1987-2021. Information on maternal infection (bacterial, viral, and other, as well as at different body sites) was obtained from the Medical Birth Register based of diagnoses received during hospital contacts. The main outcome was hospital presentations for suicide attempt in the offspring. Adjusted Incidence Rate Ratios (IRR) were estimated to quantify the association between exposure to maternal infections and offspring suicide attempt. Of 2,157,641 individuals (35,047,803 person-years), 38,840 (1.8%), 26,158 (1.2%), and 34,853 (1.6%), had been exposed to maternal infection during, before, and after pregnancy, respectively, while 32,275 attempted suicide. Rates among those exposed to maternal infection during pregnancy and those non-exposed were 141.2 and 90.0 per 100,000 person-years, respectively. After adjustment, individuals exposed to maternal infections during pregnancy had higher risk of suicide attempt when compared to non-exposed (IRR 1.46 [1.36-1.56]), particularly those exposed in the second and third trimesters. Elevated risks were also observed among individuals whose mothers with infections prior (incidence rate: 144.3 per 100,000; IRR 1.45 [1.33-1.57]) and after pregnancy (incidence rate: 128.3 per 100,000; IRR 1.31 [1.21-1.42]). However, no associations were found for paternal infections during, before, or after pregnancy and offspring suicide attempt. These findings show that maternal, but not paternal, infections were associated with later risk of suicide attempt in the offspring, pointing out to a possible role of the intra-uterine environment. The similar estimates obtained for exposure to maternal infections before and after pregnancy suggests that part of this risk may stem from an underlying susceptibility to infections or socioeconomic confounding factors, as well as to possible measurement errors in the onset of infections.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-23","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146030391","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-19DOI: 10.1038/s41380-026-03445-2
Qing-Zhang Tuo, Ashley I Bush, Peng Lei
Ferroptosis is a regulated cell death driven by iron-dependent lipid peroxidation and has been implicated in major neurological diseases. The brain is enriched in polyunsaturated fatty acids (PUFAs) and iron, which makes it particularly susceptible to lipid peroxidation, leading to ferroptosis. In neurological diseases such as Alzheimer's disease (AD) and stroke, such mechanisms are dysregulated and contribute to neuronal loss. Physiologically, the lipid peroxidation resistance systems in the brain, including defenses (such as SOD, CAT, Prxs, GPxs) and repair systems (such as GPx4, FSP1), prevent ferroptosis and repair damaged phospholipid membranes. However, the efficacy of endogenous resistance systems is often compromised in pathological states, positioning exogenous antioxidants as promising therapeutic candidates. Future research could optimize the delivery of these compounds and explore new candidates that specifically target the ferroptosis signaling pathway to prevent neurodegeneration occurring in neurological diseases.
{"title":"Ferroptosis in neurological diseases: moving towards therapeutic intervention.","authors":"Qing-Zhang Tuo, Ashley I Bush, Peng Lei","doi":"10.1038/s41380-026-03445-2","DOIUrl":"https://doi.org/10.1038/s41380-026-03445-2","url":null,"abstract":"<p><p>Ferroptosis is a regulated cell death driven by iron-dependent lipid peroxidation and has been implicated in major neurological diseases. The brain is enriched in polyunsaturated fatty acids (PUFAs) and iron, which makes it particularly susceptible to lipid peroxidation, leading to ferroptosis. In neurological diseases such as Alzheimer's disease (AD) and stroke, such mechanisms are dysregulated and contribute to neuronal loss. Physiologically, the lipid peroxidation resistance systems in the brain, including defenses (such as SOD, CAT, Prxs, GPxs) and repair systems (such as GPx4, FSP1), prevent ferroptosis and repair damaged phospholipid membranes. However, the efficacy of endogenous resistance systems is often compromised in pathological states, positioning exogenous antioxidants as promising therapeutic candidates. Future research could optimize the delivery of these compounds and explore new candidates that specifically target the ferroptosis signaling pathway to prevent neurodegeneration occurring in neurological diseases.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146003861","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2026-01-19DOI: 10.1038/s41380-025-03417-y
Carlo De Donno, Juan Pablo Lopez, Malte D Luecken, Aron Kos, Elena Brivio, Joeri Bordes, Huanqing Yang, Jan M Deussing, Mathias V Schmidt, Fabian J Theis, Alon Chen
Stress-related psychiatric disorders impact the quality of life of half a billion people around the world. However, our understanding of the molecular mechanisms responsible for stress-response regulation remain unclear. Here, we report the largest and most comprehensive characterization of the adult male mouse hippocampus, under baseline and acute stress condition, using single-cell RNA sequencing. We further used genetically modified knockout lines for the glucocorticoid and mineralocorticoid receptors (GR and MR); two transcription factors which are pivotal regulators of the central stress-response. We found previously unknown, cell-type specific, molecular signatures of a single prolonged social defeat stress response and identified Nrgn and SgK1 as key regulators in stress-responsive glutamatergic neurons, oligodendrocytes, astrocytes, and endothelial cells. Intriguingly, GR or MR deletion, specifically in glutamatergic or GABAergic neurons, led to distinct and cell-type specific transcriptional signatures after stress exposure. This study significantly advances our understanding of the molecular and cellular network underlying the central response to stressful stimuli.
{"title":"Single-cell characterization of the adult male hippocampus suggests a prominent, and cell-type specific, role for Nrgn and Sgk1 in response to a social stressor.","authors":"Carlo De Donno, Juan Pablo Lopez, Malte D Luecken, Aron Kos, Elena Brivio, Joeri Bordes, Huanqing Yang, Jan M Deussing, Mathias V Schmidt, Fabian J Theis, Alon Chen","doi":"10.1038/s41380-025-03417-y","DOIUrl":"https://doi.org/10.1038/s41380-025-03417-y","url":null,"abstract":"<p><p>Stress-related psychiatric disorders impact the quality of life of half a billion people around the world. However, our understanding of the molecular mechanisms responsible for stress-response regulation remain unclear. Here, we report the largest and most comprehensive characterization of the adult male mouse hippocampus, under baseline and acute stress condition, using single-cell RNA sequencing. We further used genetically modified knockout lines for the glucocorticoid and mineralocorticoid receptors (GR and MR); two transcription factors which are pivotal regulators of the central stress-response. We found previously unknown, cell-type specific, molecular signatures of a single prolonged social defeat stress response and identified Nrgn and SgK1 as key regulators in stress-responsive glutamatergic neurons, oligodendrocytes, astrocytes, and endothelial cells. Intriguingly, GR or MR deletion, specifically in glutamatergic or GABAergic neurons, led to distinct and cell-type specific transcriptional signatures after stress exposure. This study significantly advances our understanding of the molecular and cellular network underlying the central response to stressful stimuli.</p>","PeriodicalId":19008,"journal":{"name":"Molecular Psychiatry","volume":" ","pages":""},"PeriodicalIF":10.1,"publicationDate":"2026-01-19","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"146003847","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":1,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}