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Effects of mutant huntingtin in oxytocin neurons on non-motor features of Huntington's disease. 催产素神经元中突变的亨廷顿蛋白对亨廷顿病非运动特征的影响。
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-04-01 DOI: 10.1111/nan.12891
Sofia Bergh, Sanaz Gabery, Simone Tonetto, Deniz Kirik, Åsa Petersén, Rachel Y Cheong

Background: Early non-motor features including anxiety, depression and altered social cognition are present in Huntington's disease (HD). The underlying neurobiological mechanisms are not known. Oxytocin (OXT) is involved in the regulation of emotion, social cognition and metabolism, and our previous work showed that the OXT system is affected early in HD. The aim of the study was to investigate the potential causal relationship between the selective expression of mutant huntingtin (mHTT) in OXT neurons and the development of non-motor features and neuropathology.

Methods: To express mHTT only in OXT neurons, we used a novel flex-switch adeno-associated viral vector design to selectively express either mHTT or wild-type HTT in the paraventricular nucleus of the hypothalamus using OXT-Cre-recombinase mice. We also performed a mirror experiment to selectively delete mHTT in OXT neurons using the BACHD mouse model. Mice underwent a battery of behavioural tests to assess psychiatric and social behaviours 3 months post-injection or at 2 months of age, respectively. Post-mortem analyses were performed to assess the effects on the OXT system.

Results: Our results show that selective expression of mHTT in OXT neurons was associated with the formation of mHTT inclusions and a 26% reduction of OXT-immunopositive neurons as well as increased anxiety-like behaviours compared with uninjected mice. However, selective deletion of mHTT from OXT neurons alone was not sufficient to alter the metabolic and psychiatric phenotype of the BACHD mice at this early time point.

Conclusions: Our results indicate that mHTT expression can exert cell-autonomous toxic effects on OXT neurons without affecting the non-motor phenotype at early time points in mice.

背景:亨廷顿舞蹈病(HD)的早期非运动特征包括焦虑、抑郁和社会认知改变。潜在的神经生物学机制尚不清楚。催产素(OXT)参与情绪、社会认知和代谢的调节,我们之前的研究表明,HD患者的OXT系统在早期就受到影响。本研究的目的是探讨OXT神经元中突变型亨廷顿蛋白(mHTT)的选择性表达与非运动特征和神经病理的发展之间的潜在因果关系。方法:为了仅在OXT神经元中表达mHTT,我们使用一种新的柔性开关腺相关病毒载体设计,在下丘脑室旁核中选择性地表达mHTT或野生型HTT,使用OXT- crer -recombinase小鼠。我们还利用BACHD小鼠模型进行了选择性删除OXT神经元mHTT的镜像实验。小鼠分别在注射后3个月和2个月大时接受了一系列行为测试,以评估精神和社会行为。进行死后分析以评估对OXT系统的影响。结果:我们的研究结果表明,与未注射的小鼠相比,mHTT在OXT神经元中的选择性表达与mHTT包涵体的形成、OXT免疫阳性神经元减少26%以及焦虑样行为增加有关。然而,仅从OXT神经元中选择性删除mHTT并不足以改变BACHD小鼠在这一早期时间点的代谢和精神表型。结论:我们的研究结果表明,mHTT表达可以在不影响小鼠早期非运动表型的情况下对OXT神经元产生细胞自主毒性作用。
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引用次数: 2
Issue Information 问题信息
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-04-01 DOI: 10.1111/nan.12823
No abstract is available for this article.
这篇文章没有摘要。
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引用次数: 0
Occurrence of focal myositis during Behçet's disease: The identification of a specific vasculitis-associated focal myopathy. behet病中局灶性肌炎的发生:一种特定血管炎相关局灶性肌病的鉴定
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-04-01 DOI: 10.1111/nan.12900
Laure Gallay, Arnaud Hot, Yves Allenbach, Delphine Maucort-Boulch, Cloe Comarmond, Cindy Marques, Laurent Perard, Anne Simon, Kuberaka Mariampillai, Patrice Cacoub, Laure Mery-Bossard, Pascal Cathebras, Leonard Feasson, Alice Berezne, Chafika Morati, Lola Lessard, Marie Faruch, Nathalie Streichenberger, David Saadoun

Aims: This study aimed to report the association of focal myositis (FM) and Behçet's disease (BD) and to analyse the main characteristics of such an association.

Methods: This is a retrospective multicentre study of patients with BD and FM (BD + FM+ group) and those without FM (BD - FM+ group). Clinical, laboratory, radiological, pathological, treatment and outcome data were analysed.

Results: The BD + FM+ group included 10 patients; the median [interquartile range] age at BD diagnosis was 25 [16-35] years, and at FM diagnosis, it was 30 [26-42] years. The diagnosis of BD preceded FM in the majority of cases (n = 8/10). FM occurrence was associated with BD flare-ups in three cases. The creatine kinase levels remained normal or slightly increased. Histological analyses identified relatively preserved muscle tissue, associated with vasculitis (n = 5/6). All patients required treatment; most patients relapsed (n = 9/10). The BD - FM+ group included 35 patients. A comparison of the groups identified a trend towards a younger median age at diagnosis of FM among those with BD (p = 0.063) and more frequent focal muscle swelling in the BD + FM+ group (p = 0.029). The pathological analysis identified significantly less frequent muscle alterations in the BD + FM+ group (muscle fibre size heterogeneity, p = 0.021; necrosis, p = 0.007; and fibrosis, p = 0.027). BD + FM+ patients had a higher frequency of relapse (p = 0.003) and systematic treatment (p = 0.042).

Conclusions: FM occurring during BD appears to be part of the systemic vasculitis process and presents as a vasculitis-associated focal myopathy with a specific clinico-histological pattern. Patients with this association require long-term follow-up and adapted management. This case series also highlights the need for research on BD diagnostic criteria in cases of FM.

目的:本研究旨在报道局灶性肌炎(FM)与behet病(BD)的关联,并分析这种关联的主要特征。方法:这是一项回顾性的多中心研究,研究对象为双相和调频患者(BD + FM+组)和无调频患者(BD - FM+组)。分析临床、实验室、放射学、病理学、治疗和结局资料。结果:BD + FM+组10例;诊断为双相障碍时的中位年龄为25[16-35]岁,诊断为FM时的中位年龄为30[26-42]岁。大多数病例诊断为BD先于FM (n = 8/10)。在3例中,FM的发生与BD发作有关。肌酸激酶水平保持正常或略有升高。组织学分析发现相对保存的肌肉组织与血管炎相关(n = 5/6)。所有患者都需要治疗;大多数患者复发(n = 9/10)。BD - FM+组35例。两组比较发现,在BD患者中,FM诊断的中位年龄更年轻(p = 0.063),而BD + FM+组更频繁地出现局灶性肌肉肿胀(p = 0.029)。病理分析发现,BD + FM+组肌肉改变的频率明显降低(肌纤维大小异质性,p = 0.021;坏死,p = 0.007;纤维化,p = 0.027)。BD + FM+患者复发率较高(p = 0.003),系统治疗的患者复发率较高(p = 0.042)。结论:BD期间发生的FM似乎是全身性血管炎过程的一部分,表现为血管炎相关的局灶性肌病,具有特定的临床组织学模式。有这种关联的患者需要长期随访和适应管理。该病例系列也强调了研究FM病例双相障碍诊断标准的必要性。
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引用次数: 0
Cover Image, Volume 49, Issue 2 封面图片,第49卷,第2期
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-03-23 DOI: 10.1111/nan.12901
Chia-Wei Huang, Kuang-Yung Lee, Peng-Tzu Lin, Fang-Shin Nian, Haw-Yuan Cheng, Chien-Hui Chang, Cheng-Yen Liao, Yen-Lin Su, Carol Seah, Ching Li, Yu-Fu Chen, Mei-Hsuan Lee, Jin-Wu Tsai
The cover image is based on the Original Article Muscleblind-Like 2 knockout shifts adducin 1 isoform expression and alters dendritic spine dynamics of cortical neurons during brain development by Chia-Wei Huang et al., https://doi.org/10.1111/nan.12890.
封面图片基于黄家伟等人(https://doi.org/10.1111/nan.12890)发表的文章《Muscleblind-Like 2敲除可改变脑发育过程中内闭蛋白1异构体的表达并改变皮层神经元的树突棘动力学》。
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引用次数: 0
124th Meeting of the British Neuropathological Society The View, Royal College of Surgeons of England, Lincoln's Inn Fields, London 英国神经病理学会第124届会议the View,英国皇家外科医学院,林肯酒店,伦敦
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-27 DOI: 10.1111/nan.12881
Z. Jaunmuktane, Sebastian, Brandner, G. Cruickshank
SESSION I Chair: Caroline Sewry, RJAH Orthopaedic Hospital, Salford Royal Hospital & UCL-GOSH Dubowitz Neuromuscular Centre, UK 13:05–13:35 Muscle cell fusion during disease and opportunities for therapies Doug Millay, Cincinnati Children’s Hospital Medical Center, USA 13:35–14:05 The transcription factor Nfix in skeletal muscle development and muscular dystrophies Graziella Messina, University of Milan, Italy 14:05–14:35 Mechanisms of muscle mass regulation in health and disease Marco Sandri, University of Padova, Italy 14:35–15:00 Coffee break
第一届会议主席:Caroline Sewry, RJAH骨科医院,Salford皇家医院和UCL-GOSH Dubowitz神经肌肉中心,英国13:05-13:35疾病期间的肌肉细胞融合和治疗机会Doug Millay,美国辛辛那提儿童医院医学中心,美国13:35-14:05转录因子Nfix在骨骼肌发育和肌肉营养不良中的作用意大利帕多瓦大学14:35-15:00咖啡休息时间
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引用次数: 0
Poster Abstracts 海报摘要
2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-27 DOI: 10.1111/nan.12883
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引用次数: 0
Rapid bacterial identification from formalin-fixed paraffin-embedded neuropathology specimens using 16S rDNA nanopore sequencing. 采用16S rDNA纳米孔测序技术对福尔马林固定石蜡包埋神经病理标本进行快速细菌鉴定。
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-01 DOI: 10.1111/nan.12871
Anne Albers, Dorothee Cäcilia Spille, Eric Suero-Molina, Frieder Schaumburg, Walter Stummer, Werner Paulus, Christian Thomas
Bacterial infections of the central nervous system (CNS) can be severe, life-threatening diseases. Early detection of causative pathogens is crucial for the rapid administration of a tailored antibiotic regime. However, microbiological cultures are negative in one third of bacterial CNS abscesses [1], and routine neuropathology diagnostics are typically limited to histological staining techniques such as Gram or Warthin-Starry. Moreover, tissue might not have been submitted for microbiological culture at the time of surgery in cases without a preoperative suspicion of CNS infection. Molecular diagnostics using pathogen-specific PCR provides an alternative diagnostic approach and has been successfully applied to formalin-fixed paraffinembedded (FFPE) tissue samples [2] but is hypothesis driven and thus requires a priori suspicion of the causative pathogen. Metagenomic sequencing of the bacterial 16S rRNA gene represents an unbiased alternative and has been successfully applied to study the bacterial metagenome of brain abscesses based on DNA extracted from unfixed specimens [3, 4]. Here, we introduce a rapid and scalable approach for bacterial pathogen detection from FFPE specimens using nanopore sequencing of 16S rDNA amplicons. FFPE samples of 32 bacterial CNS infections (31 brain abscesses and 1 subdural empyema) and 3 control samples (reactive brain tissue) were retrieved from our archive. Clinical data and microbiological culture results were compiled by reviewing patient records. After DNA extraction, multiplex PCR with four primer sets covering variable regions 3–7 of the 16S rRNA gene was performed (see the supporting information). PCR products were sequenced on a nanopore Mk1c device. After basecalling, raw fastq files were uploaded on the EPI2ME platform (Metrichor Ltd., Oxford, UK), and results were loaded into the R environment for further analysis (supporting information). Raw sequencing files are available under the BioProject Accession No. PRJNA899355 (ncbi.nlm.nih.gov/bioproject/899355). The median age of the 8 females and 24 males was 57 years (range 13–84 years). Preoperatively, a diagnosis of bacterial CNS infection has been suspected in 24 patients (75%), whereas a malignant tumour was radiologically considered in six cases (19%); in two patients, the aetiology of the lesion had been unclear (Table S1). On Gram staining, bacteria were identified in 23 samples (72%). All cases had positive bacterial cultures, and 10 samples (31%) showed mixed infections with up to three taxa. Deep 16S rDNA nanopore sequencing yielded 31,706 classifiable reads per sample (median, interquartile range: 18,255–40,901). To control for potential sources of contamination, we additionally sequenced four no-template PCR controls (NTC) and three reactive brain tissue samples (median depth: 27,077 reads). Taxonomic classification of the controls revealed Brachybacterium, Brevundimonas and Bradyrhizobium as the most prevalent genera accounting for >90% of r
{"title":"Rapid bacterial identification from formalin-fixed paraffin-embedded neuropathology specimens using 16S rDNA nanopore sequencing.","authors":"Anne Albers,&nbsp;Dorothee Cäcilia Spille,&nbsp;Eric Suero-Molina,&nbsp;Frieder Schaumburg,&nbsp;Walter Stummer,&nbsp;Werner Paulus,&nbsp;Christian Thomas","doi":"10.1111/nan.12871","DOIUrl":"https://doi.org/10.1111/nan.12871","url":null,"abstract":"Bacterial infections of the central nervous system (CNS) can be severe, life-threatening diseases. Early detection of causative pathogens is crucial for the rapid administration of a tailored antibiotic regime. However, microbiological cultures are negative in one third of bacterial CNS abscesses [1], and routine neuropathology diagnostics are typically limited to histological staining techniques such as Gram or Warthin-Starry. Moreover, tissue might not have been submitted for microbiological culture at the time of surgery in cases without a preoperative suspicion of CNS infection. Molecular diagnostics using pathogen-specific PCR provides an alternative diagnostic approach and has been successfully applied to formalin-fixed paraffinembedded (FFPE) tissue samples [2] but is hypothesis driven and thus requires a priori suspicion of the causative pathogen. Metagenomic sequencing of the bacterial 16S rRNA gene represents an unbiased alternative and has been successfully applied to study the bacterial metagenome of brain abscesses based on DNA extracted from unfixed specimens [3, 4]. Here, we introduce a rapid and scalable approach for bacterial pathogen detection from FFPE specimens using nanopore sequencing of 16S rDNA amplicons. FFPE samples of 32 bacterial CNS infections (31 brain abscesses and 1 subdural empyema) and 3 control samples (reactive brain tissue) were retrieved from our archive. Clinical data and microbiological culture results were compiled by reviewing patient records. After DNA extraction, multiplex PCR with four primer sets covering variable regions 3–7 of the 16S rRNA gene was performed (see the supporting information). PCR products were sequenced on a nanopore Mk1c device. After basecalling, raw fastq files were uploaded on the EPI2ME platform (Metrichor Ltd., Oxford, UK), and results were loaded into the R environment for further analysis (supporting information). Raw sequencing files are available under the BioProject Accession No. PRJNA899355 (ncbi.nlm.nih.gov/bioproject/899355). The median age of the 8 females and 24 males was 57 years (range 13–84 years). Preoperatively, a diagnosis of bacterial CNS infection has been suspected in 24 patients (75%), whereas a malignant tumour was radiologically considered in six cases (19%); in two patients, the aetiology of the lesion had been unclear (Table S1). On Gram staining, bacteria were identified in 23 samples (72%). All cases had positive bacterial cultures, and 10 samples (31%) showed mixed infections with up to three taxa. Deep 16S rDNA nanopore sequencing yielded 31,706 classifiable reads per sample (median, interquartile range: 18,255–40,901). To control for potential sources of contamination, we additionally sequenced four no-template PCR controls (NTC) and three reactive brain tissue samples (median depth: 27,077 reads). Taxonomic classification of the controls revealed Brachybacterium, Brevundimonas and Bradyrhizobium as the most prevalent genera accounting for &gt;90% of r","PeriodicalId":19151,"journal":{"name":"Neuropathology and Applied Neurobiology","volume":"49 1","pages":"e12871"},"PeriodicalIF":5.0,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9361618","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
A non-hemispheric transtentorial ZFTA fusion-positive ependymoma in a 6-month-old boy. 6个月男孩非半球经小叶ZFTA融合阳性室管膜瘤。
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-01 DOI: 10.1111/nan.12886
Antonello Cardoni, Sabina Barresi, Eleonora Piccirilli, Viola Alesi, Evelina Miele, Isabella Giovannoni, Silvia Genovese, Giada Del Baldo, Francesca Diomedi-Camassei, Manila Antonelli, Felice Giangaspero, Chiara Puggioni, Andrea Carai, Giovanna Stefania Colafati, Angela Mastronuzzi, Marco Gessi, Rita Alaggio, Sabrina Rossi
Pathology Unit, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Imaging Department, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Neuroscience, Imaging and Clinical Sciences (DNISC), University “Gabriele D’Annunzio” of Chieti-Pescara, Chieti, Italy Laboratory of Medical Genetics, Translational Cytogenomics Research Unit, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Onco-Hematology, Cell Therapy, Gene Therapies and Hemopoietic Transplant, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Radiology, Oncology and Anatomic Pathology, University La Sapienza, Rome, Italy IRCCS Neuromed, Pozzilli, Italy Neurosurgery Unit, Department of Neuroscience and Neurorehabilitation, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Neuropathology Unit, Pathology Division Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica S. Cuore, Rome, Italy
{"title":"A non-hemispheric transtentorial ZFTA fusion-positive ependymoma in a 6-month-old boy.","authors":"Antonello Cardoni,&nbsp;Sabina Barresi,&nbsp;Eleonora Piccirilli,&nbsp;Viola Alesi,&nbsp;Evelina Miele,&nbsp;Isabella Giovannoni,&nbsp;Silvia Genovese,&nbsp;Giada Del Baldo,&nbsp;Francesca Diomedi-Camassei,&nbsp;Manila Antonelli,&nbsp;Felice Giangaspero,&nbsp;Chiara Puggioni,&nbsp;Andrea Carai,&nbsp;Giovanna Stefania Colafati,&nbsp;Angela Mastronuzzi,&nbsp;Marco Gessi,&nbsp;Rita Alaggio,&nbsp;Sabrina Rossi","doi":"10.1111/nan.12886","DOIUrl":"https://doi.org/10.1111/nan.12886","url":null,"abstract":"Pathology Unit, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Imaging Department, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Neuroscience, Imaging and Clinical Sciences (DNISC), University “Gabriele D’Annunzio” of Chieti-Pescara, Chieti, Italy Laboratory of Medical Genetics, Translational Cytogenomics Research Unit, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Onco-Hematology, Cell Therapy, Gene Therapies and Hemopoietic Transplant, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Department of Radiology, Oncology and Anatomic Pathology, University La Sapienza, Rome, Italy IRCCS Neuromed, Pozzilli, Italy Neurosurgery Unit, Department of Neuroscience and Neurorehabilitation, Bambino Gesù Children’s Hospital, IRCCS, Rome, Italy Neuropathology Unit, Pathology Division Fondazione Policlinico Universitario A. Gemelli IRCCS, Università Cattolica S. Cuore, Rome, Italy","PeriodicalId":19151,"journal":{"name":"Neuropathology and Applied Neurobiology","volume":"49 1","pages":"e12886"},"PeriodicalIF":5.0,"publicationDate":"2023-02-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10855887","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":2,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling the identities of null cell tumours: Epigenomics corroborate subtle histological cues in pituitary neuroendocrine tumour/adenoma classification. 揭示零细胞肿瘤的身份:表观基因组学证实了垂体神经内分泌肿瘤/腺瘤分类的微妙组织学线索。
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-01 DOI: 10.1111/nan.12870
Matthias Dottermusch, Ulrich Schüller, Christian Hagel, Wolfgang Saeger

Aims: Pituitary neuroendocrine tumour (PitNET)/adenoma classification is based on cell lineage and requires immunopositivity for adenohypophysial hormones and/or transcription factors (TFs) steroidogenic factor 1 (SF1), T-box transcription factor TBX19 (TPIT) or pituitary-specific positive transcription factor 1 (PIT1). PitNET/adenomas lacking lineage affiliation are termed 'null cell' tumours (NCTs). NCT diagnosis may be afflicted by methodological limitations and inconsistent diagnostic approaches. Previous studies have questioned the existence of true NCTs. In this study, we explore the epigenomic identities of PitNET/adenomas lacking clear TF immunopositivity.

Methods: Seventy-four hormone-negative PitNET/adenomas were immunostained and scored for SF1, TPIT and PIT1 expression. All tumours were classified as gonadotroph, corticotroph, PIT1-positive or 'null cell'. NCTs were subjected to global DNA methylation analysis. Epigenomic profiles of NCTs were compared to reference tumours using Uniform Manifold Approximation and Projection (UMAP) plotting and methylation-based classification.

Results: TF immunostaining revealed definite lineage identity in 59 of 74 (79.7%) hormone-negative PitNET/adenomas. Of the remaining 15 NCTs, 13 demonstrated minimal and inconclusive nuclear SF1 or TPIT expression (5 and 8, respectively). Two NCTs were entirely immunonegative. UMAP plotting and methylation-based classification demonstrated that the epigenomes of NCTs with minimal SF1 or TPIT expression were adequately affiliated with gonadotroph or corticotroph lineages, respectively. The two immunonegative NCTs were located near the corticotroph PitNET/adenomas via UMAP, whereas the methylation classifier could not match these two cases to predefined tumour classes.

Conclusions: Epigenomic analyses substantiate lineage identification based on minimal TF immunopositivity in PitNET/adenomas. This strategy dramatically decreases the incidence of NCTs and further challenges the legitimacy of NCTs as a distinct PitNET/adenoma subtype. Our study may be useful for guiding diagnostic efforts and future considerations of PitNET/adenoma classification.

目的:垂体神经内分泌肿瘤(PitNET)/腺瘤的分类基于细胞谱系,需要腺垂体激素和/或转录因子(TFs)的免疫阳性,类固醇生成因子1 (SF1), T-box转录因子TBX19 (TPIT)或垂体特异性阳性转录因子1 (PIT1)。缺乏谱系关联的PitNET/腺瘤被称为“零细胞”肿瘤(nct)。NCT诊断可能受到方法学上的限制和不一致的诊断方法的影响。以前的研究质疑真正的nct的存在。在这项研究中,我们探讨了缺乏明确TF免疫阳性的PitNET/腺瘤的表观基因组特征。方法:对74例激素阴性PitNET/腺瘤进行免疫染色,并对SF1、TPIT和PIT1的表达进行评分。所有肿瘤均分为促性腺激素、促皮质激素、pit1阳性或“空细胞”。对nct进行全局DNA甲基化分析。使用统一流形近似和投影(UMAP)绘图和基于甲基化的分类将nct的表观基因组谱与参考肿瘤进行比较。结果:TF免疫染色显示74例激素阴性PitNET/腺瘤中有59例(79.7%)具有明确的谱系特征。在剩下的15个nct中,13个表现出少量和不确定的核SF1或TPIT表达(分别为5和8)。2例nct完全免疫阴性。UMAP绘图和基于甲基化的分类表明,SF1或TPIT表达最少的nct的表观基因组分别与促性腺功能或促皮质功能谱系充分相关。这两个免疫阴性的nct通过UMAP定位在促皮质性PitNET/腺瘤附近,而甲基化分类器无法将这两个病例与预定义的肿瘤分类相匹配。结论:表观基因组分析证实了PitNET/腺瘤中基于最小TF免疫阳性的谱系鉴定。这一策略显著降低了nct的发病率,并进一步挑战了nct作为独特的PitNET/腺瘤亚型的合法性。我们的研究可能有助于指导PitNET/腺瘤分类的诊断工作和未来的考虑。
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引用次数: 1
Robust methylation-based classification of brain tumours using nanopore sequencing. 利用纳米孔测序进行基于甲基化的脑肿瘤分类。
IF 5 2区 医学 Q1 CLINICAL NEUROLOGY Pub Date : 2023-02-01 DOI: 10.1111/nan.12856
Luis P Kuschel, Jürgen Hench, Stephan Frank, Ivana Bratic Hench, Elodie Girard, Maud Blanluet, Julien Masliah-Planchon, Martin Misch, Julia Onken, Marcus Czabanka, Dongsheng Yuan, Sören Lukassen, Philipp Karau, Naveed Ishaque, Elisabeth G Hain, Frank Heppner, Ahmed Idbaih, Nikolaus Behr, Christoph Harms, David Capper, Philipp Euskirchen

Background: DNA methylation-based classification of cancer provides a comprehensive molecular approach to diagnose tumours. In fact, DNA methylation profiling of human brain tumours already profoundly impacts clinical neuro-oncology. However, current implementation using hybridisation microarrays is time consuming and costly. We recently reported on shallow nanopore whole-genome sequencing for rapid and cost-effective generation of genome-wide 5-methylcytosine profiles as input to supervised classification. Here, we demonstrate that this approach allows us to discriminate a wide spectrum of primary brain tumours.

Results: Using public reference data of 82 distinct tumour entities, we performed nanopore genome sequencing on 382 tissue samples covering 46 brain tumour (sub)types. Using bootstrap sampling in a cohort of 55 cases, we found that a minimum set of 1000 random CpG features is sufficient for high-confidence classification by ad hoc random forests. We implemented score recalibration as a confidence measure for interpretation in a clinical context and empirically determined a platform-specific threshold in a randomly sampled discovery cohort (N = 185). Applying this cut-off to an independent validation series (n = 184) yielded 148 classifiable cases (sensitivity 80.4%) and demonstrated 100% specificity. Cross-lab validation demonstrated robustness with concordant results across four laboratories in 10/11 (90.9%) cases. In a prospective benchmarking (N = 15), the median time to results was 21.1 h.

Conclusions: In conclusion, nanopore sequencing allows robust and rapid methylation-based classification across the full spectrum of brain tumours. Platform-specific confidence scores facilitate clinical implementation for which prospective evaluation is warranted and ongoing.

背景:基于DNA甲基化的癌症分类为肿瘤诊断提供了一种全面的分子方法。事实上,人类脑肿瘤的DNA甲基化谱已经深刻地影响了临床神经肿瘤学。然而,目前使用杂交微阵列的实现既耗时又昂贵。我们最近报道了浅纳米孔全基因组测序,用于快速和经济高效地生成全基因组5-甲基胞嘧啶谱,作为监督分类的输入。在这里,我们证明了这种方法使我们能够区分广泛的原发性脑肿瘤。结果:利用82种不同肿瘤实体的公共参考数据,我们对46种脑肿瘤(亚)类型的382个组织样本进行了纳米孔基因组测序。在55个案例的队列中使用自举抽样,我们发现1000个随机CpG特征的最小集足以通过特设随机森林进行高置信度分类。我们实施了分数重新校准,作为临床背景下解释的置信度措施,并在随机抽样的发现队列(N = 185)中经验地确定了平台特定阈值。将该截止值应用于独立验证系列(n = 184),得到148例可分类病例(敏感性80.4%),并显示100%的特异性。跨实验室验证显示稳健性,10/11(90.9%)病例中四个实验室的结果一致。在前瞻性基准测试(N = 15)中,获得结果的中位时间为21.1小时。结论:总之,纳米孔测序可以在全谱脑肿瘤中实现稳健和快速的基于甲基化的分类。平台特异性置信度评分促进临床实施,前瞻性评估是有保证的和正在进行的。
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引用次数: 2
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Neuropathology and Applied Neurobiology
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