首页 > 最新文献

Nucleosides, Nucleotides & Nucleic Acids最新文献

英文 中文
Current updates on genetic spectrum of usher syndrome. 目前有关 usher 综合征遗传谱的最新进展。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-08 DOI: 10.1080/15257770.2024.2344194
Farman Ullah, Muhammad Zeeshan Ali, Safeer Ahmad, Muhammad Muzammal, Saadullah Khan, Jabbar Khan, Muzammil Ahmad Khan

Usher syndrome (USH) is a genetic disorder that is characterized by sensorineural hearing loss (HL) and visual abnormality, i.e., loss of night vision and side (peripheral) vision. Usher syndrome is categorized into four subtypes (USH1, USH2, USH3, USH4) on the basis of phenotypic spectrum. Profound hearing loss (HL), vestibular are flexia and language disturbance are typically associated with Usher type 1, while USH2 is linked with moderate to severe level of congenital HL. USH3 has late onset of deafness in life (referred to as "postlingual"), inconstant vestibular abnormality and onset of retinitis pigmentosa (RP) typically in 2nd decade of life. Patients with USH4 have no vestibular impairment and have late onset of retinitis pigmentosa (RP) and sensorineural hearing loss. Until now, 15 genetic loci have been reported to be linked with all types of USH. Among reported USH loci, nine are related to be involved in USH1, three in USH2, two in USH3 and one locus in USH4, respectively. Current review has described different types of Usher syndrome and their molecular genetics, and role of usher proteins in sensory organs. Moreover, we also suggested certain candidate genes for uncharacterized loci that may help the molecular geneticist to reach their target easily. Conclusion: The current catalogue of USH genetic data may assist in genetic counseling, genetic diagnosis, and genotype-phenotype correlation.

乌谢尔综合征(USH)是一种遗传性疾病,其特征是感音神经性听力损失(HL)和视觉异常,即夜视和侧(周边)视力丧失。根据表型谱,乌谢尔综合征可分为四个亚型(USH1、USH2、USH3 和 USH4)。乌谢尔 1 型通常伴有严重的听力损失(HL)、前庭功能障碍和语言障碍,而乌谢尔 2 型则伴有中度到重度的先天性听力损失。USH3 晚期才出现耳聋(称为 "舌后"),前庭异常不稳定,视网膜色素变性(RP)通常在出生后的第二个十年发病。USH4 患者没有前庭功能障碍,但色素性视网膜炎(RP)和感音神经性听力损失发病较晚。迄今为止,已有 15 个基因位点与所有类型的 USH 相关。在已报道的 USH 基因位点中,9 个与 USH1 有关,3 个与 USH2 有关,2 个与 USH3 有关,1 个与 USH4 有关。本综述描述了不同类型的乌谢尔综合征及其分子遗传学,以及乌谢尔蛋白在感觉器官中的作用。此外,我们还提出了一些未表征基因座的候选基因,这些候选基因可能有助于分子遗传学家轻松找到目标基因。结论目前的乌舍氏症遗传学数据目录可能有助于遗传咨询、遗传诊断以及基因型与表型的相关性。
{"title":"Current updates on genetic spectrum of usher syndrome.","authors":"Farman Ullah, Muhammad Zeeshan Ali, Safeer Ahmad, Muhammad Muzammal, Saadullah Khan, Jabbar Khan, Muzammil Ahmad Khan","doi":"10.1080/15257770.2024.2344194","DOIUrl":"https://doi.org/10.1080/15257770.2024.2344194","url":null,"abstract":"<p><p>Usher syndrome (USH) is a genetic disorder that is characterized by sensorineural hearing loss (HL) and visual abnormality, i.e., loss of night vision and side (peripheral) vision. Usher syndrome is categorized into four subtypes (USH1, USH2, USH3, USH4) on the basis of phenotypic spectrum. Profound hearing loss (HL), vestibular are flexia and language disturbance are typically associated with Usher type 1, while USH2 is linked with moderate to severe level of congenital HL. USH3 has late onset of deafness in life (referred to as \"postlingual\"), inconstant vestibular abnormality and onset of retinitis pigmentosa (RP) typically in 2nd decade of life. Patients with USH4 have no vestibular impairment and have late onset of retinitis pigmentosa (RP) and sensorineural hearing loss. Until now, 15 genetic loci have been reported to be linked with all types of USH. Among reported USH loci, nine are related to be involved in USH1, three in USH2, two in USH3 and one locus in USH4, respectively. Current review has described different types of Usher syndrome and their molecular genetics, and role of usher proteins in sensory organs. Moreover, we also suggested certain candidate genes for uncharacterized loci that may help the molecular geneticist to reach their target easily. Conclusion: The current catalogue of USH genetic data may assist in genetic counseling, genetic diagnosis, and genotype-phenotype correlation.</p>","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":" ","pages":"1-24"},"PeriodicalIF":1.3,"publicationDate":"2024-05-08","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140892357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synthesis, conformational analysis and antimicrobial activity of 10-benzyl-1,2,4-triazolo[4,3-b]1,2,4-triazino[5,6-b]indole acyclo C-nucleoside analogs. 10-苄基-1,2,4-三唑并[4,3-b]1,2,4-三嗪并[5,6-b]吲哚酰环 C 核苷类似物的合成、构象分析和抗菌活性。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-02 DOI: 10.1080/15257770.2024.2348741
Adel Z Nasr, Reda M Keshk, El-Sayed M Abdelrehim, Asmaa S Sallam

Condensation of 5-benzyl-3-hydrazino-1,2,4-triazino[5,6-b]indole with various sugar aldoses or ketoses gave the corresponding sugar hydrazones as single geometrical isomer or exist in E/Z tautomeric isomers. The hydrazones underwent heterocyclization with Fe(Ш)Cl3 to give the N2-adduct acyclo C-nucleosides: 3-(alditol-1yl)-10-benzyl-1,2,4-triazolo[4,3-b]1,2,4-triazino[5,6-b]indoles rather than the N4-adduct: 10-(alditol-1-yl)-3-benzyl-1,2,4-triazolo[3,4-c]1,2,4-triazino[5,6-b] indoles on the basis of chemical and UV spectral proofs. Conformational analysis of their polyacetates were studied. The new acyclo C-nucleosides were evaluated for antimicrobial activity.

将 5-苄基-3-肼基-1,2,4-三嗪并[5,6-b]吲哚与各种糖醛或糖酮缩合,可得到相应的糖肼,它们是单一的几何异构体,或存在 E/Z 同分异构体。这些酰肼与 Fe(Ш)Cl3 发生杂环化反应,得到 N2-加成酰环 C 核苷:3-(醛糖醇-1-基)-10-苄基-1,2,4-三唑并[4,3-b]1,2,4-三嗪并[5,6-b]吲哚,而不是 N4-加合物:在化学和紫外光谱证明的基础上,我们发现了 10-(醛糖醇-1-基)-3-苄基-1,2,4-三唑并[3,4-c]1,2,4-三嗪并[5,6-b]吲哚。对其聚乙酸酯的构象分析进行了研究。对新的酰环 C 核苷进行了抗菌活性评估。
{"title":"Synthesis, conformational analysis and antimicrobial activity of 10-benzyl-1,2,4-triazolo[4,3-<i>b</i>]1,2,4-triazino[5,6-<i>b</i>]indole acyclo <i>C</i>-nucleoside analogs.","authors":"Adel Z Nasr, Reda M Keshk, El-Sayed M Abdelrehim, Asmaa S Sallam","doi":"10.1080/15257770.2024.2348741","DOIUrl":"https://doi.org/10.1080/15257770.2024.2348741","url":null,"abstract":"<p><p>Condensation of 5-benzyl-3-hydrazino-1,2,4-triazino[5,6-<i>b</i>]indole with various sugar aldoses or ketoses gave the corresponding sugar hydrazones as single geometrical isomer or exist in <i>E/Z</i> tautomeric isomers. The hydrazones underwent heterocyclization with Fe(Ш)Cl<sub>3</sub> to give the <i>N2</i>-adduct acyclo <i>C</i>-nucleosides: 3-(alditol-1yl)-10-benzyl-1,2,4-triazolo[4,3-<i>b</i>]1,2,4-triazino[5,6-<i>b</i>]indoles rather than the <i>N4</i>-adduct: 10-(alditol-1-yl)-3-benzyl-1,2,4-triazolo[3,4-<i>c</i>]1,2,4-triazino[5,6-<i>b</i>] indoles on the basis of chemical and UV spectral proofs. Conformational analysis of their polyacetates were studied. The new acyclo <i>C</i>-nucleosides were evaluated for antimicrobial activity.</p>","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":" ","pages":"1-23"},"PeriodicalIF":1.3,"publicationDate":"2024-05-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140859957","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Nucleic acids based integrated macromolecular complexes for SiRNA delivery: Recent advancements. 用于 SiRNA 递送的基于核酸的集成大分子复合物:最新进展。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-05-01 DOI: 10.1080/15257770.2024.2347499
Dilpreet Singh, Lovedeep Singh, Simranjeet Kaur, Akshita Arora

The therapeutic potential of small interfering RNA (siRNA) is monumental, offering a pathway to silence disease-causing genes with precision. However, the delivery of siRNA to target cells in-vivo remains a formidable challenge, owing to degradation by nucleases, poor cellular uptake and immunogenicity. This overview examines recent advancements in the design and application of nucleic acid-based integrated macromolecular complexes for the efficient delivery of siRNA. We dissect the innovative delivery vectors developed in recent years, including lipid-based nanoparticles, polymeric carriers, dendrimer complexes and hybrid systems that incorporate stimuli-responsive elements for targeted and controlled release. Advancements in bioconjugation techniques, active targeting strategies and nanotechnology-enabled delivery platforms are evaluated for their contribution to enhancing siRNA delivery. It also addresses the complex interplay between delivery system design and biological barriers, highlighting the dynamic progress and remaining hurdles in translating siRNA therapies from bench to bedside. By offering a comprehensive overview of current strategies and emerging technologies, we underscore the future directions and potential impact of siRNA delivery systems in personalized medicine.

小干扰 RNA(siRNA)具有巨大的治疗潜力,它提供了一种精确抑制致病基因的途径。然而,由于核酸酶降解、细胞吸收率低和免疫原性等原因,如何在体内将 siRNA 运送到靶细胞仍是一项艰巨的挑战。本综述探讨了高效递送 siRNA 的核酸基整合大分子复合物的设计和应用方面的最新进展。我们剖析了近年来开发的创新型递送载体,包括基于脂质的纳米颗粒、聚合物载体、树枝状聚合物复合物以及包含刺激响应元件的混合系统,以实现定向和可控释放。本研究评估了生物共轭技术、主动靶向策略和纳米技术驱动的递送平台等方面的进展,以了解它们对增强 siRNA 递送的贡献。报告还探讨了递送系统设计与生物障碍之间复杂的相互作用,强调了 siRNA 疗法从实验室到临床转化过程中的动态进展和仍然存在的障碍。通过对当前策略和新兴技术的全面概述,我们强调了 siRNA 递送系统在个性化医疗中的未来方向和潜在影响。
{"title":"Nucleic acids based integrated macromolecular complexes for SiRNA delivery: Recent advancements.","authors":"Dilpreet Singh, Lovedeep Singh, Simranjeet Kaur, Akshita Arora","doi":"10.1080/15257770.2024.2347499","DOIUrl":"https://doi.org/10.1080/15257770.2024.2347499","url":null,"abstract":"<p><p>The therapeutic potential of small interfering RNA (siRNA) is monumental, offering a pathway to silence disease-causing genes with precision. However, the delivery of siRNA to target cells <i>in-vivo</i> remains a formidable challenge, owing to degradation by nucleases, poor cellular uptake and immunogenicity. This overview examines recent advancements in the design and application of nucleic acid-based integrated macromolecular complexes for the efficient delivery of siRNA. We dissect the innovative delivery vectors developed in recent years, including lipid-based nanoparticles, polymeric carriers, dendrimer complexes and hybrid systems that incorporate stimuli-responsive elements for targeted and controlled release. Advancements in bioconjugation techniques, active targeting strategies and nanotechnology-enabled delivery platforms are evaluated for their contribution to enhancing siRNA delivery. It also addresses the complex interplay between delivery system design and biological barriers, highlighting the dynamic progress and remaining hurdles in translating siRNA therapies from bench to bedside. By offering a comprehensive overview of current strategies and emerging technologies, we underscore the future directions and potential impact of siRNA delivery systems in personalized medicine.</p>","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":" ","pages":"1-24"},"PeriodicalIF":1.3,"publicationDate":"2024-05-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140864644","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of nucleoside analogues, lipophilic prodrugs and elaidic acids on core signaling pathways in cancer cells 核苷类似物、亲脂原药和鞣酸对癌细胞核心信号通路的影响
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-15 DOI: 10.1080/15257770.2024.2339952
Marika A. Frańczak, Claudine van der Sande, Elisa Giovannetti, Godefridus J. Peters
Nucleoside analogs such as gemcitabine (GEM; dFdC) and cytarabine (Ara-C) require nucleoside transporters to enter cells, and deficiency in equilibrative nucleoside transporter 1 (ENT1) can lead to...
核苷类似物(如吉西他滨(GEM;dFdC)和阿糖胞苷(Ara-C))需要核苷转运体才能进入细胞,而平衡核苷转运体1(ENT1)的缺乏可导致核苷代谢紊乱。
{"title":"Effects of nucleoside analogues, lipophilic prodrugs and elaidic acids on core signaling pathways in cancer cells","authors":"Marika A. Frańczak, Claudine van der Sande, Elisa Giovannetti, Godefridus J. Peters","doi":"10.1080/15257770.2024.2339952","DOIUrl":"https://doi.org/10.1080/15257770.2024.2339952","url":null,"abstract":"Nucleoside analogs such as gemcitabine (GEM; dFdC) and cytarabine (Ara-C) require nucleoside transporters to enter cells, and deficiency in equilibrative nucleoside transporter 1 (ENT1) can lead to...","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":"50 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140592357","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Promoter of lncRNA MORT is aberrantly methylated in colorectal cancer lncRNA MORT 的启动子在结直肠癌中异常甲基化
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-15 DOI: 10.1080/15257770.2024.2328732
Aylar Nazari, Tayyebeh Ghasemi, Mohammad Khalaj-Kondori, Ramin Fathi
Aberrant DNA methylation plays essential roles in the colorectal cancer (CRC) carcinogenesis and has been demonstrated as a promising marker for cancer early detection. In this project, methylation...
畸变的DNA甲基化在结直肠癌(CRC)癌变过程中起着至关重要的作用,并已被证明是一种很有希望的癌症早期检测标志物。在该项目中,甲基化...
{"title":"Promoter of lncRNA MORT is aberrantly methylated in colorectal cancer","authors":"Aylar Nazari, Tayyebeh Ghasemi, Mohammad Khalaj-Kondori, Ramin Fathi","doi":"10.1080/15257770.2024.2328732","DOIUrl":"https://doi.org/10.1080/15257770.2024.2328732","url":null,"abstract":"Aberrant DNA methylation plays essential roles in the colorectal cancer (CRC) carcinogenesis and has been demonstrated as a promising marker for cancer early detection. In this project, methylation...","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":"41 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140592565","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Correlation of BARD1 gene polymorphisms with risk of neuroblastoma: a meta-analysis BARD1 基因多态性与神经母细胞瘤风险的相关性:一项荟萃分析
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-15 DOI: 10.1080/15257770.2024.2336215
Shan Chen, Di Xu, Rongdong Huang, Yang Lin, Lizhi Li
BRCA1-associated RING domain protein 1 (BARD1) gene polymorphisms may be associated with neuroblastoma (NB) susceptibility. However, the results remain controversial. Relevant studies were identifi...
BRCA1相关RING结构域蛋白1(BARD1)基因的多态性可能与神经母细胞瘤(NB)的易感性有关。然而,研究结果仍存在争议。相关研究发现...
{"title":"Correlation of BARD1 gene polymorphisms with risk of neuroblastoma: a meta-analysis","authors":"Shan Chen, Di Xu, Rongdong Huang, Yang Lin, Lizhi Li","doi":"10.1080/15257770.2024.2336215","DOIUrl":"https://doi.org/10.1080/15257770.2024.2336215","url":null,"abstract":"BRCA1-associated RING domain protein 1 (BARD1) gene polymorphisms may be associated with neuroblastoma (NB) susceptibility. However, the results remain controversial. Relevant studies were identifi...","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":"54 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-04-15","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140592239","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Association of rs11081062 polymorphism of DLGAP1 gene and levels of SLC1A1 protein with obsessive-compulsive disorder DLGAP1 基因 rs11081062 多态性和 SLC1A1 蛋白水平与强迫症的关系
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-09 DOI: 10.1080/15257770.2024.2336213
Efruz İrem Akkuş, Burcu Bayoğlu, Neşe Kocabaşoğlu, Jansed Berfin Yıldız, Müjgan Cengiz
Glutamate is an important neurotransmitter known to be effective in obsessive-compulsive disorder (OCD). The aim of this study is to investigate the relationship between the DLGAP1 gene encoding th...
谷氨酸是一种重要的神经递质,已知对强迫症(OCD)有效。本研究旨在探讨编码谷氨酸的DLGAP1基因与强迫症之间的关系。
{"title":"Association of rs11081062 polymorphism of DLGAP1 gene and levels of SLC1A1 protein with obsessive-compulsive disorder","authors":"Efruz İrem Akkuş, Burcu Bayoğlu, Neşe Kocabaşoğlu, Jansed Berfin Yıldız, Müjgan Cengiz","doi":"10.1080/15257770.2024.2336213","DOIUrl":"https://doi.org/10.1080/15257770.2024.2336213","url":null,"abstract":"Glutamate is an important neurotransmitter known to be effective in obsessive-compulsive disorder (OCD). The aim of this study is to investigate the relationship between the DLGAP1 gene encoding th...","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":"41 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140592238","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Evaluation of miR-130b-3p and miR-375 levels and telomere length with telomerase activity in prostate cancer 评估前列腺癌中 miR-130b-3p 和 miR-375 的水平以及端粒长度与端粒酶活性的关系
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-04-09 DOI: 10.1080/15257770.2024.2334896
Abdullah Karadağ, Ebubekir Dirican, Çağdaş Gökhun Özmerdiven, Ata Özen, Semih Ayan, Selda Kabadere
Prostate cancer (PC) is the most frequent cancer in males, as well as the second highest cause of cancer-related deaths in men. Differences in expression levels of miRNAs were linked with prostat c...
前列腺癌(PC)是男性最常见的癌症,也是导致男性癌症相关死亡的第二大原因。miRNA表达水平的差异与前列腺癌的发病率有关。
{"title":"Evaluation of miR-130b-3p and miR-375 levels and telomere length with telomerase activity in prostate cancer","authors":"Abdullah Karadağ, Ebubekir Dirican, Çağdaş Gökhun Özmerdiven, Ata Özen, Semih Ayan, Selda Kabadere","doi":"10.1080/15257770.2024.2334896","DOIUrl":"https://doi.org/10.1080/15257770.2024.2334896","url":null,"abstract":"Prostate cancer (PC) is the most frequent cancer in males, as well as the second highest cause of cancer-related deaths in men. Differences in expression levels of miRNAs were linked with prostat c...","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":"9 1","pages":""},"PeriodicalIF":1.3,"publicationDate":"2024-04-09","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140592539","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
An update of the variant spectrum of the APC gene in Iranian familial adenomatous polyposis patients. 伊朗家族性腺瘤性息肉病患者APC基因变异谱的更新。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2023-07-05 DOI: 10.1080/15257770.2023.2229878
Seyed Mohsen Mirabdolhosseini, Leili Rejali, Mohammad Yaghoob Taleghani, Hossein Sadeghi, Seyed Mohammad Hossein Kashfi, Faeghe Behboudi Farahbakhsh, Mina Golmohammadi, Pegah Larki, Nayeralsadat Fatemi, Pardis Ketabi Moghadam, Ehsan Nazemalhosseini Mojarad, Amir Sadeghi, Hamid Asadzadeh Aghdaie, Mohammad Reza Zali

Familial adenomatous polyposis (FAP) is an autosomal dominant colorectal cancer syndrome that is characterized by the development of multiple adenomas in the colon and rectum with high penetrance rates. This disease has specific features like the occurrence of pathogenic variations in the APC gene and diverse FAP phenotypes due to the occurrence region. In this study we aimed to evaluate pathogenic variants in exons of the APC gene in Iranian patients with FAP. A total of 35 FAP individuals were referred to the gastroenterology ward of Taleghani Hospital. As the aim of the study was to study the germline variations in the participants, the peripheral blood was collected and after the DNA extraction, PCR, and Sanger sequencing processes for the APC gene, the results were evaluated by the ACMG classification guidelines to report their pathogenicity. Accordingly, out of eight specific detected variants, three of them were novel, and the rest were reported previously. These eight variants were all truncating protein and pathogenic, and they were limited to 849-1378 codons. Overall, detected variants revealed discrepancies and parallels with previous reported cases in terms of quantity, occurrence region, and association with demographic and clinicopathological characteristics of patients. The spectrum of detected variants and the patient's phenotype showed distinct characteristics, such as occurrence in specific regions and the absence of extracolonic symptoms like Congenital hypertrophy of the retinal pigment epithelium (CHRPE). These findings open the path to comprehending the typical symptoms, their rarity, and their occurrence in the Iranian population and also due to the facts, we found that the studying of the APC gene alone for diagnosing FAP disease is not sufficient, and considering other genes are completely rational in the case of sequencing and studying the variants.

家族性腺瘤性息肉病(FAP)是一种常染色体显性的结直肠癌综合征,其特征是在结肠和直肠发生多发性腺瘤,具有高外显率。本病具有APC基因致病性变异的发生、FAP表型因发病区域的不同等特异性特征。在这项研究中,我们旨在评估伊朗FAP患者APC基因外显子的致病变异。共有35名FAP患者被转介到Taleghani医院的胃肠病学病房。由于本研究的目的是研究参与者的种系变异,因此采集外周血,经过APC基因的DNA提取、PCR和Sanger测序过程,根据ACMG分类指南对结果进行评估,报告其致病性。因此,在检测到的8个特定变异中,有3个是新的,其余的是以前报道过的。这8个变异均为截断蛋白,具有致病性,且被限制在849 ~ 1378个密码子范围内。总的来说,检测到的变异在数量、发生区域以及与患者人口统计学和临床病理特征的关联方面显示了与先前报告病例的差异和相似之处。检测到的变异谱和患者的表型表现出明显的特征,如发生在特定区域,没有结肠外症状,如先天性视网膜色素上皮肥大(CHRPE)。这些发现为理解FAP在伊朗人群中的典型症状、罕见性和发生率开辟了道路,也由于事实,我们发现仅研究APC基因诊断FAP疾病是不够的,考虑到其他基因在测序和研究变异时是完全合理的。
{"title":"An update of the variant spectrum of the <i>APC</i> gene in Iranian familial adenomatous polyposis patients.","authors":"Seyed Mohsen Mirabdolhosseini, Leili Rejali, Mohammad Yaghoob Taleghani, Hossein Sadeghi, Seyed Mohammad Hossein Kashfi, Faeghe Behboudi Farahbakhsh, Mina Golmohammadi, Pegah Larki, Nayeralsadat Fatemi, Pardis Ketabi Moghadam, Ehsan Nazemalhosseini Mojarad, Amir Sadeghi, Hamid Asadzadeh Aghdaie, Mohammad Reza Zali","doi":"10.1080/15257770.2023.2229878","DOIUrl":"10.1080/15257770.2023.2229878","url":null,"abstract":"<p><p>Familial adenomatous polyposis (FAP) is an autosomal dominant colorectal cancer syndrome that is characterized by the development of multiple adenomas in the colon and rectum with high penetrance rates. This disease has specific features like the occurrence of pathogenic variations in the APC gene and diverse FAP phenotypes due to the occurrence region. In this study we aimed to evaluate pathogenic variants in exons of the APC gene in Iranian patients with FAP. A total of 35 FAP individuals were referred to the gastroenterology ward of Taleghani Hospital. As the aim of the study was to study the germline variations in the participants, the peripheral blood was collected and after the DNA extraction, PCR, and Sanger sequencing processes for the APC gene, the results were evaluated by the ACMG classification guidelines to report their pathogenicity. Accordingly, out of eight specific detected variants, three of them were novel, and the rest were reported previously. These eight variants were all truncating protein and pathogenic, and they were limited to 849-1378 codons. Overall, detected variants revealed discrepancies and parallels with previous reported cases in terms of quantity, occurrence region, and association with demographic and clinicopathological characteristics of patients. The spectrum of detected variants and the patient's phenotype showed distinct characteristics, such as occurrence in specific regions and the absence of extracolonic symptoms like Congenital hypertrophy of the retinal pigment epithelium (CHRPE). These findings open the path to comprehending the typical symptoms, their rarity, and their occurrence in the Iranian population and also due to the facts, we found that the studying of the APC gene alone for diagnosing FAP disease is not sufficient, and considering other genes are completely rational in the case of sequencing and studying the variants.</p>","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":" ","pages":"40-56"},"PeriodicalIF":1.3,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10132332","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Identification of the effects of pathogenic genetic variations of human CYP2C9 and CYP2D6: an in silico approach. 人类CYP2C9和CYP2D6致病基因变异影响的鉴定:一种计算机方法。
IF 1.3 4区 生物学 Q4 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-01-01 Epub Date: 2023-09-25 DOI: 10.1080/15257770.2023.2262519
Orcun Avsar

Genetic variations in the human cytochrome P450 family 2 subfamily C member 9 (CYP2C9) and cytochrome P450 family 2 subfamily D member 6 (CYP2D6) genes may affect drug metabolism and lead to alterations in phenotypes. Genetic variations are associated with toxicity, adverse drug reactions, inefficient treatment. Various in silico tools were combined to investigate the deleterious effects of missense non-synonymous single nucleotide polymorphisms (nsSNPs) of the human CYP2C9 and CYP2D6. The structural and functional effects of the high-risk non-synonymous SNPs in the human CYP2C9 and CYP2D6 were predicted by numerous computational mutation analysis methods. Out of 24 pathogenic missense SNPs in the CYP2C9, 22 nsSNPs had a decreasing effect on protein stability and 13 SNPs were showed to be located at conserved positions. Out of 27 high-risk deleterious non-synonymous SNPs in the human CYP2D6, 21 SNPs decreased protein stability and 16 nsSNPs were predicted to be positioned at conserved regions. Our present study suggests that the identified functional SNPs may affect drug metabolism associated with CYP2C9 and CYP2D6 enzymes.

人类细胞色素P450家族2亚家族C成员9(CYP2C9)和细胞色素P4502亚家族D成员6(CYP2D6)基因的遗传变异可能影响药物代谢并导致表型改变。遗传变异与毒性、药物不良反应、低效治疗有关。将各种计算机工具结合起来研究人类CYP2C9和CYP2D6的错义非同义单核苷酸多态性(nsSNPs)的有害影响。通过多种计算突变分析方法预测了人类CYP2C9和CYP2D6中高危非同义SNPs的结构和功能影响。在CYP2C9中的24个致病性错义SNPs中,22个nsSNPs对蛋白质稳定性有降低作用,13个SNPs位于保守位置。在人类CYP2D6中的27个高危有害非同义SNPs中,21个SNPs降低了蛋白质稳定性,16个nsSNPs被预测位于保守区。我们目前的研究表明,已鉴定的功能性SNPs可能影响与CYP2C9和CYP2D6酶相关的药物代谢。
{"title":"Identification of the effects of pathogenic genetic variations of human <i>CYP2C9</i> and <i>CYP2D6</i>: an <i>in silico</i> approach.","authors":"Orcun Avsar","doi":"10.1080/15257770.2023.2262519","DOIUrl":"10.1080/15257770.2023.2262519","url":null,"abstract":"<p><p>Genetic variations in the human cytochrome P450 family 2 subfamily C member 9 (<i>CYP2C9)</i> and cytochrome P450 family 2 subfamily D member 6 (<i>CYP2D6)</i> genes may affect drug metabolism and lead to alterations in phenotypes. Genetic variations are associated with toxicity, adverse drug reactions, inefficient treatment. Various <i>in silico</i> tools were combined to investigate the deleterious effects of missense non-synonymous single nucleotide polymorphisms (nsSNPs) of the human <i>CYP2C9</i> and <i>CYP2D6</i>. The structural and functional effects of the high-risk non-synonymous SNPs in the human <i>CYP2C9</i> and <i>CYP2D6</i> were predicted by numerous computational mutation analysis methods. Out of 24 pathogenic missense SNPs in the <i>CYP2C9</i>, 22 nsSNPs had a decreasing effect on protein stability and 13 SNPs were showed to be located at conserved positions. Out of 27 high-risk deleterious non-synonymous SNPs in the human <i>CYP2D6</i>, 21 SNPs decreased protein stability and 16 nsSNPs were predicted to be positioned at conserved regions. Our present study suggests that the identified functional SNPs may affect drug metabolism associated with CYP2C9 and CYP2D6 enzymes.</p>","PeriodicalId":19343,"journal":{"name":"Nucleosides, Nucleotides & Nucleic Acids","volume":" ","pages":"356-376"},"PeriodicalIF":1.3,"publicationDate":"2024-01-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"41134724","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Nucleosides, Nucleotides & Nucleic Acids
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1