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Knowledge-graph embeddings for osteoarthritis candidate prediction. 知识图谱嵌入用于骨关节炎候选者预测。
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02290-x
Zhenggang Wang,Zhengyu Lu,Meng Li,Peiqing Zhao,Chengliang Zhang
Osteoarthritis (OA) is a prevalent, disabling joint disease with no approved disease modifying treatments. We present a knowledge-graph based approach to discover candidate treatments for OA by integrating large-scale biomedical data. We introduce the Osteoarthritis Knowledge-graph (OKG), a comprehensive network derived from the Drug Repurposing Knowledge-graph (DRKG) and enriched with causal genetic associations from OA genome-wide association study (GWAS) involving nearly 2 million individuals. We propose CausalPathKG, a knowledge-graph embedding model built upon RotatE that integrates domain specific innovations: (i) weighted gene OA edges reflecting GWAS significance, (ii) a path based regularization term to encourage drug gene OA causal connectivity, (iii) multi hop graph attention to prioritize informative paths, and (iv) self adversarial negative sampling with type consistent corruptions for robust training. CausalPathKG was trained to predict missing links, while withholding known OA-related edges for testing. In experiments, CausalPathKG outperformed TransE and RotatE baselines in predicting held out OA treatments, achieving higher link prediction accuracy and classification performance. Case studies highlight that top ranked repurposed drugs engage key OA-associated genes and pathways identified in human genetics. These results demonstrate that incorporating genetic evidence into knowledge-graph models can improve the discovery of therapeutics, offering a computational strategy to bridge human genomic data with drug repurposing.
骨关节炎(OA)是一种普遍的致残关节疾病,没有批准的疾病修饰治疗。我们提出了一种基于知识图谱的方法,通过整合大规模生物医学数据来发现OA的候选治疗方法。我们介绍了骨关节炎知识图谱(OKG),这是一个源自药物重新利用知识图谱(DRKG)的综合网络,并丰富了OA全基因组关联研究(GWAS)中涉及近200万个体的因果遗传关联。我们提出了CausalPathKG,这是一个建立在RotatE基础上的知识图嵌入模型,它集成了特定领域的创新:(i)反映GWAS重要性的加权基因OA边缘,(ii)基于路径的正则化项,以鼓励药物基因OA因果连接,(iii)多跳图关注,优先考虑信息路径,以及(iv)具有类型一致腐败的自对抗负采样,用于鲁棒性训练。CausalPathKG被训练来预测缺失的链接,同时保留已知的oa相关边进行测试。在实验中,CausalPathKG在预测OA治疗方面优于TransE和RotatE基线,实现了更高的链路预测精度和分类性能。案例研究强调,排名靠前的再用途药物涉及人类遗传学中确定的关键oa相关基因和途径。这些结果表明,将遗传证据纳入知识图谱模型可以改善治疗方法的发现,提供一种计算策略,将人类基因组数据与药物再利用联系起来。
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引用次数: 0
Foundation model embeddings for multimodal oncology data integration. 多模式肿瘤学数据集成的基础模型嵌入。
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02312-8
Tara P Menon,Arjun Mahajan,Dylan Powell
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引用次数: 0
Evaluation of two easy-to-implement digital breathing interventions in the context of daily stress levels in a series of N-of-1 trials: results from the Anti-Stress Intervention Among Physicians (ASIP) study 在一系列N-of-1试验中,在日常压力水平的背景下评估两种易于实施的数字呼吸干预措施:来自医生抗压力干预(ASIP)研究的结果
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02317-3
Valentin Max Vetter, Tobias Kurth, Stefan Konigorski
Physicians face intense work-related stress, which can harm their health, increase the risk of medical errors, lower healthcare quality, and increase costs within the healthcare system. In this 4-week intervention study, individual-level and population-level effects of two short and easy-to-perform breathing exercises designed to reduce stress are evaluated among 76 physicians in residency in Germany in a series of N-of-1 trials. Levels of stress and levels of stress expected for the following day were assessed electronically every day via the StudyU App (protocol adherence: 91.9%). Average intervention effects were estimated using Bayesian linear regression models. They were overall small on the population level, but they showed large heterogeneity between individuals, with strong effects for selected individuals, with stress reduction of up to 3 points on a 1 to 10 stress scale. Thirty-one participants benefited from the anti-stress exercises. Three (mindfulness breathing) and seven participants (box breathing) had a ≥70% probability for a daily stress reduction of ≥0.5 points and thereby fulfilled our responder criteria. Of the 17 participants who completed the follow-up survey about 4.5 months after completion of the individual N-of-1 trials, 58% reported that they felt they had benefited from the intervention and 42% planned to use it in the future. The results highlight the value of personalized perspectives: while the studied interventions showed only small positive benefits for the “average person”, they may well help actual individual persons, here 10 of 76 or even 31 of 76 participants.
医生面临着巨大的工作压力,这可能会损害他们的健康,增加医疗差错的风险,降低医疗质量,并增加医疗保健系统内的成本。在这项为期4周的干预研究中,76名德国住院医师在一系列N-of-1试验中评估了两种旨在减轻压力的简短且易于执行的呼吸练习的个人水平和人群水平效果。每天通过StudyU App以电子方式评估压力水平和第二天的预期压力水平(协议遵守率:91.9%)。采用贝叶斯线性回归模型估计平均干预效果。总体而言,它们在种群水平上很小,但在个体之间表现出很大的异质性,对选定的个体有很强的影响,在1到10的压力量表上,压力减轻了3分。31名参与者从抗压力锻炼中受益。3名参与者(正念呼吸)和7名参与者(箱式呼吸)的每日压力减轻≥0.5分的概率≥70%,从而满足我们的应答者标准。在完成N-of-1个体试验约4.5个月后完成随访调查的17名参与者中,58%的人报告说他们觉得自己从干预中受益,42%的人计划在未来使用它。研究结果强调了个性化视角的价值:虽然研究干预措施对“普通人”只有很小的积极作用,但它们可能很好地帮助了实际的个人,76名参与者中的10名,甚至31名。
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引用次数: 0
KT-LLM: an evidence-grounded and sequence text framework for auditable kidney transplant modeling KT-LLM:一个基于证据的序列文本框架,用于可审计的肾移植建模
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02323-5
Haofeng Zheng, Zihuan Luo, Kaiming He, Wangtianxu Zhou, Zhiyi Kong, Jieyi Dong, Qingfu Dai, Qiquan Sun
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引用次数: 0
The accuracy of Apple Watch measurements: a living systematic review and meta-analysis. 苹果手表测量的准确性:一个活生生的系统回顾和荟萃分析。
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02238-1
Rory Lambe,Maximus Baldwin,Ben O'Grady,Moritz Schumann,Brian Caulfield,Cailbhe Doherty
Apple Watch provides continuous monitoring of physiological and behavioural health metrics, increasingly used to support health-care delivery. Yet, evidence regarding its measurement accuracy remains limited. We aimed to assess the accuracy of measurements from Apple Watch. We searched nine databases from inception to September 24, 2025, with no restrictions on language or publication type. Eligible studies validated any Apple Watch health metric against a criterion method. The primary outcome was the agreement between Apple Watch and the criterion. We included 82 studies, which assessed 14 health metrics (430,052 participants; pooled mean age 41.3 years [SD 13.3]). Bland-Altman meta-analysis showed a small underestimation of heart rate, although limits of agreement (LoA) indicated moderate measurement variability (mean bias -0.27 bpm [95% CI -0.72-0.17]; LoA -7.19 to 6.64). For atrial fibrillation detection, Apple Watch was more specific than sensitive (specificity 0.91 [95% CI 0.81-0.96]; sensitivity 0.79 [95% CI 0.61-0.90]). For blood oxygen saturation, there was low mean bias (-0.04% [95% CI -0.42-0.35]) but wide limits of agreement (-4.00 to 3.94). Accuracy for sleep and step count was moderate, whereas error for energy expenditure was inconsistent and frequently large. Measurement accuracy varied by metric, measurement conditions, and individual physiology. Longitudinal validation of key clinical metrics, including vital signs, is needed to inform clinical practice and policy. This study was registered with PROSPERO, CRD42023481841.
Apple Watch提供对生理和行为健康指标的持续监测,越来越多地用于支持医疗保健服务。然而,关于其测量精度的证据仍然有限。我们的目的是评估Apple Watch测量的准确性。我们检索了9个数据库,从成立到2025年9月24日,没有语言和出版类型的限制。符合条件的研究根据标准方法验证了Apple Watch的任何健康指标。主要结果是Apple Watch与标准之间的一致。我们纳入了82项研究,评估了14项健康指标(430,052名参与者,合并平均年龄41.3岁[SD 13.3])。Bland-Altman荟萃分析显示心率有轻微低估,尽管一致性限(LoA)显示中度测量变异性(平均偏差-0.27 bpm [95% CI -0.72-0.17]; LoA -7.19至6.64)。对于心房颤动的检测,Apple Watch的特异度大于敏感性(特异性0.91 [95% CI 0.81-0.96];敏感性0.79 [95% CI 0.61-0.90])。对于血氧饱和度,平均偏差较低(-0.04% [95% CI -0.42-0.35]),但一致性范围较广(-4.00至3.94)。睡眠和步数的准确性中等,而能量消耗的误差不一致,而且经常很大。测量精度因度量、测量条件和个体生理而异。需要对包括生命体征在内的关键临床指标进行纵向验证,以便为临床实践和政策提供信息。本研究注册号为PROSPERO, CRD42023481841。
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引用次数: 0
Structure-aware multi-task learning with domain generalization for robust vertebrae analysis in spinal CT 基于领域泛化的结构感知多任务学习在脊柱CT鲁棒分析中的应用
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02288-5
Jianyang Du, Heng’an Ge, Rui Zhang, Zhenghan Chen, Yuxin Zhang, Yuqi Bai, Honghao Xu, Feng Ding, Yongchao Zhang, Juan Ye, Yihang Yang, Shaoshan Hu, Jingbiao Huang
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引用次数: 0
Multimodal intelligent prediction model for in vitro fertilization. 体外受精多模态智能预测模型。
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02331-5
Qiang Gao,Siqiong Yao,Dan Du,Fan Yang,Ping Yu,Shouneng Quan,Renyi Hua,Lihua Zhao,Anquan Shang,Hui Lu,Chaoyan Yue
Artificial intelligence has facilitated the automated selection of embryos and the prediction of pregnancy outcomes during in vitro fertilization (IVF), yet multimodal approaches remain underexplored-particularly for predicting multiple specific outcomes such as singleton pregnancy vs. multiple pregnancy, and miscarriage vs. live birth. In this study, we propose VaTEP (Video and Table model for Embryo Prediction), a multimodal embryo prediction model integrating time-lapse system (TLS) videos and tabular clinical variables. VaTEP is first pretrained on two pre-tasks (TLS video reconstruction and embryo developmental phase prediction) to fully capture the rich spatiotemporal dynamics and developmental information contained in the video, and further improved by a multiple frame sampling strategy and multitask learning framework. These designs enable VaTEP to estimate the probabilities of fetal heartbeat, singleton vs. multiple pregnancy, and miscarriage vs. live birth, promoting more informed embryo selection and outcome precognition. This helps reduce the risk of implantation failure by minimizing the chances of non-viable pregnancies, multiple gestations, and miscarriages. VaTEP offers a comprehensive and data-driven tool for personalized IVF decision-making, supporting safer and more effective reproductive treatment.
人工智能促进了体外受精(IVF)过程中胚胎的自动选择和妊娠结果的预测,但多模式方法仍未得到充分探索,特别是在预测多种特定结果方面,如单胎妊娠与多胎妊娠,流产与活产。在这项研究中,我们提出了VaTEP (Video and Table model for Embryo Prediction),这是一种结合延时系统(TLS)视频和表格临床变量的多模态胚胎预测模型。VaTEP首先在TLS视频重构和胚胎发育阶段预测两个预任务上进行预训练,充分捕捉视频中丰富的时空动态和发育信息,并通过多帧采样策略和多任务学习框架进一步改进。这些设计使VaTEP能够估计胎儿心跳、单胎与多胎妊娠、流产与活产的概率,促进更明智的胚胎选择和结果预知。这有助于降低着床失败的风险,最大限度地减少无法存活的怀孕,多胎妊娠和流产的机会。VaTEP为个性化试管婴儿决策提供了全面和数据驱动的工具,支持更安全、更有效的生殖治疗。
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引用次数: 0
Secure distributed multiple imputation enables missing data inference for private data proprietors. 安全的分布式多重输入为私有数据所有者提供了缺失数据推断。
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02271-0
Haris Smajlović,Yi Lian,Qi Long,Ibrahim Numanagić,Xiaoqian Jiang
Scattered between many healthcare providers across the US, Electronic Health Records (EHR) are extensively used for research purposes. Collaboration and sharing of EHRs between multiple institutions often provide access to more diverse datasets and a chance to conduct comprehensive studies. However, these collaboration efforts are usually hindered by privacy issues that render the pooling of such data at a centralized database impossible. Furthermore, EHRs are often incomplete and require statistical imputation prior to the study. To enable collaborative studies on top of incomplete, private EHRs, here we provide a provably secure solution built with secure multiparty computation (SMC) that provides practical runtimes and accuracy on par with the state-of-the-art, non-secure equivalents. Our solution enables the utilization of distributed datasets as a whole to impute the missing data and conduct collective studies between non-trusting private data proprietors. We demonstrate its effectiveness on various synthetic and real-world datasets, and show that our solution can significantly improve the classification of high-risk patient outcomes during ICU admission.
电子健康记录(EHR)分散在美国的许多医疗保健提供商之间,广泛用于研究目的。多个机构之间的电子病历协作和共享通常提供对更多样化数据集的访问,并有机会进行全面的研究。然而,这些协作努力通常受到隐私问题的阻碍,这些问题使得在集中式数据库中汇集这些数据变得不可能。此外,电子病历通常是不完整的,需要在研究之前进行统计归因。为了在不完整的私人电子病历之上进行协作研究,我们提供了一个可证明的安全解决方案,该解决方案采用安全多方计算(SMC)构建,可提供与最先进的非安全等效物相当的实际运行时间和准确性。我们的解决方案可以利用分布式数据集作为一个整体来计算缺失的数据,并在互不信任的私人数据所有者之间进行集体研究。我们在各种合成数据集和现实世界数据集上证明了其有效性,并表明我们的解决方案可以显着改善ICU入院时高危患者结局的分类。
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引用次数: 0
Towards human-centric intelligent treatment planning for radiation therapy 迈向以人为本的放射治疗智能治疗计划
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-026-02339-5
Adnan Jafar, Xun Jia
Current radiation therapy treatment planning is limited by suboptimal plan quality, inefficiency, and high costs. This perspective paper explores the complexity of treatment planning and introduces Human-Centric Intelligent Treatment Planning (HCITP), an AI-driven framework under human oversight, which integrates clinical guidelines, automates plan generation, and enables direct interaction with planners. We expect that HCITP will enhance efficiency, potentially reducing planning time to minutes, and will deliver personalized, high-quality plans. Challenges and potential solutions are discussed.
目前的放射治疗计划受到计划质量欠佳、效率低下和费用高的限制。这篇观点论文探讨了治疗计划的复杂性,并介绍了以人为中心的智能治疗计划(HCITP),这是一个人工智能驱动的框架,在人类的监督下,它集成了临床指南,自动生成计划,并实现了与计划者的直接互动。我们希望HCITP能够提高效率,将计划时间缩短到几分钟,并提供个性化的高质量计划。讨论了挑战和潜在的解决方案。
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引用次数: 0
Deep learning based volumetric analysis of infrarenal abdominal aortic aneurysms characterized on CTA 基于深度学习的CTA特征腹主动脉瘤体积分析
IF 15.2 1区 医学 Q1 HEALTH CARE SCIENCES & SERVICES Pub Date : 2026-01-10 DOI: 10.1038/s41746-025-02262-1
David Weiss, Thomas Hager, MingDe Lin, Durga Sritharan, Khaled Bousabarah, Daniel Renninghoff, Wolfgang Holler, Kathryn Simmons, Johannes Haubold, Sarah Loh, Uwe Fischer, Julius Chapiro, Cornelius Deuschl, Mariam Aboian, Edouard Aboian, Sanjay Aneja
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引用次数: 0
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NPJ Digital Medicine
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