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Machine Learning Prediction of On/Off Target-driven Clinical Adverse Events. 开/关目标驱动临床不良事件的机器学习预测。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-08-02 DOI: 10.1007/s11095-024-03742-x
Albert Cao, Luchen Zhang, Yingzi Bu, Duxin Sun

Objective: Currently, 90% of clinical drug development fails, where 30% of these failures are due to clinical toxicity. The current extensive animal toxicity studies are not predictive of clinical adverse events (AEs) at clinical doses, while current computation models only consider very few factors with limited success in clinical toxicity prediction. We aimed to address these issues by developing a machine learning (ML) model to directly predict clinical AEs.

Methods: Using a dataset with 759 FDA-approved drugs with known AEs, we first adapted the ConPLex ML model to predict IC 50 values of these FDA-approved drugs against their on-target and off-target binding among 477 protein targets. Subsequently, we constructed a new ML model to predict clinical AEs using IC 50 values of 759 drugs' primary on-target and off-target effects along with tissue-specific protein expression profiles.

Results: The adapted ConPLex model predicted drug-target interactions for both on- and off-target effects, as shown by co-localization of the 6 small molecule kinase inhibitors with their respective kinases. The coupled ML models demonstrated good predictive capability of clinical AEs, with accuracy over 75%.

Conclusions: Our approach provides a new insight into the mechanistic understanding of in vivo drug toxicity in relationship with drug on-/off-target interactions. The coupled ML models, once validated with larger datasets, may offer advantages to directly predict clinical AEs using in vitro/ex vivo and preclinical data, which will help to reduce drug development failure due to clinical toxicity.

目的:目前,90% 的临床药物开发都以失败告终,其中 30% 的失败是由于临床毒性造成的。目前大量的动物毒性研究并不能预测临床剂量下的临床不良事件(AEs),而目前的计算模型只考虑了极少数因素,在临床毒性预测方面的成功率有限。我们旨在通过开发一种机器学习(ML)模型来直接预测临床不良反应,从而解决这些问题:方法:利用包含 759 种已知 AE 的 FDA 批准药物的数据集,我们首先改进了 ConPLex ML 模型,以预测这些 FDA 批准药物与 477 个蛋白质靶点的靶上和靶下结合的 IC 50 值。随后,我们利用 759 种药物的主要靶上和非靶上效应的 IC 50 值以及组织特异性蛋白表达谱构建了一个新的 ML 模型来预测临床 AEs:结果:经过改良的ConPLex模型预测了药物与靶点之间的相互作用,包括靶上效应和非靶上效应,6种小分子激酶抑制剂与各自激酶的共定位显示了这一点。耦合 ML 模型对临床 AE 具有良好的预测能力,准确率超过 75%:我们的方法为从机理上理解体内药物毒性与药物靶上/靶下相互作用的关系提供了新的视角。一旦用更大的数据集进行验证,耦合 ML 模型可能会为利用体外/体内和临床前数据直接预测临床 AE 提供优势,这将有助于减少因临床毒性导致的药物开发失败。
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引用次数: 0
Accelerated Development of Pharmaceuticals Past, Present, and Future. 加速药品开发的过去、现在和未来。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-08-06 DOI: 10.1007/s11095-024-03737-8
Stephen R Byrn

This paper reviews the accelerated development of pharmaceuticals, exploring past, present, and future perspectives. It provides a historical overview of early strategies used to expedite development, beginning with initiatives from the 1990s. The work of Gardner and Byrn in accelerated development analysis during this era is highlighted. The narrative progresses to the 2000s, discussing the emergence of PK/PD in accelerating pharmaceutical development. The paper further examines case studies in the accelerated development field, including the INDIGO and Chorus programs. It concludes with an analysis of the current state of the field, referencing the NIPTE conference, which focused on the industrial perspective of accelerated development. Additionally, the paper outlines strategies for the rapid development of Solid Lipid Nanoparticle manufacturing and vaccine production.

本文回顾了药品的加速开发,探讨了过去、现在和未来的前景。它从历史角度概述了从 20 世纪 90 年代开始用于加速开发的早期战略。重点介绍了 Gardner 和 Byrn 在这一时期的加速开发分析工作。到了 2000 年代,本文讨论了 PK/PD 在加速药物开发中的应用。论文进一步探讨了加速开发领域的案例研究,包括 INDIGO 和 Chorus 计划。最后,论文分析了该领域的现状,并参考了 NIPTE 会议,该会议的重点是加速开发的工业视角。此外,论文还概述了固体脂质纳米粒子制造和疫苗生产的快速发展战略。
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引用次数: 0
Therapeutic Strategies to Combat Increasing Rates of Multidrug Resistant Pathogens. 应对耐多药病原体发病率不断上升的治疗策略。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-08-06 DOI: 10.1007/s11095-024-03756-5
Antonio Vitiello, Giovanni Rezza, Andrea Silenzi, Antonio Salzano, Mosè Alise, Maria Rosaria Boccellino, Annarita Ponzo, Andrea Zovi, Michela Sabbatucci

The emergence of antimicrobic-resistant infectious pathogens and the consequent rising in the incidence and prevalence of demises caused by or associated to infections which are not sensitive to drug treatments is one of today's major global health challenges. Antimicrobial resistance (AMR) can bring to therapeutic failure, infection's persistence and risk of serious illness, in particular in vulnerable populations such as the elderly, patients with neoplastic diseases or the immunocompromised. It is assessed that AMR will induce until 10 million deaths per year by 2050, becoming the leading cause of disease-related deaths. The World Health Organisation (WHO) and the United Nations General Assembly urgently call for new measures to combat the phenomenon. Research and development of new antimicrobial agents has decreased due to market failure. However, promising results are coming from new alternative therapeutic strategies such as monoclonal antibodies, microbiome modulators, nanomaterial-based therapeutics, vaccines, and phages. This narrative review aimed to analyse the benefits and weaknesses of alternative therapeutic strategies to antibiotics which treat multidrug-resistant bacterial infections.

抗菌性传染病病原体的出现,以及随之而来的由对药物治疗不敏感的感染引起或与之相关的死亡发生率和流行率的上升,是当今全球健康面临的主要挑战之一。抗菌药耐药性(AMR)会导致治疗失败、感染持续存在和严重疾病风险,尤其是在老年人、肿瘤疾病患者或免疫力低下者等易感人群中。据估计,到 2050 年,AMR 每年将导致 1 000 万人死亡,成为疾病相关死亡的主要原因。世界卫生组织(WHO)和联合国大会紧急呼吁采取新措施应对这一现象。由于市场失灵,新型抗菌剂的研发工作有所减少。然而,单克隆抗体、微生物组调节剂、基于纳米材料的疗法、疫苗和噬菌体等新的替代治疗策略正在取得可喜的成果。这篇叙述性综述旨在分析治疗耐多药细菌感染的抗生素替代疗法的优缺点。
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引用次数: 0
Evaluation of In Vitro Metabolism- and Transporter-Based Drug Interactions with Sunscreen Active Ingredients. 评估基于体外代谢和转运体的药物与防晒霜活性成分的相互作用。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-07-24 DOI: 10.1007/s11095-024-03746-7
Mohammed Qusa, Hisham Qosa, Donna A Volpe

Purpose: The aim of this study was to examine the ability of sunscreen active ingredients to inhibit in vitro drug metabolism via cytochrome P450 (CYP) enzymes and drug uptake transporters.

Methods: Metabolism assays with human liver microsomes were conducted for CYP2C9, CYP2D6 and CYP3A4 using probe substrates warfarin, bufuralol and midazolam, respectively. Uptake transporter assays with transfected cell lines were conducted for OAT3, OCT2 and OATP1B1 with probe substrates estrone-3-sulfate, metformin and rosuvastatin, respectively. Six sunscreen active ingredients, avobenzone, enzacamene, oxybenzone, octinoxate, trolamine, and homosalate, were evaluated up to their aqueous solubility limits in the assays.

Results: None of the sunscreen active ingredients inhibited CYP2D6 or CYP3A4 activities in the microsomes at concentration ranges up to tenfold higher than their known clinical total plasma levels. Only enzacamene, oxybenzone and trolamine were found to be inhibitory to CYP2C9 activity with IC50 values of 14.76, 22.46 and 154.7 µM, respectively. Avobenzone, enzacamene, homosalate and octinoxate were not inhibitory to the uptake transporters at the evaluated concentrations. Oxybenzone was inhibitory to OAT3 and OCT2 with IC50 values of 39.93 and 42.77 µM, respectively. Trolamine also inhibited uptake in OAT3 and OCT2 transfected cells with IC50 values of 448.1 and 1376 μM, respectively.

Conclusions: Although enzacamene, oxybenzone and trolamine inhibited CYP2C9 and the renal transporters OAT3 and OCT2 in vitro, their IC50 values exceeded total plasma levels found in clinical studies. Therefore, it is unlikely that these sunscreen active ingredients in sunscreen products will inhibit the metabolism or transport of co-administered drugs in consumers.

目的:本研究旨在考察防晒霜活性成分通过细胞色素 P450(CYP)酶和药物吸收转运体抑制体外药物代谢的能力:方法:分别使用探针底物华法林、布福洛尔和咪达唑仑,用人肝微粒体对 CYP2C9、CYP2D6 和 CYP3A4 进行代谢测定。利用转染细胞系对 OAT3、OCT2 和 OATP1B1 进行了摄取转运体检测,探针底物分别为 3-硫酸雌酮、二甲双胍和罗伐他汀。对六种防晒霜活性成分阿伏苯宗、恩扎卡门烯、氧苯甲酮、辛诺沙特、曲拉明和均沙酯进行了评估,评估结果达到了它们在试验中的水溶性极限:结果:没有一种防晒霜活性成分能抑制微粒体中的 CYP2D6 或 CYP3A4 活性,其浓度范围比已知的临床总血浆水平高出十倍。只有恩沙康、氧苯甲酮和曲拉明对 CYP2C9 活性有抑制作用,IC50 值分别为 14.76、22.46 和 154.7 µM。在评估浓度下,阿伏苯宗、恩扎卡门烯、高水杨酸酯和辛氧化酯对吸收转运体没有抑制作用。氧苯酮对 OAT3 和 OCT2 有抑制作用,IC50 值分别为 39.93 µM 和 42.77 µM。曲拉明也能抑制转染细胞中 OAT3 和 OCT2 的吸收,其 IC50 值分别为 448.1 微摩尔和 1376 微摩尔:结论:虽然恩杂卡明、羟苯甲酮和曲拉明在体外抑制了 CYP2C9 以及肾脏转运体 OAT3 和 OCT2,但它们的 IC50 值超过了临床研究中发现的血浆总水平。因此,防晒产品中的这些防晒活性成分不太可能抑制消费者体内合用药物的代谢或转运。
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引用次数: 0
Fluorinated PAMAM-Arginine Carrier Prodrugs for pH-Sensitive Sustained Ibuprofen Delivery. 氟化 PAMAM-精氨酸载体原药用于 pH 值敏感的布洛芬持续给药。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-07-24 DOI: 10.1007/s11095-024-03747-6
Carola Romani, Mattia Sponchioni, Alessandro Volonterio

Objective: The development of an efficient, multifunctional drug delivery system overcoming different obstacles generally associated with drug formulations, including the poor accumulation of the active principle in the target site and its sustained release for prolonged time.

Methods: Our study proposes the development of a fluorinated poly(amidoamine) (PAMAM) carrier prodrug combining drug release boosted in alkaline environments with a possible implementation in 19F MRI applications. In particular, we functionalized the terminal primary amines of PAMAM G2 and G4 through an ad hoc designed fluorinated ibuprofen-arginine Michael acceptor to obtain multifunctional ibuprofen-PAMAM-Arg conjugates.

Results: These carriers demonstrated pH-dependent and sustained ibuprofen release for more than 5 days. This advantage was observed in both weak alkaline and physiological buffer solutions, allowing to overcome the limits associated to the burst release from similar fluorinated Arg-PAMAM dendrimers with ibuprofen physically encapsulated.

Conclusion: These findings, coupled to the high biocompatibility of the system, suggest a potential synergistic biomedical application of our conjugates, serving as vehicles for drug delivery and as 19F magnetic resonance imaging contrast agents.

目的开发一种高效、多功能的给药系统,克服药物制剂通常存在的各种障碍,包括活性成分在靶点的蓄积性差和长时间的持续释放:我们的研究提出开发一种含氟聚(氨基胺)(PAMAM)载体原药,它能在碱性环境中促进药物释放,并有可能应用于 19F MRI。特别是,我们通过特别设计的氟化布洛芬-精氨酸迈克尔受体对 PAMAM G2 和 G4 的末端伯胺进行了官能化,从而获得了多功能布洛芬-PAMAM-Arg 共轭物:这些载体显示了布洛芬在 5 天以上的 pH 依赖性和持续释放。在弱碱性溶液和生理缓冲溶液中都能观察到这一优势,从而克服了类似的氟化 Arg-PAMAM 树枝状聚合物在布洛芬物理包封后的猝灭释放限制:这些发现以及该系统的高生物相容性表明,我们的共轭物具有潜在的协同生物医学应用前景,既可作为药物输送载体,也可作为 19F 磁共振成像对比剂。
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引用次数: 0
Comment on the article: In vivo Pharmacokinetics/Pharmacodynamics Profiles for Appropriate Doses of Cefditoren pivoxil against S. pneumoniae in Murine Lung-Infection Model. 致编辑的信
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-07-13 DOI: 10.1007/s11095-024-03729-8
M J Giménez, L Aguilar, L Alou, D Sevillano
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引用次数: 0
Development of a New Dry Powder Aerosol Synthetic Lung Surfactant Product for Neonatal Respiratory Distress Syndrome (RDS) - Part I: In Vitro Testing and Characterization. 开发治疗新生儿呼吸窘迫综合征 (RDS) 的新型干粉气雾剂合成肺表面活性剂产品--第一部分:体外测试和表征。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-08-07 DOI: 10.1007/s11095-024-03740-z
Mohammad A M Momin, Dale Farkas, Michael Hindle, Felicia Hall, Robert M DiBlasi, Worth Longest

Purpose: Improving the deep lung delivery of aerosol surfactant therapy (AST) with a dry powder formulation may enable significant reductions in dose while providing improved efficacy. The objective of Part I of this two-part study was to present the development of a new dry powder aerosol synthetic lung surfactant (SLS) product and to characterize performance based on aerosol formation and realistic in vitro airway testing leading to aerosol delivery recommendations for subsequent in vivo animal model experiments.

Methods: A new micrometer-sized SLS excipient enhanced growth (EEG) dry powder formulation was produced via spray drying and aerosolized using a positive-pressure air-jet dry powder inhaler (DPI) intended for aerosol delivery directly to intubated infants with respiratory distress syndrome (RDS) or infant-size test animals.

Results: The best-case design (D2) of the air-jet DPI was capable of high emitted dose (> 80% of loaded) and formed a < 2 µm mass median aerodynamic diameter (MMAD) aerosol, but was limited to ≤ 20 mg mass loadings. Testing with a realistic in vitro rabbit model indicated that over half of the loaded dose could penetrate into the lower lung regions. Using the characterization data, a dose delivery protocol was designed in which a 60 mg total loaded dose would be administered and deliver an approximate lung dose of 14.7-17.7 mg phospholipids/kg with a total aerosol delivery period < 5 min.

Conclusions: A high-efficiency aerosol SLS product was designed and tested that may enable an order of magnitude reduction in administered phospholipid dose, and provide rapid aerosol administration to infants with RDS.

目的:使用干粉配方改善气溶胶表面活性物质疗法(AST)的肺深部给药,可在提高疗效的同时显著减少剂量。本研究由两部分组成,第一部分的目的是介绍新型干粉气溶胶合成肺表面活性物质(SLS)产品的开发情况,并根据气溶胶形成和实际体外气道测试对其性能进行表征,从而为随后的体内动物模型实验提出气溶胶给药建议:方法:通过喷雾干燥法生产了一种新的微米级 SLS 辅料增强生长(EEG)干粉配方,并使用正压喷气式干粉吸入器(DPI)进行气溶胶化,以便直接将气溶胶输送给患有呼吸窘迫综合征(RDS)的插管婴儿或婴儿大小的试验动物:喷气式干粉吸入器的最佳设计(D2)能达到很高的喷射剂量(> 80%),并形成了一个结论:设计并测试了一种高效气溶胶 SLS 产品,该产品可将磷脂的给药剂量减少一个数量级,并为患有 RDS 的婴儿提供快速气溶胶给药。
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引用次数: 0
Tolterodine Tartrate Loaded Cationic Elastic Liposomes for Transdermal Delivery: In Vitro, Ex Vivo, and In Vivo Evaluations. 用于透皮给药的酒石酸托特罗定负载阳离子弹性脂质体:体外、体内和体内评估。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-07-24 DOI: 10.1007/s11095-024-03741-y
Mohhammad Ramzan, Afzal Hussain, Tasneem Khan, Mohd Usman Mohd Siddique, Musarrat Husain Warsi

Objective: Tolterodine tartrate (TOTA) is a first-line therapy to treat overactive urinary bladder (OAB). Oral delivery causes high hepatic clearance, xerostomia, headache, constipation, and blurred vision. We addressed Hansen solubility parameter (HSP) and Design Expert oriented optimized cationic elastic liposomes for transdermal application.

Methods: The experimental solubility was conducted in HSPiP predicted excipients to tailor formulations using surfactants, stearylamine, ethanol, and phosphatidylcholine (PC). These were evaluated for formulation characteristics. The optimized OTEL1 and OTEL1-G (gel) were compared against the drug solution (DS) and liposomes. In vitro and ex vivo studies were accomplished to investigate the insights into the mechanistic understanding of TOTA release and permeation ability. Finally, confocal laser scanning microscopy (CLSM) supported ex vivo results.

Results: HSP values of TOTA were closely related to tween-80, stearylamine, and human's skin. The size (153 nm), %EE (87.6%), and PDI (0.25) values of OTEL1 were in good agreement to the predicted values (161 nm, 80.4%, and 0.31) with high desirability (0.963). Spherical and smooth OTEL1 (including OTEL1-G and liposomes) vesicles followed non-Fickian drug release as compared to DS (Fickian) as evidence with n > 0.5 (Korsmeyer and Peppas coefficient). OTEL1 (containing lipid and surfactant as 90 mg and 13.8 mg, respectively) exhibited 2.6 and 1.8-folds higher permeation flux than DS and liposomes, respectively. Biocompatible cationic OTEL1 was safe and non-hemolytic.

Conclusions: OTEL1 was promised as a lead vesicular approach and an alternative to conventional oral therapy to treat OAB in children and advanced age patients.

目的:酒石酸托特罗定(TOTA)是治疗膀胱过度活动症(OAB)的一线疗法。口服给药会导致较高的肝清除率、口干、头痛、便秘和视力模糊。我们研究了汉森溶解度参数(HSP),并以设计专家为导向,优化了阳离子弹性脂质体的透皮应用:方法:利用汉森溶解度参数(HSPiP)预测辅料的实验溶解度,使用表面活性剂、硬脂胺、乙醇和磷脂酰胆碱(PC)定制配方。对这些辅料的配方特性进行了评估。将优化后的 OTEL1 和 OTEL1-G(凝胶)与药物溶液(DS)和脂质体进行了比较。为了深入了解 TOTA 释放和渗透能力的机理,还进行了体外和体内研究。最后,共焦激光扫描显微镜(CLSM)为体内外研究结果提供了支持:结果:TOTA 的 HSP 值与吐温-80、硬脂胺和人体皮肤密切相关。OTEL1 的尺寸(153 nm)、%EE(87.6%)和 PDI(0.25)值与预测值(161 nm、80.4% 和 0.31)非常吻合,可取性高(0.963)。球形和光滑的 OTEL1(包括 OTEL1-G 和脂质体)囊泡与 DS(费克)囊泡相比遵循非费克药物释放,n > 0.5(Korsmeyer 和 Peppas 系数)即为证据。OTEL1(分别含有 90 毫克脂质和 13.8 毫克表面活性剂)的渗透通量分别比 DS 和脂质体高 2.6 倍和 1.8 倍。生物相容性阳离子 OTEL1 安全且不溶血:OTEL1有望成为治疗儿童和高龄患者OAB的主要囊泡方法和传统口服疗法的替代品。
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引用次数: 0
The Impact of Annealing Methods on the Encapsulating Structure and Storage-Stability of Freeze-Dried Pellets of Probiotic Bacteria. 退火方法对冻干益生菌颗粒的封装结构和储存稳定性的影响
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-07-29 DOI: 10.1007/s11095-024-03751-w
Shuai Bai Palmkron, Björn Bergenståhl, Stephen Hall, Sebastian Håkansson, Marie Wahlgren, Emanuel Larsson, Anna Millqvist Fureby

Objective: This paper investigates the critical role of material thickness in freeze-dried pellets for enhancing the storage stability of encapsulated bacteria. Freeze dried material of varying thicknesses obtained from different annealing durations is quantified using Scanning Electron Microscopy (SEM) and X-ray microtomography (μCT), the material thickness is then correlated to the storage stability of the encapsulated cells.

Methods: A formulation comprising of sucrose, maltodextrin, and probiotic cells is quenched in liquid nitrogen to form pellets. The pellets undergo different durations of annealing before undergoing freeze-drying. The material thickness is quantified using SEM and μCT. Storage stability in both oxygen-rich and oxygen-poor environments is evaluated by measuring CFU counts and correlated with the pellet structure.

Results: The varying annealing protocols produce a range of material thicknesses, with more extensive annealing resulting in thicker materials. Storage stability exhibits a positive correlation with material thickness, indicating improved stability with thicker materials. Non-annealed pellets exhibit structural irregularities and inconsistent storage stability, highlighting the impracticality of avoiding annealing in the freeze-drying process.

Conclusions: Extensive annealing not only enhances the storage stability of probiotic products but also provides greater control over the freeze-drying process, ensuring homogeneous and reproducible products. This study underscores the importance of material thickness in freeze-dried pellets for optimizing storage stability for probiotic formulations, and emphasize the necessity of annealing as a critical step in freeze-drying quenched pellets to achieve desired structural and stability outcomes.

目的:本文研究了冷冻干燥颗粒中材料厚度对提高封装细菌储存稳定性的关键作用。使用扫描电子显微镜(SEM)和 X 射线显微层析成像(μCT)对不同退火时间获得的不同厚度的冻干材料进行量化,然后将材料厚度与封装细胞的储存稳定性联系起来:方法:由蔗糖、麦芽糊精和益生菌细胞组成的配方在液氮中淬火形成颗粒。在进行冷冻干燥之前,颗粒要经过不同时间的退火处理。使用 SEM 和 μCT 对材料厚度进行量化。在富氧和缺氧环境中的储存稳定性通过测量 CFU 计数进行评估,并与颗粒结构相关联:结果:不同的退火方案会产生不同厚度的材料,退火范围越广,材料越厚。储存稳定性与材料厚度呈正相关,表明材料越厚稳定性越好。未经退火的颗粒结构不规则,储存稳定性也不稳定,这说明在冷冻干燥过程中避免退火是不切实际的:大面积退火不仅能提高益生菌产品的储存稳定性,还能更好地控制冻干过程,确保产品的均匀性和可重复性。这项研究强调了冷冻干燥颗粒中材料厚度对优化益生菌配方储存稳定性的重要性,并强调了退火作为冷冻干燥淬火颗粒的关键步骤对实现理想的结构和稳定性结果的必要性。
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引用次数: 0
Comparison of Relative Activity versus Relative Expression Factors (RAF versus REF) in Predicting Glucuronidation Mediated Drug Clearance Using Recombinant UGTs. 使用重组 UGTs 预测葡萄糖醛酸化介导的药物清除率时相对活性与相对表达因子(RAF 与 REF)的比较。
IF 3.5 3区 医学 Q2 CHEMISTRY, MULTIDISCIPLINARY Pub Date : 2024-08-01 Epub Date: 2024-08-06 DOI: 10.1007/s11095-024-03750-x
Sandhya Subash, Deepak Ahire, Mitesh Patel, Sahil Shaikh, Dilip Kumar Singh, Sujal Deshmukh, Bhagwat Prasad

Purpose: Predicting the quantitative fraction of glucuronidation (fgluc) by individual UDP-glucuronosyltransferase enzymes (UGTs) is challenging due to the lack of selective inhibitors and inconsistent activity of recombinant UGT systems (rUGTs). Our study compares the relative expression versus activity factors (REF versus RAF) to predict fgluc based on rUGT data to human liver and intestinal microsomes (HLM and HIM).

Methods: REF scalars were derived from a previous in-house proteomics study for eleven UGT enzymes (UGT1A1, UGT1A3, UGT1A4, UGT1A6, UGT1A9, UGT1A10, UGT2B4, UGT2B7, UGT2B10, UGT2B15, and UGT2B17), whereas RAF was calculated by measuring activities in rUGTs to microsomes of selective UGT probe substrates. Protein-normalized activity factor (pnAF) values were generated after correcting activity of individual UGTs to their corresponding protein abundance. The utility of REF and RAF in predicting fgluc was assessed for three UGT substrates-diclofenac, vorinostat, and raltegravir.

Results: The REF values ranged from 0.02 to 1.75, RAF based on activity obtained in rUGTs to HLM/HIM were from 0.1 to 274. pnAF values were ~ 5 to 80-fold, except for UGT2B4 and UGT2B15, where pnAF was ~ 180 and > 1000, respectively. The results revealed confounding effect of differential specific activities (per pmol) of rUGTs in fgluc prediction.

Conclusion: The data suggest that the activity of UGT enzymes was significantly lower when compared to their activity in microsomes at the same absolute protein amount (pmol). Collectively, results of this study demonstrate poor and variable specific activity of different rUGTs (per pmol protein), as determined by pnAF values, which should be considered in fgluc scaling.

目的:由于缺乏选择性抑制剂和重组 UGT 系统(rUGT)的活性不一致,预测单个 UDP-葡萄糖醛酸转移酶(UGT)的葡萄糖醛酸化定量部分(fgluc)具有挑战性。我们的研究根据人类肝脏和肠道微粒体(HLM 和 HIM)的 rUGT 数据,比较了预测 fgluc 的相对表达与活性因子(REF 与 RAF):REF标度来自于之前对11种UGT酶(UGT1A1、UGT1A3、UGT1A4、UGT1A6、UGT1A9、UGT1A10、UGT2B4、UGT2B7、UGT2B10、UGT2B15和UGT2B17)进行的内部蛋白质组学研究,而RAF则是通过测量rUGT对选择性UGT探针底物的微粒体的活性计算得出的。蛋白质归一化活性因子(pnAF)值是将单个 UGT 的活性与其相应的蛋白质丰度进行校正后得出的。针对三种 UGT 底物--双氯芬酸、伏立诺他和雷替格韦,评估了 REF 和 RAF 在预测 fgluc 方面的实用性:除 UGT2B4 和 UGT2B15 的 pnAF 分别为 180 和 1000 倍以外,其他 UGT 底物的 pnAF 值在 5 至 80 倍之间。结果表明,在预测 fgluc 的过程中,rUGTs 不同的特异性活性(每 pmol)会产生混淆效应:数据表明,在蛋白质绝对量(pmol)相同的情况下,UGT 酶的活性明显低于其在微粒体中的活性。总之,这项研究的结果表明,由 pnAF 值确定的不同 rUGT(每 pmol 蛋白)的特异性活性较低且不尽相同,这一点应在 fgluc 预测中加以考虑。
{"title":"Comparison of Relative Activity versus Relative Expression Factors (RAF versus REF) in Predicting Glucuronidation Mediated Drug Clearance Using Recombinant UGTs.","authors":"Sandhya Subash, Deepak Ahire, Mitesh Patel, Sahil Shaikh, Dilip Kumar Singh, Sujal Deshmukh, Bhagwat Prasad","doi":"10.1007/s11095-024-03750-x","DOIUrl":"10.1007/s11095-024-03750-x","url":null,"abstract":"<p><strong>Purpose: </strong>Predicting the quantitative fraction of glucuronidation (f<sub>gluc</sub>) by individual UDP-glucuronosyltransferase enzymes (UGTs) is challenging due to the lack of selective inhibitors and inconsistent activity of recombinant UGT systems (rUGTs). Our study compares the relative expression versus activity factors (REF versus RAF) to predict f<sub>gluc</sub> based on rUGT data to human liver and intestinal microsomes (HLM and HIM).</p><p><strong>Methods: </strong>REF scalars were derived from a previous in-house proteomics study for eleven UGT enzymes (UGT1A1, UGT1A3, UGT1A4, UGT1A6, UGT1A9, UGT1A10, UGT2B4, UGT2B7, UGT2B10, UGT2B15, and UGT2B17), whereas RAF was calculated by measuring activities in rUGTs to microsomes of selective UGT probe substrates. Protein-normalized activity factor (pnAF) values were generated after correcting activity of individual UGTs to their corresponding protein abundance. The utility of REF and RAF in predicting f<sub>gluc</sub> was assessed for three UGT substrates-diclofenac, vorinostat, and raltegravir.</p><p><strong>Results: </strong>The REF values ranged from 0.02 to 1.75, RAF based on activity obtained in rUGTs to HLM/HIM were from 0.1 to 274. pnAF values were ~ 5 to 80-fold, except for UGT2B4 and UGT2B15, where pnAF was ~ 180 and > 1000, respectively. The results revealed confounding effect of differential specific activities (per pmol) of rUGTs in f<sub>gluc</sub> prediction.</p><p><strong>Conclusion: </strong>The data suggest that the activity of UGT enzymes was significantly lower when compared to their activity in microsomes at the same absolute protein amount (pmol). Collectively, results of this study demonstrate poor and variable specific activity of different rUGTs (per pmol protein), as determined by pnAF values, which should be considered in f<sub>gluc</sub> scaling.</p>","PeriodicalId":20027,"journal":{"name":"Pharmaceutical Research","volume":" ","pages":"1621-1630"},"PeriodicalIF":3.5,"publicationDate":"2024-08-01","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141898015","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":3,"RegionCategory":"医学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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Pharmaceutical Research
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