Pub Date : 2024-06-11DOI: 10.1103/physreve.109.064608
Yuya Shinohara, T. Iwashita, Masahiro Nakanishi, Wojciech Dmowski, Chae Woo Ryu, D. Abernathy, D. Ishikawa, Alfred Q. R. Baron, Takeshi Egami
{"title":"Real-space local self-motion of protonated and deuterated water","authors":"Yuya Shinohara, T. Iwashita, Masahiro Nakanishi, Wojciech Dmowski, Chae Woo Ryu, D. Abernathy, D. Ishikawa, Alfred Q. R. Baron, Takeshi Egami","doi":"10.1103/physreve.109.064608","DOIUrl":"https://doi.org/10.1103/physreve.109.064608","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":"78 23","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141357734","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.1103/physreve.109.064404
O. V. Kondrashov, S. Akimov
{"title":"Gramicidin A as a mechanical sensor for mixed nonideal lipid membranes","authors":"O. V. Kondrashov, S. Akimov","doi":"10.1103/physreve.109.064404","DOIUrl":"https://doi.org/10.1103/physreve.109.064404","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":"81 15","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141359881","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-11DOI: 10.1103/physreve.109.064305
Roozbeh H. Pazuki, Robert G. Endres
Traditional linear stability analysis based on matrix diagonalization is a computationally intensive process for high-dimensional systems of differential equations, posing substantial limitations for the exploration of Turing systems of pattern formation where an additional wave-number parameter needs to be investigated. In this paper, we introduce an efficient and intuitive technique that leverages Gershgorin's theorem to determine upper limits on regions of parameter space and the wave number beyond which Turing instabilities cannot occur. This method offers a streamlined avenue for exploring the phase diagrams of other complex multi-parametric models, such as those found in gene regulatory networks in systems biology. Due to its suitability for the asymptotic limit of infinitely large systems, it predicts the existence of a sweet spot in network size for maximal Jacobian stability. Published by the American Physical Society 2024
{"title":"Robustness of Turing models and gene regulatory networks with a sweet spot","authors":"Roozbeh H. Pazuki, Robert G. Endres","doi":"10.1103/physreve.109.064305","DOIUrl":"https://doi.org/10.1103/physreve.109.064305","url":null,"abstract":"Traditional linear stability analysis based on matrix diagonalization is a computationally intensive process for high-dimensional systems of differential equations, posing substantial limitations for the exploration of Turing systems of pattern formation where an additional wave-number parameter needs to be investigated. In this paper, we introduce an efficient and intuitive technique that leverages Gershgorin's theorem to determine upper limits on regions of parameter space and the wave number beyond which Turing instabilities cannot occur. This method offers a streamlined avenue for exploring the phase diagrams of other complex multi-parametric models, such as those found in gene regulatory networks in systems biology. Due to its suitability for the asymptotic limit of infinitely large systems, it predicts the existence of a sweet spot in network size for maximal Jacobian stability.\u0000 \u0000 \u0000 \u0000 \u0000 Published by the American Physical Society\u0000 2024\u0000 \u0000 \u0000","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":"5 9","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-11","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141356896","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-10DOI: 10.1103/physreve.109.064607
Tanay Paul, Nalina Vadakkayil, Subir K. Das
{"title":"Finite-size scaling in kinetics of phase separation in certain models of aligning active particles","authors":"Tanay Paul, Nalina Vadakkayil, Subir K. Das","doi":"10.1103/physreve.109.064607","DOIUrl":"https://doi.org/10.1103/physreve.109.064607","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":"120 30","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141362509","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-10DOI: 10.1103/physreve.109.065103
A. Samanta
{"title":"Insights on phase speed and the critical Reynolds number of falling films","authors":"A. Samanta","doi":"10.1103/physreve.109.065103","DOIUrl":"https://doi.org/10.1103/physreve.109.065103","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":" 823","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141363930","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-07DOI: 10.1103/physreve.109.065002
SangMin Lee, Richard L. Weaver
{"title":"Slow dynamic elasticity at short times","authors":"SangMin Lee, Richard L. Weaver","doi":"10.1103/physreve.109.065002","DOIUrl":"https://doi.org/10.1103/physreve.109.065002","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":" 1","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141371813","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
Pub Date : 2024-06-07DOI: 10.1103/physreve.109.064120
Felipe Hawthorne, B. Cleuren, Carlos E. Fiore
{"title":"Thermodynamics of a minimal interacting heat engine: Comparison between engine designs","authors":"Felipe Hawthorne, B. Cleuren, Carlos E. Fiore","doi":"10.1103/physreve.109.064120","DOIUrl":"https://doi.org/10.1103/physreve.109.064120","url":null,"abstract":"","PeriodicalId":20174,"journal":{"name":"Physical Review E","volume":" 28","pages":""},"PeriodicalIF":0.0,"publicationDate":"2024-06-07","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"141372550","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":0,"RegionCategory":"","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
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