首页 > 最新文献

Plant Signaling & Behavior最新文献

英文 中文
Stimulatory effects of smoke solution and biogas digestate slurry application on photosynthesis, growth, and methylation profiling of solanum tuberosum 施用烟雾溶液和沼气沼渣浆液对块茎茄光合作用、生长和甲基化分析的促进作用
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-10 DOI: 10.1080/15592324.2024.2336724
Rafi Ullah Khan, Irfan Ullah, Ghazal Khurshid, Sultan Suboktagin, Abdul Rehman Khan, Iftikhar Zeb, Zahid Ahmad Khan, Muhammad Jamil, Eui Shik Rha, Hayssam Muhammad Ali, Raza Ahmad
Biostimulants are obtained from various sources like plants, animals, microorganisms, and industrial by-products as well as waste material. Their utilization in agriculture practices is being incre...
生物刺激素的来源多种多样,如植物、动物、微生物、工业副产品以及废料。生物刺激剂在农业实践中的使用正在不断增加...
{"title":"Stimulatory effects of smoke solution and biogas digestate slurry application on photosynthesis, growth, and methylation profiling of solanum tuberosum","authors":"Rafi Ullah Khan, Irfan Ullah, Ghazal Khurshid, Sultan Suboktagin, Abdul Rehman Khan, Iftikhar Zeb, Zahid Ahmad Khan, Muhammad Jamil, Eui Shik Rha, Hayssam Muhammad Ali, Raza Ahmad","doi":"10.1080/15592324.2024.2336724","DOIUrl":"https://doi.org/10.1080/15592324.2024.2336724","url":null,"abstract":"Biostimulants are obtained from various sources like plants, animals, microorganisms, and industrial by-products as well as waste material. Their utilization in agriculture practices is being incre...","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140589554","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Unveiling kiwifruit TCP genes: evolution, functions, and expression insights 揭开猕猴桃 TCP 基因的面纱:进化、功能和表达见解
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-10 DOI: 10.1080/15592324.2024.2338985
Donglin Li, Haibo Li, Huimin Feng, Ping Qi, Zhicheng Wu
The TEOSINTE-BRANCHED1/CYCLOIDEA/PROLEFERATING-CELL-FACTORS (TCP) gene family is a plant-specific transcriptional factor family involved in leaf morphogenesis and senescence, lateral branching, hor...
TEOSINTE-BRANCHED1/CYCLOIDEA/PROLEFERATING-CELL-FACTORS(TCP)基因家族是一个植物特异性转录因子家族,参与叶片的形态发生和衰老、侧枝、角质层的形成和分化。
{"title":"Unveiling kiwifruit TCP genes: evolution, functions, and expression insights","authors":"Donglin Li, Haibo Li, Huimin Feng, Ping Qi, Zhicheng Wu","doi":"10.1080/15592324.2024.2338985","DOIUrl":"https://doi.org/10.1080/15592324.2024.2338985","url":null,"abstract":"The TEOSINTE-BRANCHED1/CYCLOIDEA/PROLEFERATING-CELL-FACTORS (TCP) gene family is a plant-specific transcriptional factor family involved in leaf morphogenesis and senescence, lateral branching, hor...","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-10","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140589579","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Synergistic interplay between melatonin and hydrogen sulfide enhances cadmium-induced oxidative stress resistance in stock (Matthiola incana L.) 褪黑激素和硫化氢之间的协同作用可增强镉诱导的库存(Matthiola incana L.)氧化应激抵抗力
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-04-02 DOI: 10.1080/15592324.2024.2331357
Faisal Zulfiqar, Anam Moosa, Hayssam M. Ali, John T. Hancock, Jean Wan Hong Yong
Ornamental crops particularly cut flowers are considered sensitive to heavy metals (HMs) induced oxidative stress condition. Melatonin (MLT) is a versatile phytohormone with the ability to mitigate...
观赏作物,尤其是切花,被认为对重金属(HMs)诱导的氧化应激条件非常敏感。褪黑激素(MLT)是一种多用途植物激素,具有减轻氧化应激的能力。
{"title":"Synergistic interplay between melatonin and hydrogen sulfide enhances cadmium-induced oxidative stress resistance in stock (Matthiola incana L.)","authors":"Faisal Zulfiqar, Anam Moosa, Hayssam M. Ali, John T. Hancock, Jean Wan Hong Yong","doi":"10.1080/15592324.2024.2331357","DOIUrl":"https://doi.org/10.1080/15592324.2024.2331357","url":null,"abstract":"Ornamental crops particularly cut flowers are considered sensitive to heavy metals (HMs) induced oxidative stress condition. Melatonin (MLT) is a versatile phytohormone with the ability to mitigate...","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-04-02","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140589739","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Effects of acid and aluminum stress on seed germination and physiological characteristics of seedling growth in Sophora davidii 酸和铝胁迫对大叶槐种子萌发和幼苗生长生理特性的影响
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2024-03-20 DOI: 10.1080/15592324.2024.2328891
Sisi Long, Wenhui Xie, Wenwu Zhao, Danyang Liu, Puchang Wang, Lili Zhao
Sophora davidii, a vital forage species, predominantly thrives in the subtropical karst mountains of Southwest China. Its resilience to poor soil conditions and arid environments renders it an idea...
大叶槐是一种重要的饲料树种,主要生长在中国西南部的亚热带喀斯特山区。它对贫瘠土壤条件和干旱环境的适应能力使其成为一种理想的牧草。
{"title":"Effects of acid and aluminum stress on seed germination and physiological characteristics of seedling growth in Sophora davidii","authors":"Sisi Long, Wenhui Xie, Wenwu Zhao, Danyang Liu, Puchang Wang, Lili Zhao","doi":"10.1080/15592324.2024.2328891","DOIUrl":"https://doi.org/10.1080/15592324.2024.2328891","url":null,"abstract":"Sophora davidii, a vital forage species, predominantly thrives in the subtropical karst mountains of Southwest China. Its resilience to poor soil conditions and arid environments renders it an idea...","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2024-03-20","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"140169688","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Genome-wide identification and expression analysis of the CBF transcription factor family in Lolium perenne under abiotic stress. 非生物胁迫条件下欧洲旱金莲 CBF 转录因子家族的全基因组鉴定和表达分析。
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2022-06-17 DOI: 10.1080/15592324.2022.2086733
Dan Wang, Binyu Cui, Hanyu Guo, Yaxi Liu, Shuming Nie

C-repeat binding factor (CBF) subfamily genes encoding transcriptional activators are members of the AP2/ERF superfamily. CBFs play important roles in plant tolerance to abiotic stress. In this study, we identified and analyzed the structure, phylogeny, conserved motifs, and expression profiles of 12 CBFs of the grass species Lolium perenne cultured under abiotic stress. The identified LpCBFs were grouped into three phylogenetic clades according to their protein structures and motif organizations. LpCBF expression was differentially induced by cold, heat, water deficit, salinity, and abscisic acid, among which cold treatment induced LpCBF gene expression significantly. Furthermore, association network analysis indicated that different proteins, including certain stress-related proteins, potentially interact with LpCBFs. Altogether, these findings will enhance our understanding of LpCBFs protein structure and function in the regulation of L. perenne stress responses. Our results will provide valuable information for further functional research of LpCBF proteins in L. perenne stress resistance.

编码转录激活因子的 C-重复结合因子(CBF)亚家族基因是 AP2/ERF 超家族的成员。CBF 在植物耐受非生物胁迫方面发挥着重要作用。在本研究中,我们鉴定并分析了在非生物胁迫下培养的禾本科植物 Lolium perenne 的 12 个 CBFs 的结构、系统发育、保守基序和表达谱。根据蛋白质结构和基序组织,将已鉴定的 LpCBFs 分成三个系统发育支系。冷、热、缺水、盐度和赤霉酸对LpCBF基因的表达具有不同的诱导作用,其中冷处理对LpCBF基因的表达具有显著的诱导作用。此外,关联网络分析表明,包括某些胁迫相关蛋白在内的不同蛋白可能与 LpCBFs 发生相互作用。总之,这些发现将加深我们对 LpCBFs 蛋白结构及其在调控 L. perenne 应激反应中功能的理解。我们的研究结果将为进一步研究 LpCBF 蛋白在珍珠棉抗逆中的功能提供有价值的信息。
{"title":"Genome-wide identification and expression analysis of the CBF transcription factor family in <i>Lolium perenne</i> under abiotic stress.","authors":"Dan Wang, Binyu Cui, Hanyu Guo, Yaxi Liu, Shuming Nie","doi":"10.1080/15592324.2022.2086733","DOIUrl":"10.1080/15592324.2022.2086733","url":null,"abstract":"<p><p>C-repeat binding factor (CBF) subfamily genes encoding transcriptional activators are members of the AP2/ERF superfamily. CBFs play important roles in plant tolerance to abiotic stress. In this study, we identified and analyzed the structure, phylogeny, conserved motifs, and expression profiles of 12 CBFs of the grass species <i>Lolium perenne</i> cultured under abiotic stress. The identified LpCBFs were grouped into three phylogenetic clades according to their protein structures and motif organizations. <i>LpCBF</i> expression was differentially induced by cold, heat, water deficit, salinity, and abscisic acid, among which cold treatment induced <i>LpCBF</i> gene expression significantly. Furthermore, association network analysis indicated that different proteins, including certain stress-related proteins, potentially interact with LpCBFs. Altogether, these findings will enhance our understanding of LpCBFs protein structure and function in the regulation of <i>L. perenne</i> stress responses. Our results will provide valuable information for further functional research of LpCBF proteins in <i>L. perenne</i> stress resistance.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730156/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"89688205","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 5
Genetic regulation of lateral root development. 侧根发育的基因调控
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2022-06-01 DOI: 10.1080/15592324.2022.2081397
Ying Zhang, Yuru Ma, Dan Zhao, Ziyan Tang, Tengteng Zhang, Ke Zhang, Jingao Dong, Hao Zhang

Lateral roots (LRs) are an important part of plant root systems. In dicots, for example, after plants adapted from aquatic to terrestrial environments, filamentous pseudorhizae evolved to allow nutrient absorption. A typical plant root system comprises a primary root, LRs, root hairs, and a root cap. Classical plant roots exhibit geotropism (the tendency to grow downward into the ground) and can synthesize plant hormones and other essential substances. Root vascular bundles and complex spatial structures enable plants to absorb water and nutrients to meet their nutrient quotas and grow. The primary root carries out most functions during early growth stages but is later overtaken by LRs, underscoring the importance of LR development water and mineral uptake and the soil fixation capacity of the root. LR development is modulated by endogenous plant hormones and external environmental factors, and its underlying mechanisms have been dissected in great detail in Arabidopsis, thanks to its simple root anatomy and the ease of obtaining mutants. This review comprehensively and systematically summarizes past research (largely in Arabidopsis) on LR basic structure, development stages, and molecular mechanisms regulated by different factors, as well as future prospects in LR research, to provide broad background knowledge for root researchers.

侧根(LR)是植物根系的重要组成部分。例如,在双子叶植物中,当植物从水生环境适应到陆生环境后,就进化出了丝状假根,以便吸收养分。典型的植物根系由主根、根瘤、根毛和根帽组成。典型的植物根系具有向地性(向下长入地下的趋势),并能合成植物激素和其他必需物质。根的维管束和复杂的空间结构使植物能够吸收水分和养分,以满足其养分配额和生长需要。主根在早期生长阶段承担了大部分功能,但后来被根瘤取代,这突出了根瘤发育对水分和矿物质吸收以及根的土壤固定能力的重要性。LR 的发育受内源植物激素和外部环境因素的调节,由于拟南芥的根部解剖结构简单,而且容易获得突变体,因此对其潜在机制进行了详细的剖析。这篇综述全面系统地总结了过去(主要在拟南芥中)有关 LR 基本结构、发育阶段和受不同因子调控的分子机制的研究,以及 LR 研究的未来前景,为根系研究人员提供了广泛的背景知识。
{"title":"Genetic regulation of lateral root development.","authors":"Ying Zhang, Yuru Ma, Dan Zhao, Ziyan Tang, Tengteng Zhang, Ke Zhang, Jingao Dong, Hao Zhang","doi":"10.1080/15592324.2022.2081397","DOIUrl":"10.1080/15592324.2022.2081397","url":null,"abstract":"<p><p>Lateral roots (LRs) are an important part of plant root systems. In dicots, for example, after plants adapted from aquatic to terrestrial environments, filamentous pseudorhizae evolved to allow nutrient absorption. A typical plant root system comprises a primary root, LRs, root hairs, and a root cap. Classical plant roots exhibit geotropism (the tendency to grow downward into the ground) and can synthesize plant hormones and other essential substances. Root vascular bundles and complex spatial structures enable plants to absorb water and nutrients to meet their nutrient quotas and grow. The primary root carries out most functions during early growth stages but is later overtaken by LRs, underscoring the importance of LR development water and mineral uptake and the soil fixation capacity of the root. LR development is modulated by endogenous plant hormones and external environmental factors, and its underlying mechanisms have been dissected in great detail in Arabidopsis, thanks to its simple root anatomy and the ease of obtaining mutants. This review comprehensively and systematically summarizes past research (largely in Arabidopsis) on LR basic structure, development stages, and molecular mechanisms regulated by different factors, as well as future prospects in LR research, to provide broad background knowledge for root researchers.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10761116/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"76594506","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 4
The same boat, different storm: stress volatile emissions in response to biotrophic fungal infections in primary and alternate hosts. 同一条船,不同的风暴:主要宿主和替代宿主对生物营养真菌感染的应激挥发物排放。
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2023-05-26 DOI: 10.1080/15592324.2023.2217030
Hassan Yusuf Sulaiman, Eve Runno-Paurson, Ülo Niinemets

Rust infection results in stress volatile emissions, but due to the complexity of host-pathogen interaction and variations in innate defense and capacity to induce defense, biochemical responses can vary among host species. Fungal-dependent modifications in volatile emissions have been well documented in numerous host species, but how emission responses vary among host species is poorly understood. Our recent experiments demonstrated that the obligate biotrophic crown rust fungus (P. coronata) differently activated primary and secondary metabolic pathways in its primary host Avena sativa and alternate host Rhamnus frangula. In A. sativa, emissions of methyl jasmonate, short-chained lipoxygenase products, long-chained saturated fatty acid derivatives, mono- and sesquiterpenes, carotenoid breakdown products, and benzenoids were initially elicited in an infection severity-dependent manner, but the emissions decreased under severe infection and photosynthesis was almost completely inhibited. In R. frangula, infection resulted in low-level induction of stress volatile emissions, but surprisingly, in enhanced constitutive isoprene emissions, and even severely-infected leaves maintained a certain photosynthesis rate. Thus, the same pathogen elicited a much stronger response in the primary than in the alternate host. We argue that future work should focus on resolving mechanisms of different fungal tolerance and resilience among primary and secondary hosts.

锈病感染会导致胁迫性挥发性排放,但由于宿主与病原体相互作用的复杂性以及先天防御和诱导防御能力的差异,不同宿主物种的生化反应也会不同。在许多寄主物种中,挥发物排放的真菌依赖性改变已被充分记录,但对不同寄主物种的排放反应如何变化却知之甚少。我们最近的实验证明,必生生物营养型冠锈菌(P. coronata)在其主要宿主莜麦(Avena sativa)和候补宿主鼠李(Rhamnus frangula)中激活初级和次级代谢途径的方式不同。在 A. sativa 中,茉莉酸甲酯、短链脂氧酶产物、长链饱和脂肪酸衍生物、单萜和倍半萜、类胡萝卜素分解产物和苯并类化合物的排放最初是以感染严重程度依赖性的方式激发的,但在严重感染情况下排放减少,光合作用几乎完全被抑制。在 R. frangula 中,感染导致低水平的应激挥发性排放诱导,但令人惊讶的是,构成型异戊二烯排放增强,甚至严重感染的叶片也能保持一定的光合作用速率。因此,同一种病原体在主寄主中引起的反应要比在备用寄主中强烈得多。我们认为,未来的工作重点应该是解决主要宿主和次要宿主对真菌的不同耐受性和恢复力的机制问题。
{"title":"The same boat, different storm: stress volatile emissions in response to biotrophic fungal infections in primary and alternate hosts.","authors":"Hassan Yusuf Sulaiman, Eve Runno-Paurson, Ülo Niinemets","doi":"10.1080/15592324.2023.2217030","DOIUrl":"10.1080/15592324.2023.2217030","url":null,"abstract":"<p><p>Rust infection results in stress volatile emissions, but due to the complexity of host-pathogen interaction and variations in innate defense and capacity to induce defense, biochemical responses can vary among host species. Fungal-dependent modifications in volatile emissions have been well documented in numerous host species, but how emission responses vary among host species is poorly understood. Our recent experiments demonstrated that the obligate biotrophic crown rust fungus (P. coronata) differently activated primary and secondary metabolic pathways in its primary host Avena sativa and alternate host Rhamnus frangula. In A. sativa, emissions of methyl jasmonate, short-chained lipoxygenase products, long-chained saturated fatty acid derivatives, mono- and sesquiterpenes, carotenoid breakdown products, and benzenoids were initially elicited in an infection severity-dependent manner, but the emissions decreased under severe infection and photosynthesis was almost completely inhibited. In R. frangula, infection resulted in low-level induction of stress volatile emissions, but surprisingly, in enhanced constitutive isoprene emissions, and even severely-infected leaves maintained a certain photosynthesis rate. Thus, the same pathogen elicited a much stronger response in the primary than in the alternate host. We argue that future work should focus on resolving mechanisms of different fungal tolerance and resilience among primary and secondary hosts.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730184/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"9876698","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
Characteristics analysis of Early Responsive to Dehydration genes in Arabidopsis thaliana (AtERD). 拟南芥早期脱水反应基因(AtERD)的特性分析。
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2022-08-02 DOI: 10.1080/15592324.2022.2105021
Guofan Wu, Nongfu Tian, Fawen She, Aohua Cao, Wangze Wu, Sheng Zheng, Ning Yang

Early Responsive to Dehydration (ERD) genes are rapidly induced in response to various biotic and abiotic stresses, such as bacteria, drought, light, temperature and high salt in Arabidopsis thaliana. Sixteen ERD of Arabidopsis thaliana (AtERD) genes have been previously identified. The lengths of the coding region of the genes are 504-2838 bp. They encode 137-745 amino acids. In this study, the AtERD genes structure and promoter are analyzed through bioinformatics, and a overall function is summarized and a systematic signal pathway involving AtERD genes is mapped. AtERD9, AtERD11 and AtERD13 have the GST domain. AtERD10 and AtERD14 have the Dehyd domain. The promoters regions contain 32 light responsive elements, 23 ABA responsive elements, 5 drought responsive elements, 5 meristem expression related elements and 132 core promoter elements. The study provides a theoretical guidance for subsequent studies of AtERD genes.

拟南芥的早期脱水反应(ERD)基因在细菌、干旱、光照、温度和高盐等各种生物和非生物胁迫下被快速诱导。此前已发现 16 个拟南芥 ERD(AtERD)基因。这些基因的编码区长度为 504-2838 bp。它们编码 137-745 个氨基酸。本研究通过生物信息学分析了 AtERD 基因的结构和启动子,总结了 AtERD 基因的整体功能,并绘制了涉及 AtERD 基因的系统信号通路图。AtERD9、AtERD11和AtERD13具有GST结构域。AtERD10 和 AtERD14 具有 Dehyd 结构域。启动子区域包含 32 个光反应元件、23 个 ABA 反应元件、5 个干旱反应元件、5 个分生组织表达相关元件和 132 个核心启动子元件。该研究为AtERD基因的后续研究提供了理论指导。
{"title":"Characteristics analysis of <i>Early Responsive to Dehydration</i> genes in Arabidopsis thaliana (<i>AtERD</i>).","authors":"Guofan Wu, Nongfu Tian, Fawen She, Aohua Cao, Wangze Wu, Sheng Zheng, Ning Yang","doi":"10.1080/15592324.2022.2105021","DOIUrl":"10.1080/15592324.2022.2105021","url":null,"abstract":"<p><p>Early Responsive to Dehydration (ERD) genes are rapidly induced in response to various biotic and abiotic stresses, such as bacteria, drought, light, temperature and high salt in <i>Arabidopsis thaliana</i>. Sixteen ERD of <i>Arabidopsis thaliana</i> (<i>AtERD</i>) genes have been previously identified. The lengths of the coding region of the genes are 504-2838 bp. They encode 137-745 amino acids. In this study, the <i>AtERD</i> genes structure and promoter are analyzed through bioinformatics, and a overall function is summarized and a systematic signal pathway involving <i>AtERD</i> genes is mapped. AtERD9, AtERD11 and AtERD13 have the GST domain. AtERD10 and AtERD14 have the Dehyd domain. The promoters regions contain 32 light responsive elements, 23 ABA responsive elements, 5 drought responsive elements, 5 meristem expression related elements and 132 core promoter elements. The study provides a theoretical guidance for subsequent studies of <i>AtERD</i> genes.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730211/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"40675274","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 2
Sulfur nutrition and its role in plant growth and development. 硫营养及其在植物生长和发育中的作用。
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2022-02-07 DOI: 10.1080/15592324.2022.2030082
Om Prakash Narayan, Paras Kumar, Bindu Yadav, Meenakshi Dua, Atul Kumar Johri

Sulfur is one of the essential nutrients that is required for the adequate growth and development of plants. Sulfur is a structural component of protein disulfide bonds, amino acids, vitamins, and cofactors. Most of the sulfur in soil is present in organic matter and hence not accessible to the plants. Anionic form of sulfur (SO42-) is the primary source of sulfur for plants that are generally present in minimal amounts in the soil. It is water-soluble, so readily leaches out of the soil. Sulfur and sulfur-containing compounds act as signaling molecules in stress management as well as normal metabolic processes. They also take part in crosstalk of complex signaling network as a mediator molecule. Plants uptake sulfate directly from the soil by using their dedicated sulfate transporters. In addition, plants also use the sulfur transporter of a symbiotically associated organism like bacteria and fungi to uptake sulfur from the soil especially under sulfur depleted conditions. So, sulfur is a very important component of plant metabolism and its analysis with different dimensions is highly required to improve the overall well-being of plants, and dependent animals as well as human beings. The deficiency of sulfur leads to stunted growth of plants and ultimately loss of yield. In this review, we have focused on sulfur nutrition, uptake, transport, and inter-organismic transfer to host plants. Given the strong potential for agricultural use of sulfur sources and their applications, we cover what is known about sulfur impact on the plant health. We identify opportunities to expand our understanding of how the application of soil microbes like AMF or other root endophytic fungi affects plant sulfur uptake and in turn plant growth and development.

硫是植物充分生长和发育所必需的营养元素之一。硫是蛋白质二硫键、氨基酸、维生素和辅助因子的结构成分。土壤中的大部分硫存在于有机物中,因此植物无法获取。阴离子形式的硫(SO42-)是植物的主要硫源,一般在土壤中含量极少。它可溶于水,因此很容易从土壤中渗出。硫和含硫化合物是压力管理和正常代谢过程中的信号分子。它们还作为中介分子参与复杂信号网络的串联。植物利用其专用的硫酸盐转运体直接从土壤中吸收硫酸盐。此外,植物还利用细菌和真菌等共生生物的硫转运体从土壤中吸收硫,尤其是在缺硫的条件下。因此,硫是植物新陈代谢中非常重要的组成部分,要改善植物、依附动物和人类的整体福祉,就必须从不同角度对其进行分析。缺硫会导致植物生长迟缓,最终导致减产。在本综述中,我们将重点关注硫的营养、吸收、运输以及向寄主植物的机体间转移。鉴于硫源及其应用在农业上的巨大潜力,我们介绍了硫对植物健康的影响。我们将寻找机会,进一步了解土壤微生物(如 AMF 或其他根内生真菌)的应用如何影响植物对硫的吸收,进而影响植物的生长和发育。
{"title":"Sulfur nutrition and its role in plant growth and development.","authors":"Om Prakash Narayan, Paras Kumar, Bindu Yadav, Meenakshi Dua, Atul Kumar Johri","doi":"10.1080/15592324.2022.2030082","DOIUrl":"10.1080/15592324.2022.2030082","url":null,"abstract":"<p><p>Sulfur is one of the essential nutrients that is required for the adequate growth and development of plants. Sulfur is a structural component of protein disulfide bonds, amino acids, vitamins, and cofactors. Most of the sulfur in soil is present in organic matter and hence not accessible to the plants. Anionic form of sulfur (SO<sub>4</sub><sup>2-</sup>) is the primary source of sulfur for plants that are generally present in minimal amounts in the soil. It is water-soluble, so readily leaches out of the soil. Sulfur and sulfur-containing compounds act as signaling molecules in stress management as well as normal metabolic processes. They also take part in crosstalk of complex signaling network as a mediator molecule. Plants uptake sulfate directly from the soil by using their dedicated sulfate transporters. In addition, plants also use the sulfur transporter of a symbiotically associated organism like bacteria and fungi to uptake sulfur from the soil especially under sulfur depleted conditions. So, sulfur is a very important component of plant metabolism and its analysis with different dimensions is highly required to improve the overall well-being of plants, and dependent animals as well as human beings. The deficiency of sulfur leads to stunted growth of plants and ultimately loss of yield. In this review, we have focused on sulfur nutrition, uptake, transport, and inter-organismic transfer to host plants. Given the strong potential for agricultural use of sulfur sources and their applications, we cover what is known about sulfur impact on the plant health. We identify opportunities to expand our understanding of how the application of soil microbes like AMF or other root endophytic fungi affects plant sulfur uptake and in turn plant growth and development.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730164/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"39896182","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 42
Structure-activity relationship of volatile compounds that induce defense-related genes in maize seedlings. 诱导玉米幼苗防御相关基因的挥发性化合物的结构-活性关系
IF 2.9 4区 生物学 Q1 Agricultural and Biological Sciences Pub Date : 2023-12-31 Epub Date: 2023-07-16 DOI: 10.1080/15592324.2023.2234115
Yasuhiro Tanaka, Kenya Fujita, Minori Date, Bunta Watanabe, Kenji Matsui

Volatile organic compounds mediate plant-to-plant communication, and plants receiving volatile cues can acquire greater defenses against attackers. It has been expected that volatiles are received by factors that eventually lead to the induction of defense-related gene expression; however, the nature of these factors remain unclear. Structure-activity relationship analysis of gene expression induction by volatiles should provide insights into the nature of these factors. We conducted a structure-activity relationship study using maize seedlings and (Z)-3-hexen-1-yl acetate (Z3HAC) as the lead compound. The acid portion of Z3HAC was not essential, and (Z)-3-hexen-1-ol (Z3HOL), which is formed after the hydrolysis of Z3HAC, is likely the structure essential for the upregulation of the genes. The double bond of Z3HOL is essential; however, its geometry is indistinguishable. Strict specificity was detected regarding the length of the methylene chain on the α- and ω-sides of the double bond, and therefore, the 3-hexen-1-ol structure was found to be the ultimate structure. This finding provides insight into the nature of the factors that interact with a volatile compound and subsequently activate signaling pathways, leading to the upregulation of a subset of defense genes.

挥发性有机化合物是植物与植物之间交流的媒介,接收到挥发性线索的植物可以增强对攻击者的防御能力。人们预计,挥发性物质会被一些因子接收,最终导致诱导与防御相关的基因表达;然而,这些因子的性质仍不清楚。通过对挥发性物质诱导基因表达的结构-活性关系分析,可以深入了解这些因素的性质。我们以玉米幼苗和 (Z)-3-hexen-1-yl acetate(Z3HAC)为先导化合物进行了结构-活性关系研究。Z3HAC的酸性部分不是必需的,Z3HAC水解后形成的(Z)-3-己烯-1-醇(Z3HOL)可能是基因上调所必需的结构。Z3HOL 的双键是必不可少的,但其几何结构却无法区分。双键的 α 和 ω 侧亚甲基链的长度具有严格的特异性,因此,3-己烯-1-醇结构被认为是最终结构。这一发现使人们深入了解了与挥发性化合物相互作用并随后激活信号通路的因子的性质,从而导致防御基因子集的上调。
{"title":"Structure-activity relationship of volatile compounds that induce defense-related genes in maize seedlings.","authors":"Yasuhiro Tanaka, Kenya Fujita, Minori Date, Bunta Watanabe, Kenji Matsui","doi":"10.1080/15592324.2023.2234115","DOIUrl":"10.1080/15592324.2023.2234115","url":null,"abstract":"<p><p>Volatile organic compounds mediate plant-to-plant communication, and plants receiving volatile cues can acquire greater defenses against attackers. It has been expected that volatiles are received by factors that eventually lead to the induction of defense-related gene expression; however, the nature of these factors remain unclear. Structure-activity relationship analysis of gene expression induction by volatiles should provide insights into the nature of these factors. We conducted a structure-activity relationship study using maize seedlings and (<i>Z</i>)-3-hexen-1-yl acetate (Z3HAC) as the lead compound. The acid portion of Z3HAC was not essential, and (<i>Z</i>)-3-hexen-1-ol (Z3HOL), which is formed after the hydrolysis of Z3HAC, is likely the structure essential for the upregulation of the genes. The double bond of Z3HOL is essential; however, its geometry is indistinguishable. Strict specificity was detected regarding the length of the methylene chain on the α- and ω-sides of the double bond, and therefore, the 3-hexen-1-ol structure was found to be the ultimate structure. This finding provides insight into the nature of the factors that interact with a volatile compound and subsequently activate signaling pathways, leading to the upregulation of a subset of defense genes.</p>","PeriodicalId":20232,"journal":{"name":"Plant Signaling & Behavior","volume":null,"pages":null},"PeriodicalIF":2.9,"publicationDate":"2023-12-31","publicationTypes":"Journal Article","fieldsOfStudy":null,"isOpenAccess":false,"openAccessPdf":"https://www.ncbi.nlm.nih.gov/pmc/articles/PMC10730182/pdf/","citationCount":null,"resultStr":null,"platform":"Semanticscholar","paperid":"10157029","PeriodicalName":null,"FirstCategoryId":null,"ListUrlMain":null,"RegionNum":4,"RegionCategory":"生物学","ArticlePicture":[],"TitleCN":null,"AbstractTextCN":null,"PMCID":"OA","EPubDate":null,"PubModel":null,"JCR":null,"JCRName":null,"Score":null,"Total":0}
引用次数: 0
期刊
Plant Signaling & Behavior
全部 Acc. Chem. Res. ACS Applied Bio Materials ACS Appl. Electron. Mater. ACS Appl. Energy Mater. ACS Appl. Mater. Interfaces ACS Appl. Nano Mater. ACS Appl. Polym. Mater. ACS BIOMATER-SCI ENG ACS Catal. ACS Cent. Sci. ACS Chem. Biol. ACS Chemical Health & Safety ACS Chem. Neurosci. ACS Comb. Sci. ACS Earth Space Chem. ACS Energy Lett. ACS Infect. Dis. ACS Macro Lett. ACS Mater. Lett. ACS Med. Chem. Lett. ACS Nano ACS Omega ACS Photonics ACS Sens. ACS Sustainable Chem. Eng. ACS Synth. Biol. Anal. Chem. BIOCHEMISTRY-US Bioconjugate Chem. BIOMACROMOLECULES Chem. Res. Toxicol. Chem. Rev. Chem. Mater. CRYST GROWTH DES ENERG FUEL Environ. Sci. Technol. Environ. Sci. Technol. Lett. Eur. J. Inorg. Chem. IND ENG CHEM RES Inorg. Chem. J. Agric. Food. Chem. J. Chem. Eng. Data J. Chem. Educ. J. Chem. Inf. Model. J. Chem. Theory Comput. J. Med. Chem. J. Nat. Prod. J PROTEOME RES J. Am. Chem. Soc. LANGMUIR MACROMOLECULES Mol. Pharmaceutics Nano Lett. Org. Lett. ORG PROCESS RES DEV ORGANOMETALLICS J. Org. Chem. J. Phys. Chem. J. Phys. Chem. A J. Phys. Chem. B J. Phys. Chem. C J. Phys. Chem. Lett. Analyst Anal. Methods Biomater. Sci. Catal. Sci. Technol. Chem. Commun. Chem. Soc. Rev. CHEM EDUC RES PRACT CRYSTENGCOMM Dalton Trans. Energy Environ. Sci. ENVIRON SCI-NANO ENVIRON SCI-PROC IMP ENVIRON SCI-WAT RES Faraday Discuss. Food Funct. Green Chem. Inorg. Chem. Front. Integr. Biol. J. Anal. At. Spectrom. J. Mater. Chem. A J. Mater. Chem. B J. Mater. Chem. C Lab Chip Mater. Chem. Front. Mater. Horiz. MEDCHEMCOMM Metallomics Mol. Biosyst. Mol. Syst. Des. Eng. Nanoscale Nanoscale Horiz. Nat. Prod. Rep. New J. Chem. Org. Biomol. Chem. Org. Chem. Front. PHOTOCH PHOTOBIO SCI PCCP Polym. Chem.
×
引用
GB/T 7714-2015
复制
MLA
复制
APA
复制
导出至
BibTeX EndNote RefMan NoteFirst NoteExpress
×
0
微信
客服QQ
Book学术公众号 扫码关注我们
反馈
×
意见反馈
请填写您的意见或建议
请填写您的手机或邮箱
×
提示
您的信息不完整,为了账户安全,请先补充。
现在去补充
×
提示
您因"违规操作"
具体请查看互助需知
我知道了
×
提示
现在去查看 取消
×
提示
确定
Book学术官方微信
Book学术文献互助
Book学术文献互助群
群 号:481959085
Book学术
文献互助 智能选刊 最新文献 互助须知 联系我们:info@booksci.cn
Book学术提供免费学术资源搜索服务,方便国内外学者检索中英文文献。致力于提供最便捷和优质的服务体验。
Copyright © 2023 Book学术 All rights reserved.
ghs 京公网安备 11010802042870号 京ICP备2023020795号-1