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Abstract 2610: A high performance blood test for multiple cancer early screening 摘要2610:一种用于多种癌症早期筛查的高性能血液检测方法
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.am2021-2610
Linhao Xu, Jun Wang, Weifeng Ma, Xin Liu, Ting Yang, Sihui Li, Qian Hu, Jinsheng Tao, Z. Ye, Zhiwei Chen, Jian-Bing Fan
Introduction: Early detection is critical to improving cancer patient survival and quality of life. Cell-free DNA (cfDNA) methylation profiling is a promising diagnostic approach for early detection of cancer, even before symptoms appear. We previously reported a non-invasive and cost-effective methylation test, Aurora, which is able to detect three major cancer types with high specificity and sensitivity especially at early stages (I/II), including lung cancer (LC), breast cancer (BC), colorectal cancer (CRC). We have improved this test to include two additional major cancer types, gastric cancer (GC) and esophageal cancer (EC). Taking together, these five cancer types represent 56% of new cancer cases and 60% of cancer-related deaths in China. Methods: We developed a novel high-throughput targeted methylation profiling platform, Aurora 2.0 (an improved version of Aurora 1.0, as presented in AACR 2020), to efficiently enrich and capture cancer-specific DNA methylation markers in plasma, prior to analysis via next-generation sequencing on a MiSeqDx system. About 100 cases each for GC and EC patients (mostly at Stage I/II), together with ~200 healthy controls, have been analyzed by using Aurora 2.0 and used for model development and validation. Results and Discussion: cfDNA methylation profiles have been obtained from 409 plasma samples, comprising 206 healthy controls, 98 GC and 105 EC patients. Logistic regression model has been developed with the Area Under Curve (AUC) of 94.0% and 93.5% for GC and EC, respectively. Overall, the performance (AUC) of Aurora 2.0 for LC/BC/CRC/GC/EC are 97.3%, 96.2%, 92%, 94% and 93.5%, respectively. An independent cohort (~2,000 plasma samples, five cancer types including lung, breast, colorectal, gastric and esophageal cancers with healthy controls) study is undergoing to further validate this test prospectively. The superior performance and cost-effectiveness (~$100) of the test could make early cancer screening of multiple major cancers in symptom-free and average-risk populations more achievable. Citation Format: Linhao Xu, Jun Wang, Weifeng Ma, Xin Liu, Ting Yang, Sihui Li, Qian Hu, Jinsheng Tao, Zhujia Ye, Zhiwei Chen, Jian-Bing Fan. A high performance blood test for multiple cancer early screening [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 2610.
早期发现对提高癌症患者的生存和生活质量至关重要。无细胞DNA (cfDNA)甲基化分析是一种很有前途的诊断方法,可以在症状出现之前早期发现癌症。我们之前报道了一种无创且具有成本效益的甲基化检测方法Aurora,它能够以高特异性和敏感性检测三种主要的癌症类型,特别是在早期(I/II),包括肺癌(LC),乳腺癌(BC),结直肠癌(CRC)。我们改进了这个测试,增加了两种主要的癌症类型,胃癌(GC)和食管癌(EC)。总的来说,这五种癌症占中国新发癌症病例的56%,占癌症相关死亡人数的60%。方法:我们开发了一种新的高通量靶向甲基化分析平台Aurora 2.0 (AACR 2020中提出的Aurora 1.0的改进版本),用于在MiSeqDx系统上通过下一代测序进行分析之前,有效地富集和捕获血浆中癌症特异性DNA甲基化标记物。使用Aurora 2.0分析了GC和EC患者各约100例(大部分处于I/II期),以及约200例健康对照,并用于模型开发和验证。结果和讨论:从409份血浆样本中获得cfDNA甲基化谱,其中包括206名健康对照,98名GC和105名EC患者。建立Logistic回归模型,GC和EC的曲线下面积(AUC)分别为94.0%和93.5%。总体而言,Aurora 2.0在LC/BC/CRC/GC/EC上的AUC分别为97.3%、96.2%、92%、94%和93.5%。目前正在进行一项独立队列研究(约2000份血浆样本,包括肺癌、乳腺癌、结直肠癌、胃癌和食管癌等5种癌症类型,与健康对照),以进一步验证该试验的前瞻性。该测试的卓越性能和成本效益(约100美元)可以使无症状和平均风险人群的多种主要癌症的早期癌症筛查更容易实现。引用格式:徐林浩,王军,马伟峰,刘鑫,杨婷,李思慧,胡倩,陶金生,叶竹佳,陈志伟,樊建兵。一种用于多种癌症早期筛查的高性能血液检测方法[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):2610。
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引用次数: 1
Abstract 2578: Calcium modulates apoptosis and differentiation in human normal colon 3D organoids irrespective of donor sex and biopsy site 摘要:钙可以调节人类正常结肠3D类器官的凋亡和分化,而不受供体性别和活检部位的影响
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2578
C. Dampier, M. Devall, J. Bryant, S. Eaton, J. Huyghe, Andre E Kim, Virginia Díez-Obrero, F. V. Duijnhoven, Duncan C. Thomas, S. Powell, W. Gauderman, U. Peters, G. Casey
Background: Observational studies indicate that calcium, a micronutrient involved in numerous cell-signaling cascades, may protect against colon cancer. Stratified analyses suggest the protective effect of calcium may depend on sex and anatomic subsite, but these hypotheses have been difficult to test experimentally. Here, we employ human-derived normal colon 3D organoids as a model of the healthy colon crypt to interrogate the effect of calcium exposure on gene expression and the effect of donor sex and biopsy anatomic subsite on the response to calcium. Methods: A total of 39 3D colon organoid lines derived from colon biopsies (22 proximal, 17 distal) obtained from unrelated subjects (21 female, 18 male) during screening colonoscopy were grown under low (1.7 mM) calcium conditions, and a matching set of the same lines were grown under high (5.0 mM) calcium conditions. After 72 hours, total RNA was extracted from organoid lines, libraries were prepared with poly-A selection, and bulk RNA-sequencing was used to measure gene expression. DNA was extracted from the same lines and genotyped using the OncoArray 500K beadchip. Missing genotypes were imputed to the TOPMed reference panel using the TOPMed Imputation Server. Polygenic risk scores for colorectal cancer were calculated for each organoid line using Plink and 135 of 141 genome-wide significant SNPs associated with colorectal cancer in recent genome-wide association studies. Relative expression between low and high calcium conditions was tested using generalized linear models as implemented in DESeq2. Functional enrichment of gene ontologies among differentially expressed genes was performed with ToppFun. The effects of donor sex, biopsy subsite, and organoid polygenic risk score on response to calcium were tested using single and multiple linear regression as implemented in the base R lm function. Results: Exposure to calcium induced differential expression of 767 genes with a false discovery rate of 5%. Differentially expressed genes were enriched for biological processes including extracellular structure organization (Bonferroni p=1.6E-3) and positive regulation of apoptosis (Bonferroni p=2.2E-2). Although stratified analyses demonstrated more differentially expressed genes in 3D colon organoids derived from male subjects, no statistically significant effect of sex, subsite, or polygenic risk score on response to calcium was observed. Conclusion: We tested the effect of calcium exposure on gene expression in human-derived normal colon 3D organoids and found that calcium modulated processes related to differentiation and apoptosis, but the response to calcium was not affected by sex, anatomic subsite, or polygenic risk score. Citation Format: Christopher H. Dampier, Matthew Devall, Jennifer Bryant, Stephen D. Eaton, Jeroen R. Huyghe, Andre E. Kim, Virginia Diez-Obrero, Franzel J. van Duijnhoven, Duncan C. Thomas, Steven M. Powell, W James Gauderman, Ulrike Peters, Graham Casey. Calcium modul
背景:观察性研究表明,钙,一种参与许多细胞信号级联反应的微量营养素,可能预防结肠癌。分层分析表明,钙的保护作用可能取决于性别和解剖亚位,但这些假设很难通过实验来验证。在这里,我们采用人类来源的正常结肠3D类器官作为健康结肠隐窝的模型,来探究钙暴露对基因表达的影响,以及供体性别和活检解剖亚位点对钙反应的影响。方法:在结肠镜筛查过程中,从无亲缘关系的受试者(21名女性,18名男性)获得结肠活检标本(22名近端,17名远端),在低钙(1.7 mM)条件下培养39个3D结肠类器官细胞系,在高钙(5.0 mM)条件下培养一组相同的细胞系。72h后,提取类器官细胞系的总RNA,采用poly-A选择建立文库,采用大体积RNA测序法测定基因表达。从相同的细胞系中提取DNA,使用OncoArray 500K头芯片进行基因分型。使用TOPMed Imputation Server将缺失的基因型输入到TOPMed参考面板。在最近的全基因组关联研究中,使用Plink和141个与结直肠癌相关的全基因组显著snp中的135个计算了每个类器官系的结直肠癌多基因风险评分。采用DESeq2中实现的广义线性模型检验低钙和高钙条件之间的相对表达。利用ToppFun对差异表达基因的基因本体进行功能富集。供体性别、活检亚部位和类器官多基因风险评分对钙反应的影响采用基础R - lm函数中实施的单线性和多元线性回归进行测试。结果:钙暴露诱导767个基因差异表达,错误发现率为5%。差异表达基因富集于细胞外结构组织(Bonferroni p=1.6E-3)和细胞凋亡的正向调控(Bonferroni p= 2.22 e -2)等生物过程。虽然分层分析显示,来自男性受试者的三维结肠类器官中有更多的差异表达基因,但没有观察到性别、亚位点或多基因风险评分对钙反应的统计学显著影响。结论:我们测试了钙暴露对人源性正常结肠3D类器官基因表达的影响,发现钙调节了与分化和凋亡相关的过程,但对钙的反应不受性别、解剖亚位点或多基因风险评分的影响。引用格式:Christopher H. Dampier, Matthew Devall, Jennifer Bryant, Stephen D. Eaton, Jeroen R. Huyghe, Andre E. Kim, Virginia Diez-Obrero, Franzel J. van Duijnhoven, Duncan C. Thomas, Steven M. Powell, W James Gauderman, Ulrike Peters, Graham Casey。钙调节人类正常结肠3D类器官的凋亡和分化,而不受供体性别和活检部位的影响[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):2578。
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引用次数: 0
Abstract 2521: Race specific differences in DNA damage repair dysregulation in breast cancer and association with outcome 摘要:乳腺癌DNA损伤修复失调的种族特异性差异及其与预后的关系
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2521
A. Mazumder, A. Jimenez, R. Ellsworth, S. Freedland, S. George, M. Bainbridge, S. Haricharan
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引用次数: 0
Abstract 2568: Use of kinase inhibitors in Fanconi anemia oral cancercell lines 2568:激酶抑制剂在范可尼贫血口腔癌细胞系中的应用
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2568
W. N. Jungbauer, Mustafa M. Ali, B. Wuertz, F. Ondrey
Successful Fanconi anemia (FA) treatment allows greater longevity for these patients. However, there is a greatly increased risk of squamous malignancies of the head and neck which are quite deadly in these young patients. There is an unmet need for non DNA damaging therapies for this malignancy which could augment surgery. Our approach has been to examine potential treatments based on known pathophysiology of the disease which would be acceptable for this population so we examined the effects of metformin and pioglitazone, as well as two cell cycle kinase inhibitors, in FA and leukoplakia cell lines. We examined dose-dependent and combination effects on cell proliferation, as judged by MTT assay. We examined metformin, pioglitazone, the polo-like kinase 1 inhibitor, GSK461364, and Wee1 kinase inhibitor, AZD1775.In single agent studies, we observed dose-dependent decreases in cell proliferation with all 4 single agents. We observed decreased cell proliferation in all cell lines at 72 hours at clinically achievable serum levels of 85% to 55% of control levels (P Citation Format: Walter N. Jungbauer, Mustafa M. Ali, Beverly R. Wuertz, Frank G. Ondrey. Use of kinase inhibitors in Fanconi anemia oral cancercell lines [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 2568.
成功的范可尼贫血(FA)治疗可以延长这些患者的寿命。然而,头颈部鳞状恶性肿瘤的风险大大增加,这在这些年轻患者中是相当致命的。对这种恶性肿瘤的非DNA损伤治疗的需求尚未得到满足,这可能会增加手术。我们的方法是根据已知的疾病病理生理学来检查潜在的治疗方法,这对这个人群来说是可以接受的,所以我们检查了二甲双胍和吡格列酮,以及两种细胞周期激酶抑制剂对FA和白斑细胞系的影响。通过MTT试验,我们检测了剂量依赖性和联合作用对细胞增殖的影响。我们检测了二甲双胍、吡格列酮、polo样激酶1抑制剂GSK461364和Wee1激酶抑制剂AZD1775。在单药研究中,我们观察到所有4种单药对细胞增殖的剂量依赖性降低。我们观察到,在临床可达到的血清水平为对照水平的85%至55%的情况下,所有细胞系在72小时内的细胞增殖均下降(P引用格式:Walter N. Jungbauer, Mustafa M. Ali, Beverly R. Wuertz, Frank G. Ondrey)。激酶抑制剂在范可尼贫血口腔癌细胞系中的应用[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):摘要第2568期。
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引用次数: 1
Abstract 2548: Preclinical development of EARLI-001, a genetic platform producing cancer-activated synthetic biomarkers for the early detection of malignancies 摘要2548:early -001的临床前开发,early -001是一个产生癌症激活的合成生物标志物的遗传平台,用于早期检测恶性肿瘤
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2548
Badriprasad Ananthanarayanan, Regina Nieu, Evan Bishop, Shireen S. Rudina, A. Harwig, Bijee George, D. Suhy
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引用次数: 1
Abstract 2531: Function-related indicator and outcomes of screening mammography in older women from the BCSC-Medicare Cohort 摘要2531:bscc - medicare队列中老年妇女乳房x光筛查的功能相关指标和结果
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2531
Dongyu Zhang, L. Abraham, J. Demb, D. Miglioretti, S. Advani, B. Sprague, L. Henderson, Tracy Onega, K. Wernli, L. Walter, K. Kerlikowske, J. Schousboe, E. O'Meara, D. Braithwaite
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引用次数: 0
Abstract 2603: What's more in serrated lesions: interobserver agreement and molecular features 摘要2603:在锯齿状病变中更重要的是:观察者之间的一致和分子特征
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2603
F. Ambrosi, C. Ricci, Federico Chiarucci, Stefano Chilotti, Doriana Donatella Di Nanni, A. G. Corradini, Maria Antonietta Cumiento, D. Biase, M. Fiorentino
Introduction: Serrated lesions are a heterogeneous group of lesions routinely evaluated with different morphologic subtypes, and colorectal carcinogenesis has been related to the understanding of the serrated pathway in these lesions. In this setting, BRAF V600E mutation has been demonstrated as a marker for the serrated carcinogenic evolution, while the mismatch repair protein (MMR) was recognized in a small subset of hyperplastic polyps. Design: This study aimed to evaluate the interobserver agreement among 6 pathologists in the morphological diagnosis of the serrated lesion according to WHO Classification; furthermore, the additional MMR (MLH1, PMS2, MSH2, MSH6) and BRAF V600E (VE1) mutation status were studied by immunohistochemistry and NGS analysis. Results: We evaluated 52 serrated lesions of the colon retrieved from our pathology archives in 2019. The cohort included 48 patients: 21 males and 27 females, with a mean age of 67 years (range 50-89), of which 77.1% were identified according to regional screening protocol. All hematoxylin and eosin slides were independently reviewed by each pathologist, who classified all samples according to the WHO Classification of Digestive System Tumor (Fleiss Kappa: 0.75). The immunohistochemical expression of MMR and BRAF was evaluated in 42 samples. Loss of MLH1 and PMS2 was recorded in one serrated sessile lesion (LSS) with dysplasia, but NGS analysis resulted negative. In contrast, BRAF V600E IHC resulted positive in 22 samples (52.4%), specifically in 5 hyperplastic polyps (71.4%), 10 LSS (66.6%), 5 LSS with dysplasia (45.5%) and 2 adenomatous polyps (100%), 1 TSA negative. All BRAF V600E IHC positive cases were confirmed by NGS analysis. Conclusion: To conclude, the interobserver agreement for morphological classification of serrated lesions resulted substantial; however, behind the morphological appearance, BRAF V600E resulted in predominant mutation in LSS and hyperplastic polyps, these observations confirmed the possibility to improve the classification with IHC BRAF V600E; especially for hyperplastic polyps, it may be crucial to identify precancerous lesions and different clinical management. Citation Format: Francesca Ambrosi, Costantino Ricci, Federico Chiarucci, Stefano Chilotti, Doriana Donatella Di Nanni, Angelo Gianluca Corradini, Maria Antonietta Cumiento, Dario De Biase, Michelangelo Fiorentino. What9s more in serrated lesions: interobserver agreement and molecular features [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2021; 2021 Apr 10-15 and May 17-21. Philadelphia (PA): AACR; Cancer Res 2021;81(13_Suppl):Abstract nr 2603.
导读:锯齿状病变是一组异质性病变,通常以不同的形态亚型进行评估,结直肠癌的发生与对这些病变中锯齿状通路的理解有关。在这种情况下,BRAF V600E突变已被证明是锯齿状致癌进化的标志,而错配修复蛋白(MMR)在一小部分增殖性息肉中被识别出来。设计:本研究旨在评估6名病理学家根据WHO分类对锯齿状病变进行形态学诊断时的观察者间一致性;此外,通过免疫组织化学和NGS分析研究了其他MMR (MLH1、PMS2、MSH2、MSH6)和BRAF V600E (VE1)突变状态。结果:我们评估了2019年从病理档案中检索到的52例结肠锯齿状病变。该队列包括48例患者:男性21例,女性27例,平均年龄67岁(50-89岁),其中77.1%根据区域筛查方案确定。所有苏木精和伊红切片由每位病理学家独立审查,他们根据who消化系统肿瘤分类(Fleiss Kappa: 0.75)对所有样本进行分类。在42个样本中评估MMR和BRAF的免疫组织化学表达。MLH1和PMS2的缺失记录在一例发育不良的锯齿状无柄病变(LSS)中,但NGS分析结果为阴性。相比之下,BRAF V600E IHC阳性22例(52.4%),其中增生性息肉5例(71.4%),LSS 10例(66.6%),LSS伴不典型增生5例(45.5%),腺瘤性息肉2例(100%),TSA阴性1例。所有BRAF V600E IHC阳性病例均经NGS分析确诊。结论:总之,观察者之间对锯齿状病变形态学分类的一致意见是实质性的;然而,在形态表象的背后,BRAF V600E导致了LSS和增生性息肉的显性突变,这些观察结果证实了用IHC BRAF V600E改进分类的可能性;特别是对于增生性息肉,鉴别癌前病变和不同的临床处理可能是至关重要的。引文格式:Francesca Ambrosi, Costantino Ricci, Federico Chiarucci, Stefano Chilotti, Doriana Donatella Di Nanni, Angelo Gianluca Corradini, Maria Antonietta Cumiento, Dario De Biase, Michelangelo Fiorentino。锯齿状病变更重要的是:观察者之间的一致和分子特征[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):2603。
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引用次数: 0
Abstract 2611: Transcription factor-nucleosome dynamics inferred from plasma cfDNA delineates tumor and tumor-microenvironment phenotype 摘要2611:从血浆cfDNA推断的转录因子-核小体动力学描述了肿瘤和肿瘤微环境表型
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2611
Satyanarayan Rao, A. Han, Alexis Zukowski, E. Kopin, P. Kabos, S. Ramachandran
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引用次数: 0
Abstract 2586: Association between healthy eating index score and risk of pancreatic cancer in the prostate, lung, colorectal, and ovarian cancer screening trial (PLCO) 2586:前列腺癌、肺癌、结直肠癌和卵巢癌筛查试验(PLCO)中健康饮食指数评分与胰腺癌风险的关系
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-2586
Margaret Hoyt, Jianjun Zhang
Pancreatic cancer is one of the deadliest malignancies in the US. Most cases are diagnosed in the late, non-resectable stages largely due to lack of effective screening tests. There is an urgent need to identify modifiable risk factors for primary prevention of this malignancy. To date, only a few risk factors (family history, smoking, and type-2 diabetes) have been identified for pancreatic cancer. Although several lines of evidence suggest that nutrition plays a role in pancreatic cancer, few nutrients have been consistently associated with its risk in epidemiologic studies. Therefore, the present study sought to investigate the association between the 2015 Healthy Eating Index (HEI-2015) score and pancreatic cancer risk among participants in the Prostate, Lung, Colorectal and Ovarian Cancer Screening Trial (PLCO). The HEI-2015 is a measure of overall diet quality used to assess how well a diet conforms to key recommendations of the 2015-2020 Dietary Guidelines for Americans. The HEI score is made up of 13 food components, with higher scores (ranged 0-100 points) indicating better dietary quality. In the present study, the HEI-2015 scores were calculated from participant responses to two food frequency questionnaires, dietary questionnaire (DQX) and dietary history questionnaire (DHQ) administered at baseline and the three-year anniversary of enrollment, respectively. During a median follow-up of 12.2 years, 279 cases of pancreatic cancer were identified among 58,477 participants who completed the DQX, while 101,721 participants who responded to the DHQ gave rise to 380 cases of pancreatic cancer over a median follow-up of 8.9 years. Hazard ratios (HR) and 95% confidence internals (CI) were estimated using Cox proportional hazards regression for total HEI score and individual score components, classified into adequacy components (total fruit, whole fruits, total vegetables, greens and beans, whole grains, dairy, total protein foods, seafood and plant proteins, and fatty acids) and moderation components (refined grains, sodium, added sugars, and saturated fats). After adjustment for confounders, no significant association between total HEI score and pancreatic cancer was identified [HR (95% CI) for quartile (Q) 4 vs. Q1: 0.86 (0.60, 1.09) for DQX and 1.03 (0.77, 1.39) for DHQ]. The individual component scores for total vegetables and added sugar in the DHQ analysis and whole grain score in the DQX analysis were inversely associated with pancreatic cancer risk [HR (95% CI) for one-point score increase: 0.89 (0.81, 0.98), 0.95 (0.91, 0.99), and 0.94 (0.89, 0.99), respectively]. In summary, our study did not find a significant association between overall diet quality and pancreatic cancer risk but revealed significant associations with total vegetables, added sugar, and whole grains in the PLCO trial. Citation Format: Margaret L. Hoyt, Jianjun Zhang. Association between healthy eating index score and risk of pancreatic cancer in the prostate, lung,
胰腺癌是美国最致命的恶性肿瘤之一。由于缺乏有效的筛查试验,大多数病例在晚期不可切除的阶段被诊断出来。迫切需要确定可改变的危险因素,以初级预防这种恶性肿瘤。迄今为止,只有少数危险因素(家族史、吸烟和2型糖尿病)被确定为胰腺癌。虽然一些证据表明营养在胰腺癌中起作用,但在流行病学研究中,很少有营养与胰腺癌的风险一致相关。因此,本研究旨在探讨2015年健康饮食指数(HEI-2015)评分与前列腺癌、肺癌、结直肠癌和卵巢癌筛查试验(PLCO)参与者胰腺癌风险之间的关系。HEI-2015是一项衡量整体饮食质量的指标,用于评估饮食是否符合《2015-2020年美国人膳食指南》的主要建议。HEI分数由13个食品成分组成,分数越高(0-100分)表明饮食质量越好。在本研究中,HEI-2015得分是根据参与者分别在基线和入组三周年时对两份食物频率问卷、饮食问卷(DQX)和饮食史问卷(DHQ)的回答计算得出的。在12.2年的中位随访期间,58,477名完成DQX治疗的参与者中发现279例胰腺癌,而101,721名接受DHQ治疗的参与者在8.9年的中位随访期间发现了380例胰腺癌。使用Cox比例风险回归对总HEI评分和个体评分成分进行风险比(HR)和95%置信区间(CI)估计,并将其分为充足成分(总水果、全水果、总蔬菜、绿色蔬菜和豆类、全谷物、乳制品、总蛋白食品、海鲜和植物蛋白以及脂肪酸)和适度成分(精制谷物、钠、添加糖和饱和脂肪)。校正混杂因素后,未发现HEI总分与胰腺癌之间存在显著关联[四分位数(Q) 4的HR (95% CI)比Q1: DQX为0.86 (0.60,1.09),DHQ为1.03(0.77,1.39)]。DHQ分析中总蔬菜和添加糖的个体成分得分和DQX分析中的全谷物得分与胰腺癌风险呈负相关[分数增加1分的HR (95% CI)分别为0.89(0.81,0.98)、0.95(0.91,0.99)和0.94(0.89,0.99)]。总之,我们的研究没有发现总体饮食质量与胰腺癌风险之间的显著关联,但在PLCO试验中揭示了总蔬菜、添加糖和全谷物之间的显著关联。引用格式:Margaret L. Hoyt,张建军。前列腺癌、肺癌、结直肠癌和卵巢癌筛查试验(PLCO)中健康饮食指数评分与胰腺癌风险的关系[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):摘要第2586期。
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引用次数: 0
Abstract LB013: Clinical validation of a targeted methylation-based multi-cancer early detection test LB013:靶向甲基化多癌早期检测试验的临床验证
Pub Date : 2021-07-01 DOI: 10.1158/1538-7445.AM2021-LB013
E. Klein, D. Richards, A. Cohn, M. Tummala, R. Lapham, D. Cosgrove, G. Chung, J. Clement, Jingjing Gao, N. Hunkapiller, A. Jamshidi, K. Kurtzman, M. Seiden, C. Swanton, Minetta C. Liu
Introduction: A multi-cancer early detection (MCED) test as a complement to existing screening tests could increase the number of cancer cases detected in a population, potentially improving patient outcomes and survival as well as decreasing harmful and aggressive treatments. The Circulating Cell-free Genome Atlas study (CCGA; NCT02889978) was designed to develop and validate a blood-based MCED test analyzing plasma cell-free DNA (cfDNA) to detect cancer signals across multiple cancer types and simultaneously predict their signal origin. Here, the results of the third and final pre-specified CCGA validation sub-study for a refined MCED test in a large cohort in preparation for clinical use are reported. Methods: CCGA is a prospective, multicenter, case-control, observational study with longitudinal follow-up (overall population N=15,254). In this sub-study (n=5309), key primary objectives were to evaluate test performance for cancer signal detection (specificity, overall sensitivity, sensitivity by clinical stage) and signal origin prediction (accuracy). cfDNA from evaluable samples was analyzed using a targeted methylation bisulfite sequencing assay and a machine learning algorithm. The classifier was trained to target a specificity of 99.4% and locked before analysis of the independent validation set. Overall, 4077 participants comprised the independent validation set with confirmed status (cancer: n=2823; non-cancer: n=1254 with non-cancer status confirmed at year-one follow-up). MCED test results are reported for this confirmed status set. Results: Mean (SD) age in the cancer and non-cancer groups was 62.6 (11.76) and 56.2 (12.63) years, respectively. Specificity for cancer signal detection was 99.5% (1248/1254; 95% confidence interval: 99.0-99.8%). Overall sensitivity for cancer signal detection was 51.5% (1453/2823; 49.6-53.3%); sensitivity increased with stage (Stage I: 16.8% [14.5-19.5%], Stage II: 40.4% [36.8-44.1%], Stage III: 77.0% [73.4-80.3%], Stage IV: 90.1% [87.5-92.2%]). Stage I-III sensitivity was 67.6% (593/877; 64.4-70.6%) in a pre-specified set of 12 high-signal cancers accounting for ~63% of annual US cancer deaths [1] and was 40.7% (863/2118; 38.7-42.9%) in all cancers. Cancer signals were detected across >50 cancer types [2]. Overall accuracy of signal origin prediction in true positives was 88.7% (87.0-90.2%). Conclusions: In this pre-specified, large-scale, clinical validation sub-study of CCGA, the MCED test detected cancer signals across >50 cancer types, which is critical to maximize the number of cancer cases detected in a population. This MCED test performed with high specificity and high accuracy of signal origin prediction. These data lay the foundation for population-scale clinical implementation of this test. 1.US Mortality Data 1969-2016 (www.seer.cancer.gov); based on 2015-2016. 2.Amin et al. CA Cancer J Clin. 2017;67:93e99. Citation Format: Eric A. Klein, Donald Richards, Allen Cohn, Mohan Tummala, Rosanna La
多种癌症早期检测(MCED)测试作为现有筛查测试的补充,可以增加人群中检测到的癌症病例数量,潜在地改善患者的预后和生存率,并减少有害和积极的治疗。循环无细胞基因组图谱研究(CCGA);NCT02889978)旨在开发和验证基于血液的MCED测试,分析血浆游离DNA (cfDNA),以检测多种癌症类型的癌症信号并同时预测其信号来源。本文报告了第三个也是最后一个预先指定的CCGA验证子研究的结果,该子研究是在一个大型队列中为临床应用做准备的一项改进的MCED试验。方法:CCGA是一项前瞻性、多中心、病例对照、观察性的纵向随访研究(总人群N=15,254)。在这个子研究中(n=5309),主要目的是评估癌症信号检测的测试性能(特异性、总体敏感性、临床分期敏感性)和信号起源预测(准确性)。使用靶向甲基化亚硫酸酯测序法和机器学习算法分析可评估样品中的cfDNA。经过训练,分类器的特异性为99.4%,并在独立验证集分析之前锁定。总体而言,4077名参与者组成了确认状态的独立验证集(癌症:n=2823;非癌症:n=1254,在一年随访中确认非癌症状态)。MCED测试结果将报告此确认状态集。结果:肿瘤组和非肿瘤组的平均(SD)年龄分别为62.6(11.76)岁和56.2(12.63)岁。肿瘤信号检测特异性为99.5% (1248/1254;95%置信区间:99.0-99.8%)。肿瘤信号检测的总灵敏度为51.5% (1453/2823;49.6 - -53.3%);敏感性随分期升高(ⅰ期:16.8%[14.5-19.5%],ⅱ期:40.4%[36.8-44.1%],ⅲ期:77.0%[73.4-80.3%],ⅳ期:90.1%[87.5-92.2%])。I-III期敏感性为67.6% (593/877;64.4-70.6%),在一组预先指定的12种高信号癌症中占美国每年癌症死亡人数的约63%[1],为40.7% (863/2118;38.7-42.9%)。在超过50种癌症类型中检测到癌症信号[2]。真阳性患者信号源预测的总体准确率为88.7%(87.0-90.2%)。结论:在这个预先指定的、大规模的、临床验证的CCGA子研究中,MCED检测检测了超过50种癌症类型的癌症信号,这对于最大限度地提高人群中癌症病例的检测数量至关重要。该MCED测试具有高特异性和高准确度的信号起源预测。这些数据为该测试在人群规模的临床实施奠定了基础。1.1969-2016年美国死亡率数据(www.seer.cancer.gov);基于2015-2016年。2.阿明等人。中华肿瘤杂志,2017;37(3):391 - 391。引文格式:Eric A. Klein, Donald Richards, Allen Cohn, Mohan Tummala, Rosanna Lapham, David Cosgrove, Gina Chung, Jessica Clement, jing Gao, Nathan Hunkapiller, Arash Jamshidi, Kathryn Kurtzman, Michael V. Seiden, Charles Swanton, Minetta C. Liu靶向甲基化多癌早期检测试验的临床验证[摘要]。见:美国癌症研究协会2021年年会论文集;2021年4月10日至15日和5月17日至21日。费城(PA): AACR;癌症杂志,2021;81(13 -增刊):摘要nr LB013。
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