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New 1,2,3‐Triazole‐Tethered Chalcone Derivatives: Synthesis, Bioevaluation and Computational Study 新的 1,2,3-三唑系链查耳酮衍生物:合成、生物评估和计算研究
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2276239
In search of new active molecules, a small focused library of novel 1,2,3-triazoles based chalcone derivatives has been efficiently prepared via the click chemistry approach. All the synthesized compounds were characterized with the help of IR, 1H NMR, 13C NMR and mass spectroscopic techniques. The synthesized novel 1,2,3-triazoles based chalcone derivatives evaluated for their anti-inflammatory and antioxidant activity. Furthermore, molecular modeling study could support these outcomes by demonstrating very good binding affinities at the active site of the cyclooxygenase 2 (COX-2) iterating the potential of this scaffold for further optimization.
为了寻找新的活性分子,我们通过点击化学方法高效地制备了一个小型的基于 1,2,3-三唑的查尔酮衍生物库。利用红外光谱、1H NMR、13C NMR 和质谱技术对所有合成化合物进行了表征。合成的基于 1,2,3 三唑的新型查尔酮衍生物的抗炎和抗氧化活性得到了评估。此外,分子建模研究表明,这些衍生物与环氧合酶 2(COX-2)活性位点有很好的结合亲和力,从而证明了该支架具有进一步优化的潜力。
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引用次数: 0
Rate of Horizontal Spread of Fluorene in a Sandy Loam under Natural Environment 自然环境下芴在沙质壤土中的水平扩散速率
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2276240
Rate of horizontal movement of a pollutant such as polycyclic aromatic hydrocarbons in soil plays a major role in spread of pollutants in the segments of the environment. However, the study regarding this aspect is not widely reported. In the present work, the rate of horizontal spread of Fluorene in soil is determined in an experiment spread over a year under natural environment. Known amount of the hydrocarbon was added to a soil at a particular point, extraction of the same was done later on at definite time interval at definite distances from the point of application and quantitative determination was done by HPLC analysis of the extract. Eleven number of important physico-chemical parameters of the soil sample were determined/calculated in order to know the quality of the soil. The values of parameters are in agreement to the characteristics of a good soil. The experimental soil is a mild acidic sandy loam. It has been found that one-year time is sufficient for the applied quantity of the hydrocarbon to spread itself uniformly to attain a concentration, which is at par with natural concentration of the hydrocarbon in the experimental soil. Studies on kinetics of the reaction imply that the reaction occurs in different phases, rate constants being gradually increased with time. The positive influence of increase in ambient temperature and rainfall on disappearance of the hydrocarbon is seen in the experiment. It has been found that the most probable speed of the hydrocarbon for horizontal movement is 3.75 cm per month in the experimental soil.
污染物(如多环芳烃)在土壤中的水平移动速度对污染物在环境中的扩散起着重要作用。然而,有关这方面的研究报道并不多。本研究在自然环境下进行了为期一年的实验,测定了芴在土壤中的水平扩散速率。在特定位置向土壤中添加已知量的碳氢化合物,随后在距离添加点一定距离的特定时间间隔内提取相同的碳氢化合物,并通过高效液相色谱法对提取物进行定量测定。为了了解土壤的质量,对土壤样本的 11 个重要物理化学参数进行了测定/计算。参数值符合良好土壤的特征。实验土壤为弱酸性砂质壤土。研究发现,一年的时间足以让施用的碳氢化合物均匀扩散,达到与实验土壤中碳氢化合物天然浓度相当的浓度。对反应动力学的研究表明,反应发生在不同阶段,速率常数随时间逐渐增加。实验表明,环境温度和降雨量的增加对碳氢化合物的消失有积极影响。实验发现,在实验土壤中,碳氢化合物最有可能的水平移动速度是每月 3.75 厘米。
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引用次数: 0
Synthesis, Characterization, Theoretical Studies and in Vitro Embriyotoxic, Genotoxic and Anticancer Effects of Novel Phenyl(1,4,6-Triphenyl-2-Thioxo-1,2,3,4-Tetrahydropyrimidin-5-yl)Methanone 新型苯基(1,4,6-三苯基-2-硫酮-1,2,3,4-四氢嘧啶-5-基)甲酮的合成、表征、理论研究以及体外胚胎毒性、基因毒性和抗癌作用
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2276243
In this study, phenyl (1,4,6-triphenyl-2-thioxo-1,2,3,4-tetrahydropyrimidin-5-yl)methanone was obtained by using the Biginelli reaction method. The structure of this compound was analyzed using elemental analysis, IR, 1H, and 13C NMR. The quantum chemical calculations (QCC) of this compound were performed density functional theory (DFT) method, 6–31 G (d, p) base set, and B3LYP functions with the Gaussian09W software package. Literature shows that pyrimidine-derived compounds have very active biological properties. For this reason, the biologically active properties of the synthesized compound were also examined. To determine embryotoxic, genotoxic, and cytotoxic effects of compound, 3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyl-2H-tetrazolium bromide (MTT), lactate dehydrogenase (LDH) release, micronucleus (MN) and 8-OH-dG assays were carried out. On the other hand, pharmacokinetic and toxicity properties (ADMET) were predicted in silico via SwissADME and Protox-II web tools. In silico estimates of this compound used in the study showed that the compound has the covetable physicochemical properties for bioavailability. In conclusion, the obtained results of our study clearly showed that this compound exerted strong toxicity potential.
本研究采用 Biginelli 反应法获得了苯基(1,4,6-三苯基-2-硫酮-1,2,3,4-四氢嘧啶-5-基)甲酮。利用元素分析、红外光谱、1H 和 13C NMR 分析了该化合物的结构。该化合物的量子化学计算采用了密度泛函理论(DFT)方法、6-31 G (d, p) 基集和 B3LYP 函数,软件包为 Gaussian09W。文献显示,嘧啶衍生化合物具有非常活跃的生物特性。因此,我们也对合成化合物的生物活性特性进行了研究。为了确定化合物的胚胎毒性、基因毒性和细胞毒性作用,研究人员进行了 3-(4,5-二甲基噻唑-2-基)-2,5-二苯基-2H-溴化四氮唑(MTT)、乳酸脱氢酶(LDH)释放、微核(MN)和 8-OH-dG 检测。另一方面,通过 SwissADME 和 Protox-II 网络工具对药物代谢动力学和毒性特性(ADMET)进行了硅学预测。对研究中使用的这种化合物进行的硅学估算表明,该化合物具有生物利用度所需的理化特性。总之,我们的研究结果清楚地表明,该化合物具有很强的毒性潜力。
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引用次数: 0
First Approaches for the Novel Pyrido[1'',2'':2',3'][1,2,4]Triazolo [5',1',2,3][1,3]Thiazolo[4,5-b] Pyridines: Synthesis, Characterization and Antimicrobial Efficiency 新型吡啶并[1'',2'':2',3'][1,2,4]三唑并[5',1',2,3][1,3]噻唑并[4,5-b]吡啶的初探:合成、表征和抗菌效率
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2270555
Vilsmeier–Haack formylation of 3-aminothiazolotriazolopyridine-7,9-dicarbonitrile 3 afforded the corresponding aldehyde derivative 4 in a 65% yield. Some Schiff bases 5-7 were efficiently synthesized by reacting substrate 4 with some primary amines. Reaction of substrate 4 with some active methylene nitriles produced 2-amino-3-substituted-pyridotriazolothiazolopyridines 812. Substrate 4 was utilized as a key intermediate for a diversity of pyridotriazolothiazolopyrazolopyridines 13–15, through the Friedlander reaction with pyrazolidine-3,5-dione, 5-amino-2,4-dihydro-3H-pyrazol-3-one, and 5-phenyl-2,4-dihydro-3H-pyrazol-3-one. Further, the reaction of substrate 4 with 5-amino-3-methyl-1H-pyrazole and 6-aminouracil, as cyclic enamines, produced pyridotriazolothiazolopyrazolopyridine 16 and pyridotriazolothiazolopyridopyrimidine 17, respectively. The antimicrobial efficiency was assessed for the synthesized products, and some of them showed notable activity. The structures of the synthesized products were confirmed using analytical and spectroscopic data.
3-aminothiazolotriazolopyridine-7,9-dicarbonitrile 3 通过 Vilsmeier-Haack 甲酰化反应得到了相应的醛衍生物 4,产率为 65%。底物 4 与一些伯胺反应,可以高效合成一些希夫碱 5-7。底物 4 与一些活性亚甲基腈反应生成了 2-氨基-3-取代的吡啶三唑并噻唑并吡啶 8-12。底物 4 通过与吡唑烷-3,5-二酮、5-氨基-2,4-二氢-3H-吡唑-3-酮和 5-苯基-2,4-二氢-3H-吡唑-3-酮的弗里德兰德反应,被用作多种吡啶三唑噻唑并吡唑 13-15 的关键中间体。此外,底物 4 与作为环烯胺的 5-氨基-3-甲基-1H-吡唑和 6-氨基尿嘧啶反应后,分别生成了吡啶三唑噻唑并吡唑吡啶 16 和吡啶三唑噻唑并吡唑嘧啶 17。对合成产物的抗菌效率进行了评估,其中一些产物显示出显著的活性。利用分析和光谱数据确认了合成产物的结构。
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引用次数: 0
On Degree-Based Topological Indices of Kagome Graphene, and Carbon Kagome Nanotubes and Nanotori 基于度数的卡戈米石墨烯、碳卡戈米纳米管和纳米钛拓扑指数研究
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2273883
Approaches based on graph descriptors have been used in cheminformatics and bioinformatics for molecular property prediction. In this article, we apply partition technique and simple counting schemes to describe the structure of a two-dimensional (2D) kagome graphene and then derive the closed form of various degree-based topological indices (graph descriptor) of 2D kagome graphene, and its tubular and toroidal forms.
基于图描述符的方法已被用于化学信息学和生物信息学的分子特性预测。在本文中,我们应用分割技术和简单的计数方案来描述二维(2D)卡戈梅石墨烯的结构,然后推导出二维卡戈梅石墨烯及其管状和环状的各种基于度的拓扑指数(图描述符)的封闭形式。
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引用次数: 0
Experimental and Computational Study on the Spectroscopic Approach, Hyperpolarizabilities, NBO Analysis, ADMET Studies, and In-Silico Ligand-Protein Docking of 2,4,6-Trifluoro-5-Chloro Pyrimidine 关于 2,4,6-三氟-5-氯嘧啶的光谱学方法、超极化能力、NBO 分析、ADMET 研究和 In-Silico 配体-蛋白质对接的实验和计算研究
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2270122
The 2,4,6-trifluoro-5-chloro pyrimidine (TF5CP) was chosen for extensive investigation of its theoretical and experimental vibrational assignments, structural benchmarks, and spectroscopic (FT-IR, FT-Raman, UV–Vis, and NMR) investigations by Hartree–Fock (HF) functional with 6-311 + G(2d,p) basis set. The spectrum of detailed vibrational interpretation was to be provided by the MOLVIB software. Bonding orbitals participate in all stages of natural bond orbitals (NBO) analysis as donors and acceptors, which stabilizes molecules through intermolecular charge transfer. Molecular docking research was used to foresee the binding interactions of the TF5CP derivative with the receptor 3WZD. Auto-dock software was used to a conduct receptor–ligand docking investigation. According to the molecular docking results, the highest mean negative binding affinity (–5.639 kcal/mol) was exhibited by the current chemical. Based on the five-point rule of Lipinski, drug similarity was determined, and the ADMET variables were also predicted.
我们选择了 2,4,6-三氟-5-氯嘧啶(TF5CP),利用哈特里-福克(HF)函数和 6-311 + G(2d,p) 基集,对其理论和实验振动赋值、结构基准以及光谱(傅立叶变换红外光谱、傅立叶变换拉曼光谱、紫外可见光谱和核磁共振光谱)进行了广泛研究。详细的振动光谱解释由 MOLVIB 软件提供。键合轨道作为供体和受体参与自然键合轨道(NBO)分析的各个阶段,通过分子间电荷转移稳定分子。分子对接研究用于预测 TF5CP 衍生物与受体 3WZD 的结合相互作用。研究人员使用自动对接软件进行了受体与配体的对接研究。根据分子对接结果,目前的化学物表现出最高的平均负结合亲和力(-5.639 kcal/mol)。根据 Lipinski 的五点法则,确定了药物相似性,并预测了 ADMET 变量。
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引用次数: 0
Anti-Cancer Potential of Phytocompounds from Ziziphus jujuba against Lung Cancer Target Proteins: An In Silico Validation 酸枣仁中的植物化合物对肺癌靶蛋白的抗癌潜力:硅学验证
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2273878
Ziziphus jujuba plant belongs to Rhamnaceous family and grows mainly in Europe, southern and eastern Asia, and Australia. Recent phytochemical investigation of plants provided some information on their biological effects, such as the hepatoprotective, immunostimulating, anti-obesity, anti-inflammatory, and anti-cancer properties. The current study investigated 34 phytocompounds from Z. jujuba and three anti-cancer drugs against three lung cancer target proteins. Drug likeliness screening revealed that two compounds dodecanoic acid and 7,9-di-tert-butyl-1-oxaspiro[4,5]deca-6,9-diene-2,8-dione possess zero violation, and compound azelaic acid possesses single violation against five drug rules. Molecular docking study reveals that 34 phytocompounds from Z. jujuba and three anti-cancer drugs showed docking score values in the range of −3.9 to −10.2 kcal/mol and −7.2 to −9.0 kcal/mol against three significant lung cancer target proteins. Furthermore, in silico screening top scored three phytocompounds campesterol, stigmast-5-en-3-ol, 7,9-di-tert-butyl-1-oxaspiro[4,5]deca-6,9-diene-2,8-dione and three anti-cancer drugs etoposide, paclitaxel, and doxorubicin utilized. Pharmacokinetic profile of three phytocompounds from Z. jujuba showed excellent absorption, distribution, metabolism, excretion, and toxicity profile than standard drugs. Furthermore, bioactivity and density functional theory analysis showed that phytocompounds from Z. jujuba possess better bioactivity scores and molecular electrostatic potentials than standard drugs. Molecular dynamics simulation results revealed that campesterol with CDK2 (PDB ID 1GII) and MDM2/P53 (4HFZ) target proteins possess better simulation trajectories and binding affinity than standard drugs. Further clinical trials of compounds (campesterol, stigmast-5-en-3-ol, 7,9-di-tert-butyl-1-oxaspiro[4,5]deca-6,9-diene-2,8-dione) are needed to check clinical pertinence toward lung cancer target proteins to commercialize these novel drug molecule in the drug industry.
酸枣属于鼠李科植物,主要生长在欧洲、亚洲南部和东部以及澳大利亚。最近对植物进行的植物化学调查提供了一些有关其生物效应的信息,如保护肝脏、免疫刺激、抗肥胖、抗炎和抗癌特性。目前的研究调查了 34 种来自竹叶青的植物化合物和三种针对三种肺癌靶蛋白的抗癌药物。药物相似性筛选结果表明,十二酸和 7,9- 二叔丁基-1-氧杂螺[4,5]癸-6,9-二烯-2,8-二酮这两种化合物对五种药物规则的违反率为零,壬二酸化合物对五种药物规则的违反率为零。分子对接研究显示,34 种植物化合物和 3 种抗癌药物针对 3 种重要的肺癌靶蛋白的对接分值范围分别为 -3.9 至 -10.2 kcal/mol 和 -7.2 至 -9.0 kcal/mol。此外,还对三种植物化合物坎贝斯特醇、柱头甾-5-烯-3-醇、7,9-二叔丁基-1-氧杂螺[4,5]癸-6,9-二烯-2,8-二酮和三种抗癌药物依托泊苷、紫杉醇和多柔比星进行了硅学筛选。三种植物化合物的药代动力学特征表明,它们的吸收、分布、代谢、排泄和毒性特征均优于标准药物。此外,生物活性和密度泛函理论分析表明,与标准药物相比,竹叶青的植物化合物具有更好的生物活性评分和分子静电位。分子动力学模拟结果表明,莰烯醇与 CDK2(PDB ID 1GII)和 MDM2/P53 (4HFZ)靶蛋白的模拟轨迹和结合亲和力均优于标准药物。我们需要对化合物(坎贝酯醇、石杉碱甲-5-烯-3-醇、7,9-二叔丁基-1-氧杂螺[4,5]癸-6,9-二烯-2,8-二酮)进行进一步的临床试验,以检验其与肺癌靶蛋白的临床相关性,从而将这些新型药物分子商业化。
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引用次数: 0
DFT, Molecular Docking, Molecular Dynamics Simulation, and Hirshfeld Surface Analysis of 2-Phenylthioaniline 2-Phenylthioaniline 的 DFT、分子对接、分子动力学模拟和 Hirshfeld 表面分析
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2270128
Utilizing NMR (1H-NMR and 13C-NMR), FT-IR, UV-Visible, and quantum chemical approaches by using the DFT technique, experiments on 2-phenylthioanline were carried out. The B3LYP method and the 6-311++G(d,p) basis set were used to optimize the molecular structure and vibrational modes. The ideal binding parameters match up well with the experimental binding parameters. VEDA successfully finished the assignments concerning the distribution of potential energy. The GIAO method was used to calculate shifts in the 1H-NMR and 13C-NMR, and the outcomes were compared to experimental spectra. The TDDFT approach and the CPCM solvent model were used to examine electronic properties such as UV-Vis (in the gas phase, methanol, Acetone, and DCM), and the results were compared to experimental UV-Vis spectra. The HOMO/LUMO energy values provide sufficient proof of such. Molecular docking and dynamic simulations were carried out with a 2HI4 protein target and gave the best result among the three proteins.
利用核磁共振(1H-NMR 和 13C-NMR)、傅立叶变换红外光谱、紫外-可见光谱以及 DFT 技术的量子化学方法,对 2-苯基硫氨酸进行了实验。实验采用 B3LYP 方法和 6-311++G(d,p) 基集对分子结构和振动模式进行了优化。理想的结合参数与实验结合参数非常吻合。VEDA 成功地完成了有关势能分布的赋值。利用 GIAO 方法计算了 1H-NMR 和 13C-NMR 的位移,并将结果与实验光谱进行了比较。利用 TDDFT 方法和 CPCM 溶剂模型研究了 UV-Vis 等电子特性(在气相、甲醇、丙酮和 DCM 中),并将结果与实验 UV-Vis 光谱进行了比较。HOMO/LUMO 能值充分证明了这一点。以 2HI4 蛋白质为目标进行了分子对接和动态模拟,结果在三种蛋白质中最好。
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引用次数: 0
A Review on Synthesis and Biological Applications of Quinoline Derivative as Fused Aromatic Compounds 喹啉衍生物作为融合芳香族化合物的合成与生物应用综述
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-10-20 DOI: 10.1080/10406638.2023.2270118
Quinoline is a N-containing heterocyclic organic compounds with significant biological importance in pharmaceuticals field as well as natural products. They exhibit excellent pharmacological activities. To synthesize quinoline and their derivatives several synthetic methods have reported, such as conventional method, ultrasonic method, microwave (MW) irradiation method, with or without catalytic reaction, which have various pharmacological and biological activities, such as antibacterial, antifungal, anticancer, anti-HIV, antimalarial, antitumor, and anti-inflammatory activity. The objective of this review is to compile various synthetic methods were used for the formation of the Quinoline derivatives and their biological importance, such as antibacterial, anticancer, anti-microbial, antimalarial, antileishmanial, antifungal, and anti-inflammatory during 2010–2023, which will help the researchers how are working in this area.
喹啉是一种含 N 的杂环有机化合物,在医药和天然产品领域具有重要的生物学意义。它们具有出色的药理活性。合成喹啉及其衍生物的方法有多种,如传统方法、超声波法、微波(MW)辐照法、催化反应或非催化反应等,这些方法具有多种药理和生物活性,如抗菌、抗真菌、抗癌、抗 HIV、抗疟、抗肿瘤和抗炎活性。本综述旨在汇编 2010-2023 年间用于生成喹啉衍生物的各种合成方法及其生物学重要性,如抗菌、抗癌、抗微生物、抗疟疾、抗利什曼病、抗真菌和抗炎等,这将有助于在该领域开展工作的研究人员。
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引用次数: 0
A Novel Approach to Investigate Sadhana and PI Indices 调查 Sadhana 和 PI 指数的新方法
IF 2.4 3区 化学 Q2 CHEMISTRY, ORGANIC Pub Date : 2024-09-13 DOI: 10.1080/10406638.2023.2259566
A topological index is a number used in QSAR and QSPR research to assess the structural properties of a graph. The Sadhana and PI, polynomial-based topological indices, have been intensively explored in the study of chemical graph theory since a few years ago. These indices are computed using their related polynomials, however, in this study, we use an instantaneous and revolutionary approach to compute these indices for hexagonal boron nitride graphs and carbon nanotube structures.
拓扑指数是 QSAR 和 QSPR 研究中用来评估图形结构特性的数字。自几年前以来,基于多项式的拓扑指数 Sadhana 和 PI 在化学图论研究中得到了深入探讨。然而,在本研究中,我们采用了一种革命性的瞬时方法来计算六方氮化硼图和碳纳米管结构的这些指数。
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引用次数: 0
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Polycyclic Aromatic Compounds
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