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Quantitative Structure-activity Relationships最新文献

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Dimyristoyl Phosphatidylcholine/water Partitioning-dependent Modeling of Narcotic Toxicity toTetrahymena pyriformis 二肉豆蔻酰磷脂酰胆碱/水分割依赖的梨形四膜虫麻醉毒性模型
Pub Date : 2000-10-01 DOI: 10.1002/1521-3838(200010)19:4<339::AID-QSAR339>3.0.CO;2-E
T. Schultz, J. Seward
Regression-type structure-toxicity relationships have been developed between Tetrahymena pyriformis population growth impairment toxicity data (log 1/IGC50) and the dimyristoyl phosphatidylcholine/water partition coefficient (log KDMPC) or the 1-octanol/water partition coefficient (log Kow). A statistically robust model [log(1/ IGC50)= 0.73 log (KDMPC)−1.62; n=23, r2=0.926, s=0.24, F=263, Pr/gt F=0.0001] was found for non-polar narcotics, polar narcotics, as well as esters with the DMPC partition coefficient. The above model was statistically better than the model [log(1/IGC50) = 0.71 (log Kow) − 1.60; n = 23, r2 = 0.828, s = 0.39, F = 101, Pr> F = 0.0001] developed for the same compounds with 1-octanol/water partitioning as the independent variable. The former equation does not explain the difference in the acute mechanisms of toxic action known to exist in fish for non-polar and polar narcotics. However, log KDMPC appears to correct for differences in the concentration of toxicant reaching the site of toxic action between narcotic mechanisms. Outliers to the log KDMPC model were primary aliphatic amines.
梨形四膜虫种群生长损伤毒性数据(log 1/IGC50)与二肉豆蔻酰磷脂酰胆碱/水分配系数(log KDMPC)或1-辛醇/水分配系数(log Kow)之间建立了回归型结构-毒性关系。统计稳健性模型[log(1/ IGC50)= 0.73 log(KDMPC)−1.62;n=23, r2=0.926, s=0.24, F=263, Pr/gt F=0.0001]对非极性麻醉药、极性麻醉药以及具有DMPC分配系数的酯类均有显著性影响。上述模型在统计学上优于模型[log(1/IGC50) = 0.71 (log Kow)−1.60;n = 23, r2 = 0.828, s = 0.39, F = 101, Pr> F = 0.0001],以1-辛醇/水分配为自变量。前一个方程并不能解释已知存在于鱼类体内的非极性和极性麻醉品的急性毒性作用机制的差异。然而,log KDMPC似乎纠正了麻醉机制之间到达毒性作用部位的毒物浓度的差异。对数KDMPC模型的异常值是初级脂肪胺。
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引用次数: 7
Quantitative Structure-Activity Relationships (QSAR) Study of Flavonoid Derivatives for Inhibition of Cytochrome P450 1A2 类黄酮衍生物抑制细胞色素P450 - 1A2的定量构效关系研究
Pub Date : 2000-06-01 DOI: 10.1002/1521-3838(200006)19:3<257::AID-QSAR257>3.0.CO;2-2
T. Moon, M. Chi, Donghyun Kim, C. Yoon, Young-Sang Choi
The quantitative structure-activity relationships (QSAR) studies on flavonoid derivatives as cytochrome P450 1A2 inhibitors were performed using multiple linear regression analysis (MLR) and neural networks (NN). The results of MLR and NN show that Hammett constant, the highest occupied molecular orbital energy (HOMO), the nonoverlap steric volume, the partial charge of C3 carbon atom, and the HOMO π coefficients of C3, C3′ and C4′ carbon atoms of flavonoids play an important role in inhibitory activity. The correlations between the descriptors and the activities were improved by neural networks although the descriptors of optimum MLR model were used in the networks, which implies that the descriptors used in MLR model include nonlinear relationships. Moreover, neural networks using descriptors selected by the pruning method gave higher r2 value than neural networks using MLR descriptors.
采用多元线性回归分析(MLR)和神经网络(NN)对黄酮类衍生物作为细胞色素P450 1A2抑制剂的构效关系进行了定量研究。MLR和NN结果表明,汉米特常数、最高已占据分子轨道能(HOMO)、非重叠空间体积、C3碳原子的部分电荷以及C3、C3′和C4′碳原子的HOMO π系数对黄酮类化合物的抑制活性有重要影响。尽管网络中使用了最优MLR模型的描述符,但神经网络改善了描述符与活动之间的相关性,这表明MLR模型中使用的描述符包含非线性关系。此外,使用剪枝方法选择描述符的神经网络比使用MLR描述符的神经网络具有更高的r2值。
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引用次数: 32
Multivariate Data Analysis of Topographically Modified α‐Melanotropin Analogues using Auto and Cross Auto Covariances (ACC) 利用自方差和交叉自方差(ACC)对地形修饰的α -促黑素类似物进行多变量数据分析
Pub Date : 2000-06-01 DOI: 10.1002/1521-3838(200006)19:3<264::AID-QSAR264>3.0.CO;2-A
Åsa Nyström, P. Andersson, T. Lundstedt
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引用次数: 24
The Thirty-one Benchmark Steroids Revisited: Comparative Molecular Moment Analysis (CoMMA) with Principal Component Regression 31个基准类固醇重新审视:比较分子矩分析(逗号)与主成分回归
Pub Date : 2000-06-01 DOI: 10.1002/1521-3838(200006)19:3<237::AID-QSAR237>3.0.CO;2-A
B. Silverman
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引用次数: 21
An Approach to Calculate the Toxicity of Simple Organic Molecules on the Basis of QSAR Analysis inHydractinia echinata (Hydrozoa, Cnidaria) 基于QSAR分析计算简单有机分子对棘刺水螅(Hydrozoa, Cnidaria)毒性的方法
Pub Date : 2000-06-01 DOI: 10.1002/1521-3838(200006)19:3<227::AID-QSAR227>3.0.CO;2-E
S. Chicu, K. Herrmann, S. Berking
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引用次数: 20
Development of Predictive Retention-Activity Relationship Models of Barbiturates by Micellar Liquid Chromatography 巴比妥酸盐胶束液相色谱预测保留-活性关系模型的建立
Pub Date : 2000-06-01 DOI: 10.1002/1521-3838(200006)19:3<247::AID-QSAR247>3.0.CO;2-6
Y. Martín-Biosca, M. Molero-Monfort, S. Sagrado, R. Villanueva-Camañas, M. Medina-Hernández
The need to get a tool for biological parameters estimation of new compounds for clinical applications, supports the postulation of predictive models as an alternative to conventional classical assays being no necessary the use of experimentation in animals. Our main aim in this work is to determine correlations between the logarithm of capacity factors and preclinical pharmacology and therapeutic efficacy parameters of barbiturates. The predictive and interpretative capability of quantitative chromatographic retention-biological activity models is supported by the fact that in adequate experimental conditions the solute partitioning into chromatographic system can emulate the solute partitioning into lipid bilayers of biological membranes, which is the basis for drug and metabolite uptake, passive transport across membranes and bioaccumulation. Thirteen barbiturates were included in the study. The RP-HPLC capacity factors of barbiturates were determined using different Brij35 concentrations as micellar mobile phases. Relationships between sixteen biological activities of barbiturates reported in bibliography and retention data are established and their predictive and interpretative ability are evaluated. These logarithmic relationships were significant between preclinical pharmacology parameters and the retention factors of barbiturates; so the regression coefficients (R2) for ED, EC50-LRR and duration of action were 0.97, 0.98 and 0.95, respectively. These relationships were great too for therapeutic efficacy parameters; i.e for IC50, Ki (50% inhibition displaceable [14C]-amobarbital binding to acetylcholine receptor-rich membranes) and Ki (for PIP-kinase) (R2=0.98). The results indicate, the retention of compounds in MLC, which depends on hydrophobic, electronic and steric features of compounds and is measured in flow conditions, is capable to describe and predict in vitro the biological responses of barbiturates. This approach merits further exploration in other classes of compounds.
对临床应用的新化合物的生物学参数估计工具的需求,支持了预测模型作为传统经典分析的替代假设,而无需在动物实验中使用。我们在这项工作中的主要目的是确定容量因子的对数与巴比妥类药物的临床前药理学和治疗效果参数之间的相关性。定量色谱保留-生物活性模型的预测和解释能力得到了这样一个事实的支持:在适当的实验条件下,色谱系统中的溶质分配可以模拟溶质分配到生物膜的脂质双层,这是药物和代谢物摄取、膜间被动运输和生物积累的基础。13种巴比妥类药物被纳入研究。以不同浓度的Brij35为胶束流动相,测定巴比妥酸盐的RP-HPLC容量因子。本文建立了文献中报道的16种巴比妥类药物生物活性与保留数据之间的关系,并对其预测和解释能力进行了评价。临床前药理学参数与巴比妥类药物的保留因子呈显著的对数关系;ED、EC50-LRR和作用时间的回归系数R2分别为0.97、0.98和0.95。这些关系在治疗效果参数上也很显著;即对于IC50, Ki(50%的抑制可置换[14C]-阿莫巴比妥结合到富含乙酰胆碱受体的膜上)和Ki(对于pip激酶)(R2=0.98)。结果表明,化合物在MLC中的保留率取决于化合物的疏水性、电子和位阻特征,并在流动条件下测量,能够描述和预测巴比妥酸盐的体外生物反应。这种方法值得在其他种类的化合物中进一步探索。
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引用次数: 13
A Comparative Molecular Field Analysis of Inhibitors of Tubulin Polymerization 微管蛋白聚合抑制剂的分子场比较分析
Pub Date : 2000-04-01 DOI: 10.1002/1521-3838(200004)19:2<142::AID-QSAR142>3.0.CO;2-0
Mathias Weigt, M. Wiese
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引用次数: 5
Comparative Molecular Field Analysis of Selective Cyclooxygenase‐2 (COX‐2) Inhibitors 选择性环氧合酶2 (COX‐2)抑制剂的比较分子场分析
Pub Date : 2000-04-01 DOI: 10.1002/1521-3838(200004)19:2<127::AID-QSAR127>3.0.CO;2-P
C. Marot, P. Chavatte, D. Lesieur
The 3D-QSAR approach has been used to obtain informations about the active conformation of selective cyclo-oxygenase-2 (COX-2) inhibitors. In this paper, we have compared different combinations of two fields (steric and electrostatic) in order to optimize the 3D-QSAR models of selective COX-2 inhibitors. Assuming that all the compounds interact at the same binding site at the enzyme level, DuP697 pharmacophoric conformation served as a template for the superimposition of 54 structurally heterogeneous COX-2 inhibitors constituting both the training and test sets used to perform a 3D-QSAR study via the CoMFA method. A statistically significant model was obtained with 38 compounds of the training set (n=38, q2=0,70, N=3, r2=0,93, s=0,38, F=156) with steric and electrostatic relative contributions of 40% and 60%, respectively. The predictive power of the proposed model was discerned by successfully testing the 16 compounds constituting the test set. The so obtained and validated model brings important structural insights to aid the design of novel anti-inflammatory drugs prior to their synthesis.
3D-QSAR方法已被用于获得选择性环氧化酶-2 (COX-2)抑制剂活性构象的信息。在本文中,我们比较了两种场(空间和静电)的不同组合,以优化选择性COX-2抑制剂的3D-QSAR模型。假设所有化合物在酶水平上在相同的结合位点相互作用,DuP697的药效构象作为54个结构异质COX-2抑制剂的叠加模板,构成了通过CoMFA方法进行3D-QSAR研究的训练集和测试集。训练集的38个化合物(n=38, q2=0,70, n=3, r2=0,93, s=0,38, F=156)的空间和静电相对贡献分别为40%和60%,得到了具有统计学意义的模型。通过成功测试构成测试集的16种化合物来识别所提出模型的预测能力。因此获得和验证的模型带来了重要的结构见解,以帮助在合成之前设计新的抗炎药物。
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引用次数: 26
QSAR Analysis of Substituted 2‐Phenylhydrazonoacetamides Acting as Inhibitors of 15‐Lipoxygenase 取代2‐苯基肼乙酰胺作为15‐脂氧合酶抑制剂的QSAR分析
Pub Date : 2000-04-01 DOI: 10.1002/1521-3838(200004)19:2<162::AID-QSAR162>3.0.CO;2-T
Romy Fleischer, P. Frohberg, A. Büge, P. Nuhn, M. Wiese
An evaluation of quantitative structure-activity relationships (QSAR) for 28 N1-phenyl-2-phenylhydrazonoacetamides, that are inhibitors of soybean 15-lipoxygenase was carried out with different statistical methods. Initially the variation of structure was characterized by the Free-Wilson method and analyzed by multiple linear regression (MLR) and partial least squares analysis (PLS). Both methods revealed an increase in activity, if the N1-phenyl substituent of the parent molecule is meta-substituted with groups, that show a positive resonance effect at the annular structure. To include physicochemical aspects a combined Free-Wilson-Hansch approach was used. Because of high intercorrelations among some physicochemical parameters a principal component-analysis (PCA) was performed to extract information from those intercorrelated variables in a few principal components (PC's). The resulting equations indicate that besides an electron donating group at the central amidrazone moiety electronic effects at the arylhydrazone substituent play an important role for the biological activity.
采用不同的统计方法对28种抑制大豆15-脂氧合酶的n1 -苯基-2-苯肼乙酰胺进行了定量构效关系评价。首先采用Free-Wilson方法对结构变化进行表征,然后采用多元线性回归(MLR)和偏最小二乘分析(PLS)对结构变化进行分析。两种方法均表明,如果母体分子的n1 -苯基取代基被元取代,则在环状结构上显示出正共振效应,则活性增加。为了包括物理化学方面,使用了一种组合的Free-Wilson-Hansch方法。由于一些理化参数之间具有高度的相关性,采用主成分分析(PCA)方法从这些相关变量中提取信息。结果表明,芳基腙取代基上的电子效应除了在中间给电子基团外,对生物活性起重要作用。
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引用次数: 3
Use of Quantitative Structure Activity Relationships in Prediction of CMC of Nonionic Surfactants 定量构效关系在非离子表面活性剂CMC预测中的应用
Pub Date : 2000-04-01 DOI: 10.1002/1521-3838(200004)19:2<135::AID-QSAR135>3.0.CO;2-T
M. Jalali-Heravi, E. Konouz
The CMC of a set of 51 alkylpolyoxyethylene glycol ethers, R(EO)m, and alkylphenol (ethylene oxide) ethers, Rϕ(EO)m, was related to topological, electronic and molecular structure parameters using a stepwise regression method. In development of the models linear and quadratic terms were used without the use of cross terms. Different strategies including Akaike Information Criterion (AIC) were used for choosing the best model. Specification of the best model in agreement with the experiment indicates that volume of the hydrophobic group and surface area of the molecule play a major role in the mechanism of micellization of nonionic surfactants. It was demonstrated that the CMC of these compounds depend upon the orientation of carbon atoms at the interface of two phases. The predicted values of CMC using the best model for R(EO)m molecules containing even number of EO groups are better than that for the molecules with odd number of EOs.
采用逐步回归方法对51种烷基聚氧乙二醇醚R(EO)m和烷基酚(环氧乙烷)醚rφ (EO)m的CMC与拓扑结构、电子结构和分子结构参数的关系进行了研究。在模型的开发中,使用了线性项和二次项,而不使用交叉项。采用赤池信息准则(Akaike Information Criterion, AIC)等不同策略选择最佳模型。最佳模型的确定与实验结果一致,表明疏水基团的体积和分子的表面积对非离子表面活性剂的胶束化机理起主要作用。结果表明,这些化合物的CMC取决于两相界面上碳原子的取向。最佳模型对含有偶数个EO基团的R(EO)m分子的CMC预测值优于含有奇数个EO基团的R(EO)m分子的CMC预测值。
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引用次数: 5
期刊
Quantitative Structure-activity Relationships
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