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Corrigendum to "Genome-wide transcriptional effects of deletions of sulphur metabolism genes in Drosophila melanogaster" [Redox Biol. 36 (2020) 101654]. 黑腹果蝇硫代谢基因缺失的全基因组转录效应"[Redox Biol.
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-18 DOI: 10.1016/j.redox.2024.103431
O Zatsepina, D Karpov, L Chuvakova, A Rezvykh, S Funikov, S Sorokina, A Zakluta, D Garbuz, V Shilova, M Evgen'ev
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引用次数: 0
Corrigendum to "Complement receptor 3 mediates NADPH oxidase activation and dopaminergic neurodegeneration through a Src-Erk-dependent pathway" [Redox Biol. 14 (2018) 250-260]. 补体受体3通过Src-Erk依赖途径介导NADPH氧化酶活化和多巴胺能神经退行性变》[Redox Biol. 14 (2018) 250-260]的更正。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-18 DOI: 10.1016/j.redox.2024.103429
Liyan Hou, Ke Wang, Cong Zhang, Fuqiang Sun, Yuning Che, Xiulan Zhao, Dan Zhang, Huihua Li, Qingshan Wang
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引用次数: 0
Aβ1-42 promotes microglial activation and apoptosis in the progression of AD by binding to TLR4 Aβ1-42 通过与 TLR4 结合,促进小神经胶质细胞活化和凋亡,从而导致老年痴呆症的发展。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-14 DOI: 10.1016/j.redox.2024.103428
Rui-xia Dou , Ya-min Zhang , Xiao-juan Hu , Fu-Lin Gao , Lu-Lu Zhang , Yun-hua Liang , Yin-ying Zhang , Yu-ping Yao , Li Yin , Yi Zhang , Cheng Gu
Alzheimer's disease (AD) is one of the most common age-related neurodegenerative diseases and the most devastating form of senile dementia. It has a complex mechanism and no effective treatment. Exploring the pathogenesis of AD and providing ideas for treatment can effectively improve the prognosis of AD. Microglia were incubated with β-amyloid protein 1-42 (Aβ1-42) to construct an AD cell model. After microglia were activated, cell morphology changed, the expression level of inflammatory factors increased, cell apoptosis was promoted, and the expression of microtubule-associated protein (Tau protein) and related proteins increased. By up-regulating and down-regulating Toll-like receptor 4 (TLR4), the cells were divided into TLR4 knockdown negative control group(Lv-NC group), TLR4 knockdown group(Lv-TLR4 group), TLR4 overexpression negative control group(Sh-NC group), and TLR4 overexpression group(Sh-TLR4 group). The expression of inflammatory factors was detected again. It was found that compared with the Lv-NC group, the expression of various inflammatory factors in the Lv-TLR4 group decreased, cell apoptosis was inhibited, and the expression of Tau protein and related proteins decreased. Compared with the Sh-NC group, the expression of inflammatory factors in the Sh-TLR4 group increased, cell apoptosis was promoted, and the expression of Tau protein and related proteins increased. These results indicate that Aβ1-42 may promote microglial activation and apoptosis by binding to TLR4. Reducing the expression of TLR4 can reduce the occurrence of inflammatory response in AD cells and slow down cell apoptosis. Therefore, TLR4 is expected to become a new target for the prevention and treatment of AD.
阿尔茨海默病(AD)是最常见的老年性神经退行性疾病之一,也是最具破坏性的老年痴呆症。它的发病机制复杂,目前尚无有效的治疗方法。探索老年痴呆症的发病机制并提供治疗思路能有效改善老年痴呆症的预后。用β淀粉样蛋白1-42(Aβ1-42)培养小胶质细胞,构建AD细胞模型。小胶质细胞被激活后,细胞形态发生变化,炎症因子表达水平升高,细胞凋亡加快,微管相关蛋白(Tau 蛋白)及相关蛋白表达增加。通过上调和下调Toll样受体4(TLR4),将细胞分为TLR4敲除阴性对照组(Lv-NC组)、TLR4敲除组(Lv-TLR4组)、TLR4过表达阴性对照组(Sh-NC组)和TLR4过表达组(Sh-TLR4组)。再次检测炎症因子的表达。结果发现,与 Lv-NC 组相比,Lv-TLR4 组各种炎症因子的表达量减少,细胞凋亡受到抑制,Tau 蛋白及相关蛋白的表达量减少。与 Sh-NC 组相比,Sh-TLR4 组炎症因子的表达增加,细胞凋亡得到促进,Tau 蛋白及相关蛋白的表达增加。这些结果表明,Aβ1-42 可通过与 TLR4 结合促进小胶质细胞活化和凋亡。降低 TLR4 的表达可减少 AD 细胞炎症反应的发生,减缓细胞凋亡。因此,TLR4有望成为预防和治疗AD的新靶点。
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引用次数: 0
Time-restricted eating reveals a "younger" immune system and reshapes the intestinal microbiome in human. 限时进食显示了 "年轻 "的免疫系统,并重塑了人类的肠道微生物群。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-09 DOI: 10.1016/j.redox.2024.103422
Yiran Chen, Xi Li, Ming Yang, Chen Jia, Zhenghao He, Suqing Zhou, Pinglang Ruan, Yikun Wang, Congli Tang, Wenjing Pan, Hai Long, Ming Zhao, Liwei Lu, Weijun Peng, Arne Akbar, Irene Xy Wu, Song Li, Haijing Wu, Qianjin Lu

Time-restricted eating (TRE) has been shown to extent lifespans in drosophila and mouse models by affecting metabolic and anti-inflammatory activities. However, the effect of TRE on the human immune system, especially on immunosenescence, intestinal microbiome, and metabolism remains unclear. We conducted a 30-day 16:8 TRE single-arm clinical trial with 49 participants. Participants consumed daily meals from 9 a.m. to 5 p.m., provided by a nutrition canteen with a balanced, calorie-appropriate nutrition, which is designed by clinical nutritionists (ChiCTR2200058137). We monitored weight changes and weight-related parameters and focused on changes in the frequency of CD4+ senescent T cells, immune repertoire from peripheral blood, as well as serum metabolites and gut microbiota. We found that up to 95.9 % of subjects experienced sustained weight loss after TRE. The frequency of circulating senescent CD4+ T cells was decreased, while the frequency of Th1, Treg, Tfh-like, and B cells was increased. Regarding the immune repertoire, the proportions of T cell receptor alpha and beta chains were increased, whereas B cell receptor kappa and lambda chains were reduced. In addition, a reduced class switch recombination from immunoglobulin M (IgM) to immunoglobulin A (IgA) was observed. TRE upregulated the levels of anti-inflammatory and anti-aging serum metabolites named sphingosine-1-phosphate and prostaglandin-1. Additionally, several anti-inflammatory bacteria and probiotics were increased, such as Akkermansia and Rikenellaceae, and the composition of the gut microbiota tended to be "younger". Overall, TRE showed multiple anti-aging effects, which may help humans maintain a healthy lifestyle to stay "young". Clinical Trial Registration URL: https://www.chictr.org.cn/showproj.html?proj=159876.

限时进食(TRE)通过影响新陈代谢和抗炎活动,延长了果蝇和小鼠模型的寿命。然而,限时进食对人体免疫系统的影响,尤其是对免疫衰老、肠道微生物组和新陈代谢的影响仍不清楚。我们对 49 名参与者进行了为期 30 天的 16:8 TRE 单臂临床试验。参与者每天从上午 9 点到下午 5 点进餐,由临床营养师设计的营养食堂提供均衡、热量适宜的营养(ChiCTR2200058137)。我们监测了体重变化和与体重相关的参数,并重点研究了 CD4+ 衰老 T 细胞频率、外周血免疫细胞群以及血清代谢物和肠道微生物群的变化。我们发现,多达 95.9% 的受试者在服用 TRE 后体重持续下降。循环中衰老的 CD4+ T 细胞的数量减少了,而 Th1、Treg、Tfh 样细胞和 B 细胞的数量增加了。在免疫序列方面,T细胞受体α链和β链的比例增加,而B细胞受体卡帕链和λ链的比例减少。此外,还观察到从免疫球蛋白 M(IgM)到免疫球蛋白 A(IgA)的类别转换重组减少。TRE 提高了抗炎和抗衰老血清代谢物(鞘氨醇-1-磷酸酯和前列腺素-1)的水平。此外,一些抗炎细菌和益生菌也有所增加,如 Akkermansia 和 Rikenellaceae,肠道微生物群的组成也趋于 "年轻化"。总之,TRE显示出多种抗衰老作用,可帮助人类保持健康的生活方式,从而保持 "年轻"。临床试验注册网址:https://www.chictr.org.cn/showproj.html?proj=159876。
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引用次数: 0
Deficiency of muscle-generated brain-derived neurotrophic factor causes inflammatory myopathy through reactive oxygen species-mediated necroptosis and pyroptosis 肌肉生成的脑源性神经营养因子缺乏会通过活性氧介导的坏死和热解作用引起炎性肌病。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-08 DOI: 10.1016/j.redox.2024.103418
Brian Pak Shing Pang , Elsie Chit Yu Iu , Miaojia Hang , Wing Suen Chan , Margaret Chui Ling Tse , Connie Tsz Ying Yeung , Mingfu Wang , Parco Ming Fai Siu , Chi Wai Lee , Keqiang Ye , Ho So , Chi Bun Chan
Idiopathic inflammatory myopathy (commonly known as myositis) is a group of immune-related diseases characterized by muscle damage, weakness, and fatigue with unknown causes. Although overactivated innate immunity is a widely believed cause of myositis onset, the mechanism that provokes and maintains a high immune response in myositis patients is still unclear. This study aims to test if brain-derived neurotrophic factor (BDNF) deficiency per se is sufficient to cause myositis and determine its underlying mechanism. We found that ablating BDNF production in skeletal muscle is sufficient to trigger myositis development in mice. Muscle-specific Bdnf knockout (MBKO) mice displayed extensive myocyte necrosis, mononuclear cell infiltration, and myophagocytosis. In association with these damages, elevated production of pro-inflammatory cytokines such as interleukin (IL) 23, IL-1β, IL-18, and tumor necrosis factor α (TNFα) was found in the muscle of MBKO mice. Disruption of sarcolemma integrity was also detected in MBKO mice, which is a result of necroptosis executioner Mixed lineage kinase domain-like protein (MLKL) and pyroptosis executioner Gasdermin D (GSDMD) activation. Mechanistically, diminishing BDNF synthesis in myotubes enhances the accumulation of mitochondrial reactive oxygen species (mtROS), which sensitizes the cells towards TNFα-induced receptor-interacting protein kinase (RIPs) activation and promotes the formation of NLR family pyrin domain containing 3 (NLRP3)-containing inflammasome. BDNF deficiency-induced cell death could be alleviated by scavenging mtROS, suppressing the activity of GSDMD, or inhibiting receptor-interacting kinase 3 (RIP3). Similarly, supplementation of BDNF mimetics, suppression of RIP3 activity, increasing the intramyocellular antioxidant, or enhancing mitophagy ameliorated the myopathies of MBKO mice and improved their muscle strength. Together, our study demonstrates that insufficient BDNF production in mouse muscle causes the development of pathological features of myositis via enhancing oxidative stress, necroptosis, and pyroptosis in myofibers.
特发性炎症性肌病(俗称肌炎)是一组与免疫相关的疾病,以肌肉损伤、虚弱和疲劳为特征,病因不明。虽然人们普遍认为先天性免疫过度激活是肌炎发病的原因之一,但引发和维持肌炎患者高免疫反应的机制仍不清楚。本研究旨在检测脑源性神经营养因子(BDNF)缺乏本身是否足以导致肌炎,并确定其潜在机制。我们发现,消减骨骼肌中的 BDNF 生成足以引发小鼠肌炎的发生。肌肉特异性 Bdnf 基因敲除(MBKO)小鼠表现出广泛的肌细胞坏死、单核细胞浸润和噬肌细胞增多。与这些损伤相关的是,MBKO 小鼠肌肉中白细胞介素(IL)23、IL-1β、IL-18 和肿瘤坏死因子 α(TNFα)等促炎细胞因子的分泌增加。在 MBKO 小鼠体内还发现了肌浆完整性的破坏,这是坏死凋亡刽子手混合系激酶结构域样蛋白(MLKL)和热凋亡刽子手加斯德明 D(GSDMD)激活的结果。从机理上讲,减少肌小管中的 BDNF 合成会增强线粒体活性氧(mtROS)的积累,从而使细胞对 TNFα 诱导的受体相互作用蛋白激酶(RIPs)活化敏感,并促进含 NLR 家族 pyrin domain containing 3(NLRP3)的炎性小体的形成。通过清除mtROS、抑制GSDMD的活性或抑制受体相互作用激酶3(RIP3),可缓解BDNF缺乏诱导的细胞死亡。同样,补充 BDNF 模拟物、抑制 RIP3 活性、增加细胞内抗氧化剂或增强有丝分裂吞噬作用,都能改善 MBKO 小鼠的肌病并增强其肌肉力量。总之,我们的研究表明,小鼠肌肉中的 BDNF 生成不足会通过增强肌纤维中的氧化应激、坏死和裂解而导致肌炎病理特征的形成。
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引用次数: 0
PRDM16 suppresses ferroptosis to protect against sepsis-associated acute kidney injury by targeting the NRF2/GPX4 axis PRDM16通过靶向NRF2/GPX4轴抑制铁蛋白沉积,以防止脓毒症相关急性肾损伤。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-07 DOI: 10.1016/j.redox.2024.103417
Qiang Zheng , Jihong Xing , Xiaozhou Li , Xianming Tang , Dongshan Zhang
Acute kidney injury (AKI) constitutes a significant public health issue. Sepsis accounts for over 50 % of AKI cases in the ICU. Recent findings from our research indicated that the PRD1-BF1-RIZ1 homeodomain protein 16 (PRDM16) inhibited the progression of diabetic kidney disease (DKD). However, its precise role and regulatory mechanism in sepsis-induced AKI remain obscure. This study reveals that lipopolysaccharide (LPS) and cecum ligation and puncture (CLP) instigated PRDM16 expression in Boston University mouse proximal tubule (BUMPT) cells and mouse kidneys, respectively. Functionally, PRDM16 curtailed LPS-induced ferroptosis. Mechanistically, PRDM16 associates with the promoter regions of nuclear factor-erythroid 2-related factor-2 (NRF2) and augments its expression, subsequently enhancing glutathione peroxidase 4 (GPX4) expression. Additionally, PRDM16 directly engages with the promoter regions of GPX4, stimulating its expression. Notably, these observations were corroborated in human renal tubular epithelial (HK-2) cells. Furthermore, the ablation of PRDM16 from kidney proximal tubules in mice inhibited NRF2 and GPX4 expression, leading to decreased glutathione (GSH)/oxidized glutathione (GSSG) ratio, increased Fe2+ and reactive oxygen species (ROS) production, exacerbated ferroptosis, and AKI progression. Conversely, PRDM16 knock-in exhibited the opposite effects. Ultimately, adenovirus (ADV)-PRDM16 plasmid or poly (lactide-glycolide acid) (PLGA)-encapsulated formononetin not only mitigated sepsis-induced AKI but also alleviated liver, cardiac, and lung injury. In summary, PRDM16 inhibits ferroptosis via the NRF2/GPX4 axis or GPX4 to prevent sepsis-induced multi-organ injury, including AKI. PLGA-encapsulated formononetin presents a promising therapeutic approach.
急性肾损伤(AKI)是一个重大的公共卫生问题。脓毒症占重症监护病房急性肾损伤病例的 50%以上。我们最近的研究结果表明,PRD1-BF1-RIZ1同源结构域蛋白16(PRDM16)可抑制糖尿病肾病(DKD)的进展。然而,它在脓毒症诱导的 AKI 中的确切作用和调控机制仍不清楚。本研究发现,脂多糖(LPS)和盲肠结扎术(CLP)分别在波士顿大学小鼠近端肾小管(BUMPT)细胞和小鼠肾脏中诱导了PRDM16的表达。从功能上讲,PRDM16 可抑制 LPS 诱导的铁蛋白沉积。从机理上讲,PRDM16 与核因子-红细胞生成素 2 相关因子-2(NRF2)的启动子区域相关联,并增强其表达,进而提高谷胱甘肽过氧化物酶 4(GPX4)的表达。此外,PRDM16 直接参与 GPX4 的启动子区域,刺激其表达。值得注意的是,这些观察结果在人肾小管上皮细胞(HK-2)中得到了证实。此外,小鼠肾近曲小管中的 PRDM16 基因敲除抑制了 NRF2 和 GPX4 的表达,导致谷胱甘肽(GSH)/氧化谷胱甘肽(GSSG)比值降低、Fe2+ 和活性氧(ROS)生成增加、铁渗出加剧以及 AKI 进展。相反,PRDM16 基因敲入则表现出相反的效果。最终,腺病毒(ADV)-PRDM16 质粒或聚乳酸-聚乙二醇酸(PLGA)包裹的福莫尼定不仅减轻了脓毒症诱导的 AKI,还减轻了肝、心和肺损伤。总之,PRDM16 可通过 NRF2/GPX4 轴或 GPX4 抑制铁跃迁,从而预防脓毒症诱发的多器官损伤,包括 AKI。PLGA封装的福莫尼定是一种很有前景的治疗方法。
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引用次数: 0
TXNIP regulates pulmonary inflammation induced by Asian sand dust TXNIP调节亚洲沙尘诱发的肺部炎症。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-06 DOI: 10.1016/j.redox.2024.103421
So-Won Pak , Woong-Il Kim , Se-Jin Lee , Sin-Hyang Park , Young-Kwon Cho , Joong-Sun Kim , Jong-Choon Kim , Sung-Hwan Kim , In-Sik Shin
Asian sand dust (ASD), a seasonal dust storm originating from the deserts of China and Mongolia, affects Korea and Japan during the spring, carrying soil particles and a variety of biochemical components. Exposure to ASD has been associated with the onset and exacerbation of respiratory disorders, although the underlying mechanisms remain unclear. This study investigates ASD-induced pulmonary toxicity and its mechanistic pathways, focusing on the role of thioredoxin-interacting protein (TXNIP). Using TXNIP knock-out (KO) mice and adeno-associated virus (AAV)-mediated TXNIP overexpression transgenic mice, we explored how TXNIP modulates ASD-induced pulmonary inflammation. Mice were exposed to ASD via intranasal administration on days 1, 3, and 5 to induce inflammation. ASD exposure led to significant pulmonary inflammation, evidenced by increased inflammatory cell counts and elevated cytokine levels in bronchoalveolar lavage fluid, as well as heightened protein expression of the TXNIP/NOD-like receptor pyrin domain-containing 3 (NLRP3) inflammasome. TXNIP KO mice exhibited attenuated airway inflammation and downregulation of the NLRP3 inflammasome compared to wild-type controls, while AAV-mediated TXNIP overexpression mice showed exacerbated inflammatory responses, including elevated NLRP3 inflammasome expression, compared to AAV-GFP controls. These findings suggest that TXNIP is a key regulator of ASD-induced pulmonary inflammation.
亚洲沙尘(ASD)是一种源自中国和蒙古沙漠的季节性沙尘暴,在春季影响韩国和日本,携带土壤颗粒和多种生化成分。接触 ASD 与呼吸系统疾病的发生和恶化有关,但其潜在机制仍不清楚。本研究调查了 ASD 诱导的肺毒性及其机理途径,重点研究了硫氧还蛋白相互作用蛋白(TXNIP)的作用。我们利用TXNIP基因敲除(KO)小鼠和腺相关病毒(AAV)介导的TXNIP过表达转基因小鼠,探讨了TXNIP如何调节ASD诱导的肺部炎症。小鼠在第 1、3 和 5 天通过鼻内给药接触 ASD 以诱发炎症。ASD暴露会导致明显的肺部炎症,表现为支气管肺泡灌洗液中炎症细胞数量增加、细胞因子水平升高,以及TXNIP/NOD样受体含吡啶域3(NLRP3)炎性体蛋白表达增加。与野生型对照组相比,TXNIP KO 小鼠表现出气道炎症减轻和 NLRP3 炎症体下调,而与 AAV-GFP 对照组相比,AAV 介导的 TXNIP 过表达小鼠表现出炎症反应加剧,包括 NLRP3 炎症体表达升高。这些发现表明,TXNIP是ASD诱导的肺部炎症的关键调节因子。
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引用次数: 0
Reactivation of MAPK-SOX2 pathway confers ferroptosis sensitivity in KRASG12C inhibitor resistant tumors MAPK-SOX2通路的重新激活使KRASG12C抑制剂耐药的肿瘤对铁中毒敏感。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-05 DOI: 10.1016/j.redox.2024.103419
Kai Wang , Xin Zhang , Yufei Fan , Liang Zhou , Yajun Duan , Su Li , Zhongkan Sun , Chunqian Zhang , Haoyu Yang , Wenxiu Yuan , Linyuan Peng , Xiaoyu Ma , Siliang Xiang , Tianzhi Wang , Mei Yang , Zhenyuan Zhang , Jiaxuan Wang , Zhongyuan Wang , Minxian Qian
The clinical success of KRASG12C inhibitors (G12Ci) including AMG510 and MRTX849 is limited by the eventual development of acquired resistance. A novel and effective treatment to revert or target this resistance is urgent. To this end, we established G12Ci (AMG510 and MRTX849) resistant KRASG12C mutant cancer cell lines and screened with an FDA-approved drug library. We found the ferroptosis inducers including sorafenib and lapatinib stood out with an obvious growth inhibition in the G12Ci resistant cells. Mechanistically, the G12Ci resistant cells exhibited reactivation of MAPK signaling, which repressed SOX2-mediated expression of cystine transporter SLC7A11 and iron exporter SLC40A1. Consequently, the low intracellular GSH level but high iron content engendered hypersensitivity of these resistant tumors to ferroptosis inducers. Ectopic overexpression of SOX2 or SLC7A11 and SLC40A1 conferred resistance to ferroptosis in the G12Ci resistant cells. Ferroptosis induced by sulfasalazine (SAS) achieved obvious inhibition on the tumor growth of xenografts derived from AMG510-resistant KRASG12C-mutant cells. Collectively, our results suggest a novel therapeutic strategy to treat patients bearing G12Ci resistant cancers with ferroptosis inducers.
包括 AMG510 和 MRTX849 在内的 KRASG12C 抑制剂(G12Ci)的临床成功受到了获得性耐药性发展的限制。当务之急是找到一种新型有效的治疗方法来逆转或靶向这种耐药性。为此,我们建立了G12Ci(AMG510和MRTX849)耐药的KRASG12C突变癌细胞系,并用FDA批准的药物库进行筛选。我们发现,索拉非尼和拉帕替尼等铁突变诱导剂对 G12Ci 耐药细胞有明显的生长抑制作用。从机理上讲,G12Ci耐药细胞表现出MAPK信号的重新激活,从而抑制了SOX2介导的胱氨酸转运体SLC7A11和铁排出体SLC40A1的表达。因此,细胞内 GSH 含量低而铁含量高使这些耐药肿瘤对铁变态反应诱导剂过敏。异位过表达SOX2或SLC7A11和SLC40A1可使G12Ci耐药细胞对铁突变产生抗性。磺胺沙拉嗪(SAS)诱导的铁变态反应对AMG510耐药的KRASG12C突变细胞异种移植的肿瘤生长有明显的抑制作用。总之,我们的研究结果表明,用铁蛋白诱导剂治疗对G12Ci耐药的癌症患者是一种新的治疗策略。
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引用次数: 0
A mechanistic systems biology model of brain microvascular endothelial cell signaling reveals dynamic pathway-based therapeutic targets for brain ischemia 脑微血管内皮细胞信号的机制系统生物学模型揭示了基于动态通路的脑缺血治疗靶点。
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-05 DOI: 10.1016/j.redox.2024.103415
Geli Li , Yuchen Ma , Sujie Zhang , Wen Lin , Xinyi Yao , Yating Zhou , Yanyong Zhao , Qi Rao , Yuchen Qu , Yuan Gao , Lianmin Chen , Yu Zhang , Feng Han , Meiling Sun , Chen Zhao
Ischemic stroke is a significant threat to human health. Currently, there is a lack of effective treatments for stroke, and progress in new neuron-centered drug target development is relatively slow. On the other hand, studies have demonstrated that brain microvascular endothelial cells (BMECs) are crucial components of the neurovascular unit and play pivotal roles in ischemic stroke progression. To better understand the complex multifaceted roles of BMECs in the regulation of ischemic stroke pathophysiology and facilitate BMEC-based drug target discovery, we utilized a transcriptomics-informed systems biology modeling approach and constructed a mechanism-based computational multipathway model to systematically investigate BMEC function and its modulatory potential. Extensive multilevel data regarding complex BMEC pathway signal transduction and biomarker expression under various pathophysiological conditions were used for quantitative model calibration and validation, and we generated dynamic BMEC phenotype maps in response to various stroke-related stimuli to identify potential determinants of BMEC fate under stress conditions. Through high-throughput model sensitivity analyses and virtual target perturbations in model-based single cells, our model predicted that targeting succinate could effectively reverse the detrimental cell phenotype of BMECs under oxygen and glucose deprivation/reoxygenation, a condition that mimics stroke pathogenesis, and we experimentally validated the utility of this new target in terms of regulating inflammatory factor production, free radical generation and tight junction protection in vitro and in vivo. Our work is the first that complementarily couples transcriptomic analysis with mechanistic systems-level pathway modeling in the study of BMEC function and endothelium-based therapeutic targets in ischemic stroke.
缺血性中风是人类健康的重大威胁。目前,脑卒中缺乏有效的治疗方法,以神经元为中心的新药靶点开发进展相对缓慢。另一方面,研究表明,脑微血管内皮细胞(BMECs)是神经血管单元的重要组成部分,在缺血性中风的进展中起着关键作用。为了更好地理解脑微血管内皮细胞在缺血性脑卒中病理生理学调控中的复杂的多方面作用,促进基于脑微血管内皮细胞的药物靶点发现,我们利用转录组学信息的系统生物学建模方法,构建了一个基于机制的计算多通路模型,系统地研究了脑微血管内皮细胞的功能及其调控潜力。我们利用有关各种病理生理条件下复杂 BMEC 通路信号转导和生物标记物表达的大量多层次数据对模型进行了定量校准和验证,并生成了响应各种中风相关刺激的动态 BMEC 表型图,以确定应激条件下 BMEC 命运的潜在决定因素。通过高通量模型敏感性分析和在基于模型的单细胞中进行虚拟靶点扰动,我们的模型预测以琥珀酸为靶点可有效逆转 BMEC 在氧和葡萄糖剥夺/复氧(一种模拟中风发病机制的条件)条件下的有害细胞表型,我们还通过实验验证了这一新靶点在体外和体内调节炎症因子产生、自由基生成和紧密连接保护方面的效用。我们的研究首次将转录组分析与机理系统级通路建模结合起来,研究缺血性中风的 BMEC 功能和基于内皮的治疗靶点。
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引用次数: 0
Bioenergetic shift and proteomic signature induced by lentiviral-transduction of GFP-based biosensors 慢病毒转导 GFP 生物传感器诱导的生物能转变和蛋白质组特征
IF 10.7 1区 生物学 Q1 BIOCHEMISTRY & MOLECULAR BIOLOGY Pub Date : 2024-11-02 DOI: 10.1016/j.redox.2024.103416
Sarah Barakat , Şeyma Çimen , Seyed Mohammad Miri , Emre Vatandaşlar , Hayriye Ecem Yelkenci , Alejandro San Martín , Mustafa Çağlar Beker , Kıvanç Kök , Gürkan Öztürk , Emrah Eroglu
Fluorescent proteins (FPs) stand as pivotal tools extensively employed across diverse biological research endeavors in various model systems. However, long-standing concerns surround their use due to the numerous side effects associated with their expression. Recent investigations have brought to light the significance of hydrogen peroxide (H2O2) that is associated with the maturation process of green fluorescent protein (GFP) fluorophores. The structural and functional impairments associated with GFP expression are possibly linked to this amount of H2O2. In this study, we assess the impact of the GFP-based HyPer7 biosensor on cellular homeostasis and proteome changes, aiming to identify potential risks related to oxidative stress responses that potentially risks the application of such tools. Cells expressing genome-integrated HyPer7 demonstrated altered mitochondrial membrane potential (MMP), which was alleviated by the addition of antioxidants or culturing cells at physiological normoxia (5 kPa O2). Additionally, HyPer7-expressing cells also exhibited significant impairment in mitochondrial oxidative respiration, suggesting broader mitochondrial dysfunction. Through untargeted proteomics analysis, we identified 26 proteins exhibiting differential expression in HyPer7-expressing cells compared to respective control cells. Functional annotation analysis showed that the list of the delineated proteins is associated with cellular responses to stress and the regulation of antioxidant mechanisms. Our findings underscore the significance of caution and validation in ensuring a thorough comprehension of cellular responses when using fluorescent protein-based tools, thereby enhancing the reliability of the results.
荧光蛋白(FPs)是在各种模型系统中广泛应用于各种生物研究的关键工具。然而,由于荧光蛋白的表达会产生许多副作用,人们长期以来一直担心荧光蛋白的使用问题。最近的研究发现,过氧化氢(H2O2)与绿色荧光蛋白(GFP)荧光团的成熟过程有关。与 GFP 表达相关的结构和功能损伤可能与 H2O2 的含量有关。在本研究中,我们评估了基于 GFP 的 HyPer7 生物传感器对细胞稳态和蛋白质组变化的影响,旨在确定与氧化应激反应有关的潜在风险,这些风险可能会危及此类工具的应用。表达基因组整合 HyPer7 的细胞显示出线粒体膜电位(MMP)的改变,添加抗氧化剂或在生理常氧(5 kPa O2)条件下培养细胞可缓解这种改变。此外,HyPer7 表达细胞的线粒体氧化呼吸也表现出明显的障碍,这表明线粒体功能障碍的范围更广。通过非靶向蛋白质组学分析,我们发现了26种蛋白质在HyPer7表达细胞中的表达与对照细胞相比有所不同。功能注释分析表明,这些蛋白质与细胞对应激的反应和抗氧化机制的调节有关。我们的研究结果表明,在使用基于荧光蛋白的工具时,必须小心谨慎并进行验证,以确保全面了解细胞的反应,从而提高结果的可靠性。
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Redox Biology
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